#### 1110059E24Rik_ID4913_3 --> 1 - 2 Original Alignment tGTTAAATGTTTACAAAAGACAGTAAAGGACTCTTACCACATAATGTGTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTATTcc cttagtataaaacaaaaataaactgagtatgtatatatctttgtatttagtGTAAAATGTTTACAAAAGACAGTGAAGGATTCATATCACATAATGTGTAGACCATGTTCCTGCCAGCTTGAGGTCTGTGCTAAGTGCAGAAAGGAGGAAGAGACTGTCATCccgtgagcactgtcttttgtaccttttgtacttatgagatattttctaccca Alignment from CESAR tGTTAAATGTTTACAAAAGACAGTAAAGGACTCTTACCACATAATGTGTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTATTcc cttagtataaaacaaaaataaactgagtatgtatatatctttgtatttagtGTAAAATGTTTACAAAAGACAGTGAAGGATTCATATCACATAATGTGTAGACCATGTTCCTGCCAGCTTGAGGTCTGTGCTAAGTGCAGAAAGGAGGAAGAGACTGTCATCccgtgagcactgtcttttgtaccttttgtacttatgagatattttctaccca Alignment from Spaln_aa2Genome TGTTAAATGTTTACAAAAGACAGTAAAGGACTCTTACCACATAATGTGTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTATTCC cttagtataaaacaaaaataaactgagtatgtatatatctttgtatttagTGTAAAATGTTTACAAAAGACAGTGAAGGATTCATATCACATAATGTGTAGACCATGTTCCTGCCAGCTTGAGGTCTGTGCTAAGTGCAGAAAGGAGGAAGAGACTGTCATCCCgtgagcactgtcttttgtaccttttgtacttatgagatattttctaccca Alignment from Spaln_nt2Genome TGTTAAATGTTTACAAAAGACAGTAAAGGACTCTTACCACATAATGTGTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTATTCC cttagtataaaacaaaaataaactgagtatgtatatatctttgtatttagTGTAAAATGTTTACAAAAGACAGTGAAGGATTCATATCACATAATGTGTAGACCATGTTCCTGCCAGCTTGAGGTCTGTGCTAAGTGCAGAAAGGAGGAAGAGACTGTCATCCCgtgagcactgtcttttgtaccttttgtacttatgagatattttctaccca Alignment from Pairagon TGTTAAATGTTTACAAAAGACAGTAAAGGACTCTTACCACATAATGTGTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTATTCC cttagtataaaacaaaaataaactgagtatgtatatatctttgtatttagTGTAAAATGTTTACAAAAGACAGTGAAGGATTCATATCACATAATGTGTAGACCATGTTCCTGCCAGCTTGAGGTCTGTGCTAAGTGCAGAAAGGAGGAAGAGACTGTCATCCCgtgagcactgtcttttgtaccttttgtacttatgagatattttctaccca Alignment from Exonerate_protein2genome TGTTAAATGTTTACAAAAGACAGTAAAGGACTCTTACCACATAATGTGTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTATTCC cttagtataaaacaaaaataaactgagtatgtatatatctttgtatttagTGTAAAATGTTTACAAAAGACAGTGAAGGATTCATATCACATAATGTGTAGACCATGTTCCTGCCAGCTTGAGGTCTGTGCTAAGTGCAGAAAGGAGGAAGAGACTGTCATCCCgtgagcactgtcttttgtaccttttgtacttatgagatattttctaccca Alignment from Exonerate_coding2genome TGTTAAATGTTTACAAAAGACAGTAAAGGACTCTTACCACATAATGTGTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTATTCC cttagtataaaacaaaaataaactgagtatgtatatatctttgtatttagTGTAAAATGTTTACAAAAGACAGTGAAGGATTCATATCACATAATGTGTAGACCATGTTCCTGCCAGCTTGAGGTCTGTGCTAAGTGCAGAAAGGAGGAAGAGACTGTCATCCCgtgagcactgtcttttgtaccttttgtacttatgagatattttctaccca Alignment from GeneWise TGTTAAATGTTTACAAAAGACAGTAAAGGACTCTTACCACATAATGTGTAGACCATGTGCCTGTGAACTTGAAGTTTGTGCCAAATGTGGAAAGAAAGAAGAGATCGTTATTCC cttagtataaaacaaaaataaactgagtatgtatatatctttgtatttagTGTAAAATGTTTACAAAAGACAGTGAAGGATTCATATCACATAATGTGTAGACCATGTTCCTGCCAGCTTGAGGTCTGTGCTAAGTGCAGAAAGGAGGAAGAGACTGTCATCCCgtgagcactgtcttttgtaccttttgtacttatgagatattttctaccca #### 1700017D01Rik_ID3124_4 --> 0 - 0 Original Alignment CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT caccaataacagacaaacagaattaccaacatttttcttcccttttaaagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATCTTTGAATCAGTCGGGACTGAGTATATTTGGTCCAATgtaagcggtagaaagatcctgcttggtcttacccaagccaagtattcgat Alignment from CESAR CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT caccaataacagacaaacagaattaccaacatttttcttcccttttaaagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATCTTTGAATCAGTCGGGACTGAGTATATTTGGTCCAATgtaagcggtagaaagatcctgcttggtcttacccaagccaagtattcgat Alignment from Spaln_aa2Genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT caccaataacagacaaacagaattaccaacatttttcttcccttttaaagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATCTTTGAATCAGTCGGGACTGAGTATATTTGGTCCAATgtaagcggtagaaagatcctgcttggtcttacccaagccaagtattcgat Alignment from Spaln_nt2Genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT caccaataacagacaaacagaattaccaacatttttcttcccttttaaagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATCTTTGAATCAGTCGGGACTGAGTATATTTGGTCCAATgtaagcggtagaaagatcctgcttggtcttacccaagccaagtattcgat Alignment from Pairagon CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT caccaataacagacaaacagaattaccaacatttttcttcccttttaaagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATCTTTGAATCAGTCGGGACTGAGTATATTTGGTCCAATgtaagcggtagaaagatcctgcttggtcttacccaagccaagtattcgat Alignment from Exonerate_protein2genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAATATGGCTGGCATGATGCTT caccaataacagacaaacagaattaccaacatttttcttcccttttaaagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATCTTTGAATCAGTCGGGACTGAGTATATTTGGTCCAATGTAAGCGGTAGAAAGATCctgcttggtcttacccaagccaagtattcgat Alignment from Exonerate_coding2genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAATATGGCTGGCATGATGCTT caccaataacagacaaacagaattaccaacatttttcttcccttttaaagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATCTTTGAATCAGTCGGGACTGAGTATATTTGGTCCAATGTAAGCGGTAGAAAGATCctgcttggtcttacccaagccaagtattcgat Alignment from GeneWise CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT caccaataacagacaaacagaattaccaacatttttcttcccttttaaagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATCTTTGAATCAGTCGGGACTGAGTATATTTGGTCCAATgtaagcggtagaaagatcctgcttggtcttacccaagccaagtattcgat #### 1700019N19Rik_ID12799_2 --> 0 - 1 Original Alignment AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCg gtgtgcctgtaatatgctccatgaatcgttcttctgtgtttctgttttagAGCAAAATGGATGCTCCTAAAACCTTTATGAAAGAGCTCCCCATCACACCGGGGTACTGTggtaagtgcatcatgagggcttactccacctcaaatgaatttgactagact Alignment from CESAR AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCg gtgtgcctgtaatatgctccatgaatcgttcttctgtgtttctgttttagAGCAAAATGGATGCTCCTAAAACCTTTATGAAAGAGCTCCCCATCACACCGGGGTACTGTggtaagtgcatcatgagggcttactccacctcaaatgaatttgactagact Alignment from Spaln_aa2Genome AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtgtgcctgtaatatgctccatgaatcgttcttctgtgtttctgttttagAGCAAAATGGATGCTCCTAAAACCTTTATGAAAGAGCTCCCCATCACACCGGGGTACTGTGgtaagtgcatcatgagggcttactccacctcaaatgaatttgactagact Alignment from Spaln_nt2Genome AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtgtgcctgtaatatgctccatgaatcgttcttctgtgtttctgttttagAGCAAAATGGATGCTCCTAAAACCTTTATGAAAGAGCTCCCCATCACACCGGGGTACTGTGgtaagtgcatcatgagggcttactccacctcaaatgaatttgactagact Alignment from Pairagon AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtgtgcctgtaatatgctccatgaatcgttcttctgtgtttctgttttagAGCAAAATGGATGCTCCTAAAACCTTTATGAAAGAGCTCCCCATCACACCGGGGTACTGTGgtaagtgcatcatgagggcttactccacctcaaatgaatttgactagact Alignment from Exonerate_protein2genome AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtgtgcctgtaatatgctccatgaatcgttcttctgtgtttctgttttagAGCAAAATGGATGCTCCTAAAACCTTTATGAAAGAGCTCCCCATCACACCGGGGTACTGTGgtaagtgcatcatgagggcttactccacctcaaatgaatttgactagact Alignment from Exonerate_coding2genome gtgtgcctgtaatatgctccatgaatcgttcttctgtgtttctgttttagagcaaaatggatgctcctaaaacctttatgaaagagctccccatcacaccggggtactgtggtaagtgcatcatgagggcttactccacctcaaatgaatttgactagact Alignment from GeneWise CTCAAGCCAGCGGAGAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtgtgcctgtaatatgctccatgaatcgttcttctgtgtttctgttttag---------------AGCAAAATGGATGCTCCTAAAACCTTTATGAAAGAGCTCCCCATCACACCGGGGTACTGTGgtaagtgcatcatgagggcttactccacctcaaatgaatttgactagact #### 1700025F22Rik_ID3133_3 --> 0 - 0 Original Alignment CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT aaagtttgctttggtcaccctcttacactcctttttcctttccctttcagCTCATTTGGACAATGACCATGAATGCCCTTGCTATCTTTGCAACACTCCTTGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCAAGTGTATACTCCACTCTGTGGCACTATgtaagggttgctttatggatatttctacactataccaatggtctaatggt Alignment from CESAR CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT aaagtttgctttggtcaccctcttacactcctttttcctttccctttcagCTCATTTGGACAATGACCATGAATGCCCTTGCTATCTTTGCAACACTCCTTGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCAAGTGTATACTCCACTCTGTGGCACTATgtaagggttgctttatggatatttctacactataccaatggtctaatggt Alignment from Spaln_aa2Genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT aaagtttgctttggtcaccctcttacactcctttttcctttccctttcagCTCATTTGGACAATGACCATGAATGCCCTTGCTATCTTTGCAACACTCCTTGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCAAGTGTATACTCCACTCTGTGGCACTATgtaagggttgctttatggatatttctacactataccaatggtctaatggt Alignment from Spaln_nt2Genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT aaagtttgctttggtcaccctcttacactcctttttcctttccctttcagCTCATTTGGACAATGACCATGAATGCCCTTGCTATCTTTGCAACACTCCTTGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCAAGTGTATACTCCACTCTGTGGCACTATgtaagggttgctttatggatatttctacactataccaatggtctaatggt Alignment from Pairagon CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT aaagtttgctttggtcaccctcttacactcctttttcctttccctttcagCTCATTTGGACAATGACCATGAATGCCCTTGCTATCTTTGCAACACTCCTTGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCAAGTGTATACTCCACTCTGTGGCACTATgtaagggttgctttatggatatttctacactataccaatggtctaatggt Alignment from Exonerate_protein2genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT aaagtttgctttggtcaccctcttacactcctttttcctttccctttcagCTCATTTGGACAATGACCATGAATGCCCTTGCTATCTTTGCAACACTCCTTGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCAAGTGTATACTCCACTCTGTGGCACTATgtaagggttgctttatggatatttctacactataccaatggtctaatggt Alignment from Exonerate_coding2genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT aaagtttgctttggtcaccctcttacactcctttttcctttccctttcagCTCATTTGGACAATGACCATGAATGCCCTTGCTATCTTTGCAACACTCCTTGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCAAGTGTATACTCCACTCTGTGGCACTATgtaagggttgctttatggatatttctacactataccaatggtctaatggt Alignment from GeneWise CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT aaagtttgctttggtcaccctcttacactcctttttcctttccctttcagCTCATTTGGACAATGACCATGAATGCCCTTGCTATCTTTGCAACACTCCTTGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCAAGTGTATACTCCACTCTGTGGCACTATgtaagggttgctttatggatatttctacactataccaatggtctaatggt #### 1700028P14Rik_ID5185_4 --> 1 - 2 Original Alignment gGACCCTGAATTG------CCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAAcc cattggagttgtcatatccaaatcatttgcccggcccactgtgtggccagaGATCCTGAATTGCCTCCACCACCCACAGGCTTTAAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAGccgtgagttacagccaaaagacaaacatggtgtttctagctccttcttgaga Alignment from CESAR gGACCCTGAATTGCCT------CCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAAcc cattggagttgtcatatccaaatcatttgcccggcccactgtgtggccagaGATCCTGAATTGCCTCCACCACCCACAGGCTTTAAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAGccgtgagttacagccaaaagacaaacatggtgtttctagctccttcttgaga Alignment from Spaln_aa2Genome GGACCCTGAATTG------CCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC cattggagttgtcatatccaaatcatttgcccggcccactgtgtggccagAGATCCTGAATTGCCTCCACCACCCACAGGCTTTAAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAGCCgtgagttacagccaaaagacaaacatggtgtttctagctccttcttgaga Alignment from Spaln_nt2Genome GGACCCTGAATTGCCTCC------CACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC cattggagttgtcatatccaaatcatttgcccggcccactgtgtggccagAGATCCTGAATTGCCTCCACCACCCACAGGCTTTAAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAGCCgtgagttacagccaaaagacaaacatggtgtttctagctccttcttgaga Alignment from Pairagon AACACTATGCCCCGGGATTTTGGAAAGGGACCCTGAATTGCCT------CCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC cattggagttgtcatatccaaatcatttgcccggcccactgtgtggccagA---------------------------GATCCTGAATTGCCTCCACCACCCACAGGCTTTAAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAGCCgtgagttacagccaaaagacaaacatggtgtttctagctccttcttgaga Alignment from Exonerate_protein2genome GGACCCTGAATTG------CCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC cattggagttgtcatatccaaatcatttgcccggcccactgtgtggccagAGATCCTGAATTGCCTCCACCACCCACAGGCTTTAAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAGCCgtgagttacagccaaaagacaaacatggtgtttctagctccttcttgaga Alignment from Exonerate_coding2genome GGACCCTGAATTG------CCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC cattggagttgtcatatccaaatcatttgcccggcccactgtgtggccagAGATCCTGAATTGCCTCCACCACCCACAGGCTTTAAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAGCCgtgagttacagccaaaagacaaacatggtgtttctagctccttcttgaga Alignment from GeneWise GGACCCTGAATTG------CCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC cattggagttgtcatatccaaatcatttgcccggcccactgtgtggccagAGATCCTGAATTGCCTCCACCACCCACAGGCTTTAAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAGCCgtgagttacagccaaaagacaaacatggtgtttctagctccttcttgaga #### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGATAATCTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGATAATCTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGATAATCTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGATAATCTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGATAATCTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGATAATCTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGATAATCTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ttatgggtactagggtcagcctgtttatagtggttggctttctcttccagTCAGGCCTCAAATCAGAAATGAGTGAGATAATCTTATGTGAGAATGAAGTGGACCTGGCCCTTTCAAACCTACTGACTTGGATGCAGGAGGAATCCTTGTCCACCAATCTGgtgagcgaacataccagaaatgtaatccaacaggtggtgattaatagata #### 1700123I01Rik_ID1490_2 --> 1 - 0 Original Alignment aGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG ctgccactagatttagtgtaattttggtttctctttgtccacactccaagaGGACATGAAATAGAGGGTAAGAAAGTCATTGTACAGGAGCTTGACgtaagtgcatctaaaatgagaggtgagataagactcccagagacatgatg Alignment from CESAR aGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG ctgccactagatttagtgtaattttggtttctctttgtccacactccaagaGGACATGAAATAGAGGGTAAGAAAGTCATTGTACAGGAGCTTGACgtaagtgcatctaaaatgagaggtgagataagactcccagagacatgatg Alignment from Spaln_aa2Genome AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG ctgccactagatttagtgtaattttggtttctctttgtccacactccaagAGGACATGAAATAGAGGGTAAGAAAGTCATTGTACAGGAGCTTGACgtaagtgcatctaaaatgagaggtgagataagactcccagagacatgatg Alignment from Spaln_nt2Genome AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG ctgccactagatttagtgtaattttggtttctctttgtccacactccaagAGGACATGAAATAGAGGGTAAGAAAGTCATTGTACAGGAGCTTGACgtaagtgcatctaaaatgagaggtgagataagactcccagagacatgatg Alignment from Pairagon AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG ctgccactagatttagtgtaattttggtttctctttgtccacactccaagAGGACATGAAATAGAGGGTAAGAAAGTCATTGTACAGGAGCTTGACgtaagtgcatctaaaatgagaggtgagataagactcccagagacatgatg Alignment from Exonerate_protein2genome AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG ctgccactagatttagtgtaattttggtttctctttgtccacactccaagAGGACATGAAATAGAGGGTAAGAAAGTCATTGTACAGGAGCTTGACgtaagtgcatctaaaatgagaggtgagataagactcccagagacatgatg Alignment from Exonerate_coding2genome AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG ctgccactagatttagtgtaattttggtttctctttgtccacactccaagAGGACATGAAATAGAGGGTAAGAAAGTCATTGTACAGGAGCTTGACgtaagtgcatctaaaatgagaggtgagataagactcccagagacatgatg Alignment from GeneWise AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG ctgccactagatttagtgtaattttggtttctctttgtccacactccaagAGGACATGAAATAGAGGGTAAGAAAGTCATTGTACAGGAGCTTGACgtaagtgcatctaaaatgagaggtgagataagactcccagagacatgatg #### 1700123I01Rik_ID1498_8 --> 0 - 1 Original Alignment AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGg atagccctggccacagcctaattttcacgatgctttgtttgtgtcctcagAGCACTGATGAAGAAGCCCAGCAGGAATATCAAGACACCCCAGCTTCTAATGCCATTGCTATCAAAGACCAGggtaaggcatgaaggcagtagaagggcagggtacaatcgcatattcacaca Alignment from CESAR AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGg atagccctggccacagcctaattttcacgatgctttgtttgtgtcctcagAGCACTGATGAAGAAGCCCAGCAGGAATATCAAGACACCCCAGCTTCTAATGCCATTGCTATCAAAGACCAGggtaaggcatgaaggcagtagaagggcagggtacaatcgcatattcacaca Alignment from Spaln_aa2Genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccacagcctaattttcacgatgctttgtttgtgtcctcagAGCACTGATGAAGAAGCCCAGCAGGAATATCAAGACACCCCAGCTTCTAATGCCATTGCTATCAAAGACCAGGgtaaggcatgaaggcagtagaagggcagggtacaatcgcatattcacaca Alignment from Spaln_nt2Genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccacagcctaattttcacgatgctttgtttgtgtcctcagAGCACTGATGAAGAAGCCCAGCAGGAATATCAAGACACCCCAGCTTCTAATGCCATTGCTATCAAAGACCAGGgtaaggcatgaaggcagtagaagggcagggtacaatcgcatattcacaca Alignment from Pairagon AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccacagcctaattttcacgatgctttgtttgtgtcctcagAGCACTGATGAAGAAGCCCAGCAGGAATATCAAGACACCCCAGCTTCTAATGCCATTGCTATCAAAGACCAGGgtaaggcatgaaggcagtagaagggcagggtacaatcgcatattcacaca Alignment from Exonerate_protein2genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccacagcctaattttcacgatgctttgtttgtgtcctcagAGCACTGATGAAGAAGCCCAGCAGGAATATCAAGACACCCCAGCTTCTAATGCCATTGCTATCAAAGACCAGGgtaaggcatgaaggcagtagaagggcagggtacaatcgcatattcacaca Alignment from Exonerate_coding2genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGGATGCTGCG atagccctggccacagcctaattttcacgatgctttgtttgtgtcctcagAGCACTGATGAAGAAGCCCAGCAGGAATATCAAGACACCCCAGCTTCTAATGCCATTGCTATCAAAGACCAGGGTAAGGCAtgaaggcagtagaagggcagggtacaatcgcatattcacaca Alignment from GeneWise CGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccacagcctaattttcacgatgctttgtttgtgtcctcagagcactgatgaagAA---------GCCCAGCAGGAATATCAAGACACCCCAGCTTCTAATGCCATTGCTATCAAAGACCAGGgtaaggcatgaaggcagtagaagggcagggtacaatcgcatattcacaca #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCGTGCTGTGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTgtgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCGTGCTGTGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTgtgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCGTGCTGTGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTGTgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCGTGCTGTGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTGTgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCGTGCTGTGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCgtgtgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGCGTC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCGTGCTGTGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTGTGTAttgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGCGTC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCGTGCTGTGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTGTGTAttgagaaagccacttcttcctcgctaagatgattatttggtaccatt Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC gggttgattggagctgctcgacatggccccgtcttttcgttttcctgcagGAGTTAAGGAAGAAGTTGTTTAAGCGTCATAGGGTATTAAGTAAAGATTGGCAAAGGAAATGCCAGGTGGTTCGTGCTGTGATAGATGAAGGTTTGACTATGAAACACCACCTCAAGAAGCGTGTgtattgagaaagccacttcttcctcgctaagatgattatttggtaccatt #### 2410127L17Rik_ID4448_3 --> 0 - 2 Original Alignment GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGAtg ccacacaagataagttctgggccttggggttggcaacagggcagctgcagGCCAATGGGAAAATTATGCCAGCATCAACATTCGACATGGATAAGTTGAAATCTACACTGAAACAGTTTGTGAGAGACTGGAGTGAGACTGGGAAAGCAGAACGGGATGCCTGTTATAAGCCAATCATTAAAGAGATTATCAAAAACTTTCCAAAGGAGAGAtggtataaattattgagttgttatgtagatcttcccacttaggtactaccac Alignment from CESAR GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGAtg ccacacaagataagttctgggccttggggttggcaacagggcagctgcagGCCAATGGGAAAATTATGCCAGCATCAACATTCGACATGGATAAGTTGAAATCTACACTGAAACAGTTTGTGAGAGACTGGAGTGAGACTGGGAAAGCAGAACGGGATGCCTGTTATAAGCCAATCATTAAAGAGATTATCAAAAACTTTCCAAAGGAGAGAtggtataaattattgagttgttatgtagatcttcccacttaggtactaccac Alignment from Spaln_aa2Genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ccacacaagataagttctgggccttggggttggcaacagggcagctgcagGCCAATGGGAAAATTATGCCAGCATCAACATTCGACATGGATAAGTTGAAATCTACACTGAAACAGTTTGTGAGAGACTGGAGTGAGACTGGGAAAGCAGAACGGGATGCCTGTTATAAGCCAATCATTAAAGAGATTATCAAAAACTTTCCAAAGGAGAGATGgtataaattattgagttgttatgtagatcttcccacttaggtactaccac Alignment from Spaln_nt2Genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ccacacaagataagttctgggccttggggttggcaacagggcagctgcagGCCAATGGGAAAATTATGCCAGCATCAACATTCGACATGGATAAGTTGAAATCTACACTGAAACAGTTTGTGAGAGACTGGAGTGAGACTGGGAAAGCAGAACGGGATGCCTGTTATAAGCCAATCATTAAAGAGATTATCAAAAACTTTCCAAAGGAGAGATGgtataaattattgagttgttatgtagatcttcccacttaggtactaccac Alignment from Pairagon GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ccacacaagataagttctgggccttggggttggcaacagggcagctgcagGCCAATGGGAAAATTATGCCAGCATCAACATTCGACATGGATAAGTTGAAATCTACACTGAAACAGTTTGTGAGAGACTGGAGTGAGACTGGGAAAGCAGAACGGGATGCCTGTTATAAGCCAATCATTAAAGAGATTATCAAAAACTTTCCAAAGGAGAGATGgtataaattattgagttgttatgtagatcttcccacttaggtactaccac Alignment from Exonerate_protein2genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ccacacaagataagttctgggccttggggttggcaacagggcagctgcagGCCAATGGGAAAATTATGCCAGCATCAACATTCGACATGGATAAGTTGAAATCTACACTGAAACAGTTTGTGAGAGACTGGAGTGAGACTGGGAAAGCAGAACGGGATGCCTGTTATAAGCCAATCATTAAAGAGATTATCAAAAACTTTCCAAAGGAGAGATGgtataaattattgagttgttatgtagatcttcccacttaggtactaccac Alignment from Exonerate_coding2genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ccacacaagataagttctgggccttggggttggcaacagggcagctgcagGCCAATGGGAAAATTATGCCAGCATCAACATTCGACATGGATAAGTTGAAATCTACACTGAAACAGTTTGTGAGAGACTGGAGTGAGACTGGGAAAGCAGAACGGGATGCCTGTTATAAGCCAATCATTAAAGAGATTATCAAAAACTTTCCAAAGGAGAGATGgtataaattattgagttgttatgtagatcttcccacttaggtactaccac Alignment from GeneWise GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ccacacaagataagttctgggccttggggttggcaacagggcagctgcagGCCAATGGGAAAATTATGCCAGCATCAACATTCGACATGGATAAGTTGAAATCTACACTGAAACAGTTTGTGAGAGACTGGAGTGAGACTGGGAAAGCAGAACGGGATGCCTGTTATAAGCCAATCATTAAAGAGATTATCAAAAACTTTCCAAAGGAGAGATGgtataaattattgagttgttatgtagatcttcccacttaggtactaccac #### 2410127L17Rik_ID4449_4 --> 1 - 2 Original Alignment gGATCCTTCTAAAGTAAATATTCTGGTACCTGGTGCTGGACTAGGAAGATTGGCCTGGGAAGTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCTCTTTTCTTCCAACTTTGTACTCAACag cacccccatctattgagtggtcaggtgtcactaaggtccgcctcccacaggGATCCTTCTAAAGTAAACATTCTGGTACCGGGGGCTGGACTTGGAAGATTGGGCCGGGAATTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCAGTTCTCTCCCAACTTTGTACTCAACaggtgagtatctatgctattgtggacacagttggggaagaactgcataaaaa Alignment from CESAR gGATCCTTCTAAAGTAAATATTCTGGTACCTGGTGCTGGACTAGGAAGATTGGCCTGGGAAGTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCTCTTTTCTTCCAACTTTGTACTCAACag cacccccatctattgagtggtcaggtgtcactaaggtccgcctcccacaggGATCCTTCTAAAGTAAACATTCTGGTACCGGGGGCTGGACTTGGAAGATTGGGCCGGGAATTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCAGTTCTCTCCCAACTTTGTACTCAACaggtgagtatctatgctattgtggacacagttggggaagaactgcataaaaa Alignment from Spaln_aa2Genome GGATCCTTCTAAAGTAAATATTCTGGTACCTGGTGCTGGACTAGGAAGATTGGCCTGGGAAGTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCTCTTTTCTTCCAACTTTGTACTCAACAG cacccccatctattgagtggtcaggtgtcactaaggtccgcctcccacagGGATCCTTCTAAAGTAAACATTCTGGTACCGGGGGCTGGACTTGGAAGATTGGGCCGGGAATTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCAGTTCTCTCCCAACTTTGTACTCAACAGgtgagtatctatgctattgtggacacagttggggaagaactgcataaaaa Alignment from Spaln_nt2Genome GGATCCTTCTAAAGTAAATATTCTGGTACCTGGTGCTGGACTAGGAAGATTGGCCTGGGAAGTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCTCTTTTCTTCCAACTTTGTACTCAACAG cacccccatctattgagtggtcaggtgtcactaaggtccgcctcccacagGGATCCTTCTAAAGTAAACATTCTGGTACCGGGGGCTGGACTTGGAAGATTGGGCCGGGAATTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCAGTTCTCTCCCAACTTTGTACTCAACAGgtgagtatctatgctattgtggacacagttggggaagaactgcataaaaa Alignment from Pairagon GGATCCTTCTAAAGTAAATATTCTGGTACCTGGTGCTGGACTAGGAAGATTGGCCTGGGAAGTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCTCTTTTCTTCCAACTTTGTACTCAACAG cacccccatctattgagtggtcaggtgtcactaaggtccgcctcccacagGGATCCTTCTAAAGTAAACATTCTGGTACCGGGGGCTGGACTTGGAAGATTGGGCCGGGAATTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCAGTTCTCTCCCAACTTTGTACTCAACAGgtgagtatctatgctattgtggacacagttggggaagaactgcataaaaa Alignment from Exonerate_protein2genome GGATCCTTCTAAAGTAAATATTCTGGTACCTGGTGCTGGACTAGGAAGATTGGCCTGGGAAGTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCTCTTTTCTTCCAACTTTGTACTCAACAG cacccccatctattgagtggtcaggtgtcactaaggtccgcctcccacagGGATCCTTCTAAAGTAAACATTCTGGTACCGGGGGCTGGACTTGGAAGATTGGGCCGGGAATTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCAGTTCTCTCCCAACTTTGTACTCAACAGgtgagtatctatgctattgtggacacagttggggaagaactgcataaaaa Alignment from Exonerate_coding2genome GGATCCTTCTAAAGTAAATATTCTGGTACCTGGTGCTGGACTAGGAAGATTGGCCTGGGAAGTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCTCTTTTCTTCCAACTTTGTACTCAACAG cacccccatctattgagtggtcaggtgtcactaaggtccgcctcccacagGGATCCTTCTAAAGTAAACATTCTGGTACCGGGGGCTGGACTTGGAAGATTGGGCCGGGAATTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCAGTTCTCTCCCAACTTTGTACTCAACAGgtgagtatctatgctattgtggacacagttggggaagaactgcataaaaa Alignment from GeneWise GGATCCTTCTAAAGTAAATATTCTGGTACCTGGTGCTGGACTAGGAAGATTGGCCTGGGAAGTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCTCTTTTCTTCCAACTTTGTACTCAACAG cacccccatctattgagtggtcaggtgtcactaaggtccgcctcccacagGGATCCTTCTAAAGTAAACATTCTGGTACCGGGGGCTGGACTTGGAAGATTGGGCCGGGAATTAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTATGCAGTTCTCTCCCAACTTTGTACTCAACAGgtgagtatctatgctattgtggacacagttggggaagaactgcataaaaa #### 2410127L17Rik_ID4450_5 --> 1 - 1 Original Alignment aTGTTCTGAAATTAACAAATATAAACTTTATCCCTGGATCCATCAGTTTAGCAATAATCGGAGATCAGCTGATCAGATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTCTTCCTCCTGGTTCTAACTTTTCCATGACAGCAGGAGACTTTCAGGAGATTTACTCAGAATGCa cattttaggaaattagttaattatataccaatacaccctttctctcataggTGTTCTGAGATCAACAAATATAAACTTTACCCTTGGATCCACCAGTTTAGCAATAACCGTAGGTCGGCTGATCAAATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTTTGCCCCCTGGATCAAACTTTTCCATGACCGCAGGAGAGTTTCAGGAAATATATTCAGAATGCagtaaaatttaacgacacaagagttccacatatatacttgatccactgtag Alignment from CESAR aTGTTCTGAAATTAACAAATATAAACTTTATCCCTGGATCCATCAGTTTAGCAATAATCGGAGATCAGCTGATCAGATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTCTTCCTCCTGGTTCTAACTTTTCCATGACAGCAGGAGACTTTCAGGAGATTTACTCAGAATGCa cattttaggaaattagttaattatataccaatacaccctttctctcataggTGTTCTGAGATCAACAAATATAAACTTTACCCTTGGATCCACCAGTTTAGCAATAACCGTAGGTCGGCTGATCAAATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTTTGCCCCCTGGATCAAACTTTTCCATGACCGCAGGAGAGTTTCAGGAAATATATTCAGAATGCagtaaaatttaacgacacaagagttccacatatatacttgatccactgtag Alignment from Spaln_aa2Genome ATGTTCTGAAATTAACAAATATAAACTTTATCCCTGGATCCATCAGTTTAGCAATAATCGGAGATCAGCTGATCAGATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTCTTCCTCCTGGTTCTAACTTTTCCATGACAGCAGGAGACTTTCAGGAGATTTACTCAGAATGCA cattttaggaaattagttaattatataccaatacaccctttctctcatagGTGTTCTGAGATCAACAAATATAAACTTTACCCTTGGATCCACCAGTTTAGCAATAACCGTAGGTCGGCTGATCAAATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTTTGCCCCCTGGATCAAACTTTTCCATGACCGCAGGAGAGTTTCAGGAAATATATTCAGAATGCAgtaaaatttaacgacacaagagttccacatatatacttgatccactgtag Alignment from Spaln_nt2Genome ATGTTCTGAAATTAACAAATATAAACTTTATCCCTGGATCCATCAGTTTAGCAATAATCGGAGATCAGCTGATCAGATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTCTTCCTCCTGGTTCTAACTTTTCCATGACAGCAGGAGACTTTCAGGAGATTTACTCAGAATGCA cattttaggaaattagttaattatataccaatacaccctttctctcatagGTGTTCTGAGATCAACAAATATAAACTTTACCCTTGGATCCACCAGTTTAGCAATAACCGTAGGTCGGCTGATCAAATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTTTGCCCCCTGGATCAAACTTTTCCATGACCGCAGGAGAGTTTCAGGAAATATATTCAGAATGCAgtaaaatttaacgacacaagagttccacatatatacttgatccactgtag Alignment from Pairagon ATGTTCTGAAATTAACAAATATAAACTTTATCCCTGGATCCATCAGTTTAGCAATAATCGGAGATCAGCTGATCAGATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTCTTCCTCCTGGTTCTAACTTTTCCATGACAGCAGGAGACTTTCAGGAGATTTACTCAGAATGCA cattttaggaaattagttaattatataccaatacaccctttctctcatagGTGTTCTGAGATCAACAAATATAAACTTTACCCTTGGATCCACCAGTTTAGCAATAACCGTAGGTCGGCTGATCAAATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTTTGCCCCCTGGATCAAACTTTTCCATGACCGCAGGAGAGTTTCAGGAAATATATTCAGAATGCAgtaaaatttaacgacacaagagttccacatatatacttgatccactgtag Alignment from Exonerate_protein2genome ATGTTCTGAAATTAACAAATATAAACTTTATCCCTGGATCCATCAGTTTAGCAATAATCGGAGATCAGCTGATCAGATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTCTTCCTCCTGGTTCTAACTTTTCCATGACAGCAGGAGACTTTCAGGAGATTTACTCAGAATGCA cattttaggaaattagttaattatataccaatacaccctttctctcatagGTGTTCTGAGATCAACAAATATAAACTTTACCCTTGGATCCACCAGTTTAGCAATAACCGTAGGTCGGCTGATCAAATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTTTGCCCCCTGGATCAAACTTTTCCATGACCGCAGGAGAGTTTCAGGAAATATATTCAGAATGCAgtaaaatttaacgacacaagagttccacatatatacttgatccactgtag Alignment from Exonerate_coding2genome ATGTTCTGAAATTAACAAATATAAACTTTATCCCTGGATCCATCAGTTTAGCAATAATCGGAGATCAGCTGATCAGATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTCTTCCTCCTGGTTCTAACTTTTCCATGACAGCAGGAGACTTTCAGGAGATTTACTCAGAATGCA cattttaggaaattagttaattatataccaatacaccctttctctcatagGTGTTCTGAGATCAACAAATATAAACTTTACCCTTGGATCCACCAGTTTAGCAATAACCGTAGGTCGGCTGATCAAATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTTTGCCCCCTGGATCAAACTTTTCCATGACCGCAGGAGAGTTTCAGGAAATATATTCAGAATGCAgtaaaatttaacgacacaagagttccacatatatacttgatccactgtag Alignment from GeneWise ATGTTCTGAAATTAACAAATATAAACTTTATCCCTGGATCCATCAGTTTAGCAATAATCGGAGATCAGCTGATCAGATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTCTTCCTCCTGGTTCTAACTTTTCCATGACAGCAGGAGACTTTCAGGAGATTTACTCAGAATGCA cattttaggaaattagttaattatataccaatacaccctttctctcatagGTGTTCTGAGATCAACAAATATAAACTTTACCCTTGGATCCACCAGTTTAGCAATAACCGTAGGTCGGCTGATCAAATCCGACCCATTCTTTTCCCTGATGTTGACCCCCACAGTTTGCCCCCTGGATCAAACTTTTCCATGACCGCAGGAGAGTTTCAGGAAATATATTCAGAATGCAgtaaaatttaacgacacaagagttccacatatatacttgatccactgtag #### 4430402I18Rik_ID6186_4 --> 2 - 0 Original Alignment caTGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA tctctatggacaccacactactgataaggaatctcttctttccctgccagcaTGGGAAGACTTGGCATATTATTCAAAAAATACTCGAGACTTCCTGTTCCCTGAGCCTAGGCTGGCATCCCCACACCTGGGCATGCATAGAGAGGTTCTCATGAAAATTGCTATCTGGTTTCCAgtaggtacctctcaaactggactttatgctttccaattagtttaagtgga Alignment from CESAR caTGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA tctctatggacaccacactactgataaggaatctcttctttccctgccagcaTGGGAAGACTTGGCATATTATTCAAAAAATACTCGAGACTTCCTGTTCCCTGAGCCTAGGCTGGCATCCCCACACCTGGGCATGCATAGAGAGGTTCTCATGAAAATTGCTATCTGGTTTCCAgtaggtacctctcaaactggactttatgctttccaattagtttaagtgga Alignment from Spaln_aa2Genome CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA tctctatggacaccacactactgataaggaatctcttctttccctgccagCATGGGAAGACTTGGCATATTATTCAAAAAATACTCGAGACTTCCTGTTCCCTGAGCCTAGGCTGGCATCCCCACACCTGGGCATGCATAGAGAGGTTCTCATGAAAATTGCTATCTGGTTTCCAgtaggtacctctcaaactggactttatgctttccaattagtttaagtgga Alignment from Spaln_nt2Genome CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA tctctatggacaccacactactgataaggaatctcttctttccctgccagCATGGGAAGACTTGGCATATTATTCAAAAAATACTCGAGACTTCCTGTTCCCTGAGCCTAGGCTGGCATCCCCACACCTGGGCATGCATAGAGAGGTTCTCATGAAAATTGCTATCTGGTTTCCAgtaggtacctctcaaactggactttatgctttccaattagtttaagtgga Alignment from Pairagon CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA tctctatggacaccacactactgataaggaatctcttctttccctgccagCATGGGAAGACTTGGCATATTATTCAAAAAATACTCGAGACTTCCTGTTCCCTGAGCCTAGGCTGGCATCCCCACACCTGGGCATGCATAGAGAGGTTCTCATGAAAATTGCTATCTGGTTTCCAgtaggtacctctcaaactggactttatgctttccaattagtttaagtgga Alignment from Exonerate_protein2genome CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA tctctatggacaccacactactgataaggaatctcttctttccctgccagCATGGGAAGACTTGGCATATTATTCAAAAAATACTCGAGACTTCCTGTTCCCTGAGCCTAGGCTGGCATCCCCACACCTGGGCATGCATAGAGAGGTTCTCATGAAAATTGCTATCTGGTTTCCAgtaggtacctctcaaactggactttatgctttccaattagtttaagtgga Alignment from Exonerate_coding2genome CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA tctctatggacaccacactactgataaggaatctcttctttccctgccagCATGGGAAGACTTGGCATATTATTCAAAAAATACTCGAGACTTCCTGTTCCCTGAGCCTAGGCTGGCATCCCCACACCTGGGCATGCATAGAGAGGTTCTCATGAAAATTGCTATCTGGTTTCCAgtaggtacctctcaaactggactttatgctttccaattagtttaagtgga Alignment from GeneWise TTTAGAAAGCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAGCATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA CTATGGACACCACACTACTGATAAGGAATCTCTT---CTTTCCCTGCCAGCATGGGAAGACTTGGCATATTATTCAAAAAATACTCGAGACTTCCTGTTCCCTGAGCCTAGGCTGGCATCCCCACACCTGGGCATGCATAGAGAGGTTCTCATGAAAATTGCTATCTGGTTTCCAgtaggtacctctcaaactggactttatgctttccaattagtttaagtgga #### 4430402I18Rik_ID6188_2 --> 0 - 1 Original Alignment GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAa gtcaaagcaaatgttccccttggcatcaagttagcctgtttttatcacagGGATTTGAGAAGGCAATAGATCCAGGAGCTGTTGCAGAACTTTTGGAGagtatgaatgtaggagacaaacaaaaaggacatccttgaagtactacaggt Alignment from CESAR GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAa gtcaaagcaaatgttccccttggcatcaagttagcctgtttttatcacagGGATTTGAGAAGGCAATAGATCCAGGAGCTGTTGCAGAACTTTTGGAGagtatgaatgtaggagacaaacaaaaaggacatccttgaagtactacaggt Alignment from Spaln_aa2Genome GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gtcaaagcaaatgttccccttggcatcaagttagcctgtttttatcacagGGATTTGAGAAGGCAATAGATCCAGGAGCTGTTGCAGAACTTTTGGAGAgtatgaatgtaggagacaaacaaaaaggacatccttgaagtactacaggt Alignment from Spaln_nt2Genome GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gtcaaagcaaatgttccccttggcatcaagttagcctgtttttatcacagGGATTTGAGAAGGCAATAGATCCAGGAGCTGTTGCAGAACTTTTGGAGAgtatgaatgtaggagacaaacaaaaaggacatccttgaagtactacaggt Alignment from Pairagon GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gtcaaagcaaatgttccccttggcatcaagttagcctgtttttatcacagGGATTTGAGAAGGCAATAGATCCAGGAGCTGTTGCAGAACTTTTGGAGAgtatgaatgtaggagacaaacaaaaaggacatccttgaagtactacaggt Alignment from Exonerate_protein2genome TTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gtcaaagcaaatgttccccttggcatcaagttagcctgtttttatcacagggaTTTGAGAAGGCAATAGATCCAGGAGCTGTTGCAGAACTTTTGGAGAgtatgaatgtaggagacaaacaaaaaggacatccttgaagtactacaggt Alignment from Exonerate_coding2genome TTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gtcaaagcaaatgttccccttggcatcaagttagcctgtttttatcacagggaTTTGAGAAGGCAATAGATCCAGGAGCTGTTGCAGAACTTTTGGAGAgtatgaatgtaggagacaaacaaaaaggacatccttgaagtactacaggt Alignment from GeneWise gtcaaagcaaatgttccccttggcatcaagttagcctgtttttatcacagggatttgagaaggcaatagatccaggagctgttgcagaacttttggagagtatgaatgtaggagacaaacaaaaaggacatccttgaagtactacaggt #### 4930506M07Rik_ID12854_16 --> 2 - 2 Original Alignment gtCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTca tggatgatatcatggaggatcatcaacccctctgcttcttctctctgtaggtCCTACTGGGATACTAGCAACTTCAGAGTCCAAGTCTACGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACATGAAAAGTTTGGAGGCCGAGTTCAACAATCCCTGTCCTCTAACACCTGAGCCAGGCGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCcagtatgttaagtgcctaccttcattcatcttgatggtgatgcctatgatct Alignment from CESAR gtCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTca tggatgatatcatggaggatcatcaacccctctgcttcttctctctgtaggtCCTACTGGGATACTAGCAACTTCAGAGTCCAAGTCTACGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACATGAAAAGTTTGGAGGCCGAGTTCAACAATCCCTGTCCTCTAACACCTGAGCCAGGCGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCcagtatgttaagtgcctaccttcattcatcttgatggtgatgcctatgatct Alignment from Spaln_aa2Genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcatggaggatcatcaacccctctgcttcttctctctgtagGTCCTACTGGGATACTAGCAACTTCAGAGTCCAAGTCTACGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACATGAAAAGTTTGGAGGCCGAGTTCAACAATCCCTGTCCTCTAACACCTGAGCCAGGCGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtatgttaagtgcctaccttcattcatcttgatggtgatgcctatgatct Alignment from Spaln_nt2Genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcatggaggatcatcaacccctctgcttcttctctctgtagGTCCTACTGGGATACTAGCAACTTCAGAGTCCAAGTCTACGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACATGAAAAGTTTGGAGGCCGAGTTCAACAATCCCTGTCCTCTAACACCTGAGCCAGGCGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtatgttaagtgcctaccttcattcatcttgatggtgatgcctatgatct Alignment from Pairagon GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcatggaggatcatcaacccctctgcttcttctctctgtagGTCCTACTGGGATACTAGCAACTTCAGAGTCCAAGTCTACGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACATGAAAAGTTTGGAGGCCGAGTTCAACAATCCCTGTCCTCTAACACCTGAGCCAGGCGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtatgttaagtgcctaccttcattcatcttgatggtgatgcctatgatct Alignment from Exonerate_protein2genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcatggaggatcatcaacccctctgcttcttctctctgtagGTCCTACTGGGATACTAGCAACTTCAGAGTCCAAGTCTACGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACATGAAAAGTTTGGAGGCCGAGTTCAACAATCCCTGTCCTCTAACACCTGAGCCAGGCGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtatgttaagtgcctaccttcattcatcttgatggtgatgcctatgatct Alignment from Exonerate_coding2genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcatggaggatcatcaacccctctgcttcttctctctgtagGTCCTACTGGGATACTAGCAACTTCAGAGTCCAAGTCTACGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACATGAAAAGTTTGGAGGCCGAGTTCAACAATCCCTGTCCTCTAACACCTGAGCCAGGCGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtatgttaagtgcctaccttcattcatcttgatggtgatgcctatgatct Alignment from GeneWise GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcatggaggatcatcaacccctctgcttcttctctctgtagGTCCTACTGGGATACTAGCAACTTCAGAGTCCAAGTCTACGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACATGAAAAGTTTGGAGGCCGAGTTCAACAATCCCTGTCCTCTAACACCTGAGCCAGGCGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtatgttaagtgcctaccttcattcatcttgatggtgatgcctatgatct #### 4930506M07Rik_ID12858_14 --> 0 - 0 Original Alignment CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tggaaattttttggcatttttttgcctcacagcctcttattattttttagCCAGACTCACTTAAGGGTTCTGAAAGTGCAGTTGATGAGCTGAAGGGAATTTTAgtaccaaggaccgattgcccctgattgtccaaaatagaatacttgggagc Alignment from CESAR CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tggaaattttttggcatttttttgcctcacagcctcttattattttttagCCAGACTCACTTAAGGGTTCTGAAAGTGCAGTTGATGAGCTGAAGGGAATTTTAgtaccaaggaccgattgcccctgattgtccaaaatagaatacttgggagc Alignment from Spaln_aa2Genome CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tggaaattttttggcatttttttgcctcacagcctcttattattttttagCCAGACTCACTTAAGGGTTCTGAAAGTGCAGTTGATGAGCTGAAGGGAATTTTAgtaccaaggaccgattgcccctgattgtccaaaatagaatacttgggagc Alignment from Spaln_nt2Genome CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tggaaattttttggcatttttttgcctcacagcctcttattattttttagCCAGACTCACTTAAGGGTTCTGAAAGTGCAGTTGATGAGCTGAAGGGAATTTTAgtaccaaggaccgattgcccctgattgtccaaaatagaatacttgggagc Alignment from Pairagon CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tggaaattttttggcatttttttgcctcacagcctcttattattttttagCCAGACTCACTTAAGGGTTCTGAAAGTGCAGTTGATGAGCTGAAGGGAATTTTAgtaccaaggaccgattgcccctgattgtccaaaatagaatacttgggagc Alignment from Exonerate_protein2genome CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tggaaattttttggcatttttttgcctcacagcctcttattattttttagCCAGACTCACTTAAGGGTTCTGAAAGTGCAGTTGATGAGCTGAAGGGAATTTTAgtaccaaggaccgattgcccctgattgtccaaaatagaatacttgggagc Alignment from Exonerate_coding2genome CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tggaaattttttggcatttttttgcctcacagcctcttattattttttagCCAGACTCACTTAAGGGTTCTGAAAGTGCAGTTGATGAGCTGAAGGGAATTTTAgtaccaaggaccgattgcccctgattgtccaaaatagaatacttgggagc Alignment from GeneWise CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tggaaattttttggcatttttttgcctcacagcctcttattattttttagCCAGACTCACTTAAGGGTTCTGAAAGTGCAGTTGATGAGCTGAAGGGAATTTTAgtaccaaggaccgattgcccctgattgtccaaaatagaatacttgggagc #### 4930506M07Rik_ID12864_11 --> 2 - 2 Original Alignment tgGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCcg taatctgtcattcttgtagggagtattagcccctttgttgaccactaaagtgGATGAACTCCATAAACGAGTGAACCAATCTAAGAAATCAGTGCCTCCCCCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCcggtgagctgtactcctatactctttgtaccctcataacctggatattagta Alignment from CESAR tgGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCcg taatctgtcattcttgtagggagtattagcccctttgttgaccactaaagtgGATGAACTCCATAAACGAGTGAACCAATCTAAGAAATCAGTGCCTCCCCCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCcggtgagctgtactcctatactctttgtaccctcataacctggatattagta Alignment from Spaln_aa2Genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taatctgtcattcttgtagggagtattagcccctttgttgaccactaaagTGGATGAACTCCATAAACGAGTGAACCAATCTAAGAAATCAGTGCCTCCCCCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtgagctgtactcctatactctttgtaccctcataacctggatattagta Alignment from Spaln_nt2Genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taatctgtcattcttgtagggagtattagcccctttgttgaccactaaagTGGATGAACTCCATAAACGAGTGAACCAATCTAAGAAATCAGTGCCTCCCCCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtgagctgtactcctatactctttgtaccctcataacctggatattagta Alignment from Pairagon TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taatctgtcattcttgtagggagtattagcccctttgttgaccactaaagTGGATGAACTCCATAAACGAGTGAACCAATCTAAGAAATCAGTGCCTCCCCCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtgagctgtactcctatactctttgtaccctcataacctggatattagta Alignment from Exonerate_protein2genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taatctgtcattcttgtagggagtattagcccctttgttgaccactaaagTGGATGAACTCCATAAACGAGTGAACCAATCTAAGAAATCAGTGCCTCCCCCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtgagctgtactcctatactctttgtaccctcataacctggatattagta Alignment from Exonerate_coding2genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taatctgtcattcttgtagggagtattagcccctttgttgaccactaaagTGGATGAACTCCATAAACGAGTGAACCAATCTAAGAAATCAGTGCCTCCCCCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtgagctgtactcctatactctttgtaccctcataacctggatattagta Alignment from GeneWise TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taatctgtcattcttgtagggagtattagcccctttgttgaccactaaagTGGATGAACTCCATAAACGAGTGAACCAATCTAAGAAATCAGTGCCTCCCCCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtgagctgtactcctatactctttgtaccctcataacctggatattagta #### 4930506M07Rik_ID12866_9 --> 0 - 0 Original Alignment ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcgtgcatgattgaaattggttcatctacgggggggttttgtctttttagATGTTTATTGAGCAAAACAAGCTGAATAGACAAAGTCACCTTGTGTTGCAGAGCTCTCTCCCAGACCAGCAGATTTTGAAAGCCTTGGATGAAAATGCAAAGCTCATCCAACAACTTGAGGAGGAGAGAATTCAGCACCAGAAAAAAgtaagtgcctacattctttatctattaacatgtaattaacatgtagaagc Alignment from CESAR ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcgtgcatgattgaaattggttcatctacgggggggttttgtctttttagATGTTTATTGAGCAAAACAAGCTGAATAGACAAAGTCACCTTGTGTTGCAGAGCTCTCTCCCAGACCAGCAGATTTTGAAAGCCTTGGATGAAAATGCAAAGCTCATCCAACAACTTGAGGAGGAGAGAATTCAGCACCAGAAAAAAgtaagtgcctacattctttatctattaacatgtaattaacatgtagaagc Alignment from Spaln_aa2Genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcgtgcatgattgaaattggttcatctacgggggggttttgtctttttagATGTTTATTGAGCAAAACAAGCTGAATAGACAAAGTCACCTTGTGTTGCAGAGCTCTCTCCCAGACCAGCAGATTTTGAAAGCCTTGGATGAAAATGCAAAGCTCATCCAACAACTTGAGGAGGAGAGAATTCAGCACCAGAAAAAAgtaagtgcctacattctttatctattaacatgtaattaacatgtagaagc Alignment from Spaln_nt2Genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcgtgcatgattgaaattggttcatctacgggggggttttgtctttttagATGTTTATTGAGCAAAACAAGCTGAATAGACAAAGTCACCTTGTGTTGCAGAGCTCTCTCCCAGACCAGCAGATTTTGAAAGCCTTGGATGAAAATGCAAAGCTCATCCAACAACTTGAGGAGGAGAGAATTCAGCACCAGAAAAAAgtaagtgcctacattctttatctattaacatgtaattaacatgtagaagc Alignment from Pairagon ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcgtgcatgattgaaattggttcatctacgggggggttttgtctttttagATGTTTATTGAGCAAAACAAGCTGAATAGACAAAGTCACCTTGTGTTGCAGAGCTCTCTCCCAGACCAGCAGATTTTGAAAGCCTTGGATGAAAATGCAAAGCTCATCCAACAACTTGAGGAGGAGAGAATTCAGCACCAGAAAAAAgtaagtgcctacattctttatctattaacatgtaattaacatgtagaagc Alignment from Exonerate_protein2genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcgtgcatgattgaaattggttcatctacgggggggttttgtctttttagATGTTTATTGAGCAAAACAAGCTGAATAGACAAAGTCACCTTGTGTTGCAGAGCTCTCTCCCAGACCAGCAGATTTTGAAAGCCTTGGATGAAAATGCAAAGCTCATCCAACAACTTGAGGAGGAGAGAATTCAGCACCAGAAAAAAgtaagtgcctacattctttatctattaacatgtaattaacatgtagaagc Alignment from Exonerate_coding2genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcgtgcatgattgaaattggttcatctacgggggggttttgtctttttagATGTTTATTGAGCAAAACAAGCTGAATAGACAAAGTCACCTTGTGTTGCAGAGCTCTCTCCCAGACCAGCAGATTTTGAAAGCCTTGGATGAAAATGCAAAGCTCATCCAACAACTTGAGGAGGAGAGAATTCAGCACCAGAAAAAAgtaagtgcctacattctttatctattaacatgtaattaacatgtagaagc Alignment from GeneWise ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcgtgcatgattgaaattggttcatctacgggggggttttgtctttttagATGTTTATTGAGCAAAACAAGCTGAATAGACAAAGTCACCTTGTGTTGCAGAGCTCTCTCCCAGACCAGCAGATTTTGAAAGCCTTGGATGAAAATGCAAAGCTCATCCAACAACTTGAGGAGGAGAGAATTCAGCACCAGAAAAAAgtaagtgcctacattctttatctattaacatgtaattaacatgtagaagc #### 4930506M07Rik_ID12871_6 --> 2 - 0 Original Alignment aaCTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tatatatccaattaaggagaatgtaatcgtcattttaataacttttttagaaCTTCAGGATCAAATTGTTGCAGTACAGGAGAAAAGGAAGGTGCTGGCTAATGAGCTCGAAAACCTCAAGGGGAAACTTGGGGAGGTGATGGAGGAAgtaagtaacctagaggcctgtcatgacctagggcagctcacaggcagtca Alignment from CESAR aaCTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tatatatccaattaaggagaatgtaatcgtcattttaataacttttttagaaCTTCAGGATCAAATTGTTGCAGTACAGGAGAAAAGGAAGGTGCTGGCTAATGAGCTCGAAAACCTCAAGGGGAAACTTGGGGAGGTGATGGAGGAAgtaagtaacctagaggcctgtcatgacctagggcagctcacaggcagtca Alignment from Spaln_aa2Genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tatatatccaattaaggagaatgtaatcgtcattttaataacttttttagAACTTCAGGATCAAATTGTTGCAGTACAGGAGAAAAGGAAGGTGCTGGCTAATGAGCTCGAAAACCTCAAGGGGAAACTTGGGGAGGTGATGGAGGAAgtaagtaacctagaggcctgtcatgacctagggcagctcacaggcagtca Alignment from Spaln_nt2Genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tatatatccaattaaggagaatgtaatcgtcattttaataacttttttagAACTTCAGGATCAAATTGTTGCAGTACAGGAGAAAAGGAAGGTGCTGGCTAATGAGCTCGAAAACCTCAAGGGGAAACTTGGGGAGGTGATGGAGGAAgtaagtaacctagaggcctgtcatgacctagggcagctcacaggcagtca Alignment from Pairagon AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tatatatccaattaaggagaatgtaatcgtcattttaataacttttttagAACTTCAGGATCAAATTGTTGCAGTACAGGAGAAAAGGAAGGTGCTGGCTAATGAGCTCGAAAACCTCAAGGGGAAACTTGGGGAGGTGATGGAGGAAgtaagtaacctagaggcctgtcatgacctagggcagctcacaggcagtca Alignment from Exonerate_protein2genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tatatatccaattaaggagaatgtaatcgtcattttaataacttttttagAACTTCAGGATCAAATTGTTGCAGTACAGGAGAAAAGGAAGGTGCTGGCTAATGAGCTCGAAAACCTCAAGGGGAAACTTGGGGAGGTGATGGAGGAAgtaagtaacctagaggcctgtcatgacctagggcagctcacaggcagtca Alignment from Exonerate_coding2genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tatatatccaattaaggagaatgtaatcgtcattttaataacttttttagAACTTCAGGATCAAATTGTTGCAGTACAGGAGAAAAGGAAGGTGCTGGCTAATGAGCTCGAAAACCTCAAGGGGAAACTTGGGGAGGTGATGGAGGAAgtaagtaacctagaggcctgtcatgacctagggcagctcacaggcagtca Alignment from GeneWise AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tatatatccaattaaggagaatgtaatcgtcattttaataacttttttagAACTTCAGGATCAAATTGTTGCAGTACAGGAGAAAAGGAAGGTGCTGGCTAATGAGCTCGAAAACCTCAAGGGGAAACTTGGGGAGGTGATGGAGGAAgtaagtaacctagaggcctgtcatgacctagggcagctcacaggcagtca #### 9130011E15Rik_ID9620_24 --> 0 - 0 Original Alignment GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG tgagttgtaggtctctggccaaaagttcttcttgtgctttttcctcacagGTGCTAGAAGTAGTGCATGCTAATTATGATACCCTCACGCTGAAGTTACAGGATGGGCTTGATCATTATGAACGCTGCGCTGAGCCACACAAGGAGGCTGCCTTCTTTAGAGAGCTAgtttgtgtcattatgtctactgatcctttttctcccccattattataaac Alignment from CESAR GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG tgagttgtaggtctctggccaaaagttcttcttgtgctttttcctcacagGTGCTAGAAGTAGTGCATGCTAATTATGATACCCTCACGCTGAAGTTACAGGATGGGCTTGATCATTATGAACGCTGCGCTGAGCCACACAAGGAGGCTGCCTTCTTTAGAGAGCTAgtttgtgtcattatgtctactgatcctttttctcccccattattataaac Alignment from Spaln_aa2Genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG tgagttgtaggtctctggccaaaagttcttcttgtgctttttcctcacagGTGCTAGAAGTAGTGCATGCTAATTATGATACCCTCACGCTGAAGTTACAGGATGGGCTTGATCATTATGAACGCTGCGCTGAGCCACACAAGGAGGCTGCCTTCTTTAGAGAGCTAgtttgtgtcattatgtctactgatcctttttctcccccattattataaac Alignment from Spaln_nt2Genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG tgagttgtaggtctctggccaaaagttcttcttgtgctttttcctcacagGTGCTAGAAGTAGTGCATGCTAATTATGATACCCTCACGCTGAAGTTACAGGATGGGCTTGATCATTATGAACGCTGCGCTGAGCCACACAAGGAGGCTGCCTTCTTTAGAGAGCTAgtttgtgtcattatgtctactgatcctttttctcccccattattataaac Alignment from Pairagon GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG tgagttgtaggtctctggccaaaagttcttcttgtgctttttcctcacagGTGCTAGAAGTAGTGCATGCTAATTATGATACCCTCACGCTGAAGTTACAGGATGGGCTTGATCATTATGAACGCTGCGCTGAGCCACACAAGGAGGCTGCCTTCTTTAGAGAGCTAgtttgtgtcattatgtctactgatcctttttctcccccattattataaac Alignment from Exonerate_protein2genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG tgagttgtaggtctctggccaaaagttcttcttgtgctttttcctcacagGTGCTAGAAGTAGTGCATGCTAATTATGATACCCTCACGCTGAAGTTACAGGATGGGCTTGATCATTATGAACGCTGCGCTGAGCCACACAAGGAGGCTGCCTTCTTTAGAGAGCTAgtttgtgtcattatgtctactgatcctttttctcccccattattataaac Alignment from Exonerate_coding2genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG tgagttgtaggtctctggccaaaagttcttcttgtgctttttcctcacagGTGCTAGAAGTAGTGCATGCTAATTATGATACCCTCACGCTGAAGTTACAGGATGGGCTTGATCATTATGAACGCTGCGCTGAGCCACACAAGGAGGCTGCCTTCTTTAGAGAGCTAgtttgtgtcattatgtctactgatcctttttctcccccattattataaac Alignment from GeneWise GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG tgagttgtaggtctctggccaaaagttcttcttgtgctttttcctcacagGTGCTAGAAGTAGTGCATGCTAATTATGATACCCTCACGCTGAAGTTACAGGATGGGCTTGATCATTATGAACGCTGCGCTGAGCCACACAAGGAGGCTGCCTTCTTTAGAGAGCTAgtttgtgtcattatgtctactgatcctttttctcccccattattataaac #### 9130011E15Rik_ID9653_18 --> 2 - 2 Original Alignment acCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATct tccaacttcatgaagagcacaaatataaccctggttccatctcatactagacCTAATGGTGGAGTTCATTGTGACACACATGATGAAGGAATTCCCTATGGATCTCTATctgtaattaaaatgaatttgcctaaatgcaacaagtaataaggtgacaaaaa Alignment from CESAR acCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATct tccaacttcatgaagagcacaaatataaccctggttccatctcatactagacCTAATGGTGGAGTTCATTGTGACACACATGATGAAGGAATTCCCTATGGATCTCTATctgtaattaaaatgaatttgcctaaatgcaacaagtaataaggtgacaaaaa Alignment from Spaln_aa2Genome ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT tccaacttcatgaagagcacaaatataaccctggttccatctcatactagACCTAATGGTGGAGTTCATTGTGACACACATGATGAAGGAATTCCCTATGGATCTCTATCTgtaattaaaatgaatttgcctaaatgcaacaagtaataaggtgacaaaaa Alignment from Spaln_nt2Genome ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT tccaacttcatgaagagcacaaatataaccctggttccatctcatactagACCTAATGGTGGAGTTCATTGTGACACACATGATGAAGGAATTCCCTATGGATCTCTATCTgtaattaaaatgaatttgcctaaatgcaacaagtaataaggtgacaaaaa Alignment from Pairagon ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT tccaacttcatgaagagcacaaatataaccctggttccatctcatactagACCTAATGGTGGAGTTCATTGTGACACACATGATGAAGGAATTCCCTATGGATCTCTATCTgtaattaaaatgaatttgcctaaatgcaacaagtaataaggtgacaaaaa Alignment from Exonerate_protein2genome ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT tccaacttcatgaagagcacaaatataaccctggttccatctcatactagACCTAATGGTGGAGTTCATTGTGACACACATGATGAAGGAATTCCCTATGGATCTCTATCTgtaattaaaatgaatttgcctaaatgcaacaagtaataaggtgacaaaaa Alignment from Exonerate_coding2genome ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT tccaacttcatgaagagcacaaatataaccctggttccatctcatactagACCTAATGGTGGAGTTCATTGTGACACACATGATGAAGGAATTCCCTATGGATCTCTATCTgtaattaaaatgaatttgcctaaatgcaacaagtaataaggtgacaaaaa Alignment from GeneWise ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT tccaacttcatgaagagcacaaatataaccctggttccatctcatactagACCTAATGGTGGAGTTCATTGTGACACACATGATGAAGGAATTCCCTATGGATCTCTATCTgtaattaaaatgaatttgcctaaatgcaacaagtaataaggtgacaaaaa #### 9130011E15Rik_ID9658_14 --> 2 - 1 Original Alignment ttATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAg tgctaaatccatgaagctcattttatataaactcctatgacatcctccagttATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAggtaccacatgtatagcagtgacaggtctactctttttgtgtcagaacagc Alignment from CESAR ttATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAg tgctaaatccatgaagctcattttatataaactcctatgacatcctccagttATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAggtaccacatgtatagcagtgacaggtctactctttttgtgtcagaacagc Alignment from Spaln_aa2Genome TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG tgctaaatccatgaagctcattttatataaactcctatgacatcctccagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaccacatgtatagcagtgacaggtctactctttttgtgtcagaacagc Alignment from Spaln_nt2Genome TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG tgctaaatccatgaagctcattttatataaactcctatgacatcctccagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaccacatgtatagcagtgacaggtctactctttttgtgtcagaacagc Alignment from Pairagon TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG tgctaaatccatgaagctcattttatataaactcctatgacatcctccagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaccacatgtatagcagtgacaggtctactctttttgtgtcagaacagc Alignment from Exonerate_protein2genome TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG tgctaaatccatgaagctcattttatataaactcctatgacatcctccagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaccacatgtatagcagtgacaggtctactctttttgtgtcagaacagc Alignment from Exonerate_coding2genome TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG tgctaaatccatgaagctcattttatataaactcctatgacatcctccagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaccacatgtatagcagtgacaggtctactctttttgtgtcagaacagc Alignment from GeneWise TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG tgctaaatccatgaagctcattttatataaactcctatgacatcctccagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaccacatgtatagcagtgacaggtctactctttttgtgtcagaacagc #### 9130011E15Rik_ID9666_11 --> 0 - 2 Original Alignment GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTAca ggtgagggcagtacaattggagcacctgttgccttttgtcttccctacagGTGGGCAGCATGTTCATAGCAGATGCGCATGAGAAACTCTCAGTAcagtacaatagacttatttgcgagattttcattttgaagggtagtctcattc Alignment from CESAR GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTAca ggtgagggcagtacaattggagcacctgttgccttttgtcttccctacagGTGGGCAGCATGTTCATAGCAGATGCGCATGAGAAACTCTCAGTAcagtacaatagacttatttgcgagattttcattttgaagggtagtctcattc Alignment from Spaln_aa2Genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ggtgagggcagtacaattggagcacctgttgccttttgtcttccctacagGTGGGCAGCATGTTCATAGCAGATGCGCATGAGAAACTCTCAGTACAgtacaatagacttatttgcgagattttcattttgaagggtagtctcattc Alignment from Spaln_nt2Genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ggtgagggcagtacaattggagcacctgttgccttttgtcttccctacagGTGGGCAGCATGTTCATAGCAGATGCGCATGAGAAACTCTCAGTACAgtacaatagacttatttgcgagattttcattttgaagggtagtctcattc Alignment from Pairagon GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ggtgagggcagtacaattggagcacctgttgccttttgtcttccctacagGTGGGCAGCATGTTCATAGCAGATGCGCATGAGAAACTCTCAGTACAgtacaatagacttatttgcgagattttcattttgaagggtagtctcattc Alignment from Exonerate_protein2genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ggtgagggcagtacaattggagcacctgttgccttttgtcttccctacagGTGGGCAGCATGTTCATAGCAGATGCGCATGAGAAACTCTCAGTACAgtacaatagacttatttgcgagattttcattttgaagggtagtctcattc Alignment from Exonerate_coding2genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ggtgagggcagtacaattggagcacctgttgccttttgtcttccctacagGTGGGCAGCATGTTCATAGCAGATGCGCATGAGAAACTCTCAGTACAgtacaatagacttatttgcgagattttcattttgaagggtagtctcattc Alignment from GeneWise GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ggtgagggcagtacaattggagcacctgttgccttttgtcttccctacagGTGGGCAGCATGTTCATAGCAGATGCGCATGAGAAACTCTCAGTACAgtacaatagacttatttgcgagattttcattttgaagggtagtctcattc #### 9130011E15Rik_ID9669_9 --> 0 - 2 Original Alignment GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACag ccccaatagtgcttaccttagagccaagctttgcaattgtcaaattacagGGAATGGGACTTGTGATTACGCAGTCTTTGTCTGAGTATAATaggtaagctagcaatccagaacaaatgagcccattagtgggcccattagaaa Alignment from CESAR GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACag ccccaatagtgcttaccttagagccaagctttgcaattgtcaaattacagGGAATGGGACTTGTGATTACGCAGTCTTTGTCTGAGTATAATaggtaagctagcaatccagaacaaatgagcccattagtgggcccattagaaa Alignment from Spaln_aa2Genome GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG ccccaatagtgcttaccttagagccaagctttgcaattgtcaaattacagGGAATGGGACTTGTGATTACGCAGTCTTTGTCTGAGTATAATAGgtaagctagcaatccagaacaaatgagcccattagtgggcccattagaaa Alignment from Spaln_nt2Genome GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG ccccaatagtgcttaccttagagccaagctttgcaattgtcaaattacagGGAATGGGACTTGTGATTACGCAGTCTTTGTCTGAGTATAATAGgtaagctagcaatccagaacaaatgagcccattagtgggcccattagaaa Alignment from Pairagon GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG ccccaatagtgcttaccttagagccaagctttgcaattgtcaaattacagGGAATGGGACTTGTGATTACGCAGTCTTTGTCTGAGTATAATAGgtaagctagcaatccagaacaaatgagcccattagtgggcccattagaaa Alignment from Exonerate_protein2genome GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG ccccaatagtgcttaccttagagccaagctttgcaattgtcaaattacagGGAATGGGACTTGTGATTACGCAGTCTTTGTCTGAGTATAATAGgtaagctagcaatccagaacaaatgagcccattagtgggcccattagaaa Alignment from Exonerate_coding2genome ccccaatagtgcttaccttagagccaagctttgcaattgtcaaattacagggaatgggacttgtgattacgcagtctttgtctgagtataataggtaagctagcaatccagaacaaatgagcccattagtgggcccattagaaa Alignment from GeneWise GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG ccccaatagtgcttaccttagagccaagctttgcaattgtcaaattacagGGAATGGGACTTGTGATTACGCAGTCTTTGTCTGAGTATAATAGgtaagctagcaatccagaacaaatgagcccattagtgggcccattagaaa #### 9130011E15Rik_ID9676_5 --> 0 - 0 Original Alignment AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT tcttgtagtagtgggtaacccagcatcaaaagcaatgcctgtattttcagAACCTGATGGAAAGTTTGGATTCACTACTATCTGCGGAAGGATCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTATTTGCTCAGTGACTgtaagcgttgttgtgcagtaaagcagaacatgttgctttccattgtaaaa Alignment from CESAR AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT tcttgtagtagtgggtaacccagcatcaaaagcaatgcctgtattttcagAACCTGATGGAAAGTTTGGATTCACTACTATCTGCGGAAGGATCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTATTTGCTCAGTGACTgtaagcgttgttgtgcagtaaagcagaacatgttgctttccattgtaaaa Alignment from Spaln_aa2Genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT tcttgtagtagtgggtaacccagcatcaaaagcaatgcctgtattttcagAACCTGATGGAAAGTTTGGATTCACTACTATCTGCGGAAGGATCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTATTTGCTCAGTGACTgtaagcgttgttgtgcagtaaagcagaacatgttgctttccattgtaaaa Alignment from Spaln_nt2Genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT tcttgtagtagtgggtaacccagcatcaaaagcaatgcctgtattttcagAACCTGATGGAAAGTTTGGATTCACTACTATCTGCGGAAGGATCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTATTTGCTCAGTGACTgtaagcgttgttgtgcagtaaagcagaacatgttgctttccattgtaaaa Alignment from Pairagon AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT tcttgtagtagtgggtaacccagcatcaaaagcaatgcctgtattttcagAACCTGATGGAAAGTTTGGATTCACTACTATCTGCGGAAGGATCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTATTTGCTCAGTGACTgtaagcgttgttgtgcagtaaagcagaacatgttgctttccattgtaaaa Alignment from Exonerate_protein2genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT tcttgtagtagtgggtaacccagcatcaaaagcaatgcctgtattttcagAACCTGATGGAAAGTTTGGATTCACTACTATCTGCGGAAGGATCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTATTTGCTCAGTGACTgtaagcgttgttgtgcagtaaagcagaacatgttgctttccattgtaaaa Alignment from Exonerate_coding2genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT tcttgtagtagtgggtaacccagcatcaaaagcaatgcctgtattttcagAACCTGATGGAAAGTTTGGATTCACTACTATCTGCGGAAGGATCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTATTTGCTCAGTGACTgtaagcgttgttgtgcagtaaagcagaacatgttgctttccattgtaaaa Alignment from GeneWise AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT tcttgtagtagtgggtaacccagcatcaaaagcaatgcctgtattttcagAACCTGATGGAAAGTTTGGATTCACTACTATCTGCGGAAGGATCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTATTTGCTCAGTGACTgtaagcgttgttgtgcagtaaagcagaacatgttgctttccattgtaaaa #### A1cf_ID6643_5 --> 2 - 1 Original Alignment gaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAg cacaagatccacaaaattcagcttatcttttttctcaaaataatacacagggAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCGGAGGTGAAGGTTGATGAAGACTCAATGTCATCTGTGAAGATACTGTACAAAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCGggtgagtccagagcaacacatcattagatctcttgacaccagatgggctgt Alignment from CESAR gaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAg cacaagatccacaaaattcagcttatcttttttctcaaaataatacacagggAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCGGAGGTGAAGGTTGATGAAGACTCAATGTCATCTGTGAAGATACTGTACAAAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCGggtgagtccagagcaacacatcattagatctcttgacaccagatgggctgt Alignment from Spaln_aa2Genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG cacaagatccacaaaattcagcttatcttttttctcaaaataatacacagGGAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCGGAGGTGAAGGTTGATGAAGACTCAATGTCATCTGTGAAGATACTGTACAAAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCGGgtgagtccagagcaacacatcattagatctcttgacaccagatgggctgt Alignment from Spaln_nt2Genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG cacaagatccacaaaattcagcttatcttttttctcaaaataatacacagGGAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCGGAGGTGAAGGTTGATGAAGACTCAATGTCATCTGTGAAGATACTGTACAAAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCGGgtgagtccagagcaacacatcattagatctcttgacaccagatgggctgt Alignment from Pairagon GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG cacaagatccacaaaattcagcttatcttttttctcaaaataatacacagGGAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCGGAGGTGAAGGTTGATGAAGACTCAATGTCATCTGTGAAGATACTGTACAAAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCGGgtgagtccagagcaacacatcattagatctcttgacaccagatgggctgt Alignment from Exonerate_protein2genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG cacaagatccacaaaattcagcttatcttttttctcaaaataatacacagGGAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCGGAGGTGAAGGTTGATGAAGACTCAATGTCATCTGTGAAGATACTGTACAAAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCGGgtgagtccagagcaacacatcattagatctcttgacaccagatgggctgt Alignment from Exonerate_coding2genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG cacaagatccacaaaattcagcttatcttttttctcaaaataatacacagGGAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCGGAGGTGAAGGTTGATGAAGACTCAATGTCATCTGTGAAGATACTGTACAAAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCGGgtgagtccagagcaacacatcattagatctcttgacaccagatgggctgt Alignment from GeneWise AATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG cacaagatccacaaaattcagcttatcttttttctcaaaataatacacagggagAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCGGAGGTGAAGGTTGATGAAGACTCAATGTCATCTGTGAAGATACTGTACAAAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCGGgtgagtccagagcaacacatcattagatctcttgacaccagatgggctgt #### A1cf_ID6645_7 --> 0 - 1 Original Alignment GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACA------ACCTACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAg ccaatggttgagcccagacccaaggctttgacccccccgcccttccacagGTGCTGGATGGGTCCCCAATAGAGGTAACACTAGCAAAGCCTGTAGACAAAGAGAGTTATGTG---AATACCCAGGGGGCAGGTGGCAGGAACAGTATGCTACAAGGAGAGTATACCTACCCACTGAGCCATGTTTATGACCCTACAACATCCTACCCCTACCTTGGAGCAGCTGTCTTCTATACCCCCCAAGCTTATGCAGACATCCCAAGTCTTCATTTCACAGCTACTAAGGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCAGTCAGAggtaagctgtctagatcttgttttttaaaaggcctggtgttattgattctt Alignment from CESAR GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACC------TACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAg ccaatggttgagcccagacccaaggctttgacccccccgcccttccacagGTGCTGGATGGGTCCCCAATAGAGGTAACACTAGCAAAGCCTGTAGACAAAGAGAGTTATGTGAAT---ACCCAGGGGGCAGGTGGCAGGAACAGTATGCTACAAGGAGAGTATACCTACCCACTGAGCCATGTTTATGACCCTACAACATCCTACCCCTACCTTGGAGCAGCTGTCTTCTATACCCCCCAAGCTTATGCAGACATCCCAAGTCTTCATTTCACAGCTACTAAGGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCAGTCAGAggtaagctgtctagatcttgttttttaaaaggcctggtgttattgattctt Alignment from Spaln_aa2Genome GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACC------TACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG ccaatggttgagcccagacccaaggctttgacccccccgcccttccacagGTGCTGGATGGGTCCCCAATAGAGGTAACACTAGCAAAGCCTGTAGACAAAGAGAGTTATGTGAAT---ACCCAGGGGGCAGGTGGCAGGAACAGTATGCTACAAGGAGAGTATACCTACCCACTGAGCCATGTTTATGACCCTACAACATCCTACCCCTACCTTGGAGCAGCTGTCTTCTATACCCCCCAAGCTTATGCAGACATCCCAAGTCTTCATTTCACAGCTACTAAGGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCAGTCAGAGgtaagctgtctagatcttgttttttaaaaggcctggtgttattgattctt Alignment from Spaln_nt2Genome GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACCTACC------TTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG ccaatggttgagcccagacccaaggctttgacccccccgcccttccacagGTGCTGGATGGGTCCCCAATAGAGGTAACACTAGCAAAGCCTGTAGACAAAGAGAGTTATGT---GAATACCCAGGGGGCAGGTGGCAGGAACAGTATGCTACAAGGAGAGTATACCTACCCACTGAGCCATGTTTATGACCCTACAACATCCTACCCCTACCTTGGAGCAGCTGTCTTCTATACCCCCCAAGCTTATGCAGACATCCCAAGTCTTCATTTCACAGCTACTAAGGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCAGTCAGAGgtaagctgtctagatcttgttttttaaaaggcctggtgttattgattctt Alignment from Pairagon GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACA------ACCTACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG ccaatggttgagcccagacccaaggctttgacccccccgcccttccacagGTGCTGGATGGGTCCCCAATAGAGGTAACACTAGCAAAGCCTGTAGACAAAGAGAGTTATGTGA---ATACCCAGGGGGCAGGTGGCAGGAACAGTATGCTACAAGGAGAGTATACCTACCCACTGAGCCATGTTTATGACCCTACAACATCCTACCCCTACCTTGGAGCAGCTGTCTTCTATACCCCCCAAGCTTATGCAGACATCCCAAGTCTTCATTTCACAGCTACTAAGGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCAGTCAGAGgtaagctgtctagatcttgttttttaaaaggcctggtgttattgattctt Alignment from Exonerate_protein2genome GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACC------TACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG ccaatggttgagcccagacccaaggctttgacccccccgcccttccacagGTGCTGGATGGGTCCCCAATAGAGGTAACACTAGCAAAGCCTGTAGACAAAGAGAGTTATGTGAAT---ACCCAGGGGGCAGGTGGCAGGAACAGTATGCTACAAGGAGAGTATACCTACCCACTGAGCCATGTTTATGACCCTACAACATCCTACCCCTACCTTGGAGCAGCTGTCTTCTATACCCCCCAAGCTTATGCAGACATCCCAAGTCTTCATTTCACAGCTACTAAGGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCAGTCAGAGgtaagctgtctagatcttgttttttaaaaggcctggtgttattgattctt Alignment from Exonerate_coding2genome GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACC------TACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG ccaatggttgagcccagacccaaggctttgacccccccgcccttccacagGTGCTGGATGGGTCCCCAATAGAGGTAACACTAGCAAAGCCTGTAGACAAAGAGAGTTATGTGAAT---ACCCAGGGGGCAGGTGGCAGGAACAGTATGCTACAAGGAGAGTATACCTACCCACTGAGCCATGTTTATGACCCTACAACATCCTACCCCTACCTTGGAGCAGCTGTCTTCTATACCCCCCAAGCTTATGCAGACATCCCAAGTCTTCATTTCACAGCTACTAAGGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCAGTCAGAGgtaagctgtctagatcttgttttttaaaaggcctggtgttattgattctt Alignment from GeneWise GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACC------TACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG ccaatggttgagcccagacccaaggctttgacccccccgcccttccacagGTGCTGGATGGGTCCCCAATAGAGGTAACACTAGCAAAGCCTGTAGACAAAGAGAGTTATGTGAAT---ACCCAGGGGGCAGGTGGCAGGAACAGTATGCTACAAGGAGAGTATACCTACCCACTGAGCCATGTTTATGACCCTACAACATCCTACCCCTACCTTGGAGCAGCTGTCTTCTATACCCCCCAAGCTTATGCAGACATCCCAAGTCTTCATTTCACAGCTACTAAGGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCAGTCAGAGgtaagctgtctagatcttgttttttaaaaggcctggtgttattgattctt #### A630007B06Rik_ID12193_4 --> 0 - 0 Original Alignment GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG caagagctgaaggtgcagtgaacattgaacacccacacacatactcccagGCAAATAAAAAATGCGAAGAGGCCCATCAGGAGAAGGAGGCTATGGTAATGAAGTATGTAAGAGGTGAGAAGGAGGCACTTGATCTGCAGAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTTTCTCAGGATAAAGGGCGCCTACAGCAACTTTATGAATCCCAAgtaagaagtataaccagtgtctgtttgcccttagttccccagttttagca Alignment from CESAR GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG caagagctgaaggtgcagtgaacattgaacacccacacacatactcccagGCAAATAAAAAATGCGAAGAGGCCCATCAGGAGAAGGAGGCTATGGTAATGAAGTATGTAAGAGGTGAGAAGGAGGCACTTGATCTGCAGAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTTTCTCAGGATAAAGGGCGCCTACAGCAACTTTATGAATCCCAAgtaagaagtataaccagtgtctgtttgcccttagttccccagttttagca Alignment from Spaln_aa2Genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG caagagctgaaggtgcagtgaacattgaacacccacacacatactcccagGCAAATAAAAAATGCGAAGAGGCCCATCAGGAGAAGGAGGCTATGGTAATGAAGTATGTAAGAGGTGAGAAGGAGGCACTTGATCTGCAGAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTTTCTCAGGATAAAGGGCGCCTACAGCAACTTTATGAATCCCAAgtaagaagtataaccagtgtctgtttgcccttagttccccagttttagca Alignment from Spaln_nt2Genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG caagagctgaaggtgcagtgaacattgaacacccacacacatactcccagGCAAATAAAAAATGCGAAGAGGCCCATCAGGAGAAGGAGGCTATGGTAATGAAGTATGTAAGAGGTGAGAAGGAGGCACTTGATCTGCAGAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTTTCTCAGGATAAAGGGCGCCTACAGCAACTTTATGAATCCCAAgtaagaagtataaccagtgtctgtttgcccttagttccccagttttagca Alignment from Pairagon GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG caagagctgaaggtgcagtgaacattgaacacccacacacatactcccagGCAAATAAAAAATGCGAAGAGGCCCATCAGGAGAAGGAGGCTATGGTAATGAAGTATGTAAGAGGTGAGAAGGAGGCACTTGATCTGCAGAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTTTCTCAGGATAAAGGGCGCCTACAGCAACTTTATGAATCCCAAgtaagaagtataaccagtgtctgtttgcccttagttccccagttttagca Alignment from Exonerate_protein2genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG caagagctgaaggtgcagtgaacattgaacacccacacacatactcccagGCAAATAAAAAATGCGAAGAGGCCCATCAGGAGAAGGAGGCTATGGTAATGAAGTATGTAAGAGGTGAGAAGGAGGCACTTGATCTGCAGAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTTTCTCAGGATAAAGGGCGCCTACAGCAACTTTATGAATCCCAAgtaagaagtataaccagtgtctgtttgcccttagttccccagttttagca Alignment from Exonerate_coding2genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG caagagctgaaggtgcagtgaacattgaacacccacacacatactcccagGCAAATAAAAAATGCGAAGAGGCCCATCAGGAGAAGGAGGCTATGGTAATGAAGTATGTAAGAGGTGAGAAGGAGGCACTTGATCTGCAGAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTTTCTCAGGATAAAGGGCGCCTACAGCAACTTTATGAATCCCAAgtaagaagtataaccagtgtctgtttgcccttagttccccagttttagca Alignment from GeneWise GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG caagagctgaaggtgcagtgaacattgaacacccacacacatactcccagGCAAATAAAAAATGCGAAGAGGCCCATCAGGAGAAGGAGGCTATGGTAATGAAGTATGTAAGAGGTGAGAAGGAGGCACTTGATCTGCAGAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTTTCTCAGGATAAAGGGCGCCTACAGCAACTTTATGAATCCCAAgtaagaagtataaccagtgtctgtttgcccttagttccccagttttagca #### AI846148_ID2141_5 --> 2 - 1 Original Alignment acCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAg aaagcatggacatacagaagcatgctttgatgttgaatatttattctaagatCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGTTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGGGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAggtgagtccccctagagggaaagccaatcaatagttacaggggcatgtgta Alignment from CESAR acCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAg aaagcatggacatacagaagcatgctttgatgttgaatatttattctaagatCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGTTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGGGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAggtgagtccccctagagggaaagccaatcaatagttacaggggcatgtgta Alignment from Spaln_aa2Genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG aaagcatggacatacagaagcatgctttgatgttgaatatttattctaagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGTTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGGGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtgagtccccctagagggaaagccaatcaatagttacaggggcatgtgta Alignment from Spaln_nt2Genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG aaagcatggacatacagaagcatgctttgatgttgaatatttattctaagATCCCCCATCCCCAG---CACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACA---CACTGATGGTTGCTTCCC------CTTTGTTCTTCAGTTATTCTCTCA---TCAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGGGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtgagtccccctagagggaaagccaatcaatagttacaggggcatgtgta Alignment from Pairagon ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG aaagcatggacatacagaagcatgctttgatgttgaatatttattctaagATCCCCCATCCCCAG---CACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACA---CACTGATGGTTGCTTCCC------CTTTGTTCTTCAGTTATTCTCTCA---TCAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGGGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtgagtccccctagagggaaagccaatcaatagttacaggggcatgtgta Alignment from Exonerate_protein2genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG aaagcatggacatacagaagcatgctttgatgttgaatatttattctaagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGTTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGGGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtgagtccccctagagggaaagccaatcaatagttacaggggcatgtgta Alignment from Exonerate_coding2genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG aaagcatggacatacagaagcatgctttgatgttgaatatttattctaagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGTTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGGGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtgagtccccctagagggaaagccaatcaatagttacaggggcatgtgta Alignment from GeneWise ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG aaagcatggacatacagaagcatgctttgatgttgaatatttattctaagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGTTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGGGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtgagtccccctagagggaaagccaatcaatagttacaggggcatgtgta #### Abcc2_ID8831_15 --> 2 - 2 Original Alignment atAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAga atttttttgggggctcaacatgtcagcaggacttattctgcccctcacagatAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTCAGAAGCAACAATACAGgagtatgtttctggagtcagcaagcatatgagctgcctgtcaatggtgaaaa Alignment from CESAR atAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAga atttttttgggggctcaacatgtcagcaggacttattctgcccctcacagatAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTCAGAAGCAACAATACAGgagtatgtttctggagtcagcaagcatatgagctgcctgtcaatggtgaaaa Alignment from Spaln_aa2Genome ATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAGA atttttttgggggctcaacatgtcagcaggacttattctgcccctcacagATAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTCAGAAGCAACAATACAGGAgtatgtttctggagtcagcaagcatatgagctgcctgtcaatggtgaaaa Alignment from Spaln_nt2Genome ATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAGA atttttttgggggctcaacatgtcagcaggacttattctgcccctcacagATAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTCAGAAGCAACAATACAGGAgtatgtttctggagtcagcaagcatatgagctgcctgtcaatggtgaaaa Alignment from Pairagon ATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAGA atttttttgggggctcaacatgtcagcaggacttattctgcccctcacagATAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTCAGAAGCAACAATACAGGAgtatgtttctggagtcagcaagcatatgagctgcctgtcaatggtgaaaa Alignment from Exonerate_protein2genome ATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAGA atttttttgggggctcaacatgtcagcaggacttattctgcccctcacagATAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTCAGAAGCAACAATACAGGAgtatgtttctggagtcagcaagcatatgagctgcctgtcaatggtgaaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAGA atttttttgggggctcaacatgtcagcaggacttattctgcccctcacagATAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTCAGAAGCAACAATACAGGAgtatgtttctggagtcagcaagcatatgagctgcctgtcaatggtgaaaa #### Abcc2_ID8835_19 --> 0 - 1 Original Alignment ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAg catatgtaagtttgggtgagagagaataatacattttgttttcattccagACACAGATCTTGGTTACCCACAGTGTTCACTTCCTCCCTCAAGTGGATGACATAGTGATTCTGGGGAAAGGCAACATCTTAGAGAAAGGGTCCTAT---GGG---ATGGGCAGGAAAGGGGTGATTGCCAAAAACTGGAGGACTTTCATGAGACATTCT------AAAGGGGAGGCTACAggtaaacgggagccacaaaatgcagcagtgcttggggtcttcatggggcaa Alignment from CESAR ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAg catatgtaagtttgggtgagagagaataatacattttgttttcattccagACACAGATCTTGGTTACCCACAGTGTTCACTTCCTCCCTCAAGTGGATGACATAGTGATTCTGGGGAAAGGCAACATCTTAGAGAAAGGGTCCTATGGG------ATGGGCAGGAAAGGGGTGATTGCCAAAAACTGGAGGACTTTCATGAGACATTCT------AAAGGGGAGGCTACAggtaaacgggagccacaaaatgcagcagtgcttggggtcttcatggggcaa Alignment from Spaln_aa2Genome ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAG catatgtaagtttgggtgagagagaataatacattttgttttcattccagACACAGATCTTGGTTACCCACAGTGTTCACTTCCTCCCTCAAGTGGATGACATAGTGATTCTGGGGAAAGGCAACATCTTAGAGAAAGGGTCCTATGGG------ATGGGCAGGAAAGGGGTGATTGCCAAAAACTGGAGGACTTTCATGAGACATTCT------AAAGGGGAGGCTACAGgtaaacgggagccacaaaatgcagcagtgcttggggtcttcatggggcaa Alignment from Spaln_nt2Genome ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAG catatgtaagtttgggtgagagagaataatacattttgttttcattccagACACAGATCTTGGTTACCCACAGTGTTCACTTCCTCCCTCAAGTGGATGACATAGTGATTCTGGGGAAAGGCAACATCTTAGAGAAAGGGTCCTATGG------GATGGGCAGGAAAGGGGTGATTGCCAAAAACTGGAGGACTTTCATGAGACATT------CTAAAGGGGAGGCTACAGgtaaacgggagccacaaaatgcagcagtgcttggggtcttcatggggcaa Alignment from Pairagon ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAG catatgtaagtttgggtgagagagaataatacattttgttttcattccagACACAGATCTTGGTTACCCACAGTGTTCACTTCCTCCCTCAAGTGGATGACATAGTGATTCTGGGGAAAGGCAACATCTTAGAGAAAGGGTCCTATGG------GATGGGCAGGAAAGGGGTGATTGCCAAAAACTGGAGGACTTTCATGAGACATT------CTAAAGGGGAGGCTACAGgtaaacgggagccacaaaatgcagcagtgcttggggtcttcatggggcaa Alignment from Exonerate_protein2genome ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGG catatgtaagtttgggtgagagagaataatacattttgttttcattccagACACAGATCTTGGTTACCCACAGTGTTCACTTCCTCCCTCAAGTGGATGACATAGTGATTCTGGGGAAAGGCAACATCTTAGAGAAAGGGTCCTATGGG------ATGGGCAGGAAAGGGGTGATTGCCAAAAACTGGAGGACTTTCATGAGACATTCTAAAGGGGAGGCTACAGgtaaacgggagccacaaaatgcagcagtgcttggggtcttcatggggcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAG catatgtaagtttgggtgagagagaataatacattttgttttcattccagACACAGATCTTGGTTACCCACAGTGTTCACTTCCTCCCTCAAGTGGATGACATAGTGATTCTGGGGAAAGGCAACATCTTAGAGAAAGGGTCCTATGGG------ATGGGCAGGAAAGGGGTGATTGCCAAAAACTGGAGGACTTTCATGAGACATTCT------AAAGGGGAGGCTACAGgtaaacgggagccacaaaatgcagcagtgcttggggtcttcatggggcaa #### Abcc2_ID8837_21 --> 1 - 0 Original Alignment cTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG cagctttatatcacaccatgtggtccattttcattgtcttccctgtgtagcTCA---TCAGGCAGCAGGTGTGGTAAGTCCCTAAAAAGTTCCTTAAAA------------AATGTTTTAAAT---AAAGCAGAAGTAGTAAAG---CAGAAAATAATAAAGAAAGAGTTCGTGGAGACTGGTAAGgtaagtacaaacacatgcaactattgttgggacccattaaccctgcagca Alignment from CESAR cTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG cagctttatatcacaccatgtggtccattttcattgtcttccctgtgtagcTCA---TCAGGCAGCAGGTGTGGTAAGTCCCTAAAAAGTTCCTTAAAA------------AATGTTTTAAAT---AAAGCAGAAGTAGTAAAG---CAGAAAATAATAAAGAAAGAGTTCGTGGAGACTGGTAAGgtaagtacaaacacatgcaactattgttgggacccattaaccctgcagca Alignment from Spaln_aa2Genome CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG cagctttatatcacaccatgtggtccattttcattgtcttccctgtgtagCTCA---TCAGGCAGCAGGTGTGGTAAGTCCCTAAAAAGTTCCTTAAAA------------AATGTTTTAAAT---AAAGCAGAAGTAGTAAAG---CAGAAAATAATAAAGAAAGAGTTCGTGGAGACTGGTAAGgtaagtacaaacacatgcaactattgttgggacccattaaccctgcagca Alignment from Spaln_nt2Genome CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG cagctttatatcacaccatgtggtccattttcattgtcttccctgtgtagCTC---ATCAGGCAGCAGGTGTGGTAAGTCCCTAAAAAGTTCCTTAAAA------------AATGTTTTAAATA--AAGCA-GAAGTAGT-AAAG--CAGAAAATAATAAAGAAAGAGTTCGTGGAGACTGGTAAGgtaagtacaaacacatgcaactattgttgggacccattaaccctgcagca Alignment from Pairagon GCAGCTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTT------------------------------------GAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG cagctttatatcacaccatgtggtccattttcattgtcttccctgtgtagctcatcag---------------GCAGCAGGTGTGGTAAGTCCCTAAAAAGTTCCTTAAAAAATGTTTTAAATAAAGCAGAAGTAGTAAAGCAGAAAA------------------------------------------------------TAATAAAGAAAGAGTTCGTGGAGACTGGTAAGgtaagtacaaacacatgcaactattgttgggacccattaaccctgcagca Alignment from Exonerate_protein2genome CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG cagctttatatcacaccatgtggtccattttcattgtcttccctgtgTAGCTCATCAGGCAGCAGGTGTGGTAAGTCCCTAAAAAGTTCCTTAAAA------------AATGTTTTAAAT---AAAGCAGAAGTAGTAAAG---CAGAAAATAATAAAGAAAGAGTTCGTGGAGACTGGTAAGgtaagtacaaacacatgcaactattgttgggacccattaaccctgcagca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG cagctttatatcacaccatgtggtccattttcattgtcttccctgtgtagCTCA---TCAGGCAGCAGGTGTGGTAAGTCCCTAAAAAGTTCCTTAAAA------------AATGTTTTAAATAAA---GCAGAAGTAGTAAAG---CAGAAAATAATAAAGAAAGAGTTCGTGGAGACTGGTAAGgtaagtacaaacacatgcaactattgttgggacccattaaccctgcagca #### Abcc2_ID8840_24 --> 0 - 0 Original Alignment GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGCACT---CTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttgaaagttcaaaggttgactgactcttcacactgttttcttcctgcagGATGTCTCTACTGTAGATGATACACTTCCACAGACTTTCCAAAGTTGGTTGCTATGCTTCTTTGGCATAGTCAGTACCACACTAGTGACAACCTGCATGGCTGCACCGATCTTACTCATCAAAGTTGTTCCACTAAGTATTCTCTGCGTCTCAGTGCAGgtaaatccttcatctcccactcatccagttagttcctgaaaactccccgt Alignment from CESAR GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGCACT---CTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttgaaagttcaaaggttgactgactcttcacactgttttcttcctgcagGATGTCTCTACTGTAGATGATACACTTCCACAGACTTTCCAAAGTTGGTTGCTATGCTTCTTTGGCATAGTCAGTACCACACTAGTGACAACCTGCATGGCTGCACCGATCTTACTCATCAAAGTTGTTCCACTAAGTATTCTCTGCGTCTCAGTGCAGgtaaatccttcatctcccactcatccagttagttcctgaaaactccccgt Alignment from Spaln_aa2Genome GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGC---ACTCTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttgaaagttcaaaggttgactgactcttcacactgttttcttcctgcagGATGTCTCTACTGTAGATGATACACTTCCACAGACTTTCCAAAGTTGGTTGCTATGCTTCTTTGGCATAGTCAGTACCACACTAGTGACAACCTGCATGGCTGCACCGATCTTACTCATCAAAGTTGTTCCACTAAGTATTCTCTGCGTCTCAGTGCAGgtaaatccttcatctcccactcatccagttagttcctgaaaactccccgt Alignment from Spaln_nt2Genome GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAG---CACTCTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttgaaagttcaaaggttgactgactcttcacactgttttcttcctgcagGATGTCTCTACTGTAGATGATACACTTCCACAGACTTTCCAAAGTTGGTTGCTATGCTTCTTTGGCATAGTCAGTACCACACTAGTGACAACCTGCATGGCTGCACCGATCTTACTCATCAAAGTTGTTCCACTAAGTATTCTCTGCGTCTCAGTGCAGgtaaatccttcatctcccactcatccagttagttcctgaaaactccccgt Alignment from Pairagon GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAG---CACTCTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttgaaagttcaaaggttgactgactcttcacactgttttcttcctgcagGATGTCTCTACTGTAGATGATACACTTCCACAGACTTTCCAAAGTTGGTTGCTATGCTTCTTTGGCATAGTCAGTACCACACTAGTGACAACCTGCATGGCTGCACCGATCTTACTCATCAAAGTTGTTCCACTAAGTATTCTCTGCGTCTCAGTGCAGgtaaatccttcatctcccactcatccagttagttcctgaaaactccccgt Alignment from Exonerate_protein2genome GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGC---ACTCTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttgaaagttcaaaggttgactgactcttcacactgttttcttcctgcagGATGTCTCTACTGTAGATGATACACTTCCACAGACTTTCCAAAGTTGGTTGCTATGCTTCTTTGGCATAGTCAGTACCACACTAGTGACAACCTGCATGGCTGCACCGATCTTACTCATCAAAGTTGTTCCACTAAGTATTCTCTGCGTCTCAGTGCAGgtaaatccttcatctcccactcatccagttagttcctgaaaactccccgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGCACT---CTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttgaaagttcaaaggttgactgactcttcacactgttttcttcctgcagGATGTCTCTACTGTAGATGATACACTTCCACAGACTTTCCAAAGTTGGTTGCTATGCTTCTTTGGCATAGTCAGTACCACACTAGTGACAACCTGCATGGCTGCACCGATCTTACTCATCAAAGTTGTTCCACTAAGTATTCTCTGCGTCTCAGTGCAGgtaaatccttcatctcccactcatccagttagttcctgaaaactccccgt #### Abcc2_ID8843_27 --> 0 - 0 Original Alignment ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tatcccgtctgtctagatagaagtactacctgctcacttgtcacctgcagATCACACAAACTCTGAACTGGCTAGTGAAAATGACATCAGAAGTAGAGACCAACATTGTGGCTGTTGAACGAATAAATGAATACATAAATGTAGATAATAAGgtgagtggatgtgaaggtcagtagtagcaaccacatggtgtttgaacaga Alignment from CESAR ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tatcccgtctgtctagatagaagtactacctgctcacttgtcacctgcagATCACACAAACTCTGAACTGGCTAGTGAAAATGACATCAGAAGTAGAGACCAACATTGTGGCTGTTGAACGAATAAATGAATACATAAATGTAGATAATAAGgtgagtggatgtgaaggtcagtagtagcaaccacatggtgtttgaacaga Alignment from Spaln_aa2Genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tatcccgtctgtctagatagaagtactacctgctcacttgtcacctgcagATCACACAAACTCTGAACTGGCTAGTGAAAATGACATCAGAAGTAGAGACCAACATTGTGGCTGTTGAACGAATAAATGAATACATAAATGTAGATAATAAGgtgagtggatgtgaaggtcagtagtagcaaccacatggtgtttgaacaga Alignment from Spaln_nt2Genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tatcccgtctgtctagatagaagtactacctgctcacttgtcacctgcagATCACACAAACTCTGAACTGGCTAGTGAAAATGACATCAGAAGTAGAGACCAACATTGTGGCTGTTGAACGAATAAATGAATACATAAATGTAGATAATAAGgtgagtggatgtgaaggtcagtagtagcaaccacatggtgtttgaacaga Alignment from Pairagon ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tatcccgtctgtctagatagaagtactacctgctcacttgtcacctgcagATCACACAAACTCTGAACTGGCTAGTGAAAATGACATCAGAAGTAGAGACCAACATTGTGGCTGTTGAACGAATAAATGAATACATAAATGTAGATAATAAGgtgagtggatgtgaaggtcagtagtagcaaccacatggtgtttgaacaga Alignment from Exonerate_protein2genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tatcccgtctgtctagatagaagtactacctgctcacttgtcacctgcagATCACACAAACTCTGAACTGGCTAGTGAAAATGACATCAGAAGTAGAGACCAACATTGTGGCTGTTGAACGAATAAATGAATACATAAATGTAGATAATAAGgtgagtggatgtgaaggtcagtagtagcaaccacatggtgtttgaacaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tatcccgtctgtctagatagaagtactacctgctcacttgtcacctgcagATCACACAAACTCTGAACTGGCTAGTGAAAATGACATCAGAAGTAGAGACCAACATTGTGGCTGTTGAACGAATAAATGAATACATAAATGTAGATAATAAGgtgagtggatgtgaaggtcagtagtagcaaccacatggtgtttgaacaga #### Abcc2_ID8844_28 --> 0 - 0 Original Alignment GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from CESAR GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from Spaln_aa2Genome GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from Spaln_nt2Genome GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from Pairagon GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from Exonerate_protein2genome GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCGCCGTGGGTGACCGACAAGAAGCCTCCGGCAGATTGGCCCAAAAAAGGTGAGATCCAGTTCAACAACTATCAAGTGCGGTATCGGCCGGAGCTGGATCTGGTCCTGAAAGGGATTACTTGTAACATCAAGAGCACCGAGAAG aatgcaagaaagaagaggtggtcactgtattttgctgttgttgttttcagGTTCCATGGGTAAATGATAAAGCTCCTCCAGGAGACTGGCCTGAAAAAGGTGAGATCCAGTTCAATAACTATCAAGTACAATACCGTCCCGAGCTAGATCTGGTCCTGAAGGGAATCACCTGTAACATCAAAAGCACTGAAAAGgtaagaaatacaaaccatgagagtaaactaaaaggtgccaaatgatgcga #### Abcc2_ID8846_30 --> 0 - 2 Original Alignment GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGag tctgtaatgcatgcaaggtgcaaatctagctcttgtggttgttgtttcagGATGACATCTTGTTCTCAGGGAATTTGAGGATGAATCTAGATCCTTTTAACAAGTATTCAGATGAGGAAATTTGGAGGGCACTGGAATTGGCACATCTCAAGTCGTCTGTAGCTAGTCTGCAGCTTGGGTTGCTACATGAAGTGTCTGAAGGTGGTGACAACCTCaggtaagatctctcttctgctctagttcaaagacaactgtttgaaaatctga Alignment from CESAR GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGag tctgtaatgcatgcaaggtgcaaatctagctcttgtggttgttgtttcagGATGACATCTTGTTCTCAGGGAATTTGAGGATGAATCTAGATCCTTTTAACAAGTATTCAGATGAGGAAATTTGGAGGGCACTGGAATTGGCACATCTCAAGTCGTCTGTAGCTAGTCTGCAGCTTGGGTTGCTACATGAAGTGTCTGAAGGTGGTGACAACCTCaggtaagatctctcttctgctctagttcaaagacaactgtttgaaaatctga Alignment from Spaln_aa2Genome GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAG tctgtaatgcatgcaaggtgcaaatctagctcttgtggttgttgtttcagGATGACATCTTGTTCTCAGGGAATTTGAGGATGAATCTAGATCCTTTTAACAAGTATTCAGATGAGGAAATTTGGAGGGCACTGGAATTGGCACATCTCAAGTCGTCTGTAGCTAGTCTGCAGCTTGGGTTGCTACATGAAGTGTCTGAAGGTGGTGACAACCTCAGgtaagatctctcttctgctctagttcaaagacaactgtttgaaaatctga Alignment from Spaln_nt2Genome GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAG tctgtaatgcatgcaaggtgcaaatctagctcttgtggttgttgtttcagGATGACATCTTGTTCTCAGGGAATTTGAGGATGAATCTAGATCCTTTTAACAAGTATTCAGATGAGGAAATTTGGAGGGCACTGGAATTGGCACATCTCAAGTCGTCTGTAGCTAGTCTGCAGCTTGGGTTGCTACATGAAGTGTCTGAAGGTGGTGACAACCTCAGgtaagatctctcttctgctctagttcaaagacaactgtttgaaaatctga Alignment from Pairagon GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAG tctgtaatgcatgcaaggtgcaaatctagctcttgtggttgttgtttcagGATGACATCTTGTTCTCAGGGAATTTGAGGATGAATCTAGATCCTTTTAACAAGTATTCAGATGAGGAAATTTGGAGGGCACTGGAATTGGCACATCTCAAGTCGTCTGTAGCTAGTCTGCAGCTTGGGTTGCTACATGAAGTGTCTGAAGGTGGTGACAACCTCAGgtaagatctctcttctgctctagttcaaagacaactgtttgaaaatctga Alignment from Exonerate_protein2genome GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAG tctgtaatgcatgcaaggtgcaaatctagctcttgtggttgttgtttcagGATGACATCTTGTTCTCAGGGAATTTGAGGATGAATCTAGATCCTTTTAACAAGTATTCAGATGAGGAAATTTGGAGGGCACTGGAATTGGCACATCTCAAGTCGTCTGTAGCTAGTCTGCAGCTTGGGTTGCTACATGAAGTGTCTGAAGGTGGTGACAACCTCAGgtaagatctctcttctgctctagttcaaagacaactgtttgaaaatctga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAG tctgtaatgcatgcaaggtgcaaatctagctcttgtggttgttgtttcagGATGACATCTTGTTCTCAGGGAATTTGAGGATGAATCTAGATCCTTTTAACAAGTATTCAGATGAGGAAATTTGGAGGGCACTGGAATTGGCACATCTCAAGTCGTCTGTAGCTAGTCTGCAGCTTGGGTTGCTACATGAAGTGTCTGAAGGTGGTGACAACCTCAGgtaagatctctcttctgctctagttcaaagacaactgtttgaaaatctga #### Acsl5_ID11597_2 --> 0 - 1 Original Alignment GGAGGAGCA------CGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTg tcaaagggtcaaattgcagtagaaagttggatcttttcccttgaacatagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTATGTTATTTCTCGGATTCA------CCATATGAAAATGTCCAGAGGGGCCTTGCTGTGTCTggtgagattgctcgcttcatctcttattgtgggccaccaaacatgagctag Alignment from CESAR GGAGGAGCA------CGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTg tcaaagggtcaaattgcagtagaaagttggatcttttcccttgaacatagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTATGTTATTTCTCGGAT------TCACCATATGAAAATGTCCAGAGGGGCCTTGCTGTGTCTggtgagattgctcgcttcatctcttattgtgggccaccaaacatgagctag Alignment from Spaln_aa2Genome GGAGGA------GCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tcaaagggtcaaattgcagtagaaagttggatcttttcccttgaacatagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTATGTTATTTCTCGGAT------TCACCATATGAAAATGTCCAGAGGGGCCTTGCTGTGTCTGgtgagattgctcgcttcatctcttattgtgggccaccaaacatgagctag Alignment from Spaln_nt2Genome GGAGGAGCAC------GGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tcaaagggtcaaattgcagtagaaagttggatcttttcccttgaacatagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTATGTTATTTCTCGGATTC----AC--CATATGAAAATGTCCAGAGGGGCCTTGCTGTGTCTGgtgagattgctcgcttcatctcttattgtgggccaccaaacatgagctag Alignment from Pairagon GGAGGAGCAC------GGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGA--CGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tcaaagggtcaaattgcagtagaaagttggatcttttcccttgaacatagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTATGTTATTTCTCGGATTCACCA--------TATGAAAATGTCCAGAGGGGCCTTGCTGTGTCTGgtgagattgctcgcttcatctcttattgtgggccaccaaacatgagctag Alignment from Exonerate_protein2genome GGAGGA------GCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tcaaagggtcaaattgcagtagaaagttggatcttttcccttgaacatagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTATGTTATTTCTCGGATTCACCA------TATGAAAATGTCCAGAGGGGCCTTGCTGTGTCTGgtgagattgctcgcttcatctcttattgtgggccaccaaacatgagctag Alignment from Exonerate_coding2genome tcaaagggtcaaattgcagtagaaagttggatcttttcccttgaacataggggggagcacctgctggaaggggggcagttaaggagaataatgacctaatcctatgttatttctcggattcaccatatgaaaatgtccagaggggccttgctgtgtctggtgagattgctcgcttcatctcttattgtgggccaccaaacatgagctag Alignment from GeneWise GGAGGAGCACGG------AGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tcaaagggtcaaattgcagtagaaagttggatcttttcccttgaacatagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTATGTTATTTCTCGGATTCACCA------TATGAAAATGTCCAGAGGGGCCTTGCTGTGTCTGgtgagattgctcgcttcatctcttattgtgggccaccaaacatgagctag #### Acsl5_ID11601_6 --> 2 - 0 Original Alignment ctGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG ccatcttctcatatcggactttagggtgcacattatgtcctttattgcagctGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACGATGGTAGTAGAAAATGTGGCACAAGGTCTGACACCAGGCCTAAAAACAGTCATCCTGATGGACCGTTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgagtaccaaaagtagcttcatgctggtgagttcatattggtatctgaa Alignment from CESAR ctGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG ccatcttctcatatcggactttagggtgcacattatgtcctttattgcagctGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACGATGGTAGTAGAAAATGTGGCACAAGGTCTGACACCAGGCCTAAAAACAGTCATCCTGATGGACCGTTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgagtaccaaaagtagcttcatgctggtgagttcatattggtatctgaa Alignment from Spaln_aa2Genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG ccatcttctcatatcggactttagggtgcacattatgtcctttattgcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACGATGGTAGTAGAAAATGTGGCACAAGGTCTGACACCAGGCCTAAAAACAGTCATCCTGATGGACCGTTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgagtaccaaaagtagcttcatgctggtgagttcatattggtatctgaa Alignment from Spaln_nt2Genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG ccatcttctcatatcggactttagggtgcacattatgtcctttattgcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACGATGGTAGTAGAAAATGTGGCACAAGGTCTGACACCAGGCCTAAAAACAGTCATCCTGATGGACCGTTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgagtaccaaaagtagcttcatgctggtgagttcatattggtatctgaa Alignment from Pairagon CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG ccatcttctcatatcggactttagggtgcacattatgtcctttattgcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACGATGGTAGTAGAAAATGTGGCACAAGGTCTGACACCAGGCCTAAAAACAGTCATCCTGATGGACCGTTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgagtaccaaaagtagcttcatgctggtgagttcatattggtatctgaa Alignment from Exonerate_protein2genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG ccatcttctcatatcggactttagggtgcacattatgtcctttattgcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACGATGGTAGTAGAAAATGTGGCACAAGGTCTGACACCAGGCCTAAAAACAGTCATCCTGATGGACCGTTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgagtaccaaaagtagcttcatgctggtgagttcatattggtatctgaa Alignment from Exonerate_coding2genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG ccatcttctcatatcggactttagggtgcacattatgtcctttattgcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACGATGGTAGTAGAAAATGTGGCACAAGGTCTGACACCAGGCCTAAAAACAGTCATCCTGATGGACCGTTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgagtaccaaaagtagcttcatgctggtgagttcatattggtatctgaa Alignment from GeneWise CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAGAATATAGGCAAAGAGAACTTCAAAAAACCAGTG ccatcttctcatatcggactttagggtgcacattatgtcctttattgcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACGATGGTAGTAGAAAATGTGGCACAAGGTCTGACACCAGGCCTAAAAACAGTCATCCTGATGGACCGTTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGGTGAGTACCAAAAGTAGCTTCATG------CTGgtgagttcatattggta #### Acsl5_ID11606_11 --> 0 - 0 Original Alignment GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG gcaagtctacttatttaagcctttgggcggcttctgtttttttcttccagGCTGTGTTTTTTTCATGTGGGGGAAAAATTGGGTTCTTCCGTGGTGATATCAGGTTACTTTCTGATGATATGAAGACTTCTGAACCTACAGCATACCCTGCATTGCCTTGGCTG---CACAGGGTCTATCAAAAGgtgagaaacttgtctccaccaacttcaaaggattaagagtgtggagaggt Alignment from CESAR GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG gcaagtctacttatttaagcctttgggcggcttctgtttttttcttccagGCTGTGTTTTTTTCATGTGGGGGAAAAATTGGGTTCTTCCGTGGTGATATCAGGTTACTTTCTGATGATATGAAGACTTCTGAACCTACAGCATACCCTGCATTGCCTTGG---CTGCACAGGGTCTATCAAAAGgtgagaaacttgtctccaccaacttcaaaggattaagagtgtggagaggt Alignment from Spaln_aa2Genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG gcaagtctacttatttaagcctttgggcggcttctgtttttttcttccagGCTGTGTTTTTTTCATGTGGGGGAAAAATTGGGTTCTTCCGTGGTGATATCAGGTTACTTTCTGATGATATGAAGACTTCTGAACCTACAGCATACCCTGCATTGCCTTGG---CTGCACAGGGTCTATCAAAAGgtgagaaacttgtctccaccaacttcaaaggattaagagtgtggagaggt Alignment from Spaln_nt2Genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG gcaagtctacttatttaagcctttgggcggcttctgtttttttcttccagGCTGTGTTTTTTTCATGTGGGGGAAAAATTGGGTTCTTCCGTGGTGATATCAGGTTACTTTCTGATGATATGAAGACTTCTGAACCTACAGCATACCCTGCATTGCCTTGGCTGC---ACAGGGTCTATCAAAAGgtgagaaacttgtctccaccaacttcaaaggattaagagtgtggagaggt Alignment from Pairagon GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG gcaagtctacttatttaagcctttgggcggcttctgtttttttcttccagGCTGTGTTTTTTTCATGTGGGGGAAAAATTGGGTTCTTCCGTGGTGATATCAGGTTACTTTCTGATGATATGAAGACTTCTGAACCTACAGCATACCCTGCATTGCCTTGGCTGC---ACAGGGTCTATCAAAAGgtgagaaacttgtctccaccaacttcaaaggattaagagtgtggagaggt Alignment from Exonerate_protein2genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG gcaagtctacttatttaagcctttgggcggcttctgtttttttcttccagGCTGTGTTTTTTTCATGTGGGGGAAAAATTGGGTTCTTCCGTGGTGATATCAGGTTACTTTCTGATGATATGAAGACTTCTGAACCTACAGCATACCCTGCATTGCCT---TGGCTGCACAGGGTCTATCAAAAGgtgagaaacttgtctccaccaacttcaaaggattaagagtgtggagaggt Alignment from Exonerate_coding2genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG gcaagtctacttatttaagcctttgggcggcttctgtttttttcttccagGCTGTGTTTTTTTCATGTGGGGGAAAAATTGGGTTCTTCCGTGGTGATATCAGGTTACTTTCTGATGATATGAAGACTTCTGAACCTACAGCATACCCTGCATTGCCT---TGGCTGCACAGGGTCTATCAAAAGgtgagaaacttgtctccaccaacttcaaaggattaagagtgtggagaggt Alignment from GeneWise GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG gcaagtctacttatttaagcctttgggcggcttctgtttttttcttccagGCTGTGTTTTTTTCATGTGGGGGAAAAATTGGGTTCTTCCGTGGTGATATCAGGTTACTTTCTGATGATATGAAGACTTCTGAACCTACAGCATACCCTGCATTGCCT---TGGCTGCACAGGGTCTATCAAAAGgtgagaaacttgtctccaccaacttcaaaggattaagagtgtggagaggt #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatggggttactcagcagttatcaagcctaaccttctgttttaggcCATGTTGGCACTCCAGTCGCTTCAAATTTTGTAAAGCTTGAAGATGTAGCAGAGATGAACTACTTTTCAGTGAACAATAAAGGTGAAgtacctgagatatactttatcaactcagggtggatggaagaactgtctaa Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatggggttactcagcagttatcaagcctaaccttctgttttaggcCATGTTGGCACTCCAGTCGCTTCAAATTTTGTAAAGCTTGAAGATGTAGCAGAGATGAACTACTTTTCAGTGAACAATAAAGGTGAAgtacctgagatatactttatcaactcagggtggatggaagaactgtctaa Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatggggttactcagcagttatcaagcctaaccttctgttttagGCCATGTTGGCACTCCAGTCGCTTCAAATTTTGTAAAGCTTGAAGATGTAGCAGAGATGAACTACTTTTCAGTGAACAATAAAGGTGAAgtacctgagatatactttatcaactcagggtggatggaagaactgtctaa Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatggggttactcagcagttatcaagcctaaccttctgttttagGCCATGTTGGCACTCCAGTCGCTTCAAATTTTGTAAAGCTTGAAGATGTAGCAGAGATGAACTACTTTTCAGTGAACAATAAAGGTGAAgtacctgagatatactttatcaactcagggtggatggaagaactgtctaa Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatggggttactcagcagttatcaagcctaaccttctgttttagGCCATGTTGGCACTCCAGTCGCTTCAAATTTTGTAAAGCTTGAAGATGTAGCAGAGATGAACTACTTTTCAGTGAACAATAAAGGTGAAgtacctgagatatactttatcaactcagggtggatggaagaactgtctaa Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatggggttactcagcagttatcaagcctaaccttctgttttagGCCATGTTGGCACTCCAGTCGCTTCAAATTTTGTAAAGCTTGAAGATGTAGCAGAGATGAACTACTTTTCAGTGAACAATAAAGGTGAAgtacctgagatatactttatcaactcagggtggatggaagaactgtctaa Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatggggttactcagcagttatcaagcctaaccttctgttttagGCCATGTTGGCACTCCAGTCGCTTCAAATTTTGTAAAGCTTGAAGATGTAGCAGAGATGAACTACTTTTCAGTGAACAATAAAGGTGAAgtacctgagatatactttatcaactcagggtggatggaagaactgtctaa Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatggggttactcagcagttatcaagcctaaccttctgttttagGCCATGTTGGCACTCCAGTCGCTTCAAATTTTGTAAAGCTTGAAGATGTAGCAGAGATGAACTACTTTTCAGTGAACAATAAAGGTGAAgtacctgagatatactttatcaactcagggtggatggaagaactgtctaa #### Acta2_ID6907_7 --> 2 - 0 Original Alignment ggATGGAGTCAGCGGGCATCCACGAAACC---ACCTATAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGATCTCTATGCTAACAACGTCCTGTCAGGGGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTCGCACCCAGCACCATGAAGATCAAG ttgggttattcaaagcatagggagaaggaaactatatcatttgtttctagggACGAAGACAGCAGGTATCCATGAGACCGCCTCTTATAACAGTATTATGAAGTGTGATATTGGCATTAAGAAAGATCTCTACGCCAACAATATCTTATCTGGGGGCACCACCATGTACCCAGGCATTGCTGACAAAATGCAGAAGGAGATCACAGCCCTCACACCCAGCACTATGAAGATCAAGgtgacctaattaagtctgctccttagaaagtgagaggagatatagcacac Alignment from CESAR ggATGGAGTCAGCGGGCATCCACGAAACCACC---TATAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGATCTCTATGCTAACAACGTCCTGTCAGGGGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTCGCACCCAGCACCATGAAGATCAAG ttgggttattcaaagcatagggagaaggaaactatatcatttgtttctagggACGAAGACAGCAGGTATCCATGAGACCGCCTCTTATAACAGTATTATGAAGTGTGATATTGGCATTAAGAAAGATCTCTACGCCAACAATATCTTATCTGGGGGCACCACCATGTACCCAGGCATTGCTGACAAAATGCAGAAGGAGATCACAGCCCTCACACCCAGCACTATGAAGATCAAGgtgacctaattaagtctgctccttagaaagtgagaggagatatagcacac Alignment from Spaln_aa2Genome GGATGGAGTCAGCGGGCATCCACGAAACCACC---TATAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGATCTCTATGCTAACAACGTCCTGTCAGGGGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTCGCACCCAGCACCATGAAGATCAAG ttgggttattcaaagcatagggagaaggaaactatatcatttgtttctagGGACGAAGACAGCAGGTATCCATGAGACCGCCTCTTATAACAGTATTATGAAGTGTGATATTGGCATTAAGAAAGATCTCTACGCCAACAATATCTTATCTGGGGGCACCACCATGTACCCAGGCATTGCTGACAAAATGCAGAAGGAGATCACAGCCCTCACACCCAGCACTATGAAGATCAAGgtgacctaattaagtctgctccttagaaagtgagaggagatatagcacac Alignment from Spaln_nt2Genome GGATGGAGTCAGCGGGCATCCACGAAACCACCT---ATAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGATCTCTATGCTAACAACGTCCTGTCAGGGGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTCGCACCCAGCACCATGAAGATCAAG ttgggttattcaaagcatagggagaaggaaactatatcatttgtttctagGGACGAAGACAGCAGGTATCCATGAGACCGCCTCTTATAACAGTATTATGAAGTGTGATATTGGCATTAAGAAAGATCTCTACGCCAACAATATCTTATCTGGGGGCACCACCATGTACCCAGGCATTGCTGACAAAATGCAGAAGGAGATCACAGCCCTCACACCCAGCACTATGAAGATCAAGgtgacctaattaagtctgctccttagaaagtgagaggagatatagcacac Alignment from Pairagon GGATGGAGTCAGCGGGCATCCACGAAACCACC---TATAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGATCTCTATGCTAACAACGTCCTGTCAGGGGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTCGCACCCAGCACCATGAAGATCAAG ttgggttattcaaagcatagggagaaggaaactatatcatttgtttctagGGACGAAGACAGCAGGTATCCATGAGACCGCCTCTTATAACAGTATTATGAAGTGTGATATTGGCATTAAGAAAGATCTCTACGCCAACAATATCTTATCTGGGGGCACCACCATGTACCCAGGCATTGCTGACAAAATGCAGAAGGAGATCACAGCCCTCACACCCAGCACTATGAAGATCAAGgtgacctaattaagtctgctccttagaaagtgagaggagatatagcacac Alignment from Exonerate_protein2genome GGATGGAGTCAGCGGGCATCCACGAAACC---ACCTATAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGATCTCTATGCTAACAACGTCCTGTCAGGGGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTCGCACCCAGCACCATGAAGATCAAG ttgggttattcaaagcatagggagaaggaaactatatcatttgtttctagGGACGAAGACAGCAGGTATCCATGAGACCGCCTCTTATAACAGTATTATGAAGTGTGATATTGGCATTAAGAAAGATCTCTACGCCAACAATATCTTATCTGGGGGCACCACCATGTACCCAGGCATTGCTGACAAAATGCAGAAGGAGATCACAGCCCTCACACCCAGCACTATGAAGATCAAGgtgacctaattaagtctgctccttagaaagtgagaggagatatagcacac Alignment from Exonerate_coding2genome GGATGGAGTCAGCGGGCATCCACGAAACC---ACCTATAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGATCTCTATGCTAACAACGTCCTGTCAGGGGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTCGCACCCAGCACCATGAAGATCAAG ttgggttattcaaagcatagggagaaggaaactatatcatttgtttctagGGACGAAGACAGCAGGTATCCATGAGACCGCCTCTTATAACAGTATTATGAAGTGTGATATTGGCATTAAGAAAGATCTCTACGCCAACAATATCTTATCTGGGGGCACCACCATGTACCCAGGCATTGCTGACAAAATGCAGAAGGAGATCACAGCCCTCACACCCAGCACTATGAAGATCAAGgtgacctaattaagtctgctccttagaaagtgagaggagatatagcacac Alignment from GeneWise GGATGGAGTCAGCGGGCATCCACGAAACC---ACCTATAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGATCTCTATGCTAACAACGTCCTGTCAGGGGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTCGCACCCAGCACCATGAAGATCAAG ttgggttattcaaagcatagggagaaggaaactatatcatttgtttctagGGACGAAGACAGCAGGTATCCATGAGACCGCCTCTTATAACAGTATTATGAAGTGTGATATTGGCATTAAGAAAGATCTCTACGCCAACAATATCTTATCTGGGGGCACCACCATGTACCCAGGCATTGCTGACAAAATGCAGAAGGAGATCACAGCCCTCACACCCAGCACTATGAAGATCAAGgtgacctaattaagtctgctccttagaaagtgagaggagatatagcacac #### Acta2_ID6910_4 --> 0 - 1 Original Alignment ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTg tgtagggagaattatgaataaatcccctcacctgttcttatgatattcagATCATGTTTGAGACCTTTAATGTCCCTGCAATGTATGTGACTATTCAAGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTggtaaggctcagcgtggaaacaaaggtgtctctatcatgaactttgttcaa Alignment from CESAR ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTg tgtagggagaattatgaataaatcccctcacctgttcttatgatattcagATCATGTTTGAGACCTTTAATGTCCCTGCAATGTATGTGACTATTCAAGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTggtaaggctcagcgtggaaacaaaggtgtctctatcatgaactttgttcaa Alignment from Spaln_aa2Genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tgtagggagaattatgaataaatcccctcacctgttcttatgatattcagATCATGTTTGAGACCTTTAATGTCCCTGCAATGTATGTGACTATTCAAGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaaggctcagcgtggaaacaaaggtgtctctatcatgaactttgttcaa Alignment from Spaln_nt2Genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tgtagggagaattatgaataaatcccctcacctgttcttatgatattcagATCATGTTTGAGACCTTTAATGTCCCTGCAATGTATGTGACTATTCAAGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaaggctcagcgtggaaacaaaggtgtctctatcatgaactttgttcaa Alignment from Pairagon ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tgtagggagaattatgaataaatcccctcacctgttcttatgatattcagATCATGTTTGAGACCTTTAATGTCCCTGCAATGTATGTGACTATTCAAGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaaggctcagcgtggaaacaaaggtgtctctatcatgaactttgttcaa Alignment from Exonerate_protein2genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tgtagggagaattatgaataaatcccctcacctgttcttatgatattcagATCATGTTTGAGACCTTTAATGTCCCTGCAATGTATGTGACTATTCAAGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaaggctcagcgtggaaacaaaggtgtctctatcatgaactttgttcaa Alignment from Exonerate_coding2genome TGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG AGGGAGAATTATGAATAAATCCCCTCACCTGTTCTTATGATATT---CAGATCATGTTTGAGACCTTTAATGTCCCTGCAATGTATGTGACTATTCAAGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaaggctcagcgtggaaacaaaggtgtctctatcatgaactttgttcaa Alignment from GeneWise ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tgtagggagaattatgaataaatcccctcacctgttcttatgatattcagATCATGTTTGAGACCTTTAATGTCCCTGCAATGTATGTGACTATTCAAGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaaggctcagcgtggaaacaaaggtgtctctatcatgaactttgttcaa #### Acta2_ID6911_3 --> 0 - 0 Original Alignment ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG ttgagagctccagcttgctttgctgtgaaagtgtatgtccctctgttcagATTTGGCACCACTCCTTTTATAATAAACTGCATGTTGCCCCTAGGGAGCATCCAATGCTCCTGAATGATGCACCACTAAATCCCAAGCCCAACCGTGAAAGAATGATGCTGgtaagtatcattattttatcggaccaaaatcttgcaagcagcaagaagcc Alignment from CESAR ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG ttgagagctccagcttgctttgctgtgaaagtgtatgtccctctgttcagATTTGGCACCACTCCTTTTATAATAAACTGCATGTTGCCCCTAGGGAGCATCCAATGCTCCTGAATGATGCACCACTAAATCCCAAGCCCAACCGTGAAAGAATGATGCTGgtaagtatcattattttatcggaccaaaatcttgcaagcagcaagaagcc Alignment from Spaln_aa2Genome ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG ttgagagctccagcttgctttgctgtgaaagtgtatgtccctctgttcagATTTGGCACCACTCCTTTTATAATAAACTGCATGTTGCCCCTAGGGAGCATCCAATGCTCCTGAATGATGCACCACTAAATCCCAAGCCCAACCGTGAAAGAATGATGCTGgtaagtatcattattttatcggaccaaaatcttgcaagcagcaagaagcc Alignment from Spaln_nt2Genome ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG ttgagagctccagcttgctttgctgtgaaagtgtatgtccctctgttcagATTTGGCACCACTCCTTTTATAATAAACTGCATGTTGCCCCTAGGGAGCATCCAATGCTCCTGAATGATGCACCACTAAATCCCAAGCCCAACCGTGAAAGAATGATGCTGgtaagtatcattattttatcggaccaaaatcttgcaagcagcaagaagcc Alignment from Pairagon ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG ttgagagctccagcttgctttgctgtgaaagtgtatgtccctctgttcagATTTGGCACCACTCCTTTTATAATAAACTGCATGTTGCCCCTAGGGAGCATCCAATGCTCCTGAATGATGCACCACTAAATCCCAAGCCCAACCGTGAAAGAATGATGCTGgtaagtatcattattttatcggaccaaaatcttgcaagcagcaagaagcc Alignment from Exonerate_protein2genome ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG ttgagagctccagcttgctttgctgtgaaagtgtatgtccctctgttcagATTTGGCACCACTCCTTTTATAATAAACTGCATGTTGCCCCTAGGGAGCATCCAATGCTCCTGAATGATGCACCACTAAATCCCAAGCCCAACCGTGAAAGAATGATGCTGgtaagtatcattattttatcggaccaaaatcttgcaagcagcaagaagcc Alignment from Exonerate_coding2genome ttgagagctccagcttgctttgctgtgaaagtgtatgtccctctgttcagatttggcaccactccttttataataaactgcatgttgcccctagggagcatccaatgctcctgaatgatgcaccactaaatcccaagcccaaccgtgaaagaatgatgctggtaagtatcattattttatcggaccaaaatcttgcaagcagcaagaagcc Alignment from GeneWise ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG ttgagagctccagcttgctttgctgtgaaagtgtatgtccctctgttcagATTTGGCACCACTCCTTTTATAATAAACTGCATGTTGCCCCTAGGGAGCATCCAATGCTCCTGAATGATGCACCACTAAATCCCAAGCCCAACCGTGAAAGAATGATGCTGgtaagtatcattattttatcggaccaaaatcttgcaagcagcaagaagcc #### Actn3_ID699_11 --> 0 - 1 Original Alignment GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGg cgatgtgacttagctatttattttggaatttatgtctctcctgtcattagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAAATCAGGTGTCTGCAGAGGCTTCAGCTCTTTGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAggtatgctaaatacattagcaagggaacataactaggatagatcataaaaa Alignment from CESAR GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGg cgatgtgacttagctatttattttggaatttatgtctctcctgtcattagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAAATCAGGTGTCTGCAGAGGCTTCAGCTCTTTGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAggtatgctaaatacattagcaagggaacataactaggatagatcataaaaa Alignment from Spaln_aa2Genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG cgatgtgacttagctatttattttggaatttatgtctctcctgtcattagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAAATCAGGTGTCTGCAGAGGCTTCAGCTCTTTGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtatgctaaatacattagcaagggaacataactaggatagatcataaaaa Alignment from Spaln_nt2Genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG cgatgtgacttagctatttattttggaatttatgtctctcctgtcattagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAAATCAGGTGTCTGCAGAGGCTTCAGCTCTTTGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtatgctaaatacattagcaagggaacataactaggatagatcataaaaa Alignment from Pairagon GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG cgatgtgacttagctatttattttggaatttatgtctctcctgtcattagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAAATCAGGTGTCTGCAGAGGCTTCAGCTCTTTGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtatgctaaatacattagcaagggaacataactaggatagatcataaaaa Alignment from Exonerate_protein2genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG cgatgtgacttagctatttattttggaatttatgtctctcctgtcattagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAAATCAGGTGTCTGCAGAGGCTTCAGCTCTTTGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtatgctaaatacattagcaagggaacataactaggatagatcataaaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG cgatgtgacttagctatttattttggaatttatgtctctcctgtcattagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAAATCAGGTGTCTGCAGAGGCTTCAGCTCTTTGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtatgctaaatacattagcaagggaacataactaggatagatcataaaaa #### Actn3_ID702_8 --> 2 - 0 Original Alignment atATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tggaggtcaactatgctaggacactggccctttcccttgccttctcccagatATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaagcgagctgttgtaaacatcacatcatacagtatgtcctggcagttg Alignment from CESAR atATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tggaggtcaactatgctaggacactggccctttcccttgccttctcccagatATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaagcgagctgttgtaaacatcacatcatacagtatgtcctggcagttg Alignment from Spaln_aa2Genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tggaggtcaactatgctaggacactggccctttcccttgccttctcccagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaagcgagctgttgtaaacatcacatcatacagtatgtcctggcagttg Alignment from Spaln_nt2Genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tggaggtcaactatgctaggacactggccctttcccttgccttctcccagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaagcgagctgttgtaaacatcacatcatacagtatgtcctggcagttg Alignment from Pairagon ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tggaggtcaactatgctaggacactggccctttcccttgccttctcccagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaagcgagctgttgtaaacatcacatcatacagtatgtcctggcagttg Alignment from Exonerate_protein2genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tggaggtcaactatgctaggacactggccctttcccttgccttctcccagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaagcgagctgttgtaaacatcacatcatacagtatgtcctggcagttg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG tggaggtcaactatgctaggacactggccctttcccttgccttctcccagATATTGGCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTACCTTTCCTGTTTTTACGATGCATTTGCTGGGGCTGAGCAGgtaagcgagctgttgtaaacatcacatcatacagtatgtcctggcagttg #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg cccttagcatgtgccatgggctttgttactgttttttgtcatttttgcaggtGCTAGGCTGCCCAGGCCGGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAATGTAAATAACACACTAGACTTCATAGCTACTAAAGGAGTGAAGCTAGTCTCAATTAGTGCTGAAggtaagcgagggtaattgaagaataatagtagttagatgtttctgctaggc Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg cccttagcatgtgccatgggctttgttactgttttttgtcatttttgcaggtGCTAGGCTGCCCAGGCCGGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAATGTAAATAACACACTAGACTTCATAGCTACTAAAGGAGTGAAGCTAGTCTCAATTAGTGCTGAAggtaagcgagggtaattgaagaataatagtagttagatgtttctgctaggc Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG cccttagcatgtgccatgggctttgttactgttttttgtcatttttgcagGTGCTAGGCTGCCCAGGCCGGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAATGTAAATAACACACTAGACTTCATAGCTACTAAAGGAGTGAAGCTAGTCTCAATTAGTGCTGAAGgtaagcgagggtaattgaagaataatagtagttagatgtttctgctaggc Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG cccttagcatgtgccatgggctttgttactgttttttgtcatttttgcagGTGCTAGGCTGCCCAGGCCGGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAATGTAAATAACACACTAGACTTCATAGCTACTAAAGGAGTGAAGCTAGTCTCAATTAGTGCTGAAGgtaagcgagggtaattgaagaataatagtagttagatgtttctgctaggc Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG cccttagcatgtgccatgggctttgttactgttttttgtcatttttgcagGTGCTAGGCTGCCCAGGCCGGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAATGTAAATAACACACTAGACTTCATAGCTACTAAAGGAGTGAAGCTAGTCTCAATTAGTGCTGAAGgtaagcgagggtaattgaagaataatagtagttagatgtttctgctaggc Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG cccttagcatgtgccatgggctttgttactgttttttgtcatttttgcagGTGCTAGGCTGCCCAGGCCGGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAATGTAAATAACACACTAGACTTCATAGCTACTAAAGGAGTGAAGCTAGTCTCAATTAGTGCTGAAGgtaagcgagggtaattgaagaataatagtagttagatgtttctgctaggc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise -----AGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG cccttagcatgtgccatgggctttgttactgttttttgtcatttttgcagGTGCTAGGCTGCCCAGGCCGGATAAAGGCAAGATGTGCTTTCATAAAATTGCCAATGTAAATAACACACTAGACTTCATAGCTACTAAAGGAGTGAAGCTAGTCTCAATTAGTGCTGAAGgtaagcgagggtaattgaagaataatagtagttagatgtttctgctaggc #### Actn3_ID708_2 --> 0 - 1 Original Alignment ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCg gaatacaatgattcaaatggttagccctggcatgtgtgttctctccacagACATTCACTGCTTGGTGCAACTCACATCTGAGGAAGGCTGGGACACAAATTGAGAATATTGAAAAAGACTTCCGCACTGGCTTGAAGCTCATGCTGCTCCTTGAGGTTGTTTCTggtgagtgtagttgtagaacataacatagactacaagacttaaattaggaa Alignment from CESAR ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCg gaatacaatgattcaaatggttagccctggcatgtgtgttctctccacagACATTCACTGCTTGGTGCAACTCACATCTGAGGAAGGCTGGGACACAAATTGAGAATATTGAAAAAGACTTCCGCACTGGCTTGAAGCTCATGCTGCTCCTTGAGGTTGTTTCTggtgagtgtagttgtagaacataacatagactacaagacttaaattaggaa Alignment from Spaln_aa2Genome ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCG gaatacaatgattcaaatggttagccctggcatgtgtgttctctccacagACATTCACTGCTTGGTGCAACTCACATCTGAGGAAGGCTGGGACACAAATTGAGAATATTGAAAAAGACTTCCGCACTGGCTTGAAGCTCATGCTGCTCCTTGAGGTTGTTTCTGgtgagtgtagttgtagaacataacatagactacaagacttaaattaggaa Alignment from Spaln_nt2Genome ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCG gaatacaatgattcaaatggttagccctggcatgtgtgttctctccacagACATTCACTGCTTGGTGCAACTCACATCTGAGGAAGGCTGGGACACAAATTGAGAATATTGAAAAAGACTTCCGCACTGGCTTGAAGCTCATGCTGCTCCTTGAGGTTGTTTCTGgtgagtgtagttgtagaacataacatagactacaagacttaaattaggaa Alignment from Pairagon ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCG gaatacaatgattcaaatggttagccctggcatgtgtgttctctccacagACATTCACTGCTTGGTGCAACTCACATCTGAGGAAGGCTGGGACACAAATTGAGAATATTGAAAAAGACTTCCGCACTGGCTTGAAGCTCATGCTGCTCCTTGAGGTTGTTTCTGgtgagtgtagttgtagaacataacatagactacaagacttaaattaggaa Alignment from Exonerate_protein2genome ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCG gaatacaatgattcaaatggttagccctggcatgtgtgttctctccacagACATTCACTGCTTGGTGCAACTCACATCTGAGGAAGGCTGGGACACAAATTGAGAATATTGAAAAAGACTTCCGCACTGGCTTGAAGCTCATGCTGCTCCTTGAGGTTGTTTCTGgtgagtgtagttgtagaacataacatagactacaagacttaaattaggaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise -----------------------------TTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCGGAGAG- gaatacaatgattcaaatggttagCCCTGGCATGTGTGTTCTCTCCACAGACATTCACTGCTTGGTGCAACTCACATCTGAGGAAGGCTGGGACACAAATTGAGAATATTGAAAAAGACTTCCGCACTGGCTTGAAGCTCATGCTGCTCCTTGAGGTTGTTTCTGGTGAGTgtagttgtagaacataacatagactacaagacttaaattaggaa #### Actr1a_ID9874_6 --> 1 - 0 Original Alignment tTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA cacgtgatctcaaggaactctctaagagcatatcacttcccttcacacagtTATGCCACCAGCAAGACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACTCATGTAGTTCCAATTTATGAAGGCTTCACCATTCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACACCTCCTGCGTCTCTATCTACGGCAGGAGGGATATGATTTTCATGCCTCCTCTGAGTTTGAGATTGTTAAAGCTATAAAAGAAgtaactgttgtaaacacccagcttcatcatgaggtcttaagaataaaaaa Alignment from CESAR tTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA cacgtgatctcaaggaactctctaagagcatatcacttcccttcacacagtTATGCCACCAGCAAGACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACTCATGTAGTTCCAATTTATGAAGGCTTCACCATTCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACACCTCCTGCGTCTCTATCTACGGCAGGAGGGATATGATTTTCATGCCTCCTCTGAGTTTGAGATTGTTAAAGCTATAAAAGAAgtaactgttgtaaacacccagcttcatcatgaggtcttaagaataaaaaa Alignment from Spaln_aa2Genome TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA cacgtgatctcaaggaactctctaagagcatatcacttcccttcacacagTTATGCCACCAGCAAGACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACTCATGTAGTTCCAATTTATGAAGGCTTCACCATTCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACACCTCCTGCGTCTCTATCTACGGCAGGAGGGATATGATTTTCATGCCTCCTCTGAGTTTGAGATTGTTAAAGCTATAAAAGAAgtaactgttgtaaacacccagcttcatcatgaggtcttaagaataaaaaa Alignment from Spaln_nt2Genome TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA cacgtgatctcaaggaactctctaagagcatatcacttcccttcacacagTTATGCCACCAGCAAGACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACTCATGTAGTTCCAATTTATGAAGGCTTCACCATTCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACACCTCCTGCGTCTCTATCTACGGCAGGAGGGATATGATTTTCATGCCTCCTCTGAGTTTGAGATTGTTAAAGCTATAAAAGAAgtaactgttgtaaacacccagcttcatcatgaggtcttaagaataaaaaa Alignment from Pairagon TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA cacgtgatctcaaggaactctctaagagcatatcacttcccttcacacagTTATGCCACCAGCAAGACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACTCATGTAGTTCCAATTTATGAAGGCTTCACCATTCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACACCTCCTGCGTCTCTATCTACGGCAGGAGGGATATGATTTTCATGCCTCCTCTGAGTTTGAGATTGTTAAAGCTATAAAAGAAgtaactgttgtaaacacccagcttcatcatgaggtcttaagaataaaaaa Alignment from Exonerate_protein2genome TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA cacgtgatctcaaggaactctctaagagcatatcacttcccttcacacagTTATGCCACCAGCAAGACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACTCATGTAGTTCCAATTTATGAAGGCTTCACCATTCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACACCTCCTGCGTCTCTATCTACGGCAGGAGGGATATGATTTTCATGCCTCCTCTGAGTTTGAGATTGTTAAAGCTATAAAAGAAgtaactgttgtaaacacccagcttcatcatgaggtcttaagaataaaaaa Alignment from Exonerate_coding2genome TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA cacgtgatctcaaggaactctctaagagcatatcacttcccttcacacagTTATGCCACCAGCAAGACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACTCATGTAGTTCCAATTTATGAAGGCTTCACCATTCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACACCTCCTGCGTCTCTATCTACGGCAGGAGGGATATGATTTTCATGCCTCCTCTGAGTTTGAGATTGTTAAAGCTATAAAAGAAgtaactgttgtaaacacccagcttcatcatgaggtcttaagaataaaaaa Alignment from GeneWise TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA cacgtgatctcaaggaactctctaagagcatatcacttcccttcacacagTTATGCCACCAGCAAGACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACTCATGTAGTTCCAATTTATGAAGGCTTCACCATTCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACACCTCCTGCGTCTCTATCTACGGCAGGAGGGATATGATTTTCATGCCTCCTCTGAGTTTGAGATTGTTAAAGCTATAAAAGAAgtaactgttgtaaacacccagcttcatcatgaggtcttaagaataaaaaa #### Acy3_ID249_3 --> 0 - 1 Original Alignment CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCt accgtccctaaaaaagtaagcccccagccaccttcttcttttccttgcagCGACAAAACCCCGGTATGCCCTACGGGCTCTTTTTACATGTGCCTGCTGGGATGGAAACCTTTAGTGTAGATTCTACATCCAAGATTGGAATCtgtgagctacaaacagatcagaaggccacagaaccccttggggctgtgggc Alignment from CESAR CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCt accgtccctaaaaaagtaagcccccagccaccttcttcttttccttgcagCGACAAAACCCCGGTATGCCCTACGGGCTCTTTTTACATGTGCCTGCTGGGATGGAAACCTTTAGTGTAGATTCTACATCCAAGATTGGAATCtgtgagctacaaacagatcagaaggccacagaaccccttggggctgtgggc Alignment from Spaln_aa2Genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT accgtccctaaaaaagtaagcccccagccaccttcttcttttccttgcagCGACAAAACCCCGGTATGCCCTACGGGCTCTTTTTACATGTGCCTGCTGGGATGGAAACCTTTAGTGTAGATTCTACATCCAAGATTGGAATCTgtgagctacaaacagatcagaaggccacagaaccccttggggctgtgggc Alignment from Spaln_nt2Genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT accgtccctaaaaaagtaagcccccagccaccttcttcttttccttgcagCGACAAAACCCCGGTATGCCCTACGGGCTCTTTTTACATGTGCCTGCTGGGATGGAAACCTTTAGTGTAGATTCTACATCCAAGATTGGAATCTgtgagctacaaacagatcagaaggccacagaaccccttggggctgtgggc Alignment from Pairagon CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT accgtccctaaaaaagtaagcccccagccaccttcttcttttccttgcagCGACAAAACCCCGGTATGCCCTACGGGCTCTTTTTACATGTGCCTGCTGGGATGGAAACCTTTAGTGTAGATTCTACATCCAAGATTGGAATCTgtgagctacaaacagatcagaaggccacagaaccccttggggctgtgggc Alignment from Exonerate_protein2genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT accgtccctaaaaaagtaagcccccagccaccttcttcttttccttgcagCGACAAAACCCCGGTATGCCCTACGGGCTCTTTTTACATGTGCCTGCTGGGATGGAAACCTTTAGTGTAGATTCTACATCCAAGATTGGAATCTgtgagctacaaacagatcagaaggccacagaaccccttggggctgtgggc Alignment from Exonerate_coding2genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT accgtccctaaaaaagtaagcccccagccaccttcttcttttccttgcagCGACAAAACCCCGGTATGCCCTACGGGCTCTTTTTACATGTGCCTGCTGGGATGGAAACCTTTAGTGTAGATTCTACATCCAAGATTGGAATCTgtgagctacaaacagatcagaaggccacagaaccccttggggctgtgggc Alignment from GeneWise CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT accgtccctaaaaaagtaagcccccagccaccttcttcttttccttgcagCGACAAAACCCCGGTATGCCCTACGGGCTCTTTTTACATGTGCCTGCTGGGATGGAAACCTTTAGTGTAGATTCTACATCCAAGATTGGAATCTgtgagctacaaacagatcagaaggccacagaaccccttggggctgtgggc #### Add3_ID11212_4 --> 0 - 0 Original Alignment GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG accccatccaaagcaggccatggttcatttgtgcccatgttttcccacagGTCCGAATCAGTAAGGAACAAGACCACATTATAATGACTCCT---GGACTGTCTTTTTCTGAAACAACTGCATCCTCTTCAgtatgtgtgtcaatcccatctaactaatctttaatactcccaaaaggcag Alignment from CESAR GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG accccatccaaagcaggccatggttcatttgtgcccatgttttcccacagGTCCGAATCAGTAAGGAACAAGACCACATTATAATGACTCCT---GGACTGTCTTTTTCTGAAACAACTGCATCCTCTTCAgtatgtgtgtcaatcccatctaactaatctttaatactcccaaaaggcag Alignment from Spaln_aa2Genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG accccatccaaagcaggccatggttcatttgtgcccatgttttcccacagGTCCGAATCAGTAAGGAACAAGACCACATTATAATGACTCCT---GGACTGTCTTTTTCTGAAACAACTGCATCCTCTTCAgtatgtgtgtcaatcccatctaactaatctttaatactcccaaaaggcag Alignment from Spaln_nt2Genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG accccatccaaagcaggccatggttcatttgtgcccatgttttcccacagGTCCGAATCAGTAAGGAACAAGACCACATTATAATGACTCC---TGGACTGTCTTTTTCTGAAACAACTGCATCCTCTTCAgtatgtgtgtcaatcccatctaactaatctttaatactcccaaaaggcag Alignment from Pairagon GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG accccatccaaagcaggccatggttcatttgtgcccatgttttcccacagGTCCGAATCAGTAAGGAACAAGACCACATTATAATGACTCCTGGA---CTGTCTTTTTCTGAAACAACTGCATCCTCTTCAgtatgtgtgtcaatcccatctaactaatctttaatactcccaaaaggcag Alignment from Exonerate_protein2genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG accccatccaaagcaggccatggttcatttgtgcccatgttttcccacagGTCCGAATCAGTAAGGAACAAGACCACATTATAATGACTCCT---GGACTGTCTTTTTCTGAAACAACTGCATCCTCTTCAgtatgtgtgtcaatcccatctaactaatctttaatactcccaaaaggcag Alignment from Exonerate_coding2genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG accccatccaaagcaggccatggttcatttgtgcccatgttttcccacagGTCCGAATCAGTAAGGAACAAGACCACATTATAATGACTCCT---GGACTGTCTTTTTCTGAAACAACTGCATCCTCTTCAgtatgtgtgtcaatcccatctaactaatctttaatactcccaaaaggcag Alignment from GeneWise GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG accccatccaaagcaggccatggttcatttgtgcccatgttttcccacagGTCCGAATCAGTAAGGAACAAGACCACATTATAATGACTCCT---GGACTGTCTTTTTCTGAAACAACTGCATCCTCTTCAgtatgtgtgtcaatcccatctaactaatctttaatactcccaaaaggcag #### Add3_ID11218_10 --> 0 - 0 Original Alignment TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG actatgcagaggtgcagtttatcataaaaatatttatctgtttttgacagTGGATGAAAGCGGAAGACCCCTCTAAGGTCAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtaaatcattgcactcacattgtaaggtgcctttttgtgtaattagtaga Alignment from CESAR TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG actatgcagaggtgcagtttatcataaaaatatttatctgtttttgacagTGGATGAAAGCGGAAGACCCCTCTAAGGTCAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtaaatcattgcactcacattgtaaggtgcctttttgtgtaattagtaga Alignment from Spaln_aa2Genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG actatgcagaggtgcagtttatcataaaaatatttatctgtttttgacagTGGATGAAAGCGGAAGACCCCTCTAAGGTCAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtaaatcattgcactcacattgtaaggtgcctttttgtgtaattagtaga Alignment from Spaln_nt2Genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG actatgcagaggtgcagtttatcataaaaatatttatctgtttttgacagTGGATGAAAGCGGAAGACCCCTCTAAGGTCAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtaaatcattgcactcacattgtaaggtgcctttttgtgtaattagtaga Alignment from Pairagon TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG actatgcagaggtgcagtttatcataaaaatatttatctgtttttgacagTGGATGAAAGCGGAAGACCCCTCTAAGGTCAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtaaatcattgcactcacattgtaaggtgcctttttgtgtaattagtaga Alignment from Exonerate_protein2genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG actatgcagaggtgcagtttatcataaaaatatttatctgtttttgacagTGGATGAAAGCGGAAGACCCCTCTAAGGTCAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtaaatcattgcactcacattgtaaggtgcctttttgtgtaattagtaga Alignment from Exonerate_coding2genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG actatgcagaggtgcagtttatcataaaaatatttatctgtttttgacagTGGATGAAAGCGGAAGACCCCTCTAAGGTCAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtaaatcattgcactcacattgtaaggtgcctttttgtgtaattagtaga Alignment from GeneWise TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG actatgcagaggtgcagtttatcataaaaatatttatctgtttttgacagTGGATGAAAGCGGAAGACCCCTCTAAGGTCAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtaaatcattgcactcacattgtaaggtgcctttttgtgtaattagtaga #### Add3_ID11220_12 --> 0 - 1 Original Alignment ACCATGCAGTTTGACGATGACGATCAGGGC------------------------CCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAGAGA---------AAGCAGCAAGGCCTGGACg cagatcaggcatctaatggtgagtaaggaccctgtattcttttttcatagATGATGCAGTATGATGAGGATGACCAGGGTCCACCCACACCAAATCCCTTTAGTCCACCCACA---CCAAATCCCTTTAGCCACCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGCCTGGATggtgagtactagtgctaggccaaacttaatggagtgcaggccccgtccacc Alignment from CESAR ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCT---------------------CCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAGAGA---------AAGCAGCAAGGCCTGGACg cagatcaggcatctaatggtgagtaaggaccctgtattcttttttcatagATGATGCAGTATGATGAGGATGACCAGGGTCCACCCACACCAAATCCCTTTAGTCCACCCACACCAAATCCCTTTAGCCACCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGCCTGGATggtgagtactagtgctaggccaaacttaatggagtgcaggccccgtccacc Alignment from Spaln_aa2Genome ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCT---------------------CCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAG---------AGAAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaaggaccctgtattcttttttcatagATGATGCAGTATGATGAGGATGACCAGGGTCCACCCACACCAAATCCCTTTAGTCCACCCACACCAAATCCCTTTAGCCACCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGCCTGGATGgtgagtactagtgctaggccaaacttaatggagtgcaggccccgtccacc Alignment from Spaln_nt2Genome ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCT---------------------CCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAGAG---------AAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaaggaccctgtattcttttttcatagATGATGCAGTATGATGAGGATGACCAGGGTCCACCCACACCAAATCCCTTTAGTCCACCCACACCAAATCCCTTTAGCCACCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGCCTGGATGgtgagtactagtgctaggccaaacttaatggagtgcaggccccgtccacc Alignment from Pairagon ACCATGCAGTTTGACGATGACGATCAGGGCCCA---------------------CCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAGA---------GAAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaaggaccctgtattcttttttcatagATGATGCAGTATGATGAGGATGACCAGGGTCCACCCACACCAAATCCCTTTAGTCCACCCACACCAAATCCCTTTAGCCACCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGCCTGGATGgtgagtactagtgctaggccaaacttaatggagtgcaggccccgtccacc Alignment from Exonerate_protein2genome CGATGACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAG---------AGAAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaaggaccctgtattcttttttcatagatgatgcagtatgatgaggatgaccagggtccacccacACCAAATCCCTTTAGTCCACCCACACCA---AATCCCTTTAGCCACCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGCCTGGATGgtgagtactagtgctaggccaaacttaatggagtgcaggccccgtccacc Alignment from Exonerate_coding2genome ACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAG---------AGAAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaaggaccctgtattcttttttcatagatgatgcagtatgatgaggatgaccagggtccacccacacCAAATCCCTTTAGTCCACCCACACCAAATCCCTTTAGCCACCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGCCTGGATGgtgagtactagtgctaggccaaacttaatggagtgcaggccccgtccacc Alignment from GeneWise ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCT---------------------CCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAG---------AGAAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaaggaccctgtattcttttttcatagATGATGCAGTATGATGAGGATGACCAGGGTCCACCCACACCAAATCCCTTTAGTCCACCCACACCAAATCCCTTTAGCCACCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGCCTGGATGgtgagtactagtgctaggccaaacttaatggagtgcaggccccgtccacc #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gaatgccagcattcctgactttgtcctagccctctcatttttctctgcagacTATGCCTTAGATAAGGACTGCATAGTAGATGGATATATGTCTGAGACAGGCAACCCTTTCCTGACCCAGTGGCAACAAAGATACTTCTACTTATTCCCCAACCGGTTTGACTGGAGGGGTGAGGGTGAAGCCCCAgtaggtgagaggccaggcagagtatagaaaggtgtagaagaccctctata Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gaatgccagcattcctgactttgtcctagccctctcatttttctctgcagacTATGCCTTAGATAAGGACTGCATAGTAGATGGATATATGTCTGAGACAGGCAACCCTTTCCTGACCCAGTGGCAACAAAGATACTTCTACTTATTCCCCAACCGGTTTGACTGGAGGGGTGAGGGTGAAGCCCCAgtaggtgagaggccaggcagagtatagaaaggtgtagaagaccctctata Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gaatgccagcattcctgactttgtcctagccctctcatttttctctgcagACTATGCCTTAGATAAGGACTGCATAGTAGATGGATATATGTCTGAGACAGGCAACCCTTTCCTGACCCAGTGGCAACAAAGATACTTCTACTTATTCCCCAACCGGTTTGACTGGAGGGGTGAGGGTGAAGCCCCAgtaggtgagaggccaggcagagtatagaaaggtgtagaagaccctctata Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gaatgccagcattcctgactttgtcctagccctctcatttttctctgcagACTATGCCTTAGATAAGGACTGCATAGTAGATGGATATATGTCTGAGACAGGCAACCCTTTCCTGACCCAGTGGCAACAAAGATACTTCTACTTATTCCCCAACCGGTTTGACTGGAGGGGTGAGGGTGAAGCCCCAgtaggtgagaggccaggcagagtatagaaaggtgtagaagaccctctata Alignment from Pairagon ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gaatgccagcattcctgactttgtcctagccctctcatttttctctgcagACTATGCCTTAGATAAGGACTGCATAGTAGATGGATATATGTCTGAGACAGGCAACCCTTTCCTGACCCAGTGGCAACAAAGATACTTCTACTTATTCCCCAACCGGTTTGACTGGAGGGGTGAGGGTGAAGCCCCAgtaggtgagaggccaggcagagtatagaaaggtgtagaagaccctctata Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCGCAGA gaatgccagcattcctgactttgtcctagccctctcatttttctctgcagACTATGCCTTAGATAAGGACTGCATAGTAGATGGATATATGTCTGAGACAGGCAACCCTTTCCTGACCCAGTGGCAACAAAGATACTTCTACTTATTCCCCAACCGGTTTGACTGGAGGGGTGAGGGTGAAGCCCCAGTAGgtgagaggccaggcagagtatagaaaggtgtagaagaccctctata Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCGCAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGAT gaatgccagcattcctgactttgtcctagccctctcatttttctctgcagACTATGCCTTAGATAAGGACTGCATAGTAGATGGATATATGTCTGAGACAGGCAACCCTTTCCTGACCCAGTGGCAACAAAGATACTTCTACTTATTCCCCAACCGGTTTGACTGGAGGGGTGAGGGTGAAGCCCCAGTAGGTGAGAGGCCAGGCAGAGTATAGAAAGGTGTAGAAGACCCTCTATA Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gaatgccagcattcctgactttgtcctagccctctcatttttctctgcagACTATGCCTTAGATAAGGACTGCATAGTAGATGGATATATGTCTGAGACAGGCAACCCTTTCCTGACCCAGTGGCAACAAAGATACTTCTACTTATTCCCCAACCGGTTTGACTGGAGGGGTGAGGGTGAAGCCCCAgtaggtgagaggccaggcagagtatagaaaggtgtagaagaccctctata #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GGgtgtgagtaccttcagattcacttcacaaatcttcttcttaatttcaggGGCACACATGGGTACATAGCTCCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAgggtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from CESAR GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GGgtgtaaggaccttcagattcacttcacaaatcttcttcttaatttcaggGGCACACATGGGTACATAGCTCCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAgggtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from Spaln_aa2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtgagtaccttcagattcacttcacaaatcttcttcttaatttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from Spaln_nt2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtgagtaccttcagattcacttcacaaatcttcttcttaatttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from Pairagon GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtgagtaccttcagattcacttcacaaatcttcttcttaatttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from Exonerate_protein2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtgagtaccttcagattcacttcacaaatcttcttcttaatttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from Exonerate_coding2genome GGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG gggtgtgagtaccttcagattcacttcacaaatcttcttcttaatttcaggGGCACACATGGGTACATAGCTCCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta Alignment from GeneWise GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GGGTgtgagtaccttcagattcacttcacaaatcttcttcttaatttcagGGGCACACATGGGTACATAGCTCCCAAGGTACTTCAAAAAGGTATAGCCTATGATAGCAGCGCTGACTGGTTTTCCCTGAGCTGCATGCTCTTTAAATTGTTGCGAGGgtgagtccaggtgggcaccctctttaaattgtgttgcaagggtgagccta #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtaagagagtttcataactgtgatttgggaattgctttgcagggGTAGAGTTGCATTATCACCTCTCGCAGCATGGGGTCTTCTCAGAAGCTGATATGTGCCTCTATGCTGCTGATATCATT------------CACATGCACAATCATTTTGTAGTTTTCAGGGATTTAAAGgtaagttcataatgccagttgcctcatggggataggccaaaaaggatctg Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtaagtgagtttcataactgtgatttgggaattgctttgcagggGTAGAGTTGCATTATCACCTCTCGCAGCATGGGGTCTTCTCAGAAGCTGATATGTGCCTCTATGCTGCTGATATCATT------------CACATGCACAATCATTTTGTAGTTTTCAGGGATTTAAAGgtaagttcataatgccagttgcctcatggggataggccaaaaaggatctg Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagagagtttcataactgtgatttgggaattgctttgcagGGGTAGAGTTGCATTATCACCTCTCGCAGCATGGGGTCTTCTCAGAAGCTGATATGTGCCTCTATGCTGCTGATATCATT------------CACATGCACAATCATTTTGTAGTTTTCAGGGATTTAAAGgtaagttcataatgccagttgcctcatggggataggccaaaaaggatctg Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagagagtttcataactgtgatttgggaattgctttgcagGGGTAGAGTTGCATTATCACCTCTCGCAGCATGGGGTCTTCTCAGAAGCTGATATGTGCCTCTATGCTGCTGATATCATT------------CACATGCACAATCATTTTGTAGTTTTCAGGGATTTAAAGgtaagttcataatgccagttgcctcatggggataggccaaaaaggatctg Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagagagtttcataactgtgatttgggaattgctttgcagGGGTAGAGTTGCATTATCACCTCTCGCAGCATGGGGTCTTCTCAGAAGCTGATATGTGCCTCTATGCTGCTGATATCATT------------CACATGCACAATCATTTTGTAGTTTTCAGGGATTTAAAGgtaagttcataatgccagttgcctcatggggataggccaaaaaggatctg Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagagagtttcataactgtgatttgggaattgctttgcagGGGTAGAGTTGCATTATCACCTCTCGCAGCATGGGGTCTTCTCAGAAGCTGATATGTGCCTCTATGCTGCTGATATCATT------------CACATGCACAATCATTTTGTAGTTTTCAGGGATTTAAAGgtaagttcataatgccagttgcctcatggggataggccaaaaaggatctg Alignment from Exonerate_coding2genome tatgaatggtaagagagtttcataactgtgatttgggaattgctttgcaggggtagagttgcattatcacctctcgcagcatggggtcttctcagaagctgatatgtgcctctatgctgctgatatcattcacatgcacaatcattttgtagttttcagggatttaaaggtaagttcataatgccagttgcctcatggggataggccaaaaaggatctg Alignment from GeneWise CATGAACGGTGGGGAC CTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGGTAAGAGAgtttcataactgtgatttgggaattgctttgcaggggtagagTTGCATTATCACCTCTCGCAGCATGGGGTCTTCTCAGAAGCTGATATGTGCCTCTATGCTGCTGATATCATT------------CACATGCACAATCATTTTGTAGTTTTCAGGGATTTAAAGgtaagttcataatgccagttgcctcatggggataggccaaaaaggatctg #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC cccctctcagttcaccttctataagacactcatccttctttgacccctagGACTGCTCCTTCACTGTGTGCATGTCATATGCATTCCACACACCGGACAAGCTAGGCTTTATCCTGGATCTTATGAATggtaagtgagtttcataactgtaaccttttttggtgtgtttagggGTAGAG Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC cccctctcagttcaccttctataagacactcatccttctttgacccctagGACTGCTCCTTCACTGTGTGCATGTCATATGCATTCCACACACCGGACAAGCTAGGCTTTATCCTGGATCTTATGAATggtaagtgagtttcataactgtgatttgggaattgctttgcagggGTAGAG Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC cccctctcagttcaccttctataagacactcatccttctttgacccctagGACTGCTCCTTCACTGTGTGCATGTCATATGCATTCCACACACCGGACAAGCTAGGCTTTATCCTGGATCTTATGAATGgtaagtgagtttcataactgtaaccttttttggtgtgtttagGGGTAGAG Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC cccctctcagttcaccttctataagacactcatccttctttgacccctagGACTGCTCCTTCACTGTGTGCATGTCATATGCATTCCACACACCGGACAAGCTAGGCTTTATCCTGGATCTTATGAATGgtaagtgagtttcataactgtaaccttttttggtgtgtttagGGGTAGAG Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC cccctctcagttcaccttctataagacactcatccttctttgacccctagGACTGCTCCTTCACTGTGTGCATGTCATATGCATTCCACACACCGGACAAGCTAGGCTTTATCCTGGATCTTATGAATGgtaagtgagtttcataactgtaaccttttttggtgtgtttagGGGTAGAG Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC cccctctcagttcaccttctataagacactcatccttctttgacccctagGACTGCTCCTTCACTGTGTGCATGTCATATGCATTCCACACACCGGACAAGCTAGGCTTTATCCTGGATCTTATGAATGgtaagtgagtttcataactgtaaccttttttggtgtgtttagGGGTAGAG Alignment from Exonerate_coding2genome cccctctcagttcaccttctataagacactcatccttctttgacccctaggactgctccttcactgtgtgcatgtcatatgcattccacacaccggacaagctaggctttatcctggatcttatgaatggtaagtgagtttcataactgtaaccttttttggtgtgtttaggggtagag Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC cccctctcagttcaccttctataagacactcatccttctttgacccctagGACTGCTCCTTCACTGTGTGCATGTCATATGCATTCCACACACCGGACAAGCTAGGCTTTATCCTGGATCTTATGAATGgtaagtgagtttcataactgtaaccttttttggtgtgtttagGGGTAGAG #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAAGAGCTACTTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAAGAGCTACTTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAAGAGCTACTTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAAGAGCTACTTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAAGAGCTACTTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAAGAGCTACTTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from Exonerate_coding2genome ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagattaaaaaatatgcaaagctggagacagaggaggagtgtgttgtccgcagccgagagatctttgagtcctacattatgaaagagctacttgcatgctcacatgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT ccccacacaaccagcctcaaacagtgataatcatgttttttaattcctagATTAAAAAATATGCAAAGCTGGAGACAGAGGAGGAGTGTGTTGTCCGCAGCCGAGAGATCTTTGAGTCCTACATTATGAAAGAGCTACTTGCATGCTCACATgtaagggcagaatttatctctcataagaagacatttatccagccaaaaaa #### Afap1l2_ID12245_18 --> 2 - 0 Original Alignment atAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tgcacccctgaagaatacacttatccaccagttcatctttcttgacgtagatACGGGGGTCCTGGCTGAGCTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGAAGGCGGGTAGACCTTGAACTTAGTATTATGGAGGTAAAAGACAACCTGAAGAAGGCAGAGACAGAGCCTACAACTCTGGGAACCGCTGTAGATACATCACACCTGGACAACATAAGTCCCCGTgtaaccggtgggtgctcagttcaagggcttccaatggagtctacactggt Alignment from CESAR atAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tgcacccctgaagaatacacttatccaccagttcatctttcttgacgtagatACGGGGGTCCTGGCTGAGCTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGAAGGCGGGTAGACCTTGAACTTAGTATTATGGAGGTAAAAGACAACCTGAAGAAGGCAGAGACAGAGCCTACAACTCTGGGAACCGCTGTAGATACATCACACCTGGACAACATAAGTCCCCGTgtaaccggtgggtgctcagttcaagggcttccaatggagtctacactggt Alignment from Spaln_aa2Genome ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tgcacccctgaagaatacacttatccaccagttcatctttcttgacgtagATACGGGGGTCCTGGCTGAGCTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGAAGGCGGGTAGACCTTGAACTTAGTATTATGGAGGTAAAAGACAACCTGAAGAAGGCAGAGACAGAGCCTACAACTCTGGGAACCGCTGTAGATACATCACACCTGGACAACATAAGTCCCCGTgtaaccggtgggtgctcagttcaagggcttccaatggagtctacactggt Alignment from Spaln_nt2Genome ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tgcacccctgaagaatacacttatccaccagttcatctttcttgacgtagATACGGGGGTCCTGGCTGAGCTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGAAGGCGGGTAGACCTTGAACTTAGTATTATGGAGGTAAAAGACAACCTGAAGAAGGCAGAGACAGAGCCTACAACTCTGGGAACCGCTGTAGATACATCACACCTGGACAACATAAGTCCCCGTgtaaccggtgggtgctcagttcaagggcttccaatggagtctacactggt Alignment from Pairagon ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tgcacccctgaagaatacacttatccaccagttcatctttcttgacgtagATACGGGGGTCCTGGCTGAGCTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGAAGGCGGGTAGACCTTGAACTTAGTATTATGGAGGTAAAAGACAACCTGAAGAAGGCAGAGACAGAGCCTACAACTCTGGGAACCGCTGTAGATACATCACACCTGGACAACATAAGTCCCCGTgtaaccggtgggtgctcagttcaagggcttccaatggagtctacactggt Alignment from Exonerate_protein2genome ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tgcacccctgaagaatacacttatccaccagttcatctttcttgacgtagATACGGGGGTCCTGGCTGAGCTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGAAGGCGGGTAGACCTTGAACTTAGTATTATGGAGGTAAAAGACAACCTGAAGAAGGCAGAGACAGAGCCTACAACTCTGGGAACCGCTGTAGATACATCACACCTGGACAACATAAGTCCCCGTgtaaccggtgggtgctcagttcaagggcttccaatggagtctacactggt Alignment from Exonerate_coding2genome ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tgcacccctgaagaatacacttatccaccagttcatctttcttgacgtagATACGGGGGTCCTGGCTGAGCTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGAAGGCGGGTAGACCTTGAACTTAGTATTATGGAGGTAAAAGACAACCTGAAGAAGGCAGAGACAGAGCCTACAACTCTGGGAACCGCTGTAGATACATCACACCTGGACAACATAAGTCCCCGTgtaaccggtgggtgctcagttcaagggcttccaatggagtctacactggt Alignment from GeneWise --AAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tgcacccctgaagaatacacttatccaccagttcatctttcttgacgtagATACGGGGGTCCTGGCTGAGCTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGAAGGCGGGTAGACCTTGAACTTAGTATTATGGAGGTAAAAGACAACCTGAAGAAGGCAGAGACAGAGCCTACAACTCTGGGAACCGCTGTAGATACATCACACCTGGACAACATAAGTCCCCGTgtaaccggtgggtgctcagttcaagggcttccaatggagtctacactggt #### Afap1l2_ID12253_10 --> 0 - 1 Original Alignment CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATg ttgtctttgcagtatcataaaccatttaagatcatggctcactcttgcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATggttggtcagtaaggatccccaaagggcttttttaagcgtgtaggccagcc Alignment from CESAR CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATg ttgtctttgcagtatcataaaccatttaagatcatggctcactcttgcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATggttggtcagtaaggatccccaaagggcttttttaagcgtgtaggccagcc Alignment from Spaln_aa2Genome CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG ttgtctttgcagtatcataaaccatttaagatcatggctcactcttgcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATGgttggtcagtaaggatccccaaagggcttttttaagcgtgtaggccagcc Alignment from Spaln_nt2Genome CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG ttgtctttgcagtatcataaaccatttaagatcatggctcactcttgcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATGgttggtcagtaaggatccccaaagggcttttttaagcgtgtaggccagcc Alignment from Pairagon CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG ttgtctttgcagtatcataaaccatttaagatcatggctcactcttgcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATGgttggtcagtaaggatccccaaagggcttttttaagcgtgtaggccagcc Alignment from Exonerate_protein2genome CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG ttgtctttgcagtatcataaaccatttaagatcatggctcactcttgcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATGgttggtcagtaaggatccccaaagggcttttttaagcgtgtaggccagcc Alignment from Exonerate_coding2genome ttgtctttgcagtatcataaaccatttaagatcatggctcactcttgcagtctgatattgctgcaaaatacctctcagcagcagagtacggaattaccatcaatggtcaccctgagattccagaaactaaagatggttggtcagtaaggatccccaaagggcttttttaagcgtgtaggccagcc Alignment from GeneWise CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG ttgtctttgcagtatcataaaccatttaagatcatggctcactcttgcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATGgttggtcagtaaggatccccaaagggcttttttaagcgtgtaggccagcc #### Afap1l2_ID12258_5 --> 2 - 0 Original Alignment ttCCCGAGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATG tggattagtattattagccactggatggctaacttggatttctgtttcagtcCCCAAGGAGCGG------CTTACAAATGGAGAGCCAAGCCAACATTCTTCAGCTCCTCAAGGCACTCTGCCTGATCTCCCT---CCCAAAATGgtaggctacttctcaggttagagcatgtgatcatgacagcattgtacacc Alignment from CESAR ttCCCGAGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATG tggattagtattattagccactggatggctaacttggatttctgtttcagtcCCCAAGGAGCGG------CTTACAAATGGAGAGCCAAGCCAACATTCTTCAGCTCCTCAAGGCACTCTGCCTGATCTCCCT---CCCAAAATGgtaggctacttctcaggttagagcatgtgatcatgacagcattgtacacc Alignment from Spaln_aa2Genome TTCCCGAGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATG tggattagtattattagccactggatggctaacttggatttctgtttcagTCCCCAAGGAGCGG------CTTACAAATGGAGAGCCAAGCCAACATTCTTCAGCTCCTCAAGGCACTCTGCCTGATCTC---CCTCCCAAAATGgtaggctacttctcaggttagagcatgtgatcatgacagcattgtacacc Alignment from Spaln_nt2Genome TTCCCGAGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATG tggattagtattattagccactggatggctaacttggatttctgtttcagTCCCCAAGGAGCGG------CTTACAAATGGAGAGCCAAGCCAACATTCTTCAGCTCCTCAAGGCACTCTGCCTGATCTCCCT---CCCAAAATGgtaggctacttctcaggttagagcatgtgatcatgacagcattgtacacc Alignment from Pairagon TTCCCGAGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATG tggattagtattattagccactggatggctaacttggatttctgtttcagTCCCCAAGGAGCGG------CTTACAAATGGAGAGCCAAGCCAACATTCTTCAGCTCCTCAAGGCACTCTGCCTGATCTCCCT---CCCAAAATGgtaggctacttctcaggttagagcatgtgatcatgacagcattgtacacc Alignment from Exonerate_protein2genome TTCCCGAGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAG tggattagtattattagccactggatggctaacttggatttctgtttcagTCCCCAAGGAGCGG------CTTACAAATGGAGAGCCAAGCCAACATTCTTCAGCTCCTCAAGGCACTCTGCCTGATCTCCCTCCCAAAATGgtaggctacttctcaggttagagcatgtgatcatgacagcattgtacacc Alignment from Exonerate_coding2genome tggattagtattattagccactggatggctaacttggatttctgtttcagtccccaaggagcggcttacaaatggagagccaagccaacattcttcagctcctcaaggcactctgcctgatctccctcccaaaatggtaggctacttctcaggttagagcatgtgatcatgacagcattgtacacc Alignment from GeneWise TTCCCGAGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATG tggattagtattattagccactggatggctaacttggatttctgtttcagTCCCCAAGGAGCGG------CTTACAAATGGAGAGCCAAGCCAACATTCTTCAGCTCCTCAAGGCACTCTGCCTGATCTCCCTCCC---AAAATGgtaggctacttctcaggttagagcatgtgatcatgacagcattgtacacc #### Ak3_ID6206_2 --> 2 - 1 Original Alignment aaATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATg gacttataagattattacaaacaccgccaaacctgcaacttcttttccagaaATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGTTGTTGGATggtgtgtaaactatttgtctggctttgcaaaaattgtgcactagcaaaggc Alignment from CESAR aaATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATg gacttataagattattacaaacaccgccaaacctgcaacttcttttccagaaATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGTTGTTGGATggtgtgtaaactatttgtctggctttgcaaaaattgtgcactagcaaaggc Alignment from Spaln_aa2Genome AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gacttataagattattacaaacaccgccaaacctgcaacttcttttccagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGTTGTTGGATGgtgtgtaaactatttgtctggctttgcaaaaattgtgcactagcaaaggc Alignment from Spaln_nt2Genome AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gacttataagattattacaaacaccgccaaacctgcaacttcttttccagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGTTGTTGGATGgtgtgtaaactatttgtctggctttgcaaaaattgtgcactagcaaaggc Alignment from Pairagon AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gacttataagattattacaaacaccgccaaacctgcaacttcttttccagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGTTGTTGGATGgtgtgtaaactatttgtctggctttgcaaaaattgtgcactagcaaaggc Alignment from Exonerate_protein2genome AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gacttataagattattacaaacaccgccaaacctgcaacttcttttccagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGTTGTTGGATGgtgtgtaaactatttgtctggctttgcaaaaattgtgcactagcaaaggc Alignment from Exonerate_coding2genome AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gacttataagattattacaaacaccgccaaacctgcaacttcttttccagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGTTGTTGGATGgtgtgtaaactatttgtctggctttgcaaaaattgtgcactagcaaaggc Alignment from GeneWise AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gacttataagattattacaaacaccgccaaacctgcaacttcttttccagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGTTGTTGGATGgtgtgtaaactatttgtctggctttgcaaaaattgtgcactagcaaaggc #### Aldh18a1_ID7973_10 --> 0 - 1 Original Alignment AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGg atctcccctagccaacattaaagtgcttcctgtcttccctctctttgtagAGAGCTGAAATTATAAATCATCTAGCTGACTTGCTGACAGAGCAGCGGGAAGAAATCCTGCTAGCCACTAAAAAAGACTTGGAGGAGGCAGATggtgagtgggcttgttaatgacttttttttaggagagtatataccaaaaga Alignment from CESAR AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGg atctcccctagccaacattaaagtgcttcctgtcttccctctctttgtagAGAGCTGAAATTATAAATCATCTAGCTGACTTGCTGACAGAGCAGCGGGAAGAAATCCTGCTAGCCACTAAAAAAGACTTGGAGGAGGCAGATggtgagtgggcttgttaatgacttttttttaggagagtatataccaaaaga Alignment from Spaln_aa2Genome AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG atctcccctagccaacattaaagtgcttcctgtcttccctctctttgtagAGAGCTGAAATTATAAATCATCTAGCTGACTTGCTGACAGAGCAGCGGGAAGAAATCCTGCTAGCCACTAAAAAAGACTTGGAGGAGGCAGATGgtgagtgggcttgttaatgacttttttttaggagagtatataccaaaaga Alignment from Spaln_nt2Genome AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG atctcccctagccaacattaaagtgcttcctgtcttccctctctttgtagAGAGCTGAAATTATAAATCATCTAGCTGACTTGCTGACAGAGCAGCGGGAAGAAATCCTGCTAGCCACTAAAAAAGACTTGGAGGAGGCAGATGgtgagtgggcttgttaatgacttttttttaggagagtatataccaaaaga Alignment from Pairagon AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG atctcccctagccaacattaaagtgcttcctgtcttccctctctttgtagAGAGCTGAAATTATAAATCATCTAGCTGACTTGCTGACAGAGCAGCGGGAAGAAATCCTGCTAGCCACTAAAAAAGACTTGGAGGAGGCAGATGgtgagtgggcttgttaatgacttttttttaggagagtatataccaaaaga Alignment from Exonerate_protein2genome AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG atctcccctagccaacattaaagtgcttcctgtcttccctctctttgtagAGAGCTGAAATTATAAATCATCTAGCTGACTTGCTGACAGAGCAGCGGGAAGAAATCCTGCTAGCCACTAAAAAAGACTTGGAGGAGGCAGATGgtgagtgggcttgttaatgacttttttttaggagagtatataccaaaaga Alignment from Exonerate_coding2genome AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG atctcccctagccaacattaaagtgcttcctgtcttccctctctttgtagAGAGCTGAAATTATAAATCATCTAGCTGACTTGCTGACAGAGCAGCGGGAAGAAATCCTGCTAGCCACTAAAAAAGACTTGGAGGAGGCAGATGgtgagtgggcttgttaatgacttttttttaggagagtatataccaaaaga Alignment from GeneWise AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGGGAAG atctcccctagccaacattaaagtgcttcctgtcttccctctctttgtagAGAGCTGAAATTATAAATCATCTAGCTGACTTGCTGACAGAGCAGCGGGAAGAAATCCTGCTAGCCACTAAAAAAGACTTGGAGGAGGCAGATGGTGAgtgggcttgttaatgacttttttttaggagagtatataccaaaaga #### Aldh18a1_ID7974_9 --> 2 - 0 Original Alignment gtCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccaggtaatacaagtagaatatttttttctactacctaggtCCTACAGTCGAACAGCAGGGGGAGATGGCTTGCACTGGTGGAAGAATGATATCAACCTTGGAGCCTGAACAGgtaagttaggtgtgtttcaaatcctgggtctgtcagagtctgatagtctg Alignment from CESAR gtCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccaggtaatacaagtagaatatttttttctactacctaggtCCTACAGTCGAACAGCAGGGGGAGATGGCTTGCACTGGTGGAAGAATGATATCAACCTTGGAGCCTGAACAGgtaagttaggtgtgtttcaaatcctgggtctgtcagagtctgatagtctg Alignment from Spaln_aa2Genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccaggtaatacaagtagaatatttttttctactacctagGTCCTACAGTCGAACAGCAGGGGGAGATGGCTTGCACTGGTGGAAGAATGATATCAACCTTGGAGCCTGAACAGgtaagttaggtgtgtttcaaatcctgggtctgtcagagtctgatagtctg Alignment from Spaln_nt2Genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccaggtaatacaagtagaatatttttttctactacctagGTCCTACAGTCGAACAGCAGGGGGAGATGGCTTGCACTGGTGGAAGAATGATATCAACCTTGGAGCCTGAACAGgtaagttaggtgtgtttcaaatcctgggtctgtcagagtctgatagtctg Alignment from Pairagon GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccaggtaatacaagtagaatatttttttctactacctagGTCCTACAGTCGAACAGCAGGGGGAGATGGCTTGCACTGGTGGAAGAATGATATCAACCTTGGAGCCTGAACAGgtaagttaggtgtgtttcaaatcctgggtctgtcagagtctgatagtctg Alignment from Exonerate_protein2genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccaggtaatacaagtagaatatttttttctactacctagGTCCTACAGTCGAACAGCAGGGGGAGATGGCTTGCACTGGTGGAAGAATGATATCAACCTTGGAGCCTGAACAGgtaagttaggtgtgtttcaaatcctgggtctgtcagagtctgatagtctg Alignment from Exonerate_coding2genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccaggtaatacaagtagaatatttttttctactacctagGTCCTACAGTCGAACAGCAGGGGGAGATGGCTTGCACTGGTGGAAGAATGATATCAACCTTGGAGCCTGAACAGgtaagttaggtgtgtttcaaatcctgggtctgtcagagtctgatagtctg Alignment from GeneWise ---GTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTGGTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG gtaatacaagtagAATATTTTTTTCTACTAC---------------CTAGGTCCTACAGTCGAACAGCAGGGGGAGATGGCTTGCACTGGTGGAAGAATGATATCAACCTTGGAGCCTGAACAGgtaagttaggtgtgtttcaaatcctgggtctgtcagagtctgatagtctg #### Aldh18a1_ID7977_6 --> 0 - 1 Original Alignment GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAg tatacatagctgtgaaaatccaaactggcctatcctctcacccctggcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCATTGATTGTCCTGTCAGATGTAGAGggtaagtctgcatcttcagcttgcagacgctggacaggtgagcattggata Alignment from CESAR GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAg tatacatagctgtgaaaatccaaactggcctatcctctcacccctggcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCATTGATTGTCCTGTCAGATGTAGAGggtaagtctgcatcttcagcttgcagacgctggacaggtgagcattggata Alignment from Spaln_aa2Genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG tatacatagctgtgaaaatccaaactggcctatcctctcacccctggcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCATTGATTGTCCTGTCAGATGTAGAGGgtaagtctgcatcttcagcttgcagacgctggacaggtgagcattggata Alignment from Spaln_nt2Genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG tatacatagctgtgaaaatccaaactggcctatcctctcacccctggcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCATTGATTGTCCTGTCAGATGTAGAGGgtaagtctgcatcttcagcttgcagacgctggacaggtgagcattggata Alignment from Pairagon GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG tatacatagctgtgaaaatccaaactggcctatcctctcacccctggcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCATTGATTGTCCTGTCAGATGTAGAGGgtaagtctgcatcttcagcttgcagacgctggacaggtgagcattggata Alignment from Exonerate_protein2genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG tatacatagctgtgaaaatccaaactggcctatcctctcacccctggcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCATTGATTGTCCTGTCAGATGTAGAGGgtaagtctgcatcttcagcttgcagacgctggacaggtgagcattggata Alignment from Exonerate_coding2genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG tatacatagctgtgaaaatccaaactggcctatcctctcacccctggcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCATTGATTGTCCTGTCAGATGTAGAGGgtaagtctgcatcttcagcttgcagacgctggacaggtgagcattggata Alignment from GeneWise GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG tatacatagctgtgaaaatccaaactggcctatcctctcacccctggcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCATTGATTGTCCTGTCAGATGTAGAGGgtaagtctgcatcttcagcttgcagacgctggacaggtgagcattggata #### Aldh18a1_ID7981_2 --> 2 - 0 Original Alignment atCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG caaatgcctatgtcagtcgatatctgaggccttgtctctgtgttgagcagatCGTGACCAACCTTCTGCTATCCGGCATATTCGCTCATGGAGCAATATCCCATTTATTACAGTGCCCCTCAGCCATGCCCATGGTAAGCCCTTTGCCCACCAGAGTGAGCTGAAGCACGCAAAGCGAATTGAAGTAAAACTTGGCAGCGCTGTAGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCCCCCATCGTTGAACAGgtgagtgtcatccaaagcaggtagtagcatagttgttagatggaccaccc Alignment from CESAR atCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG caaatgcctatgtcagtcgatatctgaggccttgtctctgtgttgagcagatCGTGACCAACCTTCTGCTATCCGGCATATTCGCTCATGGAGCAATATCCCATTTATTACAGTGCCCCTCAGCCATGCCCATGGTAAGCCCTTTGCCCACCAGAGTGAGCTGAAGCACGCAAAGCGAATTGAAGTAAAACTTGGCAGCGCTGTAGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCCCCCATCGTTGAACAGgtgagtgtcatccaaagcaggtagtagcatagttgttagatggaccaccc Alignment from Spaln_aa2Genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG caaatgcctatgtcagtcgatatctgaggccttgtctctgtgttgagcagATCGTGACCAACCTTCTGCTATCCGGCATATTCGCTCATGGAGCAATATCCCATTTATTACAGTGCCCCTCAGCCATGCCCATGGTAAGCCCTTTGCCCACCAGAGTGAGCTGAAGCACGCAAAGCGAATTGAAGTAAAACTTGGCAGCGCTGTAGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCCCCCATCGTTGAACAGgtgagtgtcatccaaagcaggtagtagcatagttgttagatggaccaccc Alignment from Spaln_nt2Genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG caaatgcctatgtcagtcgatatctgaggccttgtctctgtgttgagcagATCGTGACCAACCTTCTGCTATCCGGCATATTCGCTCATGGAGCAATATCCCATTTATTACAGTGCCCCTCAGCCATGCCCATGGTAAGCCCTTTGCCCACCAGAGTGAGCTGAAGCACGCAAAGCGAATTGAAGTAAAACTTGGCAGCGCTGTAGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCCCCCATCGTTGAACAGgtgagtgtcatccaaagcaggtagtagcatagttgttagatggaccaccc Alignment from Pairagon ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG caaatgcctatgtcagtcgatatctgaggccttgtctctgtgttgagcagATCGTGACCAACCTTCTGCTATCCGGCATATTCGCTCATGGAGCAATATCCCATTTATTACAGTGCCCCTCAGCCATGCCCATGGTAAGCCCTTTGCCCACCAGAGTGAGCTGAAGCACGCAAAGCGAATTGAAGTAAAACTTGGCAGCGCTGTAGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCCCCCATCGTTGAACAGgtgagtgtcatccaaagcaggtagtagcatagttgttagatggaccaccc Alignment from Exonerate_protein2genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG caaatgcctatgtcagtcgatatctgaggccttgtctctgtgttgagcagATCGTGACCAACCTTCTGCTATCCGGCATATTCGCTCATGGAGCAATATCCCATTTATTACAGTGCCCCTCAGCCATGCCCATGGTAAGCCCTTTGCCCACCAGAGTGAGCTGAAGCACGCAAAGCGAATTGAAGTAAAACTTGGCAGCGCTGTAGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCCCCCATCGTTGAACAGgtgagtgtcatccaaagcaggtagtagcatagttgttagatggaccaccc Alignment from Exonerate_coding2genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG caaatgcctatgtcagtcgatatctgaggccttgtctctgtgttgagcagATCGTGACCAACCTTCTGCTATCCGGCATATTCGCTCATGGAGCAATATCCCATTTATTACAGTGCCCCTCAGCCATGCCCATGGTAAGCCCTTTGCCCACCAGAGTGAGCTGAAGCACGCAAAGCGAATTGAAGTAAAACTTGGCAGCGCTGTAGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCCCCCATCGTTGAACAGgtgagtgtcatccaaagcaggtagtagcatagttgttagatggaccaccc Alignment from GeneWise ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG caaatgcctatgtcagtcgatatctgaggccttgtctctgtgttgagcagATCGTGACCAACCTTCTGCTATCCGGCATATTCGCTCATGGAGCAATATCCCATTTATTACAGTGCCCCTCAGCCATGCCCATGGTAAGCCCTTTGCCCACCAGAGTGAGCTGAAGCACGCAAAGCGAATTGAAGTAAAACTTGGCAGCGCTGTAGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCCCCCATCGTTGAACAGgtgagtgtcatccaaagcaggtagtagcatagttgttagatggaccaccc #### Aldh1a1_ID4788_2 --> 0 - 0 Original Alignment ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG ttacactactcaagaaagtgtaccttgttttctcactttggctgaggcagATCTTCATAAACAATGGATGGCATAACTCTGTGAGTGGAAAGAAATTCCCTGTTCTAAATCCAGCAACTGAGGAGGTTGTCTGTCATGTGGAAGAGGGTGACAAAgtgagtaatgaagttggcacaggttaacaggaaccctatatgcaagcttc Alignment from CESAR ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG ttacactactcaagaaagtgtaccttgttttctcactttggctgaggcagATCTTCATAAACAATGGATGGCATAACTCTGTGAGTGGAAAGAAATTCCCTGTTCTAAATCCAGCAACTGAGGAGGTTGTCTGTCATGTGGAAGAGGGTGACAAAgtgagtaatgaagttggcacaggttaacaggaaccctatatgcaagcttc Alignment from Spaln_aa2Genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG ttacactactcaagaaagtgtaccttgttttctcactttggctgaggcagATCTTCATAAACAATGGATGGCATAACTCTGTGAGTGGAAAGAAATTCCCTGTTCTAAATCCAGCAACTGAGGAGGTTGTCTGTCATGTGGAAGAGGGTGACAAAgtgagtaatgaagttggcacaggttaacaggaaccctatatgcaagcttc Alignment from Spaln_nt2Genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG ttacactactcaagaaagtgtaccttgttttctcactttggctgaggcagATCTTCATAAACAATGGATGGCATAACTCTGTGAGTGGAAAGAAATTCCCTGTTCTAAATCCAGCAACTGAGGAGGTTGTCTGTCATGTGGAAGAGGGTGACAAAgtgagtaatgaagttggcacaggttaacaggaaccctatatgcaagcttc Alignment from Pairagon ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG ttacactactcaagaaagtgtaccttgttttctcactttggctgaggcagATCTTCATAAACAATGGATGGCATAACTCTGTGAGTGGAAAGAAATTCCCTGTTCTAAATCCAGCAACTGAGGAGGTTGTCTGTCATGTGGAAGAGGGTGACAAAgtgagtaatgaagttggcacaggttaacaggaaccctatatgcaagcttc Alignment from Exonerate_protein2genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG ttacactactcaagaaagtgtaccttgttttctcactttggctgaggcagATCTTCATAAACAATGGATGGCATAACTCTGTGAGTGGAAAGAAATTCCCTGTTCTAAATCCAGCAACTGAGGAGGTTGTCTGTCATGTGGAAGAGGGTGACAAAgtgagtaatgaagttggcacaggttaacaggaaccctatatgcaagcttc Alignment from Exonerate_coding2genome AAGATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG ttacactactcaagaaagtgtaccttgttttctcactttggctgaggCAGATCTTCATAAACAATGGATGGCATAACTCTGTGAGTGGAAAGAAATTCCCTGTTCTAAATCCAGCAACTGAGGAGGTTGTCTGTCATGTGGAAGAGGGTGACAAAgtgagtaatgaagttggcacaggttaacaggaaccctatatgcaagcttc Alignment from GeneWise ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG ttacactactcaagaaagtgtaccttgttttctcactttggctgaggcagATCTTCATAAACAATGGATGGCATAACTCTGTGAGTGGAAAGAAATTCCCTGTTCTAAATCCAGCAACTGAGGAGGTTGTCTGTCATGTGGAAGAGGGTGACAAAgtgagtaatgaagttggcacaggttaacaggaaccctatatgcaagcttc #### Aldh1a1_ID4799_12 --> 1 - 2 Original Alignment gGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAAct acactcatacctttagggactcaaaatataaaacttgttcttctttacaggGTAAACTGCTACATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTTACTACATCTGGCAATGGACGAGAActgtaaatgaagaggtaacaatgtttgcatatgtcttttcaaatgggctctg Alignment from CESAR gGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAAct acactcatacctttagggactcaaaatataaaacttgttcttctttacaggGTAAACTGCTACATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTTACTACATCTGGCAATGGACGAGAActgtaaatgaagaggtaacaatgtttgcatatgtcttttcaaatgggctctg Alignment from Spaln_aa2Genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT acactcatacctttagggactcaaaatataaaacttgttcttctttacagGGTAAACTGCTACATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTTACTACATCTGGCAATGGACGAGAACTgtaaatgaagaggtaacaatgtttgcatatgtcttttcaaatgggctctg Alignment from Spaln_nt2Genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT acactcatacctttagggactcaaaatataaaacttgttcttctttacagGGTAAACTGCTACATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTTACTACATCTGGCAATGGACGAGAACTgtaaatgaagaggtaacaatgtttgcatatgtcttttcaaatgggctctg Alignment from Pairagon GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT acactcatacctttagggactcaaaatataaaacttgttcttctttacagGGTAAACTGCTACATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTTACTACATCTGGCAATGGACGAGAACTgtaaatgaagaggtaacaatgtttgcatatgtcttttcaaatgggctctg Alignment from Exonerate_protein2genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT acactcatacctttagggactcaaaatataaaacttgttcttctttacagGGTAAACTGCTACATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTTACTACATCTGGCAATGGACGAGAACTgtaaatgaagaggtaacaatgtttgcatatgtcttttcaaatgggctctg Alignment from Exonerate_coding2genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT acactcatacctttagggactcaaaatataaaacttgttcttctttacagGGTAAACTGCTACATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTTACTACATCTGGCAATGGACGAGAACTgtaaatgaagaggtaacaatgtttgcatatgtcttttcaaatgggctctg Alignment from GeneWise GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACTG acactcatacctttagggactcaaaatataaaacttgttcttctttacagGGTAAACTGCTACATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTTACTACATCTGGCAATGGACGAGAACTGtaaatgaagaggtaacaatgtttgcatatgtcttttcaaatgggctctg #### Aldh3b1_ID202_5 --> 0 - 1 Original Alignment AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAg gaactcaaaccaaagcacagatgcattcttcccccctcttttggctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGTTGCTTGAGGATAAGTTTGAATACATCTTCTTTACAggtgaggttagatggagtaagtcctcactaaagtgctcttatcaccacttc Alignment from CESAR AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAg gaactcaaaccaaagcacagatgcattcttcccccctcttttggctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGTTGCTTGAGGATAAGTTTGAATACATCTTCTTTACAggtgaggttagatggagtaagtcctcactaaagtgctcttatcaccacttc Alignment from Spaln_aa2Genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gaactcaaaccaaagcacagatgcattcttcccccctcttttggctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGTTGCTTGAGGATAAGTTTGAATACATCTTCTTTACAGgtgaggttagatggagtaagtcctcactaaagtgctcttatcaccacttc Alignment from Spaln_nt2Genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gaactcaaaccaaagcacagatgcattcttcccccctcttttggctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGTTGCTTGAGGATAAGTTTGAATACATCTTCTTTACAGgtgaggttagatggagtaagtcctcactaaagtgctcttatcaccacttc Alignment from Pairagon AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gaactcaaaccaaagcacagatgcattcttcccccctcttttggctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGTTGCTTGAGGATAAGTTTGAATACATCTTCTTTACAGgtgaggttagatggagtaagtcctcactaaagtgctcttatcaccacttc Alignment from Exonerate_protein2genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gaactcaaaccaaagcacagatgcattcttcccccctcttttggctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGTTGCTTGAGGATAAGTTTGAATACATCTTCTTTACAGgtgaggttagatggagtaagtcctcactaaagtgctcttatcaccacttc Alignment from Exonerate_coding2genome AGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGAGCTGCTTTACTGTGGTACT-GGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG GAACTCAAACCAAAGCACAGATGCATTCTTCCCCCCTCTTTTGGCTGCAGAGCTGCTTTACTGTGGTACTTGGT-GGTCACCAGGAAACAGGGCTGTTGCTTGAGGATAAGTTTGAATACATCTTCTTTACAGgtgaggttagatggagtaagtcctcactaaagtgctcttatcaccacttc Alignment from GeneWise AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gaactcaaaccaaagcacagatgcattcttcccccctcttttggctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGTTGCTTGAGGATAAGTTTGAATACATCTTCTTTACAGgtgaggttagatggagtaagtcctcactaaagtgctcttatcaccacttc #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaagatgtgtctgtcggtgctcttgtgtccattccagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGGACTTGGCCCTGAAGAATTTGCAGATGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtatggcctgttggtgtactgtagctccccccattcagaccctacccttg Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaagatgtgtctgtcggtgctcttgtgtccattccagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGGACTTGGCCCTGAAGAATTTGCAGATGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtatggcctgttggtgtactgtagctccccccattcagaccctacccttg Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaagatgtgtctgtcggtgctcttgtgtccattccagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGGACTTGGCCCTGAAGAATTTGCAGATGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtatggcctgttggtgtactgtagctccccccattcagaccctacccttg Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaagatgtgtctgtcggtgctcttgtgtccattccagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGGACTTGGCCCTGAAGAATTTGCAGATGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtatggcctgttggtgtactgtagctccccccattcagaccctacccttg Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaagatgtgtctgtcggtgctcttgtgtccattccagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGGACTTGGCCCTGAAGAATTTGCAGATGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtatggcctgttggtgtactgtagctccccccattcagaccctacccttg Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaagatgtgtctgtcggtgctcttgtgtccattccagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGGACTTGGCCCTGAAGAATTTGCAGATGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtatggcctgttggtgtactgtagctccccccattcagaccctacccttg Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaagatgtgtctgtcggtgctcttgtgtccattccagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGGACTTGGCCCTGAAGAATTTGCAGATGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtatggcctgttggtgtactgtagctccccccattcagaccctacccttg Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG aatggtttgttagtaagatgtgtctgtcggtgctcttgtgtccattccagTCTGGCTTTGAGTCAGACATGAGTGAGGTTTTTCTGTGTGAAAATGAGGTGGACTTGGCCCTGAAGAATTTGCAGATGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtatggcctgttggtgtactgtagctccccccattcagaccctacccttg #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagcgCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGCTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagcgCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGCTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGCTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGCTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGCTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGCTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGCTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cacacaagtcttctgtacagtcttcattctgcctgcctgccctactctagCGCCGACAGATCTAGTAGATGTTCATGCAACAGAGCCCCTTATGCAAGAGGAAATATTTGGGCCCATCCTTCCTTTAGTGACTGTAAGAAGCTTGGATGAAGCCATTGTATCCAATAACCAATGGGAGAAACCACTAGCATTGTTTGCCTTTTCAAACAACAACCAGgtgagttggtggtgagacaagtcaagtgtggccagactggtcagaccttt #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG gccagctagatttcttttaaatctgtgtggacgataccacccttcctcagggGGT---TATCCTTGTGAGGTAGATTCCACAGTGTTTGAGGCGTCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAGGATGATGAGCTTCTGCAGTTTGCTATCCAACAAAGCCTCTTGGAGGCAGCAATACAGGCAGAGCAGgtaattagtgatacagttagctaatgcttcaggcccatgggggcacatct Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG gccagctagatttcttttaaatctgtgtggacgataccacccttcctcagggGGT---TATCCTTGTGAGGTAGATTCCACAGTGTTTGAGGCGTCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAGGATGATGAGCTTCTGCAGTTTGCTATCCAACAAAGCCTCTTGGAGGCAGCAATACAGGCAGAGCAGgtaattagtgatacagttagctaatgcttcaggcccatgggggcacatct Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG gccagctagatttcttttaaatctgtgtggacgataccacccttcctcagGGGGT---TATCCTTGTGAGGTAGATTCCACAGTGTTTGAGGCGTCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAGGATGATGAGCTTCTGCAGTTTGCTATCCAACAAAGCCTCTTGGAGGCAGCAATACAGGCAGAGCAGgtaattagtgatacagttagctaatgcttcaggcccatgggggcacatct Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG gccagctagatttcttttaaatctgtgtggacgataccacccttcctcagGGGG---TTATCCTTGTGAGGTAGATTCCACAGTGTTTGAGGCGTCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAGGATGATGAGCTTCTGCAGTTTGCTATCCAACAAAGCCTCTTGGAGGCAGCAATACAGGCAGAGCAGgtaattagtgatacagttagctaatgcttcaggcccatgggggcacatct Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG gccagctagatttcttttaaatctgtgtggacgataccacccttcctcagGGGG---TTATCCTTGTGAGGTAGATTCCACAGTGTTTGAGGCGTCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAGGATGATGAGCTTCTGCAGTTTGCTATCCAACAAAGCCTCTTGGAGGCAGCAATACAGGCAGAGCAGgtaattagtgatacagttagctaatgcttcaggcccatgggggcacatct Alignment from Exonerate_protein2genome gccagctagatttcttttaaatctgtgtggacgataccacccttcctcagggggttatccttgtgaggtagattccacagtgtttgaggcgtctgagggatacagtgccttaggtgccaagcacagtgagcctctccaggataaggatgatgagcttctgcagtttgctatccaacaaagcctcttggaggcagcaatacaggcagagcaggtaattagtgatacagttagctaatgcttcaggcccatgggggcacatct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise --GGAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG gccagctagatttcttttaaatctgtgtggacgataccacccttcctcagGGGGT------TATCCTTGTGAGGTAGATTCCACAGTGTTTGAGGCGTCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAGGATGATGAGCTTCTGCAGTTTGCTATCCAACAAAGCCTCTTGGAGGCAGCAATACAGGCAGAGCAGgtaattagtgatacagttagctaatgcttcaggcccatgggggcacatct #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacagataaacaagtcaactgacctcttctgttccccaggaGGAAAGACACCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCACCC---ACATTGgtgagattggttaaaccacagaccgcaaaggctgggtgagtgttgagagg Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacagataaacaagtcaactgacctcttctgttccccaggaGGAAAGACACCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCACCC---ACATTGgtgagattggttaaaccacagaccgcaaaggctgggtgagtgttgagagg Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacagataaacaagtcaactgacctcttctgttccccagGAGGAAAGACACCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCACCC---ACATTGgtgagattggttaaaccacagaccgcaaaggctgggtgagtgttgagagg Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacagataaacaagtcaactgacctcttctgttccccagGAGGAAAGACACCATTCCAATCCTTCTTGGGTATGGCCCAGCAACA-TTCACCCACA--TTGgtgagattggttaaaccacagaccgcaaaggctgggtgagtgttgagagg Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacagataaacaagtcaactgacctcttctgttccccagGAGGAAAGACACCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCACC---CACATTGgtgagattggttaaaccacagaccgcaaaggctgggtgagtgttgagagg Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacagataaacaagtcaactgacctcttctgttccccagGAGGAAAGACACCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCACCC---ACATTGgtgagattggttaaaccacagaccgcaaaggctgggtgagtgttgagagg Alignment from Exonerate_coding2genome GGGGGAAGACTCCATTCCAGTCCTTCCTG gcctgcctacttacagataaacaagtcaactgacctcttctgttccccaggaggaaagacaccattccaatccttcttgggtatggcccagcaacattcacccacattggtgagattggttaaaccacagACCGCAAAGGCTGGG-TGAGTGTTGAGAG Alignment from GeneWise GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG gcctgcctacttacagataaacaagtcaactgacctcttctgttccccagGAGGAAAGACACCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCACCC---ACATTGgtgagattggttaaaccacagaccgcaaaggctgggtgagtgttgagagg #### Ankrd13d_ID466_7 --> 1 - 0 Original Alignment gAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG tacctaattccgtagaatttctgcctgtgtctctttctgcttgcacccaggAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTCAGTGGCTATGAGGCAAAGgtgagttgaaaagctaaatcggttggttgccttctcaatgtaaagttccc Alignment from CESAR gAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG tacctaattccgtagaatttctgcctgtgtctctttctgcttgcacccaggAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTCAGTGGCTATGAGGCAAAGgtgagttgaaaagctaaatcggttggttgccttctcaatgtaaagttccc Alignment from Spaln_aa2Genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG tacctaattccgtagaatttctgcctgtgtctctttctgcttgcacccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTCAGTGGCTATGAGGCAAAGgtgagttgaaaagctaaatcggttggttgccttctcaatgtaaagttccc Alignment from Spaln_nt2Genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG tacctaattccgtagaatttctgcctgtgtctctttctgcttgcacccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTCAGTGGCTATGAGGCAAAGgtgagttgaaaagctaaatcggttggttgccttctcaatgtaaagttccc Alignment from Pairagon GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG tacctaattccgtagaatttctgcctgtgtctctttctgcttgcacccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTCAGTGGCTATGAGGCAAAGgtgagttgaaaagctaaatcggttggttgccttctcaatgtaaagttccc Alignment from Exonerate_protein2genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG tacctaattccgtagaatttctgcctgtgtctctttctgcttgcacccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTCAGTGGCTATGAGGCAAAGgtgagttgaaaagctaaatcggttggttgccttctcaatgtaaagttccc Alignment from Exonerate_coding2genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAGGTGT tacctaattccgtagaatttctgcctgtgtctctttctgcttgcacccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTCAGTGGCTATGAGGCAAAG----gtgagttgaaaagctaaatcggttggttgccttctcaatgtaaagt Alignment from GeneWise GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG tacctaattccgtagaatttctgcctgtgtctctttctgcttgcacccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTCAGTGGCTATGAGGCAAAGgtgagttgaaaagctaaatcggttggttgccttctcaatgtaaagttccc #### Ankrd13d_ID468_5 --> 2 - 1 Original Alignment taCCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGg gagctcaattattttagtggtatcacgttacttgtttctgtgtctgccagtaCCTCTTGTGTCCAAGATATGCACAAGTGATGTGTACTGTGTGTGGAAACGAGGTGAGAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCACATGACATGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATggtgagtgttattcgtgcccccagaaaggaggaggagttttgtagaataag Alignment from CESAR taCCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGg gagctcaattattttagtggtatcacgttacttgtttctgtgtctgccagtaCCTCTTGTGTCCAAGATATGCACAAGTGATGTGTACTGTGTGTGGAAACGAGGTGAGAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCACATGACATGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATggtgagtgttattcgtgcccccagaaaggaggaggagttttgtagaataag Alignment from Spaln_aa2Genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagctcaattattttagtggtatcacgttacttgtttctgtgtctgccagTACCTCTTGTGTCCAAGATATGCACAAGTGATGTGTACTGTGTGTGGAAACGAGGTGAGAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCACATGACATGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtgagtgttattcgtgcccccagaaaggaggaggagttttgtagaataag Alignment from Spaln_nt2Genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagctcaattattttagtggtatcacgttacttgtttctgtgtctgccagTACCTCTTGTGTCCAAGATATGCACAAGTGATGTGTACTGTGTGTGGAAACGAGGTGAGAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCACATGACATGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtgagtgttattcgtgcccccagaaaggaggaggagttttgtagaataag Alignment from Pairagon TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagctcaattattttagtggtatcacgttacttgtttctgtgtctgccagTACCTCTTGTGTCCAAGATATGCACAAGTGATGTGTACTGTGTGTGGAAACGAGGTGAGAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCACATGACATGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtgagtgttattcgtgcccccagaaaggaggaggagttttgtagaataag Alignment from Exonerate_protein2genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagctcaattattttagtggtatcacgttacttgtttctgtgtctgccagTACCTCTTGTGTCCAAGATATGCACAAGTGATGTGTACTGTGTGTGGAAACGAGGTGAGAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCACATGACATGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtgagtgttattcgtgcccccagaaaggaggaggagttttgtagaataag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagctcaattattttagtggtatcacgttacttgtttctgtgtctgccagTACCTCTTGTGTCCAAGATATGCACAAGTGATGTGTACTGTGTGTGGAAACGAGGTGAGAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCACATGACATGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtgagtgttattcgtgcccccagaaaggaggaggagttttgtagaataag #### Ankrd1_ID7100_5 --> 0 - 0 Original Alignment TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tggagaacttattactaaagtgctattgagacttatgttttcttgtctagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTTCGAGATATGgtagagactgcattagaatgcaacaacatactatatgggaattggccctg Alignment from CESAR TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tggagaacttattactaaagtgctattgagacttatgttttcttgtctagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTTCGAGATATGgtagagactgcattagaatgcaacaacatactatatgggaattggccctg Alignment from Spaln_aa2Genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tggagaacttattactaaagtgctattgagacttatgttttcttgtctagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTTCGAGATATGgtagagactgcattagaatgcaacaacatactatatgggaattggccctg Alignment from Spaln_nt2Genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tggagaacttattactaaagtgctattgagacttatgttttcttgtctagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTTCGAGATATGgtagagactgcattagaatgcaacaacatactatatgggaattggccctg Alignment from Pairagon TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tggagaacttattactaaagtgctattgagacttatgttttcttgtctagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTTCGAGATATGgtagagactgcattagaatgcaacaacatactatatgggaattggccctg Alignment from Exonerate_protein2genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tggagaacttattactaaagtgctattgagacttatgttttcttgtctagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTTCGAGATATGgtagagactgcattagaatgcaacaacatactatatgggaattggccctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tggagaacttattactaaagtgctattgagacttatgttttcttgtctagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTTCGAGATATGgtagagactgcattagaatgcaacaacatactatatgggaattggccctg #### Ankrd2_ID8368_2 --> 0 - 0 Original Alignment AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtataccacttcaacctcttgatttagAAGCTTCGAAGATCTGCTCCTGGGAAACTATCAATGGACATGCTAGTCATTGAG------AAACATCTC------CAAAGGCCAGCTTTACAGGGGTTTGAAgtgggtgcattgtaagggagaaagggtatggactcaggcaaccacaaatg Alignment from CESAR AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtataccacttcaacctcttgatttagAAGCTTCGAAGATCTGCTCCTGGGAAACTATCAATGGACATGCTAGTCATT------GAGAAACATCTC------CAAAGGCCAGCTTTACAGGGGTTTGAAgtgggtgcattgtaagggagaaagggtatggactcaggcaaccacaaatg Alignment from Spaln_aa2Genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtataccacttcaacctcttgatttagAAGCTTCGAAGATCTGCTCCTGGGAAACTATCAATGGACATGCTAGTCATT------GAGAAACATCTC------CAAAGGCCAGCTTTACAGGGGTTTGAAgtgggtgcattgtaagggagaaagggtatggactcaggcaaccacaaatg Alignment from Spaln_nt2Genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtataccacttcaacctcttgatttagAAGCTTCGAAGATCTGCTCCTGGGAAACTATCAATGGACATGCTAGTCATTGAGAAA--------CATC----TCCAAAGGCCAGCTTTACAGGGGTTTGAAgtgggtgcattgtaagggagaaagggtatggactcaggcaaccacaaatg Alignment from Pairagon AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTA aaggatcaaaaatcctatcattagtataccacttcaacctcttgatttagAAGCTTCGAAGATCTGCTCCTGGGAAACTATCAATGGACATGCTAgtcattgagaaacatctccaaaggccagctttacaggggtttgaagtgggtgcattgtaagggagaaagggtatggactcaggcaaccacaaatg Alignment from Exonerate_protein2genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtataccacttcaacctcttgatttagAAGCTTCGAAGATCTGCTCCTGGGAAACTATCAATGGACATGCTAGTCATTGAGAAACAT------------CTCCAAAGGCCAGCTTTACAGGGGTTTGAAgtgggtgcattgtaagggagaaagggtatggactcaggcaaccacaaatg Alignment from Exonerate_coding2genome aaggatcaaaaatcctatcattagtataccacttcaacctcttgatttagaagcttcgaagatctgctcctgggaaactatcaatggacatgctagtcattgagaaacatctccaaaggccagctttacaggggtttgaagtgggtgcattgtaagggagaaagggtatggactcaggcaaccacaaatg Alignment from GeneWise AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtataccacttcaacctcttgatttagAAGCTTCGAAGATCTGCTCCTGGGAAACTATCAATGGACATGCTAGTCATTGAGAAACAT------------CTCCAAAGGCCAGCTTTACAGGGGTTTGAAgtgggtgcattgtaagggagaaagggtatggactcaggcaaccacaaatg #### Anxa1_ID4768_2 --> 0 - 1 Original Alignment CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAg agcagatgaagatatgatgatgatcataagttcgctcccattttcctcagCATGCTGTAAAATCATACAAAGGAGGCTCAGGTTCAGCAGTGAGCCCCTGCCCTTCTTTTAATGTATCCTCAGATGTTGCTGTCCTGCATAAGGCTATCATGGTTAAGggtgagtatatcccagtaataacactccattaacatatcttgccggaacaa Alignment from CESAR CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAg agcagatgaagatatgatgatgatcataagttcgctcccattttcctcagCATGCTGTAAAATCATACAAAGGAGGCTCAGGTTCAGCAGTGAGCCCCTGCCCTTCTTTTAATGTATCCTCAGATGTTGCTGTCCTGCATAAGGCTATCATGGTTAAGggtgagtatatcccagtaataacactccattaacatatcttgccggaacaa Alignment from Spaln_aa2Genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG agcagatgaagatatgatgatgatcataagttcgctcccattttcctcagCATGCTGTAAAATCATACAAAGGAGGCTCAGGTTCAGCAGTGAGCCCCTGCCCTTCTTTTAATGTATCCTCAGATGTTGCTGTCCTGCATAAGGCTATCATGGTTAAGGgtgagtatatcccagtaataacactccattaacatatcttgccggaacaa Alignment from Spaln_nt2Genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG agcagatgaagatatgatgatgatcataagttcgctcccattttcctcagCATGCTGTAAAATCATACAAAGGAGGCTCAGGTTCAGCAGTGAGCCCCTGCCCTTCTTTTAATGTATCCTCAGATGTTGCTGTCCTGCATAAGGCTATCATGGTTAAGGgtgagtatatcccagtaataacactccattaacatatcttgccggaacaa Alignment from Pairagon CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG agcagatgaagatatgatgatgatcataagttcgctcccattttcctcagCATGCTGTAAAATCATACAAAGGAGGCTCAGGTTCAGCAGTGAGCCCCTGCCCTTCTTTTAATGTATCCTCAGATGTTGCTGTCCTGCATAAGGCTATCATGGTTAAGGgtgagtatatcccagtaataacactccattaacatatcttgccggaacaa Alignment from Exonerate_protein2genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG agcagatgaagatatgatgatgatcataagttcgctcccattttcctcagCATGCTGTAAAATCATACAAAGGAGGCTCAGGTTCAGCAGTGAGCCCCTGCCCTTCTTTTAATGTATCCTCAGATGTTGCTGTCCTGCATAAGGCTATCATGGTTAAGGgtgagtatatcccagtaataacactccattaacatatcttgccggaacaa Alignment from Exonerate_coding2genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG agcagatgaagatatgatgatgatcataagttcgctcccattttcctcagCATGCTGTAAAATCATACAAAGGAGGCTCAGGTTCAGCAGTGAGCCCCTGCCCTTCTTTTAATGTATCCTCAGATGTTGCTGTCCTGCATAAGGCTATCATGGTTAAGGgtgagtatatcccagtaataacactccattaacatatcttgccggaacaa Alignment from GeneWise CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG agcagatgaagatatgatgatgatcataagttcgctcccattttcctcagCATGCTGTAAAATCATACAAAGGAGGCTCAGGTTCAGCAGTGAGCCCCTGCCCTTCTTTTAATGTATCCTCAGATGTTGCTGTCCTGCATAAGGCTATCATGGTTAAGGgtgagtatatcccagtaataacactccattaacatatcttgccggaacaa #### Apba1_ID5238_8 --> 0 - 0 Original Alignment GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgacaaatgggaatcatccagactcgagtccatgtggttgcctttcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCATATAGAAGCAAGTGACCTCCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGTAAAGATgtaagtgttgtttcacaggagcaggcagcagagctagacatccaacctac Alignment from CESAR GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgacaaatgggaatcatccagactcgagtccatgtggttgcctttcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCATATAGAAGCAAGTGACCTCCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGTAAAGATgtaagtgttgtttcacaggagcaggcagcagagctagacatccaacctac Alignment from Spaln_aa2Genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgacaaatgggaatcatccagactcgagtccatgtggttgcctttcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCATATAGAAGCAAGTGACCTCCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGTAAAGATgtaagtgttgtttcacaggagcaggcagcagagctagacatccaacctac Alignment from Spaln_nt2Genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgacaaatgggaatcatccagactcgagtccatgtggttgcctttcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCATATAGAAGCAAGTGACCTCCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGTAAAGATgtaagtgttgtttcacaggagcaggcagcagagctagacatccaacctac Alignment from Pairagon GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACAC----------------------------------------CCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgacaaatgggaatcatccagactcgagtccatgtggttgcctttcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCATATAGAAGCAAGTGACCTCCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCA----------------------------------------GAGAATTGTAAAGATgtaagtgttgtttcacaggagcaggcagcagagctagacatccaacctac Alignment from Exonerate_protein2genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgacaaatgggaatcatccagactcgagtccatgtggttgcctttcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCATATAGAAGCAAGTGACCTCCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGTAAAGATgtaagtgttgtttcacaggagcaggcagcagagctagacatccaacctac Alignment from Exonerate_coding2genome cttgacaaatgggaatcatccagactcgagtccatgtggttgcctttcaggccttgttaattgcacaatccataggacaggcattcagtgttgcataccaggaatatctcagggccaatggtattaacccagaagaccttagccatatagaagcaagtgacctcctcaacacaagagatatatataatgatggtttcctacaatcttccaaaccagagaattgtaaagatgtaagtgttgtttcacaggagcaggcagcagagctagacatccaacctac Alignment from GeneWise GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgacaaatgggaatcatccagactcgagtccatgtggttgcctttcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCATATAGAAGCAAGTGACCTCCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGTAAAGATgtaagtgttgtttcacaggagcaggcagcagagctagacatccaacctac #### Arl2_ID1475_4 --> 0 - 0 Original Alignment CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tgtctgtaggtagatgtggatagatcattggattctgactacactttcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAAGAGgtgagttaccaggggttagtgtattggatagtgacacaatatgaatatgc Alignment from CESAR CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tgtctgtaggtagatgtggatagatcattggattctgactacactttcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAAGAGgtgagttaccaggggttagtgtattggatagtgacacaatatgaatatgc Alignment from Spaln_aa2Genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tgtctgtaggtagatgtggatagatcattggattctgactacactttcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAAGAGgtgagttaccaggggttagtgtattggatagtgacacaatatgaatatgc Alignment from Spaln_nt2Genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tgtctgtaggtagatgtggatagatcattggattctgactacactttcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAAGAGgtgagttaccaggggttagtgtattggatagtgacacaatatgaatatgc Alignment from Pairagon CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tgtctgtaggtagatgtggatagatcattggattctgactacactttcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAAGAGgtgagttaccaggggttagtgtattggatagtgacacaatatgaatatgc Alignment from Exonerate_protein2genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tgtctgtaggtagatgtggatagatcattggattctgactacactttcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAAGAGgtgagttaccaggggttagtgtattggatagtgacacaatatgaatatgc Alignment from Exonerate_coding2genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tgtctgtaggtagatgtggatagatcattggattctgactacactttcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAAGAGgtgagttaccaggggttagtgtattggatagtgacacaatatgaatatgc Alignment from GeneWise CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tgtctgtaggtagatgtggatagatcattggattctgactacactttcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAAGAGgtgagttaccaggggttagtgtattggatagtgacacaatatgaatatgc #### Arl3_ID9951_5 --> 0 - 0 Original Alignment GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACG------GCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG taaccctctatattcccctttccctggtattgagatctgtgttttgccagGAACTGACGGAACTACTAGAGGAAGAAAAACTGAGCTGTGTGCCGGTACTCATGTTTGCAAACAAACAGGATCTGCTCACGCTCACAGCCGCTCCTGCCTGTGAGATAACC------------CTTCATATCATCTGGGACCGTGTTTGGCAAATCCAACCCTGTTCCGCTCTCATTGGCCAGGGAATCCAGgtgaggacacaagtaggggcaagtgaggcttgcacactactacctctact Alignment from CESAR GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACG------GCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG taaccctctatattcccctttccctggtattgagatctgtgttttgccagGAACTGACGGAACTACTAGAGGAAGAAAAACTGAGCTGTGTGCCGGTACTCATGTTTGCAAACAAACAGGATCTGCTCACGCTCACAGCCGCTCCTGCCTGTGAGATA------------ACCCTTCATATCATCTGGGACCGTGTTTGGCAAATCCAACCCTGTTCCGCTCTCATTGGCCAGGGAATCCAGgtgaggacacaagtaggggcaagtgaggcttgcacactactacctctact Alignment from Spaln_aa2Genome GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG taaccctctatattcccctttccctggtattgagatctgtgttttgccagGAACTGACGGAACTACTAGAGGAAGAAAAACTGAGCTGTGTGCCGGTACTCATGTTTGCAAACAAACAGGATCTGCTCACGCTCACAGCCGCTCCT------GCCTGTGAGATAACCCTTCATATCATCTGGGACCGTGTTTGGCAAATCCAACCCTGTTCCGCTCTCATTGGCCAGGGAATCCAGgtgaggacacaagtaggggcaagtgaggcttgcacactactacctctact Alignment from Spaln_nt2Genome GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG taaccctctatattcccctttccctggtattgagatctgtgttttgccagGAACTGACGGAACTACTAGAGGAAGAAAAACTGAGCTGTGTGCCGGTACTCATGTTTGCAAACAAACAGGATCTGCTCACG-----CTCA-CAGCCGCTCCTGCCTGTGAGATAACCCTTCATATCATCTGGGACCGTGTTTGGCAAATCCAACCCTGTTCCGCTCTCATTGGCCAGGGAATCCAGgtgaggacacaagtaggggcaagtgaggcttgcacactactacctctact Alignment from Pairagon GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACG------GCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG taaccctctatattcccctttccctggtattgagatctgtgttttgccagGAACTGACGGAACTACTAGAGGAAGAAAAACTGAGCTGTGTGCCGGTACTCATGTTTGCAAACAAACAGGATCTGCTCACGCTCACAGCCGCTCCTGCCTGTGAGA------------TAACCCTTCATATCATCTGGGACCGTGTTTGGCAAATCCAACCCTGTTCCGCTCTCATTGGCCAGGGAATCCAGgtgaggacacaagtaggggcaagtgaggcttgcacactactacctctact Alignment from Exonerate_protein2genome GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG taaccctctatattcccctttccctggtattgagatctgtgttttgccagGAACTGACGGAACTACTAGAGGAAGAAAAACTGAGCTGTGTGCCGGTACTCATGTTTGCAAACAAACAGGATCTGCTCACGCTCACAGCCGCTCCT------GCCTGTGAGATAACCCTTCATATCATCTGGGACCGTGTTTGGCAAATCCAACCCTGTTCCGCTCTCATTGGCCAGGGAATCCAGgtgaggacacaagtaggggcaagtgaggcttgcacactactacctctact Alignment from Exonerate_coding2genome GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG taaccctctatattcccctttccctggtattgagatctgtgttttgccagGAACTGACGGAACTACTAGAGGAAGAAAAACTGAGCTGTGTGCCGGTACTCATGTTTGCAAACAAACAGGATCTGCTCACGCTCACAGCCGCTCCT------GCCTGTGAGATAACCCTTCATATCATCTGGGACCGTGTTTGGCAAATCCAACCCTGTTCCGCTCTCATTGGCCAGGGAATCCAGgtgaggacacaagtaggggcaagtgaggcttgcacactactacctctact Alignment from GeneWise GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTG------CTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG taaccctctatattcccctttccctggtattgagatctgtgttttgccagGAACTGACGGAACTACTAGAGGAAGAAAAACTGAGCTGTGTGCCGGTACTCATGTTTGCAAACAAACAGGATCTGCTCACGCTCACAGCCGCTCCTGCCTGTGAGATAACC------------CTTCATATCATCTGGGACCGTGTTTGGCAAATCCAACCCTGTTCCGCTCTCATTGGCCAGGGAATCCAGgtgaggacacaagtaggggcaagtgaggcttgcacactactacctctact #### Asah2_ID6667_7 --> 1 - 0 Original Alignment cTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tgaaatagactaatttcagaggcccactccgctgcccgtgttgcctccagcTGGTTTGCGATCCCTCCCGTAAGCATGAACAATAGCAACCACTTTGTGAACACTGATAACAAGGGGTATGCTGCATACCTCTTTGAGCAAGAAAAGAACAAGGGCTATTTACCTGGAAAAgtaagatttaacactattgtttatttggtcagcctgtgttcagtatacta Alignment from CESAR cTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tgaaatagactaatttcagaggcccactccgctgcccgtgttgcctccagcTGGTTTGCGATCCCTCCCGTAAGCATGAACAATAGCAACCACTTTGTGAACACTGATAACAAGGGGTATGCTGCATACCTCTTTGAGCAAGAAAAGAACAAGGGCTATTTACCTGGAAAAgtaagatttaacactattgtttatttggtcagcctgtgttcagtatacta Alignment from Spaln_aa2Genome CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tgaaatagactaatttcagaggcccactccgctgcccgtgttgcctccagCTGGTTTGCGATCCCTCCCGTAAGCATGAACAATAGCAACCACTTTGTGAACACTGATAACAAGGGGTATGCTGCATACCTCTTTGAGCAAGAAAAGAACAAGGGCTATTTACCTGGAAAAgtaagatttaacactattgtttatttggtcagcctgtgttcagtatacta Alignment from Spaln_nt2Genome CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tgaaatagactaatttcagaggcccactccgctgcccgtgttgcctccagCTGGTTTGCGATCCCTCCCGTAAGCATGAACAATAGCAACCACTTTGTGAACACTGATAACAAGGGGTATGCTGCATACCTCTTTGAGCAAGAAAAGAACAAGGGCTATTTACCTGGAAAAgtaagatttaacactattgtttatttggtcagcctgtgttcagtatacta Alignment from Pairagon CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tgaaatagactaatttcagaggcccactccgctgcccgtgttgcctccagCTGGTTTGCGATCCCTCCCGTAAGCATGAACAATAGCAACCACTTTGTGAACACTGATAACAAGGGGTATGCTGCATACCTCTTTGAGCAAGAAAAGAACAAGGGCTATTTACCTGGAAAAgtaagatttaacactattgtttatttggtcagcctgtgttcagtatacta Alignment from Exonerate_protein2genome CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tgaaatagactaatttcagaggcccactccgctgcccgtgttgcctccagCTGGTTTGCGATCCCTCCCGTAAGCATGAACAATAGCAACCACTTTGTGAACACTGATAACAAGGGGTATGCTGCATACCTCTTTGAGCAAGAAAAGAACAAGGGCTATTTACCTGGAAAAgtaagatttaacactattgtttatttggtcagcctgtgttcagtatacta Alignment from Exonerate_coding2genome CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tgaaatagactaatttcagaggcccactccgctgcccgtgttgcctccagCTGGTTTGCGATCCCTCCCGTAAGCATGAACAATAGCAACCACTTTGTGAACACTGATAACAAGGGGTATGCTGCATACCTCTTTGAGCAAGAAAAGAACAAGGGCTATTTACCTGGAAAAgtaagatttaacactattgtttatttggtcagcctgtgttcagtatacta Alignment from GeneWise CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tgaaatagactaatttcagaggcccactccgctgcccgtgttgcctccagCTGGTTTGCGATCCCTCCCGTAAGCATGAACAATAGCAACCACTTTGTGAACACTGATAACAAGGGGTATGCTGCATACCTCTTTGAGCAAGAAAAGAACAAGGGCTATTTACCTGGAAAAgtaagatttaacactattgtttatttggtcagcctgtgttcagtatacta #### Atad1_ID6728_2 --> 0 - 0 Original Alignment GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aagtgcaacataagagaaaacttacaacgcgagtggctctgctgttttagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGCCCCTCATAATATGCATgtaatgttccatgggctttcccttctgaagagttgggcaaataccaaatt Alignment from CESAR GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aagtgcaacataagagaaaacttacaacgcgagtggctctgctgttttagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGCCCCTCATAATATGCATgtaatgttccatgggctttcccttctgaagagttgggcaaataccaaatt Alignment from Spaln_aa2Genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aagtgcaacataagagaaaacttacaacgcgagtggctctgctgttttagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGCCCCTCATAATATGCATgtaatgttccatgggctttcccttctgaagagttgggcaaataccaaatt Alignment from Spaln_nt2Genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aagtgcaacataagagaaaacttacaacgcgagtggctctgctgttttagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGCCCCTCATAATATGCATgtaatgttccatgggctttcccttctgaagagttgggcaaataccaaatt Alignment from Pairagon GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aagtgcaacataagagaaaacttacaacgcgagtggctctgctgttttagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGCCCCTCATAATATGCATgtaatgttccatgggctttcccttctgaagagttgggcaaataccaaatt Alignment from Exonerate_protein2genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aagtgcaacataagagaaaacttacaacgcgagtggctctgctgttttagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGCCCCTCATAATATGCATgtaatgttccatgggctttcccttctgaagagttgggcaaataccaaatt Alignment from Exonerate_coding2genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aagtgcaacataagagaaaacttacaacgcgagtggctctgctgttttagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGCCCCTCATAATATGCATgtaatgttccatgggctttcccttctgaagagttgggcaaataccaaatt Alignment from GeneWise GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aagtgcaacataagagaaaacttacaacgcgagtggctctgctgttttagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGCCCCTCATAATATGCATgtaatgttccatgggctttcccttctgaagagttgggcaaataccaaatt #### Atl3_ID2163_5 --> 0 - 0 Original Alignment ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatagtttttagcatagtaatctctttacatcgtagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagtggtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from CESAR ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatagtttttagcatagtaatctctttacatcgtagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagtggtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from Spaln_aa2Genome ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatagtttttagcatagtaatctctttacatcgtagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagtggtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from Spaln_nt2Genome ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatagtttttagcatagtaatctctttacatcgtagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagtggtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from Pairagon ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatagtttttagcatagtaatctctttacatcgtagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagtggtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from Exonerate_protein2genome ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatagtttttagcatagtaatctctttacatcgtagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagtggtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatagtttttagcatagtaatctctttacatcgtagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagtggtgattggaatgcaagagccagagatttttgtgtgtactagct #### Atl3_ID2166_8 --> 0 - 1 Original Alignment GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAg tttctttctccctacctgaaaaacccttcctgtattcctatccccaacagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGggtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from CESAR GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAg tttctttctccctacctgaaaaacccttcctgtattcctatccccaacagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGggtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from Spaln_aa2Genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tttctttctccctacctgaaaaacccttcctgtattcctatccccaacagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from Spaln_nt2Genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tttctttctccctacctgaaaaacccttcctgtattcctatccccaacagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from Pairagon GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tttctttctccctacctgaaaaacccttcctgtattcctatccccaacagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from Exonerate_protein2genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tttctttctccctacctgaaaaacccttcctgtattcctatccccaacagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tttctttctccctacctgaaaaacccttcctgtattcctatccccaacagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtaggtacagtattggattctgcatattagacacactactggtgattttt #### Atl3_ID2167_9 --> 2 - 0 Original Alignment atATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaatcatggagttattgtattcaatattcttgtccctgtgctttcagatATTGTTAGTGATCTTGAAGAGCAATTACAAGCCTTAATACCTTATGTCTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGACCACTTGCCATGGATTATTGGAGCATTTTAAAgtaagtttttcagatattcatgttatacctatgactatcccagcttgtca Alignment from CESAR atATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaatcatggagttattgtattcaatattcttgtccctgtgctttcagatATTGTTAGTGATCTTGAAGAGCAATTACAAGCCTTAATACCTTATGTCTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGACCACTTGCCATGGATTATTGGAGCATTTTAAAgtaagtttttcagatattcatgttatacctatgactatcccagcttgtca Alignment from Spaln_aa2Genome ATATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaatcatggagttattgtattcaatattcttgtccctgtgctttcagATATTGTTAGTGATCTTGAAGAGCAATTACAAGCCTTAATACCTTATGTCTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGACCACTTGCCATGGATTATTGGAGCATTTTAAAgtaagtttttcagatattcatgttatacctatgactatcccagcttgtca Alignment from Spaln_nt2Genome ATATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaatcatggagttattgtattcaatattcttgtccctgtgctttcagATATTGTTAGTGATCTTGAAGAGCAATTACAAGCCTTAATACCTTATGTCTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGACCACTTGCCATGGATTATTGGAGCATTTTAAAgtaagtttttcagatattcatgttatacctatgactatcccagcttgtca Alignment from Pairagon ATATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaatcatggagttattgtattcaatattcttgtccctgtgctttcagATATTGTTAGTGATCTTGAAGAGCAATTACAAGCCTTAATACCTTATGTCTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGACCACTTGCCATGGATTATTGGAGCATTTTAAAgtaagtttttcagatattcatgttatacctatgactatcccagcttgtca Alignment from Exonerate_protein2genome ATATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaatcatggagttattgtattcaatattcttgtccctgtgctttcagATATTGTTAGTGATCTTGAAGAGCAATTACAAGCCTTAATACCTTATGTCTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGACCACTTGCCATGGATTATTGGAGCATTTTAAAgtaagtttttcagatattcatgttatacctatgactatcccagcttgtca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaatcatggagttattgtattcaatattcttgtccctgtgctttcagATATTGTTAGTGATCTTGAAGAGCAATTACAAGCCTTAATACCTTATGTCTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGACCACTTGCCATGGATTATTGGAGCATTTTAAAgtaagtttttcagatattcatgttatacctatgactatcccagcttgtca #### Atl3_ID2172_12 --> 0 - 0 Original Alignment ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCT---CTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG ttacttgggcagcacaagactttacaatcgctgctcttaactctttacagATTTGTGGAGGAGAGAAACCTTGCTTGCCCCCAGATATCTCTCAGGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAA---ATGGGTGGTGAGGATTACAGCTTCTGCTACCGGCAAGAACAAGAGGAGGAAATAAAACAACTATACAAAAATTTCTGCCAGCGTAATGGGACCAAGAATGTATTTAGCAGCTTCCGGACCCCAGCAGTTCTGTTTGCGACCATTGCCATATTGTACATAGCTGCAGGCTTTGCAGGCTACATAGGACTTGAGGTTGTCGCTCAATTATTCAACTGCAAGGTGAAATTGCTTTTAATAGCACTCCTCACATGTGGATACATTAAGTACTCTGGGCAATATTGTGAGCTAGGTGCCACTATTGACTCAGGTGCAGCTTATGTGTTAAAACAAgtgagaactgaccaaaactgggttggggcctaagccaagaccatggatat Alignment from CESAR ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCT---CTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG ttacttgggcagcacaagactttacaatcgctgctcttaactctttacagATTTGTGGAGGAGAGAAACCTTGCTTGCCCCCAGATATCTCTCAGGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAA---ATGGGTGGTGAGGATTACAGCTTCTGCTACCGGCAAGAACAAGAGGAGGAAATAAAACAACTATACAAAAATTTCTGCCAGCGTAATGGGACCAAGAATGTATTTAGCAGCTTCCGGACCCCAGCAGTTCTGTTTGCGACCATTGCCATATTGTACATAGCTGCAGGCTTTGCAGGCTACATAGGACTTGAGGTTGTCGCTCAATTATTCAACTGCAAGGTGAAATTGCTTTTAATAGCACTCCTCACATGTGGATACATTAAGTACTCTGGGCAATATTGTGAGCTAGGTGCCACTATTGACTCAGGTGCAGCTTATGTGTTAAAACAAgtgagaactgaccaaaactgggttggggcctaagccaagaccatggatat Alignment from Spaln_aa2Genome ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCTCTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG ttacttgggcagcacaagactttacaatcgctgctcttaactctttacagATTTGTGGAGGAGAGAAACCTTGCTTGCCCCCAGATATCTCTCAGGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAAATGGGTGGTGAGGATTACAGCTTCTGCTACCGGCAAGAACAAGAGGAGGAAATAAAACAACTATACAAAAATTTCTGCCAGCGTAATGGGACCAAGAATGTATTTAGCAGCTTCCGGACCCCAGCAGTTCTGTTTGCGACCATTGCCATATTGTACATAGCTGCAGGCTTTGCAGGCTACATAGGACTTGAGGTTGTCGCTCAATTATTCAACTGCAAGGTGAAATTGCTTTTAATAGCACTCCTCACATGTGGATACATTAAGTACTCTGGGCAATATTGTGAGCTAGGTGCCACTATTGACTCAGGTGCAGCTTATGTGTTAAAACAAgtgagaactgaccaaaactgggttggggcctaagccaagaccatggatat Alignment from Spaln_nt2Genome ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCTC---TGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG ttacttgggcagcacaagactttacaatcgctgctcttaactctttacagATTTGTGGAGGAGAGAAACCTTGCTTGCCCCCAGATATCTCTCAGGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAA---ATGGGTGGTGAGGATTACAGCTTCTGCTACCGGCAAGAACAAGAGGAGGAAATAAAACAACTATACAAAAATTTCTGCCAGCGTAATGGGACCAAGAATGTATTTAGCAGCTTCCGGACCCCAGCAGTTCTGTTTGCGACCATTGCCATATTGTACATAGCTGCAGGCTTTGCAGGCTACATAGGACTTGAGGTTGTCGCTCAATTATTCAACTGCAAGGTGAAATTGCTTTTAATAGCACTCCTCACATGTGGATACATTAAGTACTCTGGGCAATATTGTGAGCTAGGTGCCACTATTGACTCAGGTGCAGCTTATGTGTTAAAACAAgtgagaactgaccaaaactgggttggggcctaagccaagaccatggatat Alignment from Pairagon ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCT---CTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG ttacttgggcagcacaagactttacaatcgctgctcttaactctttacagATTTGTGGAGGAGAGAAACCTTGCTTGCCCCCAGATATCTCTCAGGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAA---ATGGGTGGTGAGGATTACAGCTTCTGCTACCGGCAAGAACAAGAGGAGGAAATAAAACAACTATACAAAAATTTCTGCCAGCGTAATGGGACCAAGAATGTATTTAGCAGCTTCCGGACCCCAGCAGTTCTGTTTGCGACCATTGCCATATTGTACATAGCTGCAGGCTTTGCAGGCTACATAGGACTTGAGGTTGTCGCTCAATTATTCAACTGCAAGGTGAAATTGCTTTTAATAGCACTCCTCACATGTGGATACATTAAGTACTCTGGGCAATATTGTGAGCTAGGTGCCACTATTGACTCAGGTGCAGCTTATGTGTTAAAACAAgtgagaactgaccaaaactgggttggggcctaagccaagaccatggatat Alignment from Exonerate_protein2genome ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTT---GCTCTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG ttacttgggcagcacaagactttacaatcgctgctcttaactctttacagATTTGTGGAGGAGAGAAACCTTGCTTGCCCCCAGATATCTCTCAGGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATC---AAAATGGGTGGTGAGGATTACAGCTTCTGCTACCGGCAAGAACAAGAGGAGGAAATAAAACAACTATACAAAAATTTCTGCCAGCGTAATGGGACCAAGAATGTATTTAGCAGCTTCCGGACCCCAGCAGTTCTGTTTGCGACCATTGCCATATTGTACATAGCTGCAGGCTTTGCAGGCTACATAGGACTTGAGGTTGTCGCTCAATTATTCAACTGCAAGGTGAAATTGCTTTTAATAGCACTCCTCACATGTGGATACATTAAGTACTCTGGGCAATATTGTGAGCTAGGTGCCACTATTGACTCAGGTGCAGCTTATGTGTTAAAACAAgtgagaactgaccaaaactgggttggggcctaagccaagaccatggatat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCT---CTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG ttacttgggcagcacaagactttacaatcgctgctcttaactctttacagATTTGTGGAGGAGAGAAACCTTGCTTGCCCCCAGATATCTCTCAGGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATC---AAAATGGGTGGTGAGGATTACAGCTTCTGCTACCGGCAAGAACAAGAGGAGGAAATAAAACAACTATACAAAAATTTCTGCCAGCGTAATGGGACCAAGAATGTATTTAGCAGCTTCCGGACCCCAGCAGTTCTGTTTGCGACCATTGCCATATTGTACATAGCTGCAGGCTTTGCAGGCTACATAGGACTTGAGGTTGTCGCTCAATTATTCAACTGCAAGGTGAAATTGCTTTTAATAGCACTCCTCACATGTGGATACATTAAGTACTCTGGGCAATATTGTGAGCTAGGTGCCACTATTGACTCAGGTGCAGCTTATGTGTTAAAACAAgtgagaactgaccaaaactgggttggggcctaagccaagaccatggatat #### Atrnl1_ID12431_4 --> 1 - 2 Original Alignment tGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATtc gagcaaatttttgcaacctactcatctgatctttgtttacttggttttagtGGCCTGGTGGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAAGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTGAACATTTTTTATtcgtatgtttacacattagattacacattagaaaagcagatgtaagttaggg Alignment from CESAR tGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATtc gagcaaatttttgcaacctactcatctgatctttgtttacttggttttagtGGCCTGGTGGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAAGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTGAACATTTTTTATtcgtatgtttacacattagattacacattagaaaagcagatgtaagttaggg Alignment from Spaln_aa2Genome TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC gagcaaatttttgcaacctactcatctgatctttgtttacttggttttagTGGCCTGGTGGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAAGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTGAACATTTTTTATTCgtatgtttacacattagattacacattagaaaagcagatgtaagttaggg Alignment from Spaln_nt2Genome TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC gagcaaatttttgcaacctactcatctgatctttgtttacttggttttagTGGCCTGGTGGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAAGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTGAACATTTTTTATTCgtatgtttacacattagattacacattagaaaagcagatgtaagttaggg Alignment from Pairagon TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC gagcaaatttttgcaacctactcatctgatctttgtttacttggttttagTGGCCTGGTGGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAAGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTGAACATTTTTTATTCgtatgtttacacattagattacacattagaaaagcagatgtaagttaggg Alignment from Exonerate_protein2genome TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC gagcaaatttttgcaacctactcatctgatctttgtttacttggttttagTGGCCTGGTGGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAAGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTGAACATTTTTTATTCgtatgtttacacattagattacacattagaaaagcagatgtaagttaggg Alignment from Exonerate_coding2genome TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC gagcaaatttttgcaacctactcatctgatctttgtttacttggttttagTGGCCTGGTGGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAAGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTGAACATTTTTTATTCgtatgtttacacattagattacacattagaaaagcagatgtaagttaggg Alignment from GeneWise TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC gagcaaatttttgcaacctactcatctgatctttgtttacttggttttagTGGCCTGGTGGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAAGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTGAACATTTTTTATTCgtatgtttacacattagattacacattagaaaagcagatgtaagttaggg #### Atrnl1_ID12432_5 --> 1 - 1 Original Alignment gATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAg aggtgatgcatgtataaatacgagaaagagcacttttcttctccccacaggATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGCACA---AGTGTCTCTGTTGCAACTCAGGTATACTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAggtgagtccttaacatggaatatcaggtgtgctgcaatgccatcacaataa Alignment from CESAR gATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAg aggtgatgcatgtataaatacgagaaagagcacttttcttctccccacaggATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGCACA---AGTGTCTCTGTTGCAACTCAGGTATACTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAggtgagtccttaacatggaatatcaggtgtgctgcaatgccatcacaataa Alignment from Spaln_aa2Genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG aggtgatgcatgtataaatacgagaaagagcacttttcttctccccacagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGC---ACAAGTGTCTCTGTTGCAACTCAGGTATACTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatatcaggtgtgctgcaatgccatcacaataa Alignment from Spaln_nt2Genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG aggtgatgcatgtataaatacgagaaagagcacttttcttctccccacagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGC---ACAAGTGTCTCTGTTGCAACTCAGGTATACTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatatcaggtgtgctgcaatgccatcacaataa Alignment from Pairagon GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG aggtgatgcatgtataaatacgagaaagagcacttttcttctccccacagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGCACA---AGTGTCTCTGTTGCAACTCAGGTATACTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatatcaggtgtgctgcaatgccatcacaataa Alignment from Exonerate_protein2genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG aggtgatgcatgtataaatacgagaaagagcacttttcttctccccacagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGC---ACAAGTGTCTCTGTTGCAACTCAGGTATACTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatatcaggtgtgctgcaatgccatcacaataa Alignment from Exonerate_coding2genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG aggtgatgcatgtataaatacgagaaagagcacttttcttctccccacagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGC---ACAAGTGTCTCTGTTGCAACTCAGGTATACTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatatcaggtgtgctgcaatgccatcacaataa Alignment from GeneWise GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG aggtgatgcatgtataaatacgagaaagagcacttttcttctccccacagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGCACA---AGTGTCTCTGTTGCAACTCAGGTATACTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatatcaggtgtgctgcaatgccatcacaataa #### Atrnl1_ID12441_13 --> 2 - 0 Original Alignment ctGCTACCGATGACAGATGTTACAGATATGCTGACTGTGCCAGCTGCACAGCCAACACGAACGGGTGCCAGTGGTGTGACGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGCACG aacttattggcagttgagccagtctcagtttttttattcttacccaccagctGCTGCAGATGACAGATGTTACATATACGCTGACTGTGCCAGCTGCACAGCCAACATGAATGCATGCCAGTGGTGTGATGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGTACAgtaagtgtgtaactgctagtgaatcacccttcgttttatgcacctgaccg Alignment from CESAR ctGCTACCGATGACAGATGTTACAGATATGCTGACTGTGCCAGCTGCACAGCCAACACGAACGGGTGCCAGTGGTGTGACGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGCACG aacttattggcagttgagccagtctcagtttttttattcttacccaccagctGCTGCAGATGACAGATGTTACATATACGCTGACTGTGCCAGCTGCACAGCCAACATGAATGCATGCCAGTGGTGTGATGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGTACAgtaagtgtgtaactgctagtgaatcacccttcgttttatgcacctgaccg Alignment from Spaln_aa2Genome CTGCTACCGATGACAGATGTTACAGATATGCTGACTGTGCCAGCTGCACAGCCAACACGAACGGGTGCCAGTGGTGTGACGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGCACG aacttattggcagttgagccagtctcagtttttttattcttacccaccagCTGCTGCAGATGACAGATGTTACATATACGCTGACTGTGCCAGCTGCACAGCCAACATGAATGCATGCCAGTGGTGTGATGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGTACAgtaagtgtgtaactgctagtgaatcacccttcgttttatgcacctgaccg Alignment from Spaln_nt2Genome CTGCTACCGATGACAGATGTTACAGATATGCTGACTGTGCCAGCTGCACAGCCAACACGAACGGGTGCCAGTGGTGTGACGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGCACG aacttattggcagttgagccagtctcagtttttttattcttacccaccagCTGCTGCAGATGACAGATGTTACATATACGCTGACTGTGCCAGCTGCACAGCCAACATGAATGCATGCCAGTGGTGTGATGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGTACAgtaagtgtgtaactgctagtgaatcacccttcgttttatgcacctgaccg Alignment from Pairagon CTGCTACCGATGACAGATGTTACAGATATGCTGACTGTGCCAGCTGCACAGCCAACACGAACGGGTGCCAGTGGTGTGACGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGCACG aacttattggcagttgagccagtctcagtttttttattcttacccaccagCTGCTGCAGATGACAGATGTTACATATACGCTGACTGTGCCAGCTGCACAGCCAACATGAATGCATGCCAGTGGTGTGATGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGTACAgtaagtgtgtaactgctagtgaatcacccttcgttttatgcacctgaccg Alignment from Exonerate_protein2genome CTGCTACCGATGACAGATGTTACAGATATGCTGACTGTGCCAGCTGCACAGCCAACACGAACGGGTGCCAGTGGTGTGACGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGCACG aacttattggcagttgagccagtctcagtttttttattcttacccaccagCTGCTGCAGATGACAGATGTTACATATACGCTGACTGTGCCAGCTGCACAGCCAACATGAATGCATGCCAGTGGTGTGATGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGTACAgtaagtgtgtaactgctagtgaatcacccttcgttttatgcacctgaccg Alignment from Exonerate_coding2genome CTGCTACCGATGACAGATGTTACAGATATGCTGACTGTGCCAGCTGCACAGCCAACACGAACGGGTGCCAGTGGTGTGACGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGCACG aacttattggcagttgagccagtctcagtttttttattcttacccaccagCTGCTGCAGATGACAGATGTTACATATACGCTGACTGTGCCAGCTGCACAGCCAACATGAATGCATGCCAGTGGTGTGATGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGTACAgtaagtgtgtaactgctagtgaatcacccttcgttttatgcacctgaccg Alignment from GeneWise CTGCTACCGATGACAGATGTTACAGATATGCTGACTGTGCCAGCTGCACAGCCAACACGAACGGGTGCCAGTGGTGTGACGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGCACG aacttattggcagttgagccagtctcagtttttttattcttacccaccagCTGCTGCAGATGACAGATGTTACATATACGCTGACTGTGCCAGCTGCACAGCCAACATGAATGCATGCCAGTGGTGTGATGACAAGAAATGCATCTCAGCCAGCAGCAACTGCAGTACAgtaagtgtgtaactgctagtgaatcacccttcgttttatgcacctgaccg #### Atrnl1_ID12446_16 --> 0 - 1 Original Alignment AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAg agagctagtttgtctggtaaccttgttatattctgtgttttctaaaccagAAAGTGGCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGACTCCTTTTACGAATACAAGTCTGCAGTGGGTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACCTAGAAAGAGCAGCAGTGGCTGGGTTAAAGACAAACCCTTGCACATCCATGGCAGATGGTCTTGTCTGTGAAAAGCCTGTAggcaagttttcacaccagcacccacagttctgcagtcacctctgtggtcct Alignment from CESAR AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAg agagctagtttgtctggtaaccttgttatattctgtgttttctaaaccagAAAGTGGCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGACTCCTTTTACGAATACAAGTCTGCAGTGGGTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACCTAGAAAGAGCAGCAGTGGCTGGGTTAAAGACAAACCCTTGCACATCCATGGCAGATGGTCTTGTCTGTGAAAAGCCTGTAggcaagttttcacaccagcacccacagttctgcagtcacctctgtggtcct Alignment from Spaln_aa2Genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG agagctagtttgtctggtaaccttgttatattctgtgttttctaaaccagAAAGTGGCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGACTCCTTTTACGAATACAAGTCTGCAGTGGGTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACCTAGAAAGAGCAGCAGTGGCTGGGTTAAAGACAAACCCTTGCACATCCATGGCAGATGGTCTTGTCTGTGAAAAGCCTGTAGgcaagttttcacaccagcacccacagttctgcagtcacctctgtggtcct Alignment from Spaln_nt2Genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG agagctagtttgtctggtaaccttgttatattctgtgttttctaaaccagAAAGTGGCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGACTCCTTTTACGAATACAAGTCTGCAGTGGGTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACCTAGAAAGAGCAGCAGTGGCTGGGTTAAAGACAAACCCTTGCACATCCATGGCAGATGGTCTTGTCTGTGAAAAGCCTGTAGgcaagttttcacaccagcacccacagttctgcagtcacctctgtggtcct Alignment from Pairagon AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG agagctagtttgtctggtaaccttgttatattctgtgttttctaaaccagAAAGTGGCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGACTCCTTTTACGAATACAAGTCTGCAGTGGGTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACCTAGAAAGAGCAGCAGTGGCTGGGTTAAAGACAAACCCTTGCACATCCATGGCAGATGGTCTTGTCTGTGAAAAGCCTGTAGgcaagttttcacaccagcacccacagttctgcagtcacctctgtggtcct Alignment from Exonerate_protein2genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG agagctagtttgtctggtaaccttgttatattctgtgttttctaaaccagAAAGTGGCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGACTCCTTTTACGAATACAAGTCTGCAGTGGGTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACCTAGAAAGAGCAGCAGTGGCTGGGTTAAAGACAAACCCTTGCACATCCATGGCAGATGGTCTTGTCTGTGAAAAGCCTGTAGgcaagttttcacaccagcacccacagttctgcagtcacctctgtggtcct Alignment from Exonerate_coding2genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTA agagctagtttgtctggtaaccttgttatattctgtgttttctaaaccagAAAGTGGCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGACTCCTTTTACGAATACAAGTCTGCAGTGGGTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACCTAGAAAGAGCAGCAGTGGCTGGGTTAAAGACAAACCCTTGCACATCCATGGCAGATGGTCTTGTCTGTGAAAAGCCTGTAggcaagttttcacaccagcacccacagttctgcagtcacctctgtggtcct Alignment from GeneWise AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAGTAAG agagctagtttgtctggtaaccttgttatattctgtgttttctaaaccagAAAGTGGCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGACTCCTTTTACGAATACAAGTCTGCAGTGGGTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACCTAGAAAGAGCAGCAGTGGCTGGGTTAAAGACAAACCCTTGCACATCCATGGCAGATGGTCTTGTCTGTGAAAAGCCTGTAGGCAAgttttcacaccagcacccacagttctgcagtcacctctgtggtcct #### Atrnl1_ID12454_21 --> 1 - 1 Original Alignment aTGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATt gtacctagtcttcatattcaattctccactgcttcctgtcctccctgcagaTTTGATTCCGAGAATCACTATGTAGGTAATCCACTCAGGGGGACATGCTATtgtgggcctagcttttccatctactgttttttgaaaaattgtgttacctgt Alignment from CESAR aTGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATt gtacctagtcttcatattcaattctccactgcttcctgtcctccctgcagaTTTGATTCCGAGAATCACTATGTAGGTAATCCACTCAGGGGGACATGCTATtgtgggcctagcttttccatctactgttttttgaaaaattgtgttacctgt Alignment from Spaln_aa2Genome ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT gtacctagtcttcatattcaattctccactgcttcctgtcctccctgcagATTTGATTCCGAGAATCACTATGTAGGTAATCCACTCAGGGGGACATGCTATTgtgggcctagcttttccatctactgttttttgaaaaattgtgttacctgt Alignment from Spaln_nt2Genome ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT gtacctagtcttcatattcaattctccactgcttcctgtcctccctgcagATTTGATTCCGAGAATCACTATGTAGGTAATCCACTCAGGGGGACATGCTATTgtgggcctagcttttccatctactgttttttgaaaaattgtgttacctgt Alignment from Pairagon ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT gtacctagtcttcatattcaattctccactgcttcctgtcctccctgcagATTTGATTCCGAGAATCACTATGTAGGTAATCCACTCAGGGGGACATGCTATTgtgggcctagcttttccatctactgttttttgaaaaattgtgttacctgt Alignment from Exonerate_protein2genome ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT gtacctagtcttcatattcaattctccactgcttcctgtcctccctgcagATTTGATTCCGAGAATCACTATGTAGGTAATCCACTCAGGGGGACATGCTATTgtgggcctagcttttccatctactgttttttgaaaaattgtgttacctgt Alignment from Exonerate_coding2genome gtacctagtcttcatattcaattctccactgcttcctgtcctccctgcagatttgattccgagaatcactatgtaggtaatccactcagggggacatgctattgtgggcctagcttttccatctactgttttttgaaaaattgtgttacctgt Alignment from GeneWise ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT gtacctagtcttcatattcaattctccactgcttcctgtcctccctgcagATTTGATTCCGAGAATCACTATGTAGGTAATCCACTCAGGGGGACATGCTATTgtgggcctagcttttccatctactgttttttgaaaaattgtgttacctgt #### Atrnl1_ID12455_22 --> 2 - 0 Original Alignment acAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tatttcattatatgctgatctactgacaccttttctttctttttttaaagatACCCTTCTGAATGACTACCAATTCTCTTTCAGCTTGCTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtatgggagtggttctgatgtgtaacctcataacctagctaacttctggg Alignment from CESAR acAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tatttcattatatgctgatctactgacaccttttctttctttttttaaagatACCCTTCTGAATGACTACCAATTCTCTTTCAGCTTGCTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtatgggagtggttctgatgtgtaacctcataacctagctaacttctggg Alignment from Spaln_aa2Genome ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tatttcattatatgctgatctactgacaccttttctttctttttttaaagATACCCTTCTGAATGACTACCAATTCTCTTTCAGCTTGCTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtatgggagtggttctgatgtgtaacctcataacctagctaacttctggg Alignment from Spaln_nt2Genome ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tatttcattatatgctgatctactgacaccttttctttctttttttaaagATACCCTTCTGAATGACTACCAATTCTCTTTCAGCTTGCTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtatgggagtggttctgatgtgtaacctcataacctagctaacttctggg Alignment from Pairagon ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tatttcattatatgctgatctactgacaccttttctttctttttttaaagATACCCTTCTGAATGACTACCAATTCTCTTTCAGCTTGCTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtatgggagtggttctgatgtgtaacctcataacctagctaacttctggg Alignment from Exonerate_protein2genome ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tatttcattatatgctgatctactgacaccttttctttctttttttaaagATACCCTTCTGAATGACTACCAATTCTCTTTCAGCTTGCTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtatgggagtggttctgatgtgtaacctcataacctagctaacttctggg Alignment from Exonerate_coding2genome tatttcattatatgctgatctactgacaccttttctttctttttttaaagatacccttctgaatgactaccaattctctttcagcttgctccaggaggatgaccggcatcccactgctaccaatttcatagccaaccctgagcaggtatgggagtggttctgatgtgtaacctcataacctagctaacttctggg Alignment from GeneWise ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tatttcattatatgctgatctactgacaccttttctttctttttttaaagATACCCTTCTGAATGACTACCAATTCTCTTTCAGCTTGCTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtatgggagtggttctgatgtgtaacctcataacctagctaacttctggg #### Atrnl1_ID12456_23 --> 0 - 1 Original Alignment TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAg gaagaggcctaagccacattcatatctttttcttttctttctttcttcagTCAAACAAAAACTTAGATATCTCCAACAATGCATCAAAC---ATTAATTTTAATGACACA---GCAGTTGGTTTAACAggtaagcatataattctcgttactagctccagtgtctttgctcattcaaca Alignment from CESAR TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAg gaagaggcctaagccacattcatatctttttcttttctttctttcttcagTCAAACAAAAACTTAGATATCTCCAACAATGCATCA---AACATTAATTTTAATGACACA---GCAGTTGGTTTAACAggtaagcatataattctcgttactagctccagtgtctttgctcattcaaca Alignment from Spaln_aa2Genome TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAG gaagaggcctaagccacattcatatctttttcttttctttctttcttcagTCAAACAAAAACTTAGATATCTCCAACAATGCATCA---AACATTAATTTTAATGACACA---GCAGTTGGTTTAACAGgtaagcatataattctcgttactagctccagtgtctttgctcattcaaca Alignment from Spaln_nt2Genome TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAG gaagaggcctaagccacattcatatctttttcttttctttctttcttcagTCAAACAAAAACTTAGATATCTCCAACAATGCATCAAACA---TTAATTTTA--ATGACACAG-CAGTTGGTTTAACAGgtaagcatataattctcgttactagctccagtgtctttgctcattcaaca Alignment from Pairagon TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGT-----------------CAGTTGGCTCAACAG gaagaggcctaagccacattcatatctttttcttttctttctttcttcagTCAAACAAAAACTTAGATATCTCCAACAATGCATCAAACA-----------------------TTAATTTTAATGACACAGCAGTTGGTTTAACAGgtaagcatataattctcgttactagctccagtgtctttgctcattcaaca Alignment from Exonerate_protein2genome TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAG gaagaggcctaagccacattcatatctttttcttttctttctttcttcagTCAAACAAAAACTTAGATATCTCCAACAATGCATCA---AACATTAATTTTAATGACACA---GCAGTTGGTTTAACAGgtaagcatataattctcgttactagctccagtgtctttgctcattcaaca Alignment from Exonerate_coding2genome gaagaggcctaagccacattcatatctttttcttttctttctttcttcagtcaaacaaaaacttagatatctccaacaatgcatcaaacattaattttaatgacacagcagttggtttaacaggtaagcatataattctcgttactagctccagtgtctttgctcattcaaca Alignment from GeneWise TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAG gaagaggcctaagccacattcatatctttttcttttctttctttcttcagTCAAACAAAAACTTAGATATCTCCAACAATGCATCAAAC---ATTAATTTTAATGACACA---GCAGTTGGTTTAACAGgtaagcatataattctcgttactagctccagtgtctttgctcattcaaca #### BC049760_ID1437_2 --> 0 - 2 Original Alignment CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac tatgcatgccatgttctggtcagcctcacatcttccttttcttcttacagCCATCATCTGAGCCTGCATTGGATGAACAGCCTGAACCTACTGTTACATTCCTCTTCACTCTTTTAAACACATCAGTGCCAATAGATGATGAGACGacgtagtagttagggaaattttagtggttaaacgaactgagctggccggaag Alignment from CESAR CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac tatgcatgccatgttctggtcagcctcacatcttccttttcttcttacagCCATCATCTGAGCCTGCATTGGATGAACAGCCTGAACCTACTGTTACATTCCTCTTCACTCTTTTAAACACATCAGTGCCAATAGATGATGAGACGacgtagtagttagggaaattttagtggttaaacgaactgagctggccggaag Alignment from Spaln_aa2Genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC tatgcatgccatgttctggtcagcctcacatcttccttttcttcttacagCCATCATCTGAGCCTGCATTGGATGAACAGCCTGAACCTACTGTTACATTCCTCTTCACTCTTTTAAACACATCAGTGCCAATAGATGATGAGACGACgtagtagttagggaaattttagtggttaaacgaactgagctggccggaag Alignment from Spaln_nt2Genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC tatgcatgccatgttctggtcagcctcacatcttccttttcttcttacagCCATCATCTGAGCCTGCATTGGATGAACAGCCTGAACCTACTGTTACATTCCTCTTCACTCTTTTAAACACATCAGTGCCAATAGATGATGAGACGACgtagtagttagggaaattttagtggttaaacgaactgagctggccggaag Alignment from Pairagon CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC tatgcatgccatgttctggtcagcctcacatcttccttttcttcttacagCCATCATCTGAGCCTGCATTGGATGAACAGCCTGAACCTACTGTTACATTCCTCTTCACTCTTTTAAACACATCAGTGCCAATAGATGATGAGACGACgtagtagttagggaaattttagtggttaaacgaactgagctggccggaag Alignment from Exonerate_protein2genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC tatgcatgccatgttctggtcagcctcacatcttccttttcttcttacagCCATCATCTGAGCCTGCATTGGATGAACAGCCTGAACCTACTGTTACATTCCTCTTCACTCTTTTAAACACATCAGTGCCAATAGATGATGAGACGACgtagtagttagggaaattttagtggttaaacgaactgagctggccggaag Alignment from Exonerate_coding2genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC tatgcatgccatgttctggtcagcctcacatcttccttttcttcttacagCCATCATCTGAGCCTGCATTGGATGAACAGCCTGAACCTACTGTTACATTCCTCTTCACTCTTTTAAACACATCAGTGCCAATAGATGATGAGACGACgtagtagttagggaaattttagtggttaaacgaactgagctggccggaag Alignment from GeneWise CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGACG-- tatgcatgccatgttctggtcagcctcacatcttccttttcttcttacagCCATCATCTGAGCCTGCATTGGATGAACAGCCTGAACCTACTGTTACATTCCTCTTCACTCTTTTAAACACATCAGTGCCAATAGATGATGAGACGACGTAgtagttagggaaattttagtggttaaacgaactgagctggccggaag #### Bad_ID1894_2 --> 2 - 1 Original Alignment ccCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAg aactatcaagcgcgtattaagttaggtatttgtaaacttgattgctccagctGAAAGCATGTCCCAGATCCCAGAGTTTGAACTAAGTGAGCAGGAGGATTCCAGTGCCACAGGTAGTGGCTTAGGTCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGTCTCTTAGGAAGTAATGTTCATCAGCTGGGACATTCAGCAACAAAAAGCCCACTTGGAggtaagttgcttgtaaccatttctatacccaataaaagatcttttgagagg Alignment from CESAR ccCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAg aactatcaagcgcgtattaagttaggtatttgtaaacttgattgctccagctGAAAGCATGTCCCAGATCCCAGAGTTTGAACTAAGTGAGCAGGAGGATTCCAGTGCCACAGGTAGTGGCTTAGGTCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGTCTCTTAGGAAGTAATGTTCATCAGCTGGGACATTCAGCAACAAAAAGCCCACTTGGAggtaagttgcttgtaaccatttctatacccaataaaagatcttttgagagg Alignment from Spaln_aa2Genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactatcaagcgcgtattaagttaggtatttgtaaacttgattgctccagCTGAAAGCATGTCCCAGATCCCAGAGTTTGAACTAAGTGAGCAGGAGGATTCCAGTGCCACAGGTAGTGGCTTAGGTCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGTCTCTTAGGAAGTAATGTTCATCAGCTGGGACATTCAGCAACAAAAAGCCCACTTGGAGgtaagttgcttgtaaccatttctatacccaataaaagatcttttgagagg Alignment from Spaln_nt2Genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactatcaagcgcgtattaagttaggtatttgtaaacttgattgctccagCTGAAAGCATGTCCCAGATCCCAGAGTTTGAACTAAGTGAGCAGGAGGATTCCAGTGCCACAGGTAGTGGCTTAGGTCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGTCTCTTAGGAAGTAATGTTCATCAGCTGGGACATTCAGCAACAAAAAGCCCACTTGGAGgtaagttgcttgtaaccatttctatacccaataaaagatcttttgagagg Alignment from Pairagon CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactatcaagcgcgtattaagttaggtatttgtaaacttgattgctccagCTGAAAGCATGTCCCAGATCCCAGAGTTTGAACTAAGTGAGCAGGAGGATTCCAGTGCCACAGGTAGTGGCTTAGGTCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGTCTCTTAGGAAGTAATGTTCATCAGCTGGGACATTCAGCAACAAAAAGCCCACTTGGAGgtaagttgcttgtaaccatttctatacccaataaaagatcttttgagagg Alignment from Exonerate_protein2genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactatcaagcgcgtattaagttaggtatttgtaaacttgattgctccagCTGAAAGCATGTCCCAGATCCCAGAGTTTGAACTAAGTGAGCAGGAGGATTCCAGTGCCACAGGTAGTGGCTTAGGTCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGTCTCTTAGGAAGTAATGTTCATCAGCTGGGACATTCAGCAACAAAAAGCCCACTTGGAGgtaagttgcttgtaaccatttctatacccaataaaagatcttttgagagg Alignment from Exonerate_coding2genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactatcaagcgcgtattaagttaggtatttgtaaacttgattgctccagCTGAAAGCATGTCCCAGATCCCAGAGTTTGAACTAAGTGAGCAGGAGGATTCCAGTGCCACAGGTAGTGGCTTAGGTCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGTCTCTTAGGAAGTAATGTTCATCAGCTGGGACATTCAGCAACAAAAAGCCCACTTGGAGgtaagttgcttgtaaccatttctatacccaataaaagatcttttgagagg Alignment from GeneWise CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactatcaagcgcgtattaagttaggtatttgtaaacttgattgctccagCTGAAAGCATGTCCCAGATCCCAGAGTTTGAACTAAGTGAGCAGGAGGATTCCAGTGCCACAGGTAGTGGCTTAGGTCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGTCTCTTAGGAAGTAATGTTCATCAGCTGGGACATTCAGCAACAAAAAGCCCACTTGGAGgtaagttgcttgtaaccatttctatacccaataaaagatcttttgagagg #### Batf2_ID1483_2 --> 0 - 0 Original Alignment GACCTTGGGGAGTCTCAGAAACAGCTGAAGAAGAAGCAGAAGAACCGAGTGGCTGCCCAGCGCAGCCGGCAGAAGCACACCAGTAAGGCGGACGCTCTGCACCAG ttcagatccctagaccatctaactcccttattcatgtgtgttctgtgcagGACCTTGGGGAGTCTCAAAAACAGCTGACGAAGAAGCAGAAAATTCGTGTAGCTGGGCAGCGAAGTCAACAGGAGCACAGCAGTAAGACAGACGCTCTGCACCAGgtatcagttttgataaactaattaaggagaagaacacaccaagtgaggat Alignment from CESAR GACCTTGGGGAGTCTCAGAAACAGCTGAAGAAGAAGCAGAAGAACCGAGTGGCTGCCCAGCGCAGCCGGCAGAAGCACACCAGTAAGGCGGACGCTCTGCACCAG ttcagatccctagaccatctaactcccttattcatgtgtgttctgtgcagGACCTTGGGGAGTCTCAAAAACAGCTGACGAAGAAGCAGAAAATTCGTGTAGCTGGGCAGCGAAGTCAACAGGAGCACAGCAGTAAGACAGACGCTCTGCACCAGgtatcagttttgataaactaattaaggagaagaacacaccaagtgaggat Alignment from Spaln_aa2Genome GACCTTGGGGAGTCTCAGAAACAGCTGAAGAAGAAGCAGAAGAACCGAGTGGCTGCCCAGCGCAGCCGGCAGAAGCACACCAGTAAGGCGGACGCTCTGCACCAG ttcagatccctagaccatctaactcccttattcatgtgtgttctgtgcagGACCTTGGGGAGTCTCAAAAACAGCTGACGAAGAAGCAGAAAATTCGTGTAGCTGGGCAGCGAAGTCAACAGGAGCACAGCAGTAAGACAGACGCTCTGCACCAGgtatcagttttgataaactaattaaggagaagaacacaccaagtgaggat Alignment from Spaln_nt2Genome GACCTTGGGGAGTCTCAGAAACAGCTGAAGAAGAAGCAGAAGAACCGAGTGGCTGCCCAGCGCAGCCGGCAGAAGCACACCAGTAAGGCGGACGCTCTGCACCAG ttcagatccctagaccatctaactcccttattcatgtgtgttctgtgcagGACCTTGGGGAGTCTCAAAAACAGCTGACGAAGAAGCAGAAAATTCGTGTAGCTGGGCAGCGAAGTCAACAGGAGCACAGCAGTAAGACAGACGCTCTGCACCAGgtatcagttttgataaactaattaaggagaagaacacaccaagtgaggat Alignment from Pairagon GAGACAGACCTTGGGGAGTCTCAGAAACAGCTGAAGAAGAAGCAGAAGAACCGAGTGGCTGCCCAGCGCAGCCGGCAGAAGCACACCAGTAAGGCGGACGCTCTGCACCAG ttcagatccctagaccatctaactcccttattcatgtgtgttctgtgcag------GACCTTGGGGAGTCTCAAAAACAGCTGACGAAGAAGCAGAAAATTCGTGTAGCTGGGCAGCGAAGTCAACAGGAGCACAGCAGTAAGACAGACGCTCTGCACCAGgtatcagttttgataaactaattaaggagaagaacacaccaagtgaggat Alignment from Exonerate_protein2genome CTGCTGACTGAGACAGACCTTGGGGAGTCTCAGAAACAGCTGAAGAAGAAGCAGAAGAACCGAGTGGCTGCCCAGCGCAGCCGGCAGAAGCACACCAGTAAGGCGGACGCTCTGCACCAG ttcagatccctagaccatctaactcccttattcatGTGTGTTCTGTGCAGGACCTTGGGGAGTCTCAAAAACAGCTGACGAAGAAGCAGAAAATTCGTGTAGCTGGGCAGCGAAGTCAACAGGAGCACAGCAGTAAGACAGACGCTCTGCACCAGgtatcagttttgataaactaattaaggagaagaacacaccaagtgaggat Alignment from Exonerate_coding2genome GACCTTGGGGAGTCTCAGAAACAGCTGAAGAAGAAGCAGAAGAACCGAGTGGCTGCCCAGCGCAGCCGGCAGAAGCACACCAGTAAGGCGGACGCTCTGCACCAG ttcagatccctagaccatctaactcccttattcatgtgtgttctgtgcagGACCTTGGGGAGTCTCAAAAACAGCTGACGAAGAAGCAGAAAATTCGTGTAGCTGGGCAGCGAAGTCAACAGGAGCACAGCAGTAAGACAGACGCTCTGCACCAGgtatcagttttgataaactaattaaggagaagaacacaccaagtgaggat Alignment from GeneWise GACCTTGGGGAGTCTCAGAAACAGCTGAAGAAGAAGCAGAAGAACCGAGTGGCTGCCCAGCGCAGCCGGCAGAAGCACACCAGTAAGGCGGACGCTCTGCACCAG ttcagatccctagaccatctaactcccttattcatgtgtgttctgtgcagGACCTTGGGGAGTCTCAAAAACAGCTGACGAAGAAGCAGAAAATTCGTGTAGCTGGGCAGCGAAGTCAACAGGAGCACAGCAGTAAGACAGACGCTCTGCACCAGgtatcagttttgataaactaattaaggagaagaacacaccaagtgaggat #### Bbs1_ID723_11 --> 0 - 0 Original Alignment GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atcagatacatacacccctatgcatttgttgcctgctttttttctcacagGGCAAAAAACTCTGGATGGTGCATATACCTGCTGCAATTCTAACAATGAACCTTCTGGAGCAGCGATATCGAGGGCTCCAAGCTGTAATGGCTGCTTTAGTTAATGGCGCAGTCAGGATTCATCGGGATAAGACCCTGCTCAATGTCACCCATGCTCCAgtaagtattgggttagtgctagccataccttgatcaccatcttgtgtatg Alignment from CESAR GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atcagatacatacacccctatgcatttgttgcctgctttttttctcacagGGCAAAAAACTCTGGATGGTGCATATACCTGCTGCAATTCTAACAATGAACCTTCTGGAGCAGCGATATCGAGGGCTCCAAGCTGTAATGGCTGCTTTAGTTAATGGCGCAGTCAGGATTCATCGGGATAAGACCCTGCTCAATGTCACCCATGCTCCAgtaagtattgggttagtgctagccataccttgatcaccatcttgtgtatg Alignment from Spaln_aa2Genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atcagatacatacacccctatgcatttgttgcctgctttttttctcacagGGCAAAAAACTCTGGATGGTGCATATACCTGCTGCAATTCTAACAATGAACCTTCTGGAGCAGCGATATCGAGGGCTCCAAGCTGTAATGGCTGCTTTAGTTAATGGCGCAGTCAGGATTCATCGGGATAAGACCCTGCTCAATGTCACCCATGCTCCAgtaagtattgggttagtgctagccataccttgatcaccatcttgtgtatg Alignment from Spaln_nt2Genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atcagatacatacacccctatgcatttgttgcctgctttttttctcacagGGCAAAAAACTCTGGATGGTGCATATACCTGCTGCAATTCTAACAATGAACCTTCTGGAGCAGCGATATCGAGGGCTCCAAGCTGTAATGGCTGCTTTAGTTAATGGCGCAGTCAGGATTCATCGGGATAAGACCCTGCTCAATGTCACCCATGCTCCAgtaagtattgggttagtgctagccataccttgatcaccatcttgtgtatg Alignment from Pairagon GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atcagatacatacacccctatgcatttgttgcctgctttttttctcacagGGCAAAAAACTCTGGATGGTGCATATACCTGCTGCAATTCTAACAATGAACCTTCTGGAGCAGCGATATCGAGGGCTCCAAGCTGTAATGGCTGCTTTAGTTAATGGCGCAGTCAGGATTCATCGGGATAAGACCCTGCTCAATGTCACCCATGCTCCAgtaagtattgggttagtgctagccataccttgatcaccatcttgtgtatg Alignment from Exonerate_protein2genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atcagatacatacacccctatgcatttgttgcctgctttttttctcacagGGCAAAAAACTCTGGATGGTGCATATACCTGCTGCAATTCTAACAATGAACCTTCTGGAGCAGCGATATCGAGGGCTCCAAGCTGTAATGGCTGCTTTAGTTAATGGCGCAGTCAGGATTCATCGGGATAAGACCCTGCTCAATGTCACCCATGCTCCAgtaagtattgggttagtgctagccataccttgatcaccatcttgtgtatg Alignment from Exonerate_coding2genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atcagatacatacacccctatgcatttgttgcctgctttttttctcacagGGCAAAAAACTCTGGATGGTGCATATACCTGCTGCAATTCTAACAATGAACCTTCTGGAGCAGCGATATCGAGGGCTCCAAGCTGTAATGGCTGCTTTAGTTAATGGCGCAGTCAGGATTCATCGGGATAAGACCCTGCTCAATGTCACCCATGCTCCAgtaagtattgggttagtgctagccataccttgatcaccatcttgtgtatg Alignment from GeneWise GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atcagatacatacacccctatgcatttgttgcctgctttttttctcacagGGCAAAAAACTCTGGATGGTGCATATACCTGCTGCAATTCTAACAATGAACCTTCTGGAGCAGCGATATCGAGGGCTCCAAGCTGTAATGGCTGCTTTAGTTAATGGCGCAGTCAGGATTCATCGGGATAAGACCCTGCTCAATGTCACCCATGCTCCAgtaagtattgggttagtgctagccataccttgatcaccatcttgtgtatg #### Bbs1_ID724_10 --> 1 - 0 Original Alignment aGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG tattagccgcttaagagattttgcggttagtttttcttttttccctgcagaGACTGTAAGCATCCTCAGTACTGTTTAGAACTGAGTGTCCAACCTGTGGGACTAGTCCGGGCACACAAGGTCCTTGTCGTGGGTAGTACTCAGGAAGGTCTACATGGCTTTTCCCATAAAgtaatgacctctctgtgctgtccttcccacctctagaggttggcctccct Alignment from CESAR aGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG tattagccgcttaagagattttgcggttagtttttcttttttccctgcagaGACTGTAAGCATCCTCAGTACTGTTTAGAACTGAGTGTCCAACCTGTGGGACTAGTCCGGGCACACAAGGTCCTTGTCGTGGGTAGTACTCAGGAAGGTCTACATGGCTTTTCCCATAAAgtaatgacctctctgtgctgtccttcccacctctagaggttggcctccct Alignment from Spaln_aa2Genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG tattagccgcttaagagattttgcggttagtttttcttttttccctgcagAGACTGTAAGCATCCTCAGTACTGTTTAGAACTGAGTGTCCAACCTGTGGGACTAGTCCGGGCACACAAGGTCCTTGTCGTGGGTAGTACTCAGGAAGGTCTACATGGCTTTTCCCATAAAgtaatgacctctctgtgctgtccttcccacctctagaggttggcctccct Alignment from Spaln_nt2Genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG tattagccgcttaagagattttgcggttagtttttcttttttccctgcagAGACTGTAAGCATCCTCAGTACTGTTTAGAACTGAGTGTCCAACCTGTGGGACTAGTCCGGGCACACAAGGTCCTTGTCGTGGGTAGTACTCAGGAAGGTCTACATGGCTTTTCCCATAAAgtaatgacctctctgtgctgtccttcccacctctagaggttggcctccct Alignment from Pairagon AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG tattagccgcttaagagattttgcggttagtttttcttttttccctgcagAGACTGTAAGCATCCTCAGTACTGTTTAGAACTGAGTGTCCAACCTGTGGGACTAGTCCGGGCACACAAGGTCCTTGTCGTGGGTAGTACTCAGGAAGGTCTACATGGCTTTTCCCATAAAgtaatgacctctctgtgctgtccttcccacctctagaggttggcctccct Alignment from Exonerate_protein2genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG tattagccgcttaagagattttgcggttagtttttcttttttccctgcagAGACTGTAAGCATCCTCAGTACTGTTTAGAACTGAGTGTCCAACCTGTGGGACTAGTCCGGGCACACAAGGTCCTTGTCGTGGGTAGTACTCAGGAAGGTCTACATGGCTTTTCCCATAAAgtaatgacctctctgtgctgtccttcccacctctagaggttggcctccct Alignment from Exonerate_coding2genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG tattagccgcttaagagattttgcggttagtttttcttttttccctgcagAGACTGTAAGCATCCTCAGTACTGTTTAGAACTGAGTGTCCAACCTGTGGGACTAGTCCGGGCACACAAGGTCCTTGTCGTGGGTAGTACTCAGGAAGGTCTACATGGCTTTTCCCATAAAgtaatgacctctctgtgctgtccttcccacctctagaggttggcctccct Alignment from GeneWise AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG tattagccgcttaagagattttgcggttagtttttcttttttccctgcagAGACTGTAAGCATCCTCAGTACTGTTTAGAACTGAGTGTCCAACCTGTGGGACTAGTCCGGGCACACAAGGTCCTTGTCGTGGGTAGTACTCAGGAAGGTCTACATGGCTTTTCCCATAAAgtaatgacctctctgtgctgtccttcccacctctagaggttggcctccct #### Bbs1_ID725_9 --> 0 - 2 Original Alignment ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAag ccggcaggttatggtgaatggcaggtattccccaccgccccaccctgaagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGATGTTGAGTTCCAGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGAcagtatgttagtcatcagcaaaaagggctggactgttgcttgagcccgccag Alignment from CESAR ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAag ccggcaggttatggtgaatggcaggtattccccaccgccccaccctgaagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGATGTTGAGTTCCAGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGAcagtatgttagtcatcagcaaaaagggctggactgttgcttgagcccgccag Alignment from Spaln_aa2Genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG ccggcaggttatggtgaatggcaggtattccccaccgccccaccctgaagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGATGTTGAGTTCCAGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtatgttagtcatcagcaaaaagggctggactgttgcttgagcccgccag Alignment from Spaln_nt2Genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG ccggcaggttatggtgaatggcaggtattccccaccgccccaccctgaagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGATGTTGAGTTCCAGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtatgttagtcatcagcaaaaagggctggactgttgcttgagcccgccag Alignment from Pairagon ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG ccggcaggttatggtgaatggcaggtattccccaccgccccaccctgaagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGATGTTGAGTTCCAGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtatgttagtcatcagcaaaaagggctggactgttgcttgagcccgccag Alignment from Exonerate_protein2genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG ccggcaggttatggtgaatggcaggtattccccaccgccccaccctgaagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGATGTTGAGTTCCAGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtatgttagtcatcagcaaaaagggctggactgttgcttgagcccgccag Alignment from Exonerate_coding2genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG ccggcaggttatggtgaatggcaggtattccccaccgccccaccctgaagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGATGTTGAGTTCCAGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtatgttagtcatcagcaaaaagggctggactgttgcttgagcccgccag Alignment from GeneWise ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG ccggcaggttatggtgaatggcaggtattccccaccgccccaccctgaagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGATGTTGAGTTCCAGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtatgttagtcatcagcaaaaagggctggactgttgcttgagcccgccag #### Bbs1_ID726_8 --> 0 - 0 Original Alignment ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG tcttggcctgttttggtcaggtgtagaagtcttttaaacttgtctttcagGCAGTAATGACCACCACAACTACGCTCAAAAAGAATCTGGCAGATGAGGATGCGGCGTCCTGTCTGGTATTAGGGGCTGAGAGCAAAGAGCTGTTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtacccggtgaatctccctgcttgggtttaatccagtgcattctgccacc Alignment from CESAR ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG tcttggcctgttttggtcaggtgtagaagtcttttaaacttgtctttcagGCAGTAATGACCACCACAACTACGCTCAAAAAGAATCTGGCAGATGAGGATGCGGCGTCCTGTCTGGTATTAGGGGCTGAGAGCAAAGAGCTGTTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtacccggtgaatctccctgcttgggtttaatccagtgcattctgccacc Alignment from Spaln_aa2Genome ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG tcttggcctgttttggtcaggtgtagaagtcttttaaacttgtctttcagGCAGTAATGACCACCACAACTACGCTCAAAAAGAATCTGGCAGATGAGGATGCGGCGTCCTGTCTGGTATTAGGGGCTGAGAGCAAAGAGCTGTTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtacccggtgaatctccctgcttgggtttaatccagtgcattctgccacc Alignment from Spaln_nt2Genome ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG tcttggcctgttttggtcaggtgtagaagtcttttaaacttgtctttcagGCAGTAATGACCACCACAACTACGCTCAAAAAGAATCTGGCAGATGAGGATGCGGCGTCCTGTCTGGTATTAGGGGCTGAGAGCAAAGAGCTGTTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtacccggtgaatctccctgcttgggtttaatccagtgcattctgccacc Alignment from Pairagon ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG tcttggcctgttttggtcaggtgtagaagtcttttaaacttgtctttcagGCAGTAATGACCACCACAACTACGCTCAAAAAGAATCTGGCAGATGAGGATGCGGCGTCCTGTCTGGTATTAGGGGCTGAGAGCAAAGAGCTGTTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtacccggtgaatctccctgcttgggtttaatccagtgcattctgccacc Alignment from Exonerate_protein2genome ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG tcttggcctgttttggtcaggtgtagaagtcttttaaacttgtctttcagGCAGTAATGACCACCACAACTACGCTCAAAAAGAATCTGGCAGATGAGGATGCGGCGTCCTGTCTGGTATTAGGGGCTGAGAGCAAAGAGCTGTTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtacccggtgaatctccctgcttgggtttaatccagtgcattctgccacc Alignment from Exonerate_coding2genome ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG tcttggcctgttttggtcaggtgtagaagtcttttaaacttgtctttcagGCAGTAATGACCACCACAACTACGCTCAAAAAGAATCTGGCAGATGAGGATGCGGCGTCCTGTCTGGTATTAGGGGCTGAGAGCAAAGAGCTGTTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtacccggtgaatctccctgcttgggtttaatccagtgcattctgccacc Alignment from GeneWise ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG tcttggcctgttttggtcaggtgtagaagtcttttaaacttgtctttcagGCAGTAATGACCACCACAACTACGCTCAAAAAGAATCTGGCAGATGAGGATGCGGCGTCCTGTCTGGTATTAGGGGCTGAGAGCAAAGAGCTGTTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtacccggtgaatctccctgcttgggtttaatccagtgcattctgccacc #### Bbs1_ID728_6 --> 1 - 2 Original Alignment gGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCag ttttcatggtggcgcctcaatattccttgactcttgccggcttcccacagaGAAAAGGCAGATTTACCCTTATCTGTCCAGTCACTTaggtgagcatttattgcaaagaggaatgggtcagtgacatgtagggctgcta Alignment from CESAR gGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCag ttttcatggtggcgcctcaatattccttgactcttgccggcttcccacagaGAAAAGGCAGATTTACCCTTATCTGTCCAGTCACTTaggtgagcatttattgcaaagaggaatgggtcagtgacatgtagggctgcta Alignment from Spaln_aa2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ttttcatggtggcgcctcaatattccttgactcttgccggcttcccacagAGAAAAGGCAGATTTACCCTTATCTGTCCAGTCACTTAGgtgagcatttattgcaaagaggaatgggtcagtgacatgtagggctgcta Alignment from Spaln_nt2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ttttcatggtggcgcctcaatattccttgactcttgccggcttcccacagAGAAAAGGCAGATTTACCCTTATCTGTCCAGTCACTTAGgtgagcatttattgcaaagaggaatgggtcagtgacatgtagggctgcta Alignment from Pairagon GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ttttcatggtggcgcctcaatattccttgactcttgccggcttcccacagAGAAAAGGCAGATTTACCCTTATCTGTCCAGTCACTTAGgtgagcatttattgcaaagaggaatgggtcagtgacatgtagggctgcta Alignment from Exonerate_protein2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ttttcatggtggcgcctcaatattccttgactcttgccggcttcccacagAGAAAAGGCAGATTTACCCTTATCTGTCCAGTCACTTAGgtgagcatttattgcaaagaggaatgggtcagtgacatgtagggctgcta Alignment from Exonerate_coding2genome CAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAGGGAAAAGGCAGACG ttttcatggtggcgcctcaatattccttgactcttgccggcttcccacagagaaaaggcagatttacccttatctgtccagTCACTTAGGTGAGCATTTATTGCAAAGAGGAATGGGTCAGTGACATGTAGGGCTGCTA Alignment from GeneWise GAGATGCTGGAGGACATCAGGGAAAAGGCAG ttttcatggtggcgcctcaatattccttgactcttgccggcttcccacagagaaaaggcagatttacccttatctgtccagtcacttaggtgagcatttattgcaaagAGGAAT---GGGTCAGTGACATGTAGGGCTG #### Bbs1_ID730_4 --> 0 - 0 Original Alignment CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG tgatgtgagtatgtgtgtggagaggtcagtttgtgcttttctattttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACCGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTTATGGATCAACATGAGTCCAGAACACCTGCTCTGGCGCTTGCTTCAGGACCTTGTGTTTATGTTTATAAGAACCTCCGACCCTATTTTAAATTGAGTCTTCCCCAGTTA---ACAAACCCTCTAAAACAAGATGTTTGGAACCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattaaaaa Alignment from CESAR CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG tgatgtgagtatgtgtgtggagaggtcagtttgtgcttttctattttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACCGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTTATGGATCAACATGAGTCCAGAACACCTGCTCTGGCGCTTGCTTCAGGACCTTGTGTTTATGTTTATAAGAACCTCCGACCCTATTTTAAATTGAGTCTTCCCCAGTTA---ACAAACCCTCTAAAACAAGATGTTTGGAACCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattaaaaa Alignment from Spaln_aa2Genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG tgatgtgagtatgtgtgtggagaggtcagtttgtgcttttctattttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACCGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTTATGGATCAACATGAGTCCAGAACACCTGCTCTGGCGCTTGCTTCAGGACCTTGTGTTTATGTTTATAAGAACCTCCGACCCTATTTTAAATTGAGTCTTCCCCAGTTA---ACAAACCCTCTAAAACAAGATGTTTGGAACCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattaaaaa Alignment from Spaln_nt2Genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG tgatgtgagtatgtgtgtggagaggtcagtttgtgcttttctattttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACCGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTTATGGATCAACATGAGTCCAGAACACCTGCTCTGGCGCTTGCTTCAGGACCTTGTGTTTATGTTTATAAGAACCTCCGACCCTATTTTAAATTGAGTCTTCCCCAGTTA---ACAAACCCTCTAAAACAAGATGTTTGGAACCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattaaaaa Alignment from Pairagon CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG tgatgtgagtatgtgtgtggagaggtcagtttgtgcttttctattttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACCGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTTATGGATCAACATGAGTCCAGAACACCTGCTCTGGCGCTTGCTTCAGGACCTTGTGTTTATGTTTATAAGAACCTCCGACCCTATTTTAAATTGAGTCTTCCCCAGTTA---ACAAACCCTCTAAAACAAGATGTTTGGAACCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattaaaaa Alignment from Exonerate_protein2genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG tgatgtgagtatgtgtgtggagaggtcagtttgtgcttttctattttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACCGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTTATGGATCAACATGAGTCCAGAACACCTGCTCTGGCGCTTGCTTCAGGACCTTGTGTTTATGTTTATAAGAACCTCCGACCCTATTTTAAATTGAGTCTTCCCCAGTTA---ACAAACCCTCTAAAACAAGATGTTTGGAACCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattaaaaa Alignment from Exonerate_coding2genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG tgatgtgagtatgtgtgtggagaggtcagtttgtgcttttctattttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACCGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTTATGGATCAACATGAGTCCAGAACACCTGCTCTGGCGCTTGCTTCAGGACCTTGTGTTTATGTTTATAAGAACCTCCGACCCTATTTTAAATTGAGTCTTCCCCAGTTA---ACAAACCCTCTAAAACAAGATGTTTGGAACCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattaaaaa Alignment from GeneWise CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG tgatgtgagtatgtgtgtggagaggtcagtttgtgcttttctattttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACCGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTTATGGATCAACATGAGTCCAGAACACCTGCTCTGGCGCTTGCTTCAGGACCTTGTGTTTATGTTTATAAGAACCTCCGACCCTATTTTAAATTGAGTCTTCCCCAGTTAACA---AACCCTCTAAAACAAGATGTTTGGAACCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattaaaaa #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag cctctgcctttgatcaaatcatttaaccatttatgtcctttatctcatagGTGGCATTGTCATTTGTTGACCGAATGTACCAGAACCTGCCACCCATGGAGCGTGAAATGTACTGGAATGAATCA---GCTCATCCT------ACAGCTGCCTCAGCCAAATCCCGATGGCGCTCATTCATGGGAACAACCTTTAACCCCaggtaaggtatcccgcaatgcatccaggagaacatttcatatgctcaaactg Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag cctctgcctttgatcaaatcatttaaccatttatgtcctttatctcatagGTGGCATTGTCATTTGTTGACCGAATGTACCAGAACCTGCCACCCATGGAGCGTGAAATGTACTGGAATGAATCAGCT---CATCCT------ACAGCTGCCTCAGCCAAATCCCGATGGCGCTCATTCATGGGAACAACCTTTAACCCCaggtaaggtatcccgcaatgcatccaggagaacatttcatatgctcaaactg Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG cctctgcctttgatcaaatcatttaaccatttatgtcctttatctcatagGTGGCATTGTCATTTGTTGACCGAATGTACCAGAACCTGCCACCCATGGAGCGTGAAATGTACTGGAATGAATCAGCTCATCCT---------ACAGCTGCCTCAGCCAAATCCCGATGGCGCTCATTCATGGGAACAACCTTTAACCCCAGgtaaggtatcccgcaatgcatccaggagaacatttcatatgctcaaactg Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG cctctgcctttgatcaaatcatttaaccatttatgtcctttatctcatagGTGGCATTGTCATTTGTTGACCGAATGTACCAGAACCTGCCACCCATGGAGCGTGAAATGTACTGGAATGAATCAG---CTCATCC------TACAGCTGCCTCAGCCAAATCCCGATGGCGCTCATTCATGGGAACAACCTTTAACCCCAGgtaaggtatcccgcaatgcatccaggagaacatttcatatgctcaaactg Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG cctctgcctttgatcaaatcatttaaccatttatgtcctttatctcatagGTGGCATTGTCATTTGTTGACCGAATGTACCAGAACCTGCCACCCATGGAGCGTGAAATGTACTGGAATGAATCAGCTCATC---------CTACAGCTGCCTCAGCCAAATCCCGATGGCGCTCATTCATGGGAACAACCTTTAACCCCAGgtaaggtatcccgcaatgcatccaggagaacatttcatatgctcaaactg Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG cctctgcctttgatcaaatcatttaaccatttatgtcctttatctcatagGTGGCATTGTCATTTGTTGACCGAATGTACCAGAACCTGCCACCCATGGAGCGTGAAATGTACTGGAATGAATCAGCT---CATCCT------ACAGCTGCCTCAGCCAAATCCCGATGGCGCTCATTCATGGGAACAACCTTTAACCCCAGgtaaggtatcccgcaatgcatccaggagaacatttcatatgctcaaactg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG cctctgcctttgatcaaatcatttaaccatttatgtcctttatctcatagGTGGCATTGTCATTTGTTGACCGAATGTACCAGAACCTGCCACCCATGGAGCGTGAAATGTACTGGAATGAATCAGCT---CATCCT------ACAGCTGCCTCAGCCAAATCCCGATGGCGCTCATTCATGGGAACAACCTTTAACCCCAGgtaaggtatcccgcaatgcatccaggagaacatttcatatgctcaaactg #### Best1_ID2632_7 --> 0 - 0 Original Alignment GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattgttggggtctaaatcttcagcttgggtgtcgtcactctcctagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAATTTGCAAgtaaaagaggaattgggggagatgtatgtgtacccagcacagctcttacc Alignment from CESAR GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattgttggggtctaaatcttcagcttgggtgtcgtcactctcctagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAATTTGCAAgtaaaagaggaattgggggagatgtatgtgtacccagcacagctcttacc Alignment from Spaln_aa2Genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattgttggggtctaaatcttcagcttgggtgtcgtcactctcctagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAATTTGCAAgtaaaagaggaattgggggagatgtatgtgtacccagcacagctcttacc Alignment from Spaln_nt2Genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattgttggggtctaaatcttcagcttgggtgtcgtcactctcctagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAATTTGCAAgtaaaagaggaattgggggagatgtatgtgtacccagcacagctcttacc Alignment from Pairagon GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattgttggggtctaaatcttcagcttgggtgtcgtcactctcctagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAATTTGCAAgtaaaagaggaattgggggagatgtatgtgtacccagcacagctcttacc Alignment from Exonerate_protein2genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattgttggggtctaaatcttcagcttgggtgtcgtcactctcctagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAATTTGCAAgtaaaagaggaattgggggagatgtatgtgtacccagcacagctcttacc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattgttggggtctaaatcttcagcttgggtgtcgtcactctcctagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAATTTGCAAgtaaaagaggaattgggggagatgtatgtgtacccagcacagctcttacc #### Best1_ID2635_4 --> 2 - 0 Original Alignment gtTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT gcattcctgaacccccaggtcaattgggtattatttatttttttttaaaggtTTCAGGACACATGGAGAGCATAAGCAATTGCAAAAGCTAGGTTTACCACATAACACATTTTGGGTCCCATGGGTCTGGTTTGCTAATTTGTCAATGAAAGCCTACCTTGGAAGTAGGGTTCATGATACCATTCTTCTCCAGAGCTTGATGAATgtgagagtgggggcacacttgagcgttccttacggactaggggccatcta Alignment from CESAR gtTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT gcattcctgaacccccaggtcaattgggtattatttatttttttttaaaggtTTCAGGACACATGGAGAGCATAAGCAATTGCAAAAGCTAGGTTTACCACATAACACATTTTGGGTCCCATGGGTCTGGTTTGCTAATTTGTCAATGAAAGCCTACCTTGGAAGTAGGGTTCATGATACCATTCTTCTCCAGAGCTTGATGAATgtgagagtgggggcacacttgagcgttccttacggactaggggccatcta Alignment from Spaln_aa2Genome GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT gcattcctgaacccccaggtcaattgggtattatttatttttttttaaagGTTTCAGGACACATGGAGAGCATAAGCAATTGCAAAAGCTAGGTTTACCACATAACACATTTTGGGTCCCATGGGTCTGGTTTGCTAATTTGTCAATGAAAGCCTACCTTGGAAGTAGGGTTCATGATACCATTCTTCTCCAGAGCTTGATGAATgtgagagtgggggcacacttgagcgttccttacggactaggggccatcta Alignment from Spaln_nt2Genome GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT gcattcctgaacccccaggtcaattgggtattatttatttttttttaaagGTTTCAGGACACATGGAGAGCATAAGCAATTGCAAAAGCTAGGTTTACCACATAACACATTTTGGGTCCCATGGGTCTGGTTTGCTAATTTGTCAATGAAAGCCTACCTTGGAAGTAGGGTTCATGATACCATTCTTCTCCAGAGCTTGATGAATgtgagagtgggggcacacttgagcgttccttacggactaggggccatcta Alignment from Pairagon GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT gcattcctgaacccccaggtcaattgggtattatttatttttttttaaagGTTTCAGGACACATGGAGAGCATAAGCAATTGCAAAAGCTAGGTTTACCACATAACACATTTTGGGTCCCATGGGTCTGGTTTGCTAATTTGTCAATGAAAGCCTACCTTGGAAGTAGGGTTCATGATACCATTCTTCTCCAGAGCTTGATGAATgtgagagtgggggcacacttgagcgttccttacggactaggggccatcta Alignment from Exonerate_protein2genome GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT gcattcctgaacccccaggtcaattgggtattatttatttttttttaaagGTTTCAGGACACATGGAGAGCATAAGCAATTGCAAAAGCTAGGTTTACCACATAACACATTTTGGGTCCCATGGGTCTGGTTTGCTAATTTGTCAATGAAAGCCTACCTTGGAAGTAGGGTTCATGATACCATTCTTCTCCAGAGCTTGATGAATgtgagagtgggggcacacttgagcgttccttacggactaggggccatcta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAATGAGGTG gcattcctgaacccccaggtcaattgggtattatttatttttttttaaagGTTTCAGGACACATGGAGAGCATAAGCAATTGCAAAAGCTAGGTTTACCACATAACACATTTTGGGTCCCATGGGTCTGGTTTGCTAATTTGTCAATGAAAGCCTACCTTGGAAGTAGGGTTCATGATACCATTCTTCTCCAGAGCTTGATGAATGTGAGAgtgggggcacacttgagcgttccttacggactaggggccatcta #### Blnk_ID8058_13 --> 1 - 1 Original Alignment aCCTGTCCATCAAAAGCCTGTACCCTTGCCAa aggcctattttttttatggtcaatcccccccccatgttttctcctcacaggCCAGTCCATCAGGGACCTGTCCAACTGTCAagtaagtgacttttggctcctttgccctttccaaatttggtcttaaaaaag Alignment from CESAR aCCTGTCCATCAAAAGCCTGTACCCTTGCCAa aggcctattttttttatggtcaatcccccccccatgttttctcctcacaggCCAGTCCATCAGGGACCTGTCCAACTGTCAagtaagtgacttttggctcctttgccctttccaaatttggtcttaaaaaag Alignment from Spaln_aa2Genome ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA aggcctattttttttatggtcaatcccccccccatgttttctcctcacagGCCAGTCCATCAGGGACCTGTCCAACTGTCAAgtaagtgacttttggctcctttgccctttccaaatttggtcttaaaaaag Alignment from Spaln_nt2Genome ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA aggcctattttttttatggtcaatcccccccccatgttttctcctcacagGCCAGTCCATCAGGGACCTGTCCAACTGTCAAgtaagtgacttttggctcctttgccctttccaaatttggtcttaaaaaag Alignment from Pairagon ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA aggcctattttttttatggtcaatcccccccccatgttttctcctcacagGCCAGTCCATCAGGGACCTGTCCAACTGTCAAgtaagtgacttttggctcctttgccctttccaaatttggtcttaaaaaag Alignment from Exonerate_protein2genome aggcctattttttttatggtcaatcccccccccatgttttctcctcacaggccagtccatcagggacctgtccaactgtcaagtaagtgacttttggctcctttgccctttccaaatttggtcttaaaaaag Alignment from Exonerate_coding2genome aggcctattttttttatggtcaatcccccccccatgttttctcctcacaggccagtccatcagggacctgtccaactgtcaagtaagtgacttttggctcctttgccctttccaaatttggtcttaaaaaag Alignment from GeneWise ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA aggcctattttttttatggtcaatcccccccccatgttttctcctcacagGCCAGTCCATCAGGGACCTGTCCAACTGTCAAgtaagtgacttttggctcctttgccctttccaaatttggtcttaaaaaag #### Blnk_ID8066_5 --> 0 - 1 Original Alignment GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg acctactgtcctgtctgggagttgaggacctgtaactggtttcctcctagGACAGTGACTATGAAAATCCGGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTTCATCCAGCACTGCCCTTCACAAGGGGCGAGTATGTAggtgagttggtcatattactccagacataaggaaggaaacactgggccagg Alignment from CESAR GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg acctactgtcctgtctgggagttgaggacctgtaactggtttcctcctagGACAGTGACTATGAAAATCCGGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTTCATCCAGCACTGCCCTTCACAAGGGGCGAGTATGTAggtgagttggtcatattactccagacataaggaaggaaacactgggccagg Alignment from Spaln_aa2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtcctgtctgggagttgaggacctgtaactggtttcctcctagGACAGTGACTATGAAAATCCGGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTTCATCCAGCACTGCCCTTCACAAGGGGCGAGTATGTAGgtgagttggtcatattactccagacataaggaaggaaacactgggccagg Alignment from Spaln_nt2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtcctgtctgggagttgaggacctgtaactggtttcctcctagGACAGTGACTATGAAAATCCGGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTTCATCCAGCACTGCCCTTCACAAGGGGCGAGTATGTAGgtgagttggtcatattactccagacataaggaaggaaacactgggccagg Alignment from Pairagon GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtcctgtctgggagttgaggacctgtaactggtttcctcctagGACAGTGACTATGAAAATCCGGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTTCATCCAGCACTGCCCTTCACAAGGGGCGAGTATGTAGgtgagttggtcatattactccagacataaggaaggaaacactgggccagg Alignment from Exonerate_protein2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtcctgtctgggagttgaggacctgtaactggtttcctcctagGACAGTGACTATGAAAATCCGGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTTCATCCAGCACTGCCCTTCACAAGGGGCGAGTATGTAGgtgagttggtcatattactccagacataaggaaggaaacactgggccagg Alignment from Exonerate_coding2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtcctgtctgggagttgaggacctgtaactggtttcctcctagGACAGTGACTATGAAAATCCGGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTTCATCCAGCACTGCCCTTCACAAGGGGCGAGTATGTAGgtgagttggtcatattactccagacataaggaaggaaacactgggccagg Alignment from GeneWise GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtcctgtctgggagttgaggacctgtaactggtttcctcctagGACAGTGACTATGAAAATCCGGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTTCATCCAGCACTGCCCTTCACAAGGGGCGAGTATGTAGgtgagttggtcatattactccagacataaggaaggaaacactgggccagg #### Bloc1s2_ID8949_2 --> 2 - 1 Original Alignment atGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAg gacaggtccaaagggggccgtcccctcaaatcgtttttccttctcatcagatGATGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCAGAC---AATGAGCTCTGTCAAGACATGTGCTCCAAAATGTCCACATATTTGGCTGGGGAGCTGACAggtaagtggaggtacttttgtggacagcacaggcctctttgccacaaaggg Alignment from CESAR atGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAg gacaggtccaaagggggccgtcccctcaaatcgtttttccttctcatcagatGATGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCAGAC---AATGAGCTCTGTCAAGACATGTGCTCCAAAATGTCCACATATTTGGCTGGGGAGCTGACAggtaagtggaggtacttttgtggacagcacaggcctctttgccacaaaggg Alignment from Spaln_aa2Genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtccaaagggggccgtcccctcaaatcgtttttccttctcatcagATGATGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCAGAC---AATGAGCTCTGTCAAGACATGTGCTCCAAAATGTCCACATATTTGGCTGGGGAGCTGACAGgtaagtggaggtacttttgtggacagcacaggcctctttgccacaaaggg Alignment from Spaln_nt2Genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtccaaagggggccgtcccctcaaatcgtttttccttctcatcagATGATGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCAGA---CAATGAGCTCTGTCAAGACATGTGCTCCAAAATGTCCACATATTTGGCTGGGGAGCTGACAGgtaagtggaggtacttttgtggacagcacaggcctctttgccacaaaggg Alignment from Pairagon AGATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtccaaagggggccgtcccctcaaatcgtttttccttctcatcAGATGATGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCAGA---CAATGAGCTCTGTCAAGACATGTGCTCCAAAATGTCCACATATTTGGCTGGGGAGCTGACAGgtaagtggaggtacttttgtggacagcacaggcctctttgccacaaaggg Alignment from Exonerate_protein2genome GATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtccaaagggggccgtcccctcaaatcgtttttccttctcatcaGATGATGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCAGAC---AATGAGCTCTGTCAAGACATGTGCTCCAAAATGTCCACATATTTGGCTGGGGAGCTGACAGgtaagtggaggtacttttgtggacagcacaggcctctttgccacaaaggg Alignment from Exonerate_coding2genome GATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtccaaagggggccgtcccctcaaatcgtttttccttctcatcaGATGATGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCAGAC---AATGAGCTCTGTCAAGACATGTGCTCCAAAATGTCCACATATTTGGCTGGGGAGCTGACAGgtaagtggaggtacttttgtggacagcacaggcctctttgccacaaaggg Alignment from GeneWise GGCTGCGGAGGGCGTCCCGGCGACGCGACGGGAGGAGCAGCCACCTCGAGATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG TCCAAAGGGGGCCGTCCCCTCAAATCGTTTTTCCTTCTCA------TCAGATGATGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCAGAC---AATGAGCTCTGTCAAGACATGTGCTCCAAAATGTCCACATATTTGGCTGGGGAGCTGACAGgtaagtggaggtacttttgtggacagcacaggcctctttgccacaaaggg #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cagtgatcacgacacccttctgcacctaaagttgatttctctgtttttagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAAGTGCTATTCTCCAGCCTCTTGCTCTTCGGCTTTGCAAATCAAAAGCAGCTATTGGAAGGCATGAGACCACCATTAGAAATCTATAGTGACTAT---GACAACTCAgcaagtgggcaagttgtaatatatttctcaatgggccagaattgcatcac Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cagtgatcacgacacccttctgcacctaaagttgatttctctgtttttagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAAGTGCTATTCTCCAGCCTCTTGCTCTTCGGCTTTGCAAATCAAAAGCAGCTATTGGAAGGCATGAGACCACCATTAGAAATCTATAGTGACTAT---GACAACTCAgcaagtgggcaagttgtaatatatttctcaatgggccagaattgcatatc Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cagtgatcacgacacccttctgcacctaaagttgatttctctgtttttagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAAGTGCTATTCTCCAGCCTCTTGCTCTTCGGCTTTGCAAATCAAAAGCAGCTATTGGAAGGCATGAGACCACCATTAGAAATCTATAGTGACTAT---GACAACTCAgcaagtgggcaagttgtaatatatttctcaatgggccagaattgcatcac Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cagtgatcacgacacccttctgcacctaaagttgatttctctgtttttagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAAGTGCTATTCTCCAGCCTCTTGCTCTTCGGCTTTGCAAATCAAAAGCAGCTATTGGAAGGCATGAGACCACCATTAGAAATCTATAGTGACTAT---GACAACTCAgcaagtgggcaagttgtaatatatttctcaatgggccagaattgcatcac Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cagtgatcacgacacccttctgcacctaaagttgatttctctgtttttagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAAGTGCTATTCTCCAGCCTCTTGCTCTTCGGCTTTGCAAATCAAAAGCAGCTATTGGAAGGCATGAGACCACCATTAGAAATCTATAGTGACTAT---GACAACTCAgcaagtgggcaagttgtaatatatttctcaatgggccagaattgcatcac Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAGTA GAACTCTACTC cagtgatcacgacacccttctgcacctaaagttgatttctctgtttttagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAAGTGCTATTCTCCAGCCTCTTGCTCTTCGGCTTTGCAAATCAAAAGCAGCTATTGGAAGGCatgagaccaccattagaaatctatagtgactatgacaactcagcaagtgggcaagttgtaatatatttctcaatgggccagAATTGCATCAC Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAGTA GAACTCTACTC cagtgatcacgacacccttctgcacctaaagttgatttctctgtttttagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAAGTGCTATTCTCCAGCCTCTTGCTCTTCGGCTTTGCAAATCAAAAGCAGCTATTGGAAGGCatgagaccaccattagaaatctatagtgactatgacaactcagcaagtgggcaagttgtaatatatttctcaatgggccagAATTGCATCAC Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG----------------------------------------------- cagtgatcacgacacccttctgcacctaaagttgatttctctgtttttagGTAATGCTGCAATATTGCTTACAATTGCTTCAAGTTCTTGACAAAGTGCTATTCTCCAGCCTCTTGCTCTTCGGCTTTGCAAATCAAAAGCAGCTATTGGAAGGCATGAGACCACCATTAGAAATCTATAGTGACTATGACAACTCAGCAAGTGGGCAAGTTGTAATATATTTCTCAATGGGCCAGAATTGCATCAC #### Btaf1_ID7217_2 --> 1 - 0 Original Alignment gCTT---GATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG cacacaagagagaccctggcatgtgggatgcctggtctctctggcttcagaATTATAGATCGCCTATTCATTTTATTAGATACTGGAACCACCCCGGTTACCAAAAAGGCTGCTGCACAACAACTAGGAGAAGTGGTGAAGTTGCATCCTCATGAATTGAACAATTTGCTCTCAAAGgttggccttggtggttcttacacatataaccactaaaaattaattttaca Alignment from CESAR gCTT---GATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG cacacaagagagaccctggcatgtgggatgcctggtctctctggcttcagaATTATAGATCGCCTATTCATTTTATTAGATACTGGAACCACCCCGGTTACCAAAAAGGCTGCTGCACAACAACTAGGAGAAGTGGTGAAGTTGCATCCTCATGAATTGAACAATTTGCTCTCAAAGgttggccttggtggttcttacacatataaccactaaaaattaattttaca Alignment from Spaln_aa2Genome ---------------GCGGTCTCCAGGCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG cacacaagagagaccctggcatgtgggATGCCTGGTCTCTCTGGCTTCAGAATTATAGATCGCCTATTCATTTTATTAGATACTGGAACCACCCCGGTTACCAAAAAGGCTGCTGCACAACAACTAGGAGAAGTGGTGAAGTTGCATCCTCATGAATTGAACAATTTGCTCTCAAAGgttggccttggtggttcttacacatataaccactaaaaattaattttaca Alignment from Spaln_nt2Genome ATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG cacacaagagagaccctggcatgtgggatgcctggtctctctggcttcagaattatagATCGCCTATTCATTTTATTAGATACTGGAACCACCCCGGTTACCAAAAAGGCTGCTGCACAACAACTAGGAGAAGTGGTGAAGTTGCATCCTCATGAATTGAACAATTTGCTCTCAAAGgttggccttggtggttcttacacatataaccactaaaaattaattttaca Alignment from Pairagon GCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG cacacaagagagaccctggcatgtgggatgcctggtctctctggcttcagaattatag-----ATCGCCTATTCATTTTATTAGATACTGGAACCACCCCGGTTACCAAAAAGGCTGCTGCACAACAACTAGGAGAAGTGGTGAAGTTGCATCCTCATGAATTGAACAATTTGCTCTCAAAGgttggccttggtggttcttacacatataaccactaaaaattaattttaca Alignment from Exonerate_protein2genome CTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG cacacaagagagaccctggcatgtgggatgcctggtctctctggcttcagaattATAGATCGCCTATTCATTTTATTAGATACTGGAACCACCCCGGTTACCAAAAAGGCTGCTGCACAACAACTAGGAGAAGTGGTGAAGTTGCATCCTCATGAATTGAACAATTTGCTCTCAAAGgttggccttggtggttcttacacatataaccactaaaaattaattttaca Alignment from Exonerate_coding2genome CTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG cacacaagagagaccctggcatgtgggatgcctggtctctctggcttcagaattATAGATCGCCTATTCATTTTATTAGATACTGGAACCACCCCGGTTACCAAAAAGGCTGCTGCACAACAACTAGGAGAAGTGGTGAAGTTGCATCCTCATGAATTGAACAATTTGCTCTCAAAGgttggccttggtggttcttacacatataaccactaaaaattaattttaca Alignment from GeneWise GCGGTCTCCAGGCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG cacacaagagagaccctggcatgtgggatgcctggtctctctGGCTTCAGAATTATAGATCGCCTATTCATTTTATTAGATACTGGAACCACCCCGGTTACCAAAAAGGCTGCTGCACAACAACTAGGAGAAGTGGTGAAGTTGCATCCTCATGAATTGAACAATTTGCTCTCAAAGgttggccttggtggttcttacacatataaccactaaaaattaattttaca #### Btaf1_ID7219_3 --> 0 - 1 Original Alignment GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAg tgagaattggacttaataataaacccctcgattaacatgttcgtttgtagGTAATTATATTTTTAAGTAGTACAAACTGGGATACACGGATTGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAggtaagcttgaagagggtagactgaaattgatgaacaagaaatgaaatggc Alignment from CESAR GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAg tgagaattggacttaataataaacccctcgattaacatgttcgtttgtagGTAATTATATTTTTAAGTAGTACAAACTGGGATACACGGATTGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAggtaagcttgaagagggtagactgaaattgatgaacaagaaatgaaatggc Alignment from Spaln_aa2Genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAGAACC tgagaattggacttaataataaacccctcgattaacatgttcgtttgtagGTAATTATATTTTTAAGTAGTACAAACTGGGATACACGGATTGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGGTAAgcttgaagagggtagactgaaattgatgaacaagaaatgaaatggc Alignment from Spaln_nt2Genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG tgagaattggacttaataataaacccctcgattaacatgttcgtttgtagGTAATTATATTTTTAAGTAGTACAAACTGGGATACACGGATTGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGgtaagcttgaagagggtagactgaaattgatgaacaagaaatgaaatggc Alignment from Pairagon GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG tgagaattggacttaataataaacccctcgattaacatgttcgtttgtagGTAATTATATTTTTAAGTAGTACAAACTGGGATACACGGATTGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGgtaagcttgaagagggtagactgaaattgatgaacaagaaatgaaatggc Alignment from Exonerate_protein2genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG tgagaattggacttaataataaacccctcgattaacatgttcgtttgtagGTAATTATATTTTTAAGTAGTACAAACTGGGATACACGGATTGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGgtaagcttgaagagggtagactgaaattgatgaacaagaaatgaaatggc Alignment from Exonerate_coding2genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG tgagaattggacttaataataaacccctcgattaacatgttcgtttgtagGTAATTATATTTTTAAGTAGTACAAACTGGGATACACGGATTGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGgtaagcttgaagagggtagactgaaattgatgaacaagaaatgaaatggc Alignment from GeneWise GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAA- tgagaattggacttaataataaacccctcgattaacatgttcgtttgtagGTAATTATATTTTTAAGTAGTACAAACTGGGATACACGGATTGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGgtaagcttgaagagggtagactgaaattgatgaacaagaaatgaaatggc #### Btaf1_ID7221_4 --> 2 - 1 Original Alignment aaCCTACAGAGAGT---------TCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAg ttgacttgagaataaaatgaactgagatcttctccgtttctatgcttcagaaTCTGCTGAAAGCTCGGAAAGTTCTATGGAAGACTCATCTAATGCAGATCAATTTAACTTTGACAGATTTGATATATGCAGGCTGTTGCAGCCTGCAGCATCACTTCTGGGCTCTGCTGGTGCAGAGTTTGAAGTTAAAGACCAGAAACCAggtaagtggtctaggtgctatgagccctggaatctcaatctgagtgtcatt Alignment from CESAR aaCCT---------ACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAg ttgacttgagaataaaatgaactgagatcttctccgtttctatgcttcagaaTCTGCTGAAAGCTCGGAAAGTTCTATGGAAGACTCATCTAATGCAGATCAATTTAACTTTGACAGATTTGATATATGCAGGCTGTTGCAGCCTGCAGCATCACTTCTGGGCTCTGCTGGTGCAGAGTTTGAAGTTAAAGACCAGAAACCAggtaagtggtctaggtgctatgagccctggaatctcaatctgagtgtcatt Alignment from Spaln_aa2Genome GAACCTACA---------GAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCA ttgacttgagaataaaatgaactgagatcttctccgtttctatgcttcagAATCTGCTGAAAGCTCGGAAAGTTCTATGGAAGACTCATCTAATGCAGATCAATTTAACTTTGACAGATTTGATATATGCAGGCTGTTGCAGCCTGCAGCATCACTTCTGGGCTCTGCTGGTGCAGAGTTTGAAGTTAAAGACCAGAAACCAGgtaagtggtctaggtgctatgagccctggaatctcaatctgagtgtcatt Alignment from Spaln_nt2Genome TACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG ttgacttgagaataaaatgaactgagatcttctccgtttctatgcttcagaatctgctgaaagCTCGGAAAGTTCTATGGAAGACTCATCTAATGCAGATCAATTTAACTTTGACAGATTTGATATATGCAGGCTGTTGCAGCCTGCAGCATCACTTCTGGGCTCTGCTGGTGCAGAGTTTGAAGTTAAAGACCAGAAACCAGgtaagtggtctaggtgctatgagccctggaatctcaatctgagtgtcatt Alignment from Pairagon AACCTA---------CAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG ttgacttgagaataaaatgaactgagatcttctccgtttctatgcttcagAATCTGCTGAAAGCTCGGAAAGTTCTATGGAAGACTCATCTAATGCAGATCAATTTAACTTTGACAGATTTGATATATGCAGGCTGTTGCAGCCTGCAGCATCACTTCTGGGCTCTGCTGGTGCAGAGTTTGAAGTTAAAGACCAGAAACCAGgtaagtggtctaggtgctatgagccctggaatctcaatctgagtgtcatt Alignment from Exonerate_protein2genome AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG ttgacttgagaataaaatgaactgagatcttctccgtttctatgcttcagaatctgctgAAAGCTCGGAAAGTTCTATGGAAGACTCATCTAATGCAGATCAATTTAACTTTGACAGATTTGATATATGCAGGCTGTTGCAGCCTGCAGCATCACTTCTGGGCTCTGCTGGTGCAGAGTTTGAAGTTAAAGACCAGAAACCAGgtaagtggtctaggtgctatgagccctggaatctcaatctgagtgtcatt Alignment from Exonerate_coding2genome AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG ttgacttgagaataaaatgaactgagatcttctccgtttctatgcttcagaatctgctgAAAGCTCGGAAAGTTCTATGGAAGACTCATCTAATGCAGATCAATTTAACTTTGACAGATTTGATATATGCAGGCTGTTGCAGCCTGCAGCATCACTTCTGGGCTCTGCTGGTGCAGAGTTTGAAGTTAAAGACCAGAAACCAGgtaagtggtctaggtgctatgagccctggaatctcaatctgagtgtcatt Alignment from GeneWise --------GAACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG ttgacttgagaataaaatgaactgagatcttctccgtttctatgcttcagAATCTGCTGAAAGCTCGGAAAGTTCTATGGAAGACTCATCTAATGCAGATCAATTTAACTTTGACAGATTTGATATATGCAGGCTGTTGCAGCCTGCAGCATCACTTCTGGGCTCTGCTGGTGCAGAGTTTGAAGTTAAAGACCAGAAACCAGgtaagtggtctaggtgctatgagccctggaatctcaatctgagtgtcatt #### Btaf1_ID7222_5 --> 2 - 0 Original Alignment gtGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT ttatgtgtacatggttcaagcatggagtttctggcctcttgttctcccaggtGAAGCGGGCCCTAAGGAACGAATAGCACAACACCAGCGCTTATTACAGAAGGAGCTTGGACTTAATATGGGGCATGAAGCTATAGGCATGAGTTGTGAAGAACTTTTTAATGATGAAGATTTGGATTATACACCAACACCGACAGCCCTTGTGAACAGACAGTCAgtgtgtaagagcacaatgtcaccaacttctacagcttcacattatcatca Alignment from CESAR gtGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT ttatgtgtacatggttcaagcatggagtttctggcctcttgttctcccaggtGAAGCGGGCCCTAAGGAACGAATAGCACAACACCAGCGCTTATTACAGAAGGAGCTTGGACTTAATATGGGGCATGAAGCTATAGGCATGAGTTGTGAAGAACTTTTTAATGATGAAGATTTGGATTATACACCAACACCGACAGCCCTTGTGAACAGACAGTCAgtgtgtaagagcacaatgtcaccaacttctacagcttcacattatcatca Alignment from Spaln_aa2Genome GGTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATC ttatgtgtacatggttcaagcatggagtttctggcctcttgttctcccagGTGAAGCGGGCCCTAAGGAACGAATAGCACAACACCAGCGCTTATTACAGAAGGAGCTTGGACTTAATATGGGGCATGAAGCTATAGGCATGAGTTGTGAAGAACTTTTTAATGATGAAGATTTGGATTATACACCAACACCGACAGCCCTTGTGAACAGACAGTCAgtgtgtaagagcacaatgtcaccaacttctacagcttcacattatcatca Alignment from Spaln_nt2Genome GTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT ttatgtgtacatggttcaagcatggagtttctggcctcttgttctcccagGTGAAGCGGGCCCTAAGGAACGAATAGCACAACACCAGCGCTTATTACAGAAGGAGCTTGGACTTAATATGGGGCATGAAGCTATAGGCATGAGTTGTGAAGAACTTTTTAATGATGAAGATTTGGATTATACACCAACACCGACAGCCCTTGTGAACAGACAGTCAgtgtgtaagagcacaatgtcaccaacttctacagcttcacattatcatca Alignment from Pairagon GTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT ttatgtgtacatggttcaagcatggagtttctggcctcttgttctcccagGTGAAGCGGGCCCTAAGGAACGAATAGCACAACACCAGCGCTTATTACAGAAGGAGCTTGGACTTAATATGGGGCATGAAGCTATAGGCATGAGTTGTGAAGAACTTTTTAATGATGAAGATTTGGATTATACACCAACACCGACAGCCCTTGTGAACAGACAGTCAgtgtgtaagagcacaatgtcaccaacttctacagcttcacattatcatca Alignment from Exonerate_protein2genome GTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT ttatgtgtacatggttcaagcatggagtttctggcctcttgttctcccagGTGAAGCGGGCCCTAAGGAACGAATAGCACAACACCAGCGCTTATTACAGAAGGAGCTTGGACTTAATATGGGGCATGAAGCTATAGGCATGAGTTGTGAAGAACTTTTTAATGATGAAGATTTGGATTATACACCAACACCGACAGCCCTTGTGAACAGACAGTCAgtgtgtaagagcacaatgtcaccaacttctacagcttcacattatcatca Alignment from Exonerate_coding2genome GTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT ttatgtgtacatggttcaagcatggagtttctggcctcttgttctcccagGTGAAGCGGGCCCTAAGGAACGAATAGCACAACACCAGCGCTTATTACAGAAGGAGCTTGGACTTAATATGGGGCATGAAGCTATAGGCATGAGTTGTGAAGAACTTTTTAATGATGAAGATTTGGATTATACACCAACACCGACAGCCCTTGTGAACAGACAGTCAgtgtgtaagagcacaatgtcaccaacttctacagcttcacattatcatca Alignment from GeneWise -------------------------GAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT ttatgtgtacatggttcaagcatggagTTTCTGGCCTCTTGTTCTCCCAGGTGAAGCGGGCCCTAAGGAACGAATAGCACAACACCAGCGCTTATTACAGAAGGAGCTTGGACTTAATATGGGGCATGAAGCTATAGGCATGAGTTGTGAAGAACTTTTTAATGATGAAGATTTGGATTATACACCAACACCGACAGCCCTTGTGAACAGACAGTCAgtgtgtaagagcacaatgtcaccaacttctacagcttcacattatcatca #### Btaf1_ID7226_9 --> 0 - 0 Original Alignment GTTCGACATGGGGCAGGTACTGGACTCAGAGAAATTCTTAAAGCTCATGGGAAAAGTGGTGGTAAAATGGGAGACAGCACTTTAGAGGAG cagttctctagctaattagtattagttcttaaagatggaaattttcacagGTTCGACATGGGGCAGGAACTGGACTCAGAGAAATTCTAAAGGCTCATGGGAAACGAGGTGGTAAAATGGGAGACAGCACTTTGGAGGAGgtggggggaactggactcagaaagattctagaggctcatgggagacaaga Alignment from CESAR GTTCGACATGGGGCAGGTACTGGACTCAGAGAAATTCTTAAAGCTCATGGGAAAAGTGGTGGTAAAATGGGAGACAGCACTTTAGAGGAG cagttctctagctaattagtattagttcttaaagatggaaattttcacagGTTCGACATGGGGCAGGAACTGGACTCAGAGAAATTCTAAAGGCTCATGGGAAACGAGGTGGTAAAATGGGAGACAGCACTTTGGAGGAGgtggggggaactggactcagaaagattctagaggctcatgggagacaaga Alignment from Spaln_aa2Genome GGTTCGACATGGGGCAGGTACTGGACTCAGAGAAATTCTTAAAGCTCATGGGAAAAGTGGTGGTAAAATGGGAGACAGCACTTTAGAGGA cagttctctagctaattagtattagttcttaaagatggaaattttcacagGTTCGACATGGGGCAGGAACTGGACTCAGAGAAATTCTAAAGGCTCATGGGAAACGAGGTGGTAAAATGGGAGACAGCACTTTGGAGGAGgtggggggaactggactcagaaagattctagaggctcatgggagacaaga Alignment from Spaln_nt2Genome GTTCGACATGG- GGCAGGTACTGGACTCA--GAGAAATTCTTAAAGCTCATGGGAAAAGTGG cagttctctagctaattagtattagttcttaaagatggaaattttcacagGTTCGACATGGGgcaggaactggactcagagaaattctaaaggctcatgggaaacgaggtggtaaaatgggagacagcactttggaggagGTGGGGGGAACTGGACTCAGAAAGATTCTAGAGGCTCATGGGAGACAAGA Alignment from Pairagon GTTCGACATGGGGCAGGTACTGGACTCAGAGAAATTCTTAAAGCTCATGGGAAAAGTGGTGGTAAAATGGGAGACAGCACTTTAGAGGA--------------------------------------------------- cagttctctagctaattagtattagttcttaaagatggaaattttcacagGTTCGACATGGGGCAGGAACTGGACTCAGAGAAATTCTAAAGGCTCATGGGAAACGAGGTGGTAAAATGGGAGACAGCACTTTGGAGGAGGTGGGGGGAACTGGACTCAGAAAGATTCTAGAGGCTCATGGGAGACAAGA Alignment from Exonerate_protein2genome GTTCGACATGGGGCAGGTACTGGACTCAGAGAAATTCTTAAAGCTCATGGGAAAAGTGGTGGTAAAATGGGAGACAGCACTTTAGAGGAG cagttctctagctaattagtattagttcttaaagatggaaattttcacagGTTCGACATGGGGCAGGAACTGGACTCAGAGAAATTCTAAAGGCTCATGGGAAACGAGGTGGTAAAATGGGAGACAGCACTTTGGAGGAGgtggggggaactggactcagaaagattctagaggctcatgggagacaaga Alignment from Exonerate_coding2genome GTTCGACATGGGGCAGGTACTGGACTCAGAGAAATTCTTAAAGCTCATGGGAAAAGTGGTGGTAAAATGGGAGACAGCACTTTAGAGGAG cagttctctagctaattagtattagttcttaaagatggaaattttcacagGTTCGACATGGGGCAGGAACTGGACTCAGAGAAATTCTAAAGGCTCATGGGAAACGAGGTGGTAAAATGGGAGACAGCACTTTGGAGGAGgtggggggaactggactcagaaagattctagaggctcatgggagacaaga Alignment from GeneWise GTTCGACATGGGGCAGGTACTGGACTCAGAGAAATTCTTAAAGCTCATGGGAAAAGTGGTGGTAAAATGGGAGACAGCACTTTAGAGGAG cagttctctagctaattagtattagttcttaaagatggaaattttcacagGTTCGACATGGGGCAGGAACTGGACTCAGAGAAATTCTAAAGGCTCATGGGAAACGAGGTGGTAAAATGGGAGACAGCACTTTGGAGGAGgtggggggaactggactcagaaagattctagaggctcatgggagacaaga #### Btaf1_ID7227_10 --> 0 - 0 Original Alignment ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA gccttctctagtacagagttaacataagttaacaaaaattctccaaacagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaaaaaaagctttggatgtacataccccctctatatgactctggctcct Alignment from CESAR ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA gccttctctagtacagagttaacataagttaacaaaaattctccaaacagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaaaaaaagctttggatgtacataccccctctatattgtacatctgtgt Alignment from Spaln_aa2Genome GATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGA gccttctctagtacagagttaacataagttaacaaaaattctccaaacagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaaaaaaagctttggatgtacataccccctctatatgactctggctcct Alignment from Spaln_nt2Genome AGATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA gccttctctagtacagagttaacataagttaacaaaaattctccaaacAGATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaaaaaaagctttggatgtacataccccctctatatgactctggctcct Alignment from Pairagon -------------------------------------AGATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA gccttctctagTACAGAGTTAACATAAGTTAACAAAAATTCTCCAAACAGATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaaaaaaagctttggatgtacataccccctctatatgactctggctcct Alignment from Exonerate_protein2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA gccttctctagtacagagttaacataagttaacaaaaattctccaaacagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaaaaaaagctttggatgtacataccccctctatatgactctggctcct Alignment from Exonerate_coding2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA gccttctctagtacagagttaacataagttaacaaaaattctccaaacagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaaaaaaagctttggatgtacataccccctctatatgactctggctcct Alignment from GeneWise ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA gccttctctagtacagagttaacataagttaacaaaaattctccaaacagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaaaaaaagctttggatgtacataccccctctatatgactctggctcct #### Btaf1_ID7229_12 --> 0 - 0 Original Alignment GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG cactaacagttcggcagttaagttcacagatgtttgctttgttttctcagGATGTGATTAATACATTACTACCTAAGGTCTTGACACGGATTATTGAAGCGCTCCAGGACCTAGATGATGATATTAGAGCTGTTGCTGCAGCTTCCCTGGTTCCTGTAGTAGAAAGCTTAGTCTACCTTCAGGCCCAAAAGgtgagtaaacagactggggtccagtcctcctagtagacatgacattatct Alignment from CESAR GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG cactaacagttcggcagttaagttcacagatgtttgctttgttttctcagGATGTGATTAATACATTACTACCTAAGGTCTTGACACGGATTATTGAAGCGCTCCAGGACCTAGATGATGATATTAGAGCTGTTGCTGCAGCTTCCCTGGTTCCTGTAGTAGAAAGCTTAGTCTACCTTCAGGCCCAAAAGgtgagtaaacagactggggtccagtcctcctagtagacatgacattatct Alignment from Spaln_aa2Genome GGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAA cactaacagttcggcagttaagttcacagatgtttgctttgttttctcagGATGTGATTAATACATTACTACCTAAGGTCTTGACACGGATTATTGAAGCGCTCCAGGACCTAGATGATGATATTAGAGCTGTTGCTGCAGCTTCCCTGGTTCCTGTAGTAGAAAGCTTAGTCTACCTTCAGGCCCAAAAGgtgagtaaacagactggggtccagtcctcctagtagacatgacattatct Alignment from Spaln_nt2Genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG cactaacagttcggcagttaagttcacagatgtttgctttgttttctcagGATGTGATTAATACATTACTACCTAAGGTCTTGACACGGATTATTGAAGCGCTCCAGGACCTAGATGATGATATTAGAGCTGTTGCTGCAGCTTCCCTGGTTCCTGTAGTAGAAAGCTTAGTCTACCTTCAGGCCCAAAAGgtgagtaaacagactggggtccagtcctcctagtagacatgacattatct Alignment from Pairagon GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG cactaacagttcggcagttaagttcacagatgtttgctttgttttctcagGATGTGATTAATACATTACTACCTAAGGTCTTGACACGGATTATTGAAGCGCTCCAGGACCTAGATGATGATATTAGAGCTGTTGCTGCAGCTTCCCTGGTTCCTGTAGTAGAAAGCTTAGTCTACCTTCAGGCCCAAAAGgtgagtaaacagactggggtccagtcctcctagtagacatgacattatct Alignment from Exonerate_protein2genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG cactaacagttcggcagttaagttcacagatgtttgctttgttttctcagGATGTGATTAATACATTACTACCTAAGGTCTTGACACGGATTATTGAAGCGCTCCAGGACCTAGATGATGATATTAGAGCTGTTGCTGCAGCTTCCCTGGTTCCTGTAGTAGAAAGCTTAGTCTACCTTCAGGCCCAAAAGgtgagtaaacagactggggtccagtcctcctagtagacatgacattatct Alignment from Exonerate_coding2genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG cactaacagttcggcagttaagttcacagatgtttgctttgttttctcagGATGTGATTAATACATTACTACCTAAGGTCTTGACACGGATTATTGAAGCGCTCCAGGACCTAGATGATGATATTAGAGCTGTTGCTGCAGCTTCCCTGGTTCCTGTAGTAGAAAGCTTAGTCTACCTTCAGGCCCAAAAGgtgagtaaacagactggggtccagtcctcctagtagacatgacattatct Alignment from GeneWise GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG cactaacagttcggcagttaagttcacagatgtttgctttgttttctcagGATGTGATTAATACATTACTACCTAAGGTCTTGACACGGATTATTGAAGCGCTCCAGGACCTAGATGATGATATTAGAGCTGTTGCTGCAGCTTCCCTGGTTCCTGTAGTAGAAAGCTTAGTCTACCTTCAGGCCCAAAAGgtgagtaaacagactggggtccagtcctcctagtagacatgacattatct #### Btaf1_ID7233_15 --> 0 - 0 Original Alignment AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataatatactggattccatctagcactctgcatggctttttcctagAACTCCTCACCTTGGCTGATTCCTGTCTTGTCAGATATGTTAAGACACAGCTTTAAGTGTGGTGTGTTGGAGAGTACTCAGGAAATTCTGGATCTCATTCATAAGgtgagggacaagaatccgaatctgagaggtcttcaataacagttacagta Alignment from CESAR AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataatatactggattccatctagcactctgcatggctttttcctagAACTCCTCACCTTGGCTGATTCCTGTCTTGTCAGATATGTTAAGACACAGCTTTAAGTGTGGTGTGTTGGAGAGTACTCAGGAAATTCTGGATCTCATTCATAAGgtgagggacaagaatccgaatctgagaggtcttcaataacagttacagta Alignment from Spaln_aa2Genome GAACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAA atgtataatatactggattccatctagcactctgcatggctttttcctagAACTCCTCACCTTGGCTGATTCCTGTCTTGTCAGATATGTTAAGACACAGCTTTAAGTGTGGTGTGTTGGAGAGTACTCAGGAAATTCTGGATCTCATTCATAAGgtgagggacaagaatccgaatctgagaggtcttcaataacagttacagta Alignment from Spaln_nt2Genome AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataatatactggattccatctagcactctgcatggctttttcctagAACTCCTCACCTTGGCTGATTCCTGTCTTGTCAGATATGTTAAGACACAGCTTTAAGTGTGGTGTGTTGGAGAGTACTCAGGAAATTCTGGATCTCATTCATAAGgtgagggacaagaatccgaatctgagaggtcttcaataacagttacagta Alignment from Pairagon AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataatatactggattccatctagcactctgcatggctttttcctagAACTCCTCACCTTGGCTGATTCCTGTCTTGTCAGATATGTTAAGACACAGCTTTAAGTGTGGTGTGTTGGAGAGTACTCAGGAAATTCTGGATCTCATTCATAAGgtgagggacaagaatccgaatctgagaggtcttcaataacagttacagta Alignment from Exonerate_protein2genome AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataatatactggattccatctagcactctgcatggctttttcctagAACTCCTCACCTTGGCTGATTCCTGTCTTGTCAGATATGTTAAGACACAGCTTTAAGTGTGGTGTGTTGGAGAGTACTCAGGAAATTCTGGATCTCATTCATAAGgtgagggacaagaatccgaatctgagaggtcttcaataacagttacagta Alignment from Exonerate_coding2genome AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataatatactggattccatctagcactctgcatggctttttcctagAACTCCTCACCTTGGCTGATTCCTGTCTTGTCAGATATGTTAAGACACAGCTTTAAGTGTGGTGTGTTGGAGAGTACTCAGGAAATTCTGGATCTCATTCATAAGgtgagggacaagaatccgaatctgagaggtcttcaataacagttacagta Alignment from GeneWise AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataatatactggattccatctagcactctgcatggctttttcctagAACTCCTCACCTTGGCTGATTCCTGTCTTGTCAGATATGTTAAGACACAGCTTTAAGTGTGGTGTGTTGGAGAGTACTCAGGAAATTCTGGATCTCATTCATAAGgtgagggacaagaatccgaatctgagaggtcttcaataacagttacagta #### Btaf1_ID7242_21 --> 2 - 0 Original Alignment gaTCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatataattctccccctcacccccaggaTCCAACTCAGAAAAGGATGGAATGTACCACACGGTCACAAAGCACAGGGGAATCATGTCCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAAGCAATTAAAGCCCAAATAGCTGACCTACCTGCAGGCAGTAGTGGGACTATCCTAGTGGAACTTGATGAGgtaagtggacagggttgttcccagagaccagaagttgtgcggatggatcc Alignment from CESAR gaTCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatataattctccccctcacccccaggaTCCAACTCAGAAAAGGATGGAATGTACCACACGGTCACAAAGCACAGGGGAATCATGTCCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAAGCAATTAAAGCCCAAATAGCTGACCTACCTGCAGGCAGTAGTGGGACTATCCTAGTGGAACTTGATGAGgtaagtggacagggttgttcccagagaccagaagttgtgcggatggatcc Alignment from Spaln_aa2Genome GGATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGA aactgtaatatttttctagcacaggatataattctccccctcacccccagGATCCAACTCAGAAAAGGATGGAATGTACCACACGGTCACAAAGCACAGGGGAATCATGTCCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAAGCAATTAAAGCCCAAATAGCTGACCTACCTGCAGGCAGTAGTGGGACTATCCTAGTGGAACTTGATGAGgtaagtggacagggttgttcccagagaccagaagttgtgcggatggatcc Alignment from Spaln_nt2Genome GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatataattctccccctcacccccagGATCCAACTCAGAAAAGGATGGAATGTACCACACGGTCACAAAGCACAGGGGAATCATGTCCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAAGCAATTAAAGCCCAAATAGCTGACCTACCTGCAGGCAGTAGTGGGACTATCCTAGTGGAACTTGATGAGgtaagtggacagggttgttcccagagaccagaagttgtgcggatggatcc Alignment from Pairagon GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatataattctccccctcacccccagGATCCAACTCAGAAAAGGATGGAATGTACCACACGGTCACAAAGCACAGGGGAATCATGTCCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAAGCAATTAAAGCCCAAATAGCTGACCTACCTGCAGGCAGTAGTGGGACTATCCTAGTGGAACTTGATGAGgtaagtggacagggttgttcccagagaccagaagttgtgcggatggatcc Alignment from Exonerate_protein2genome GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatataattctccccctcacccccagGATCCAACTCAGAAAAGGATGGAATGTACCACACGGTCACAAAGCACAGGGGAATCATGTCCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAAGCAATTAAAGCCCAAATAGCTGACCTACCTGCAGGCAGTAGTGGGACTATCCTAGTGGAACTTGATGAGgtaagtggacagggttgttcccagagaccagaagttgtgcggatggatcc Alignment from Exonerate_coding2genome GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatataattctccccctcacccccagGATCCAACTCAGAAAAGGATGGAATGTACCACACGGTCACAAAGCACAGGGGAATCATGTCCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAAGCAATTAAAGCCCAAATAGCTGACCTACCTGCAGGCAGTAGTGGGACTATCCTAGTGGAACTTGATGAGgtaagtggacagggttgttcccagagaccagaagttgtgcggatggatcc Alignment from GeneWise GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatataattctccccctcacccccagGATCCAACTCAGAAAAGGATGGAATGTACCACACGGTCACAAAGCACAGGGGAATCATGTCCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAAGCAATTAAAGCCCAAATAGCTGACCTACCTGCAGGCAGTAGTGGGACTATCCTAGTGGAACTTGATGAGgtaagtggacagggttgttcccagagaccagaagttgtgcggatggatcc #### Btaf1_ID7254_33 --> 0 - 0 Original Alignment GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG cctagttcctgtccatttaaagtttgcacctcggtttccccttcctgtagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtaaagatgagatttactttcaccattattgtaacactaatgtctagtgc Alignment from CESAR GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG cctagttcctgtccatttaaagtttgcacctcggtttccccttcctgtagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtaaagatgagatttactttcaccattattgtaacactaatgtctagtgc Alignment from Spaln_aa2Genome GGTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCA cctagttcctgtccatttaaagtttgcacctcggtttccccttcctgtagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtaaagatgagatttactttcaccattattgtaacactaatgtctagtgc Alignment from Spaln_nt2Genome GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG cctagttcctgtccatttaaagtttgcacctcggtttccccttcctgtagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtaaagatgagatttactttcaccattattgtaacactaatgtctagtgc Alignment from Pairagon GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG cctagttcctgtccatttaaagtttgcacctcggtttccccttcctgtagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtaaagatgagatttactttcaccattattgtaacactaatgtctagtgc Alignment from Exonerate_protein2genome GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAGGCG cctagttcctgtccatttaaagtttgcacctcggtttccccttcctgtagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAG---gtaaagatgagatttactttcaccattattgtaacactaatgtctag Alignment from Exonerate_coding2genome GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAGGCG cctagttcctgtccatttaaagtttgcacctcggtttccccttcctgtagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAG---gtaaagatgagatttactttcaccattattgtaacactaatgtctag Alignment from GeneWise GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG cctagttcctgtccatttaaagtttgcacctcggtttccccttcctgtagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtaaagatgagatttactttcaccattattgtaacactaatgtctagtgc #### Btaf1_ID7257_36 --> 1 - 0 Original Alignment gTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agatccaccactgccagccccactgtactgactcggctctggtgtcctaggTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATCTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtgagttcttcctctctatggcattaacattgggcaaataggggtactca Alignment from CESAR gTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agatccaccactgccagccccactgtactgactcggctctggtgtcctaggTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATCTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtgagttcttcctctctatggcattaacattgggcaaataggggtactca Alignment from Spaln_aa2Genome GGTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCA agatccaccactgccagccccactgtactgactcggctctggtgtcctagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATCTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtgagttcttcctctctatggcattaacattgggcaaataggggtactca Alignment from Spaln_nt2Genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agatccaccactgccagccccactgtactgactcggctctggtgtcctagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATCTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtgagttcttcctctctatggcattaacattgggcaaataggggtactca Alignment from Pairagon GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agatccaccactgccagccccactgtactgactcggctctggtgtcctagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATCTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtgagttcttcctctctatggcattaacattgggcaaataggggtactca Alignment from Exonerate_protein2genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agatccaccactgccagccccactgtactgactcggctctggtgtcctagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATCTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtgagttcttcctctctatggcattaacattgggcaaataggggtactca Alignment from Exonerate_coding2genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agatccaccactgccagccccactgtactgactcggctctggtgtcctagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATCTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtgagttcttcctctctatggcattaacattgggcaaataggggtactca Alignment from GeneWise GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agatccaccactgccagccccactgtactgactcggctctggtgtcctagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATCTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtgagttcttcctctctatggcattaacattgggcaaataggggtactca #### Btrc_ID9463_12 --> 1 - 2 Original Alignment gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg gcctagttattgagaagcaacctactttctctgtctcctggcttctacaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCAAGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATgggttggtttgctggtaatatcttatgggcagagaaagaggttgaagacaca Alignment from CESAR gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg gcctagttattgagaagcaacctactttctctgtctcctggcttctacaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCAAGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATgggttggtttgctggtaatatcttatgggcagagaaagaggttgaagacaca Alignment from Spaln_aa2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG gcctagttattgagaagcaacctactttctctgtctcctggcttctacagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCAAGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgttggtttgctggtaatatcttatgggcagagaaagaggttgaagacaca Alignment from Spaln_nt2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG gcctagttattgagaagcaacctactttctctgtctcctggcttctacagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCAAGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgttggtttgctggtaatatcttatgggcagagaaagaggttgaagacaca Alignment from Pairagon GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG gcctagttattgagaagcaacctactttctctgtctcctggcttctacagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCAAGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgttggtttgctggtaatatcttatgggcagagaaagaggttgaagacaca Alignment from Exonerate_protein2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG gcctagttattgagaagcaacctactttctctgtctcctggcttctacagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCAAGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgttggtttgctggtaatatcttatgggcagagaaagaggttgaagacaca Alignment from Exonerate_coding2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG gcctagttattgagaagcaacctactttctctgtctcctggcttctacagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCAAGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgttggtttgctggtaatatcttatgggcagagaaagaggttgaagacaca Alignment from GeneWise GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG gcctagttattgagaagcaacctactttctctgtctcctggcttctacagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCAAGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATTGTAAGCAGAACGTATGATGGgttggtttgctggtaatatcttatgggcagagaaagaggttgaagacaca #### Btrc_ID9464_13 --> 1 - 0 Original Alignment gAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG tccctatgccacattatagaatgtaaatagacctctccttcatcctacaggAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACCCTCTGTCTGCGGACACTTGTGgtatgtcttgcccatagtgttgactggacatgtgctaatatttctgcacc Alignment from CESAR gAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG tccctatgccacattatagaatgtaaatagacctctccttcatcctacaggAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACCCTCTGTCTGCGGACACTTGTGgtatgtcttgcccatagtgttgactggacatgtgctaatatttctgcacc Alignment from Spaln_aa2Genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG tccctatgccacattatagaatgtaaatagacctctccttcatcctacagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACCCTCTGTCTGCGGACACTTGTGgtatgtcttgcccatagtgttgactggacatgtgctaatatttctgcacc Alignment from Spaln_nt2Genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG tccctatgccacattatagaatgtaaatagacctctccttcatcctacagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACCCTCTGTCTGCGGACACTTGTGgtatgtcttgcccatagtgttgactggacatgtgctaatatttctgcacc Alignment from Pairagon GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG tccctatgccacattatagaatgtaaatagacctctccttcatcctacagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACCCTCTGTCTGCGGACACTTGTGgtatgtcttgcccatagtgttgactggacatgtgctaatatttctgcacc Alignment from Exonerate_protein2genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG tccctatgccacattatagaatgtaaatagacctctccttcatcctacagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACCCTCTGTCTGCGGACACTTGTGgtatgtcttgcccatagtgttgactggacatgtgctaatatttctgcacc Alignment from Exonerate_coding2genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG tccctatgccacattatagaatgtaaatagacctctccttcatcctacagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACCCTCTGTCTGCGGACACTTGTGgtatgtcttgcccatagtgttgactggacatgtgctaatatttctgcacc Alignment from GeneWise GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG tccctatgccacattatagaatgtaaatagacctctccttcatcctacagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACCCTCTGTCTGCGGACACTTGTGgtatgtcttgcccatagtgttgactggacatgtgctaatatttctgcacc #### C030046E11Rik_ID6297_11 --> 0 - 0 Original Alignment AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cactaccaactttgtgggggcgtgacctatgctgtctttttttcctctagAGCTGGGGTGCAGAAGGCTACCAG---TGGGTGATCAGTGGGTTGGGTTCCCAGCACACAGAGATTGAGATTGATCTAAGGAGTATGGTTAAGGAACCCAGCATTCTTCTGTTTCAATTTATTAAGAGTGTACTT---GTGAATCCTTGTATGgtaagtctaagtacatcctgctttacctgtaccatcaggtaactgcttgt Alignment from CESAR AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cactaccaactttgtgggggcgtgacctatgctgtctttttttcctctagAGCTGGGGTGCAGAAGGCTACCAG---TGGGTGATCAGTGGGTTGGGTTCCCAGCACACAGAGATTGAGATTGATCTAAGGAGTATGGTTAAGGAACCCAGCATTCTTCTGTTTCAATTTATTAAGAGTGTACTT---GTGAATCCTTGTATGgtaagtctaagtacatcctgctttacctgtaccatcaggtaactgcttgt Alignment from Spaln_aa2Genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cactaccaactttgtgggggcgtgacctatgctgtctttttttcctctagAGCTGGGGTGCAGAAGGCTACCAG---TGGGTGATCAGTGGGTTGGGTTCCCAGCACACAGAGATTGAGATTGATCTAAGGAGTATGGTTAAGGAACCCAGCATTCTTCTGTTTCAATTTATTAAGAGTGTACTT---GTGAATCCTTGTATGgtaagtctaagtacatcctgctttacctgtaccatcaggtaactgcttgt Alignment from Spaln_nt2Genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cactaccaactttgtgggggcgtgacctatgctgtctttttttcctctagAGCTGGGGTGCAGAAGGCTACCA---GTGGGTGATCAGTGGGTTGGGTTCCCAGCACACAGAGATTGAGATTGATCTAAGGAGTATGGTTAAGGAACCCAGCATTCTTCTGTTTCAATTTATTAAGAGTGTACT---TGTGAATCCTTGTATGgtaagtctaagtacatcctgctttacctgtaccatcaggtaactgcttgt Alignment from Pairagon AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cactaccaactttgtgggggcgtgacctatgctgtctttttttcctctagAGCTGGGGTGCAGAAGGCTACCA---GTGGGTGATCAGTGGGTTGGGTTCCCAGCACACAGAGATTGAGATTGATCTAAGGAGTATGGTTAAGGAACCCAGCATTCTTCTGTTTCAATTTATTAAGAGTGTACT---TGTGAATCCTTGTATGgtaagtctaagtacatcctgctttacctgtaccatcaggtaactgcttgt Alignment from Exonerate_protein2genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cactaccaactttgtgggggcgtgacctatgctgtctttttttcctctagAGCTGGGGTGCAGAAGGCTACCAG---TGGGTGATCAGTGGGTTGGGTTCCCAGCACACAGAGATTGAGATTGATCTAAGGAGTATGGTTAAGGAACCCAGCATTCTTCTGTTTCAATTTATTAAGAGTGTACTT---GTGAATCCTTGTATGgtaagtctaagtacatcctgctttacctgtaccatcaggtaactgcttgt Alignment from Exonerate_coding2genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cactaccaactttgtgggggcgtgacctatgctgtctttttttcctctagAGCTGGGGTGCAGAAGGCTACCAG---TGGGTGATCAGTGGGTTGGGTTCCCAGCACACAGAGATTGAGATTGATCTAAGGAGTATGGTTAAGGAACCCAGCATTCTTCTGTTTCAATTTATTAAGAGTGTACTT---GTGAATCCTTGTATGgtaagtctaagtacatcctgctttacctgtaccatcaggtaactgcttgt Alignment from GeneWise AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cactaccaactttgtgggggcgtgacctatgctgtctttttttcctctagAGCTGGGGTGCAGAAGGCTACCAG---TGGGTGATCAGTGGGTTGGGTTCCCAGCACACAGAGATTGAGATTGATCTAAGGAGTATGGTTAAGGAACCCAGCATTCTTCTGTTTCAATTTATTAAGAGTGTACTT---GTGAATCCTTGTATGgtaagtctaagtacatcctgctttacctgtaccatcaggtaactgcttgt #### C030046E11Rik_ID6300_14 --> 0 - 0 Original Alignment TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG acctaattaacacttctacaagaggtaatctcatcttcctttccttgaagTTTTCAGCTATTGATAAGCTTGGACAAAATATTGCTGTGGCAGGCAGGTTTGGATTTGCTCACTATTCCCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaagtccttgcatttttctttgccaattaaaactcaggataagcactca Alignment from CESAR TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG acctaattaacacttctacaagaggtaatctcatcttcctttccttgaagTTTTCAGCTATTGATAAGCTTGGACAAAATATTGCTGTGGCAGGCAGGTTTGGATTTGCTCACTATTCCCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaagtccttgcatttttctttgccaattaaaactcaggataagcactca Alignment from Spaln_aa2Genome TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG acctaattaacacttctacaagaggtaatctcatcttcctttccttgaagTTTTCAGCTATTGATAAGCTTGGACAAAATATTGCTGTGGCAGGCAGGTTTGGATTTGCTCACTATTCCCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaagtccttgcatttttctttgccaattaaaactcaggataagcactca Alignment from Spaln_nt2Genome TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG acctaattaacacttctacaagaggtaatctcatcttcctttccttgaagTTTTCAGCTATTGATAAGCTTGGACAAAATATTGCTGTGGCAGGCAGGTTTGGATTTGCTCACTATTCCCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaagtccttgcatttttctttgccaattaaaactcaggataagcactca Alignment from Pairagon TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG acctaattaacacttctacaagaggtaatctcatcttcctttccttgaagTTTTCAGCTATTGATAAGCTTGGACAAAATATTGCTGTGGCAGGCAGGTTTGGATTTGCTCACTATTCCCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaagtccttgcatttttctttgccaattaaaactcaggataagcactca Alignment from Exonerate_protein2genome TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG acctaattaacacttctacaagaggtaatctcatcttcctttccttgaagTTTTCAGCTATTGATAAGCTTGGACAAAATATTGCTGTGGCAGGCAGGTTTGGATTTGCTCACTATTCCCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaagtccttgcatttttctttgccaattaaaactcaggataagcactca Alignment from Exonerate_coding2genome TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG acctaattaacacttctacaagaggtaatctcatcttcctttccttgaagTTTTCAGCTATTGATAAGCTTGGACAAAATATTGCTGTGGCAGGCAGGTTTGGATTTGCTCACTATTCCCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaagtccttgcatttttctttgccaattaaaactcaggataagcactca Alignment from GeneWise TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG acctaattaacacttctacaagaggtaatctcatcttcctttccttgaagTTTTCAGCTATTGATAAGCTTGGACAAAATATTGCTGTGGCAGGCAGGTTTGGATTTGCTCACTATTCCCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaagtccttgcatttttctttgccaattaaaactcaggataagcactca #### C030046E11Rik_ID6310_24 --> 2 - 2 Original Alignment ggGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTcg tatgtgaaacaatgacacatgacatgtttttcccttcatttccttcccagggGACGAGTGTAGCATTGGCTCAACAACAGACCTG---AAAAGTAGCTCCTTGGTAGATGGGGATTGGACAATGGTGGACGAAAACCCCTCCACC---------------CATGAGCTAGAGCACATTTCCATGGACTTGCAAACTAATGGATCTGACAAA---CAATTCCAGCCCcggtatgtttggatggaggctacattcctagtatatgtgaccctcttaatat Alignment from CESAR ggGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTcg tatgtgaaacaatgacacatgacatgtttttcccttcatttccttcccagggGACGAGTGTAGCATTGGCTCAACAACAGACCTG---AAAAGTAGCTCCTTGGTAGATGGGGATTGGACAATGGTGGACGAAAACCCCTCCACC---------------CATGAGCTAGAGCACATTTCCATGGACTTGCAAACTAATGGATCTGACAAA---CAATTCCAGCCCcggtatgtttggatggaggctacattcctagtatatgtgaccctcttaatat Alignment from Spaln_aa2Genome GGGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTCG tatgtgaaacaatgacacatgacatgtttttcccttcatttccttcccagGGGACGAGTGTAGCATTGGCTCAACAACAGACCTGAAAAGT---AGCTCCTTGGTAGATGGGGATTGGACAATGGTGGACGAAAACCCCTCCACC---------------CATGAGCTAGAGCACATTTCCATGGACTTGCAAACTAATGGATCTGACAAA---CAATTCCAGCCCCGgtatgtttggatggaggctacattcctagtatatgtgaccctcttaatat Alignment from Spaln_nt2Genome GGGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTCG tatgtgaaacaatgacacatgacatgtttttcccttcatttccttcccagGGGACGAGTGTAGCATTGGCTCAACAACAGACCTGA---AAAGTAGCTCCTTGGTAGATGGGGATTGGACAATGGTGGACGAAAACCCCTCCACCC---------------ATGAGCTAGAGCACATTTCCATGGACTTGCAAACTAATGGATCTGACAAA---CAATTCCAGCCCCGgtatgtttggatggaggctacattcctagtatatgtgaccctcttaatat Alignment from Pairagon GGGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTCG tatgtgaaacaatgacacatgacatgtttttcccttcatttccttcccagGGGACGAGTGTAGCATTGGCTCAACAACAGACCTGA---AAAGTAGCTCCTTGGTAGATGGGGATTGGACAATGGTGGACGAAAACCCCTCCACCC---------------ATGAGCTAGAGCACATTTCCATGGACTTGCAAACTAATGGATCTGACAAA---CAATTCCAGCCCCGgtatgtttggatggaggctacattcctagtatatgtgaccctcttaatat Alignment from Exonerate_protein2genome GGGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTCG tatgtgaaacaatgacacatgacatgtttttcccttcatttccttcccagGGGACGAGTGTAGCATTGGCTCAACAACAGACCTG---AAAAGTAGCTCCTTGGTAGATGGGGATTGGACAATGGTGGACGAAAACCCCTCCACCCATGAGCTA---------------GAGCACATTTCCATGGACTTGCAAACTAATGGATCTGACAAA---CAATTCCAGCCCCGgtatgtttggatggaggctacattcctagtatatgtgaccctcttaatat Alignment from Exonerate_coding2genome GGGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTCG tatgtgaaacaatgacacatgacatgtttttcccttcatttccttcccagGGGACGAGTGTAGCATTGGCTCAACAACAGACCTG---AAAAGTAGCTCCTTGGTAGATGGGGATTGGACAATGGTGGACGAAAACCCCTCCACCCATGAGCTA---------------GAGCACATTTCCATGGACTTGCAAACTAATGGATCTGACAAA---CAATTCCAGCCCCGgtatgtttggatggaggctacattcctagtatatgtgaccctcttaatat Alignment from GeneWise GGGATGAGTGCAGCATTGGCTCAGCTACAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCTCAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAGGTCCAGCTTCG tatgtgaaacaatgacacatgacatgtttttcccttcatttccttcccagGGGACGAGTGTAGCATTGGCTCAACAACAGACCTG---AAAAGTAGCTCCTTGGTAGATGGGGATTGGACAATGGTGGACGAAAACCCCTCCACC---------------CATGAGCTAGAGCACATTTCCATGGACTTGCAAACTAATGGATCTGACAAA---CAATTCCAGCCCCGgtatgtttggatggaggctacattcctagtatatgtgaccctcttaatat #### Cabp2_ID287_2 --> 0 - 0 Original Alignment GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCT------CAGCTTgtaattacattggccttatccacgattcatgttggactggcactggacat Alignment from CESAR GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCT------CAGCTTgtaattacattggccttatccacgattcatgttggactggcactggacat Alignment from Spaln_aa2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCTCAGCTTGTAATTACATTGGCCTTATCCACGATTCATGTTGGACTGgcactggacat Alignment from Spaln_nt2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAG------CTCAGCTTgtaattacattggccttatccacgattcatgttggactggcactggacat Alignment from Pairagon GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACC----------CAGCAT gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCTCAGCTTgtaattacattggccttatccacgattcatgttggactggcactggacat Alignment from Exonerate_protein2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCTCAGCTTGTAATTACATTGGCCTTATCCACGATTCATGTTGGACTGgcactggacat Alignment from Exonerate_coding2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCTCAGCTTGTAATTACATTGGCCTTATCCACGATTCATGTTGGACTGgcactggacat Alignment from GeneWise GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG gccatattgacacctatatgtggaggtgatttctgtgtgtttggtgacagGTCCGCTGGCAATGGCCTGGATCTCCATTAGGAGGCTCACTTCCCAGCCCAGGTCCAAGAACTGAGGAGCAGGAAGGTTCACAGGGCTACTCAGTCCTTAGTAGTATTGTAGGTCCCACATGTATATTCCTACGACCTACTATAGCT------CAGCTTGTAATTACATTGGCCTTATCCACGATT---CATgttggactggcactgga #### Cabp4_ID342_2 --> 0 - 1 Original Alignment GATCGTGAACTGGGCCCTGAGGAGTTGGAGg aacaatccataattaggctctgcatggactgtatatctttgtctgtgtagGATCGTGAGCTGGGGCCTGAGGAGTTGGAGagtaaatgactcttcctctctatgagaagcctggagttgataaaatatgtt Alignment from CESAR GATCGTGAACTGGGCCCTGAGGAGTTGGAGg aacaatccataattaggctctgcatggactgtatatctttgtctgtgtagGATCGTGAGCTGGGGCCTGAGGAGTTGGAGagtaaatgactcttcctctctatgagaagcctggagttgataaaatatgtt Alignment from Spaln_aa2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG aacaatccataattaggctctgcatggactgtatatctttgtctgtgtagGATCGTGAGCTGGGGCCTGAGGAGTTGGAGAgtaaatgactcttcctctctatgagaagcctggagttgataaaatatgtt Alignment from Spaln_nt2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG aacaatccataattaggctctgcatggactgtatatctttgtctgtgtagGATCGTGAGCTGGGGCCTGAGGAGTTGGAGAgtaaatgactcttcctctctatgagaagcctggagttgataaaatatgtt Alignment from Pairagon GATCGTGAACTGGGCCCTGAGGAGTTGGAGG aacaatccataattaggctctgcatggactgtatatctttgtctgtgtagGATCGTGAGCTGGGGCCTGAGGAGTTGGAGAgtaaatgactcttcctctctatgagaagcctggagttgataaaatatgtt Alignment from Exonerate_protein2genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG aacaatccataattaggctctgcatggactgtatatctttgtctgtgtagGATCGTGAGCTGGGGCCTGAGGAGTTGGAGAgtaaatgactcttcctctctatgagaagcctggagttgataaaatatgtt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATCGTGAACTGGGCCCTGAGGAGTTGGAGG aacaatccataattaggctctgcatggactgtatatctttgtctgtgtagGATCGTGAGCTGGGGCCTGAGGAGTTGGAGAgtaaatgactcttcctctctatgagaagcctggagttgataaaatatgtt #### Cacul1_ID13276_6 --> 2 - 1 Original Alignment ctTTACTTTTAGAAGCCCAGTCAACACCATTTCAGGTCACACCTTCAACTATGGCAAATATTGTGAAAGGCCTGTACACTCTCAGACCAg agtccatctctcctgcattccctttgaccaatgtttgttttctttttaagctTTACTCTTAGAAGCCCAATCTACACCATTTCAGGTCACCCCTTCAACCATGGCAAATATTGTAAAAGGCCTCTACAAAGTCAGACCAggtgagtggcattagtcaacaggcaccatctccaccttgaagacgtttgaa Alignment from CESAR ctTTACTTTTAGAAGCCCAGTCAACACCATTTCAGGTCACACCTTCAACTATGGCAAATATTGTGAAAGGCCTGTACACTCTCAGACCAg agtccatctctcctgcattccctttgaccaatgtttgttttctttttaagctTTACTCTTAGAAGCCCAATCTACACCATTTCAGGTCACCCCTTCAACCATGGCAAATATTGTAAAAGGCCTCTACAAAGTCAGACCAggtgagtggcattagtcaacaggcaccatctccaccttgaagacgtttgaa Alignment from Spaln_aa2Genome CTTTACTTTTAGAAGCCCAGTCAACACCATTTCAGGTCACACCTTCAACTATGGCAAATATTGTGAAAGGCCTGTACACTCTCAGACCAG agtccatctctcctgcattccctttgaccaatgtttgttttctttttaagCTTTACTCTTAGAAGCCCAATCTACACCATTTCAGGTCACCCCTTCAACCATGGCAAATATTGTAAAAGGCCTCTACAAAGTCAGACCAGgtgagtggcattagtcaacaggcaccatctccaccttgaagacgtttgaa Alignment from Spaln_nt2Genome CTTTACTTTTAGAAGCCCAGTCAACACCATTTCAGGTCACACCTTCAACTATGGCAAATATTGTGAAAGGCCTGTACACTCTCAGACCAG agtccatctctcctgcattccctttgaccaatgtttgttttctttttaagCTTTACTCTTAGAAGCCCAATCTACACCATTTCAGGTCACCCCTTCAACCATGGCAAATATTGTAAAAGGCCTCTACAAAGTCAGACCAGgtgagtggcattagtcaacaggcaccatctccaccttgaagacgtttgaa Alignment from Pairagon CTTTACTTTTAGAAGCCCAGTCAACACCATTTCAGGTCACACCTTCAACTATGGCAAATATTGTGAAAGGCCTGTACACTCTCAGACCAG agtccatctctcctgcattccctttgaccaatgtttgttttctttttaagCTTTACTCTTAGAAGCCCAATCTACACCATTTCAGGTCACCCCTTCAACCATGGCAAATATTGTAAAAGGCCTCTACAAAGTCAGACCAGgtgagtggcattagtcaacaggcaccatctccaccttgaagacgtttgaa Alignment from Exonerate_protein2genome CTTTACTTTTAGAAGCCCAGTCAACACCATTTCAGGTCACACCTTCAACTATGGCAAATATTGTGAAAGGCCTGTACACTCTCAGACCAG agtccatctctcctgcattccctttgaccaatgtttgttttctttttaagCTTTACTCTTAGAAGCCCAATCTACACCATTTCAGGTCACCCCTTCAACCATGGCAAATATTGTAAAAGGCCTCTACAAAGTCAGACCAGgtgagtggcattagtcaacaggcaccatctccaccttgaagacgtttgaa Alignment from Exonerate_coding2genome CTTTACTTTTAGAAGCCCAGTCAACACCATTTCAGGTCACACCTTCAACTATGGCAAATATTGTGAAAGGCCTGTACACTCTCAGACCAG agtccatctctcctgcattccctttgaccaatgtttgttttctttttaagCTTTACTCTTAGAAGCCCAATCTACACCATTTCAGGTCACCCCTTCAACCATGGCAAATATTGTAAAAGGCCTCTACAAAGTCAGACCAGgtgagtggcattagtcaacaggcaccatctccaccttgaagacgtttgaa Alignment from GeneWise CTTTACTTTTAGAAGCCCAGTCAACACCATTTCAGGTCACACCTTCAACTATGGCAAATATTGTGAAAGGCCTGTACACTCTCAGACCAG agtccatctctcctgcattccctttgaccaatgtttgttttctttttaagCTTTACTCTTAGAAGCCCAATCTACACCATTTCAGGTCACCCCTTCAACCATGGCAAATATTGTAAAAGGCCTCTACAAAGTCAGACCAGgtgagtggcattagtcaacaggcaccatctccaccttgaagacgtttgaa #### Capn1_ID1364_12 --> 0 - 2 Original Alignment CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCca ctgaccctttgctaattctgtaggtctttgtttttctgtaactgaaacagCTTGCAGGTCAACCTGTGCATTTGAAGTGTGTTTTGTTTCTGACTAATGCATCTCATGCCCAGACAGAACATTTTATCAACCTACGGGAAGTCAGTAAACGTATTCGGTTGCCACCTGGAGAATACATAATTGTACCCTCATCCTTTGAGCCTAACAAGGAAGGCGAATTTCTACTTCGTTTCTTCTCACGGAAGAAGGCTGGGACAcagtgggtcatttttagtcagcatccttccatatgcgggtttgaaccccttt Alignment from CESAR CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCca ctgaccctttgctaattctgtaggtctttgtttttctgtaactgaaacagCTTGCAGGTCAACCTGTGCATTTGAAGTGTGTTTTGTTTCTGACTAATGCATCTCATGCCCAGACAGAACATTTTATCAACCTACGGGAAGTCAGTAAACGTATTCGGTTGCCACCTGGAGAATACATAATTGTACCCTCATCCTTTGAGCCTAACAAGGAAGGCGAATTTCTACTTCGTTTCTTCTCACGGAAGAAGGCTGGGACAcagtgggtcatttttagtcagcatccttccatatgcgggtttgaaccccttt Alignment from Spaln_aa2Genome CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA ctgaccctttgctaattctgtaggtctttgtttttctgtaactgaaacagCTTGCAGGTCAACCTGTGCATTTGAAGTGTGTTTTGTTTCTGACTAATGCATCTCATGCCCAGACAGAACATTTTATCAACCTACGGGAAGTCAGTAAACGTATTCGGTTGCCACCTGGAGAATACATAATTGTACCCTCATCCTTTGAGCCTAACAAGGAAGGCGAATTTCTACTTCGTTTCTTCTCACGGAAGAAGGCTGGGACACAgtgggtcatttttagtcagcatccttccatatgcgggtttgaaccccttt Alignment from Spaln_nt2Genome CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA ctgaccctttgctaattctgtaggtctttgtttttctgtaactgaaacagCTTGCAGGTCAACCTGTGCATTTGAAGTGTGTTTTGTTTCTGACTAATGCATCTCATGCCCAGACAGAACATTTTATCAACCTACGGGAAGTCAGTAAACGTATTCGGTTGCCACCTGGAGAATACATAATTGTACCCTCATCCTTTGAGCCTAACAAGGAAGGCGAATTTCTACTTCGTTTCTTCTCACGGAAGAAGGCTGGGACACAgtgggtcatttttagtcagcatccttccatatgcgggtttgaaccccttt Alignment from Pairagon CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA ctgaccctttgctaattctgtaggtctttgtttttctgtaactgaaacagCTTGCAGGTCAACCTGTGCATTTGAAGTGTGTTTTGTTTCTGACTAATGCATCTCATGCCCAGACAGAACATTTTATCAACCTACGGGAAGTCAGTAAACGTATTCGGTTGCCACCTGGAGAATACATAATTGTACCCTCATCCTTTGAGCCTAACAAGGAAGGCGAATTTCTACTTCGTTTCTTCTCACGGAAGAAGGCTGGGACACAgtgggtcatttttagtcagcatccttccatatgcgggtttgaaccccttt Alignment from Exonerate_protein2genome GTCCCTCGGGAGCTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA ctgaccctttgctaattctgtaggtctttgtttttctgTAACTGAAACAGCTTGCAGGTCAACCTGTGCATTTGAAGTGTGTTTTGTTTCTGACTAATGCATCTCATGCCCAGACAGAACATTTTATCAACCTACGGGAAGTCAGTAAACGTATTCGGTTGCCACCTGGAGAATACATAATTGTACCCTCATCCTTTGAGCCTAACAAGGAAGGCGAATTTCTACTTCGTTTCTTCTCACGGAAGAAGGCTGGGACACAgtgggtcatttttagtcagcatccttccatatgcgggtttgaaccccttt Alignment from Exonerate_coding2genome GTCCCTCGGGAGCTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA ctgaccctttgctaattctgtaggtctttgtttttctgTAACTGAAACAGCTTGCAGGTCAACCTGTGCATTTGAAGTGTGTTTTGTTTCTGACTAATGCATCTCATGCCCAGACAGAACATTTTATCAACCTACGGGAAGTCAGTAAACGTATTCGGTTGCCACCTGGAGAATACATAATTGTACCCTCATCCTTTGAGCCTAACAAGGAAGGCGAATTTCTACTTCGTTTCTTCTCACGGAAGAAGGCTGGGACACAgtgggtcatttttagtcagcatccttccatatgcgggtttgaaccccttt Alignment from GeneWise CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA ctgaccctttgctaattctgtaggtctttgtttttctgtaactgaaacagCTTGCAGGTCAACCTGTGCATTTGAAGTGTGTTTTGTTTCTGACTAATGCATCTCATGCCCAGACAGAACATTTTATCAACCTACGGGAAGTCAGTAAACGTATTCGGTTGCCACCTGGAGAATACATAATTGTACCCTCATCCTTTGAGCCTAACAAGGAAGGCGAATTTCTACTTCGTTTCTTCTCACGGAAGAAGGCTGGGACACAgtgggtcatttttagtcagcatccttccatatgcgggtttgaaccccttt #### Capn1_ID1368_8 --> 1 - 2 Original Alignment cTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCtg ctctacttgtgtccacactggtattttctatcaatatattttcttccaagcCCATATGAGTGGAACAAAGTGGATCCTTATGAACAAGAGGAACCAAGAGTTAAGATGGAAGATGGTGAATTTtggtaactaattagattccttccctggcacacccttctgtggtagtcacttt Alignment from CESAR cTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCtg ctctacttgtgtccacactggtattttctatcaatatattttcttccaagcCCATATGAGTGGAACAAAGTGGATCCTTATGAACAAGAGGAACCAAGAGTTAAGATGGAAGATGGTGAATTTtggtaactaattagattccttccctggcacacccttctgtggtagctgactc Alignment from Spaln_aa2Genome CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG ctctacttgtgtccacactggtattttctatcaatatattttcttccaagCCCATATGAGTGGAACAAAGTGGATCCTTATGAACAAGAGGAACCAAGAGTTAAGATGGAAGATGGTGAATTTTGgtaactaattagattccttccctggcacacccttctgtggtagtcacttt Alignment from Spaln_nt2Genome CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG ctctacttgtgtccacactggtattttctatcaatatattttcttccaagCCCATATGAGTGGAACAAAGTGGATCCTTATGAACAAGAGGAACCAAGAGTTAAGATGGAAGATGGTGAATTTTGgtaactaattagattccttccctggcacacccttctgtggtagtcacttt Alignment from Pairagon CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG ctctacttgtgtccacactggtattttctatcaatatattttcttccaagCCCATATGAGTGGAACAAAGTGGATCCTTATGAACAAGAGGAACCAAGAGTTAAGATGGAAGATGGTGAATTTTGgtaactaattagattccttccctggcacacccttctgtggtagtcacttt Alignment from Exonerate_protein2genome CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG ctctacttgtgtccacactggtattttctatcaatatattttcttccaagCCCATATGAGTGGAACAAAGTGGATCCTTATGAACAAGAGGAACCAAGAGTTAAGATGGAAGATGGTGAATTTTGgtaactaattagattccttccctggcacacccttctgtggtagtcacttt Alignment from Exonerate_coding2genome AGCTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG ctctacttgtgtccacactggtattttctatcaatatattttcttccaAGCCCATATGAGTGGAACAAAGTGGATCCTTATGAACAAGAGGAACCAAGAGTTAAGATGGAAGATGGTGAATTTTGgtaactaattagattccttccctggcacacccttctgtggtagtcacttt Alignment from GeneWise CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG ctctacttgtgtccacactggtattttctatcaatatattttcttccaagCCCATATGAGTGGAACAAAGTGGATCCTTATGAACAAGAGGAACCAAGAGTTAAGATGGAAGATGGTGAATTTTGgtaactaattagattccttccctggcacacccttctgtggtagtcacttt #### Capn1_ID1374_3 --> 2 - 0 Original Alignment ggGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagacgaagcagtacttttggtttatttatttattttctgtaggtGAGTGCTGGCTCCTGGCTGCCATAGCTTCCCTTACCCTCAATGAGGCTATCTTACACCGAGTTATTCCCTATGGCCAAAGCTTCCAGGACGGTTATGCTGGCATCTTCCATTCCCAAgtaagattttcattggtcatcctttgcaggggcctagtgtgggtacatcc Alignment from CESAR ggGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagacgaagcagtacttttggtttatttatttattttctgtaggtGAGTGCTGGCTCCTGGCTGCCATAGCTTCCCTTACCCTCAATGAGGCTATCTTACACCGAGTTATTCCCTATGGCCAAAGCTTCCAGGACGGTTATGCTGGCATCTTCCATTCCCAAgtaagattttcattggtcatcctttgcaggggcctagtgtgggtacatcc Alignment from Spaln_aa2Genome GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagacgaagcagtacttttggtttatttatttattttctgtagGTGAGTGCTGGCTCCTGGCTGCCATAGCTTCCCTTACCCTCAATGAGGCTATCTTACACCGAGTTATTCCCTATGGCCAAAGCTTCCAGGACGGTTATGCTGGCATCTTCCATTCCCAAgtaagattttcattggtcatcctttgcaggggcctagtgtgggtacatcc Alignment from Spaln_nt2Genome GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagacgaagcagtacttttggtttatttatttattttctgtagGTGAGTGCTGGCTCCTGGCTGCCATAGCTTCCCTTACCCTCAATGAGGCTATCTTACACCGAGTTATTCCCTATGGCCAAAGCTTCCAGGACGGTTATGCTGGCATCTTCCATTCCCAAgtaagattttcattggtcatcctttgcaggggcctagtgtgggtacatcc Alignment from Pairagon GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagacgaagcagtacttttggtttatttatttattttctgtagGTGAGTGCTGGCTCCTGGCTGCCATAGCTTCCCTTACCCTCAATGAGGCTATCTTACACCGAGTTATTCCCTATGGCCAAAGCTTCCAGGACGGTTATGCTGGCATCTTCCATTCCCAAgtaagattttcattggtcatcctttgcaggggcctagtgtgggtacatcc Alignment from Exonerate_protein2genome GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagacgaagcagtacttttggtttatttatttattttctgtagGTGAGTGCTGGCTCCTGGCTGCCATAGCTTCCCTTACCCTCAATGAGGCTATCTTACACCGAGTTATTCCCTATGGCCAAAGCTTCCAGGACGGTTATGCTGGCATCTTCCATTCCCAAgtaagattttcattggtcatcctttgcaggggcctagtgtgggtacatcc Alignment from Exonerate_coding2genome cctgccacagacgaagcagtacttttggtttatttatttattttctgtaggtgagtgctggctcctggctgccatagcttcccttaccctcaatgaggctatcttacaccgagttattccctatggccaaagcttccaggacggttatgctggcatcttccattcccaagtaagattttcattggtcatcctttgcaggggcctagtgtgggtacatcc Alignment from GeneWise GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagacgaagcagtacttttggtttatttatttattttctgtagGTGAGTGCTGGCTCCTGGCTGCCATAGCTTCCCTTACCCTCAATGAGGCTATCTTACACCGAGTTATTCCCTATGGCCAAAGCTTCCAGGACGGTTATGCTGGCATCTTCCATTCCCAAgtaagattttcattggtcatcctttgcaggggcctagtgtgggtacatcc #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg ataaggaggaacaatatgaaggatctgatgagccagatgacccaccctaggcTTCCCTGGGGCAGAAGTCACCTTGTGTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAGAGCCCTggtagggtattgcttccaaatgcacccttatcctacattggagcatggttg Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg ataaggaggaacaatatgaaggatctgatgagccagatgacccaccctaggcTTCCCTGGGGCAGAAGTCACCTTGTGTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAGAGCCCTggtagggtattgcttccaaatgcacccttatcctacattggagcatggttg Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ataaggaggaacaatatgaaggatctgatgagccagatgacccaccctagGCTTCCCTGGGGCAGAAGTCACCTTGTGTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAGAGCCCTGgtagggtattgcttccaaatgcacccttatcctacattggagcatggttg Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ataaggaggaacaatatgaaggatctgatgagccagatgacccaccctagGCTTCCCTGGGGCAGAAGTCACCTTGTGTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAGAGCCCTGgtagggtattgcttccaaatgcacccttatcctacattggagcatggttg Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ataaggaggaacaatatgaaggatctgatgagccagatgacccaccctagGCTTCCCTGGGGCAGAAGTCACCTTGTGTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAGAGCCCTGgtagggtattgcttccaaatgcacccttatcctacattggagcatggttg Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ataaggaggaacaatatgaaggatctgatgagccagatgacccaccctagGCTTCCCTGGGGCAGAAGTCACCTTGTGTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAGAGCCCTGgtagggtattgcttccaaatgcacccttatcctacattggagcatggttg Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ataaggaggaacaatatgaaggatctgatgagccagatgacccaccctagGCTTCCCTGGGGCAGAAGTCACCTTGTGTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAGAGCCCTGgtagggtattgcttccaaatgcacccttatcctacattggagcatggttg Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG ataaggaggaacaatatgaaggatctgatgagccagatgacccaccctagGCTTCCCTGGGGCAGAAGTCACCTTGTGTGTTCTAGGGTCACTCAGCACCTTCCTATCACTGTTGCTGGAGGGTGGGGTTCAGAGCCCTGgtagggtattgcttccaaatgcacccttatcctacattggagcatggttg #### Casp7_ID12090_5 --> 0 - 1 Original Alignment GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAg caagtatgctttaaactacccagttctaatgtctccttttttcttgtcagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCCGACTGTCTCTTTGCTTATTCCACAGTCCCAggtaagtcaccaactcttggcagcccacagactgcttcatagaaagtcaca Alignment from CESAR GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAg caagtatgctttaaactacccagttctaatgtctccttttttcttgtcagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCCGACTGTCTCTTTGCTTATTCCACAGTCCCAggtaagtcaccaactcttggcagcccacagactgcttcatagaaagtcaca Alignment from Spaln_aa2Genome GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgctttaaactacccagttctaatgtctccttttttcttgtcagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCCGACTGTCTCTTTGCTTATTCCACAGTCCCAGgtaagtcaccaactcttggcagcccacagactgcttcatagaaagtcaca Alignment from Spaln_nt2Genome GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgctttaaactacccagttctaatgtctccttttttcttgtcagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCCGACTGTCTCTTTGCTTATTCCACAGTCCCAGgtaagtcaccaactcttggcagcccacagactgcttcatagaaagtcaca Alignment from Pairagon GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgctttaaactacccagttctaatgtctccttttttcttgtcagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCCGACTGTCTCTTTGCTTATTCCACAGTCCCAGgtaagtcaccaactcttggcagcccacagactgcttcatagaaagtcaca Alignment from Exonerate_protein2genome GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgctttaaactacccagttctaatgtctccttttttcttgtcagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCCGACTGTCTCTTTGCTTATTCCACAGTCCCAGgtaagtcaccaactcttggcagcccacagactgcttcatagaaagtcaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgctttaaactacccagttctaatgtctccttttttcttgtcagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCCGACTGTCTCTTTGCTTATTCCACAGTCCCAGgtaagtcaccaactcttggcagcccacagactgcttcatagaaagtcaca #### Catsper1_ID925_2 --> 2 - 1 Original Alignment agGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAG------CAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTg cctaaacaggcatgtaatctagcatctaatttctctggttctaattccagagGCCCAGAGGGCTCACAAAAAAGCACACACAGGGAATATCTTCCAGCTGCTTTGG---AAAATCAGCCACCTTTTACTTGGCTTGCAATTGCAACAAATA---TTGTCACTCATTGGGTCTCATGGGTTTAAGACTATTATCTTCATCGTGGTATGTTTCAACACAGTT---ATCGTCACTGAGACTTTTACTGAGTTAGAGATCCATGGAggtaatcgcaacaatgtggaggtatcttgtaacccatgggctgtccacaac Alignment from CESAR agGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAG---CAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTg cctaaacaggcatgtaatctagcatctaatttctctggttctaattccagagGCCCAGAGGGCTCACAAAAAAGCACACACAGGGAATATCTTCCAGCTGCTTTGG---AAAATCAGCCACCTTTTACTTGGCTTGCAATTGCAACAAATATTGTCACTCATTGGGTCTCATGGGTTTAAGACTATTATCTTCATCGTGGTATGTTTCAACACAGTTATC---GTCACTGAGACTTTTACTGAGTTAGAGATCCATGGAggtaatcgcaacaatgtggaggtatcttgtaacccatgggctgtccacaac Alignment from Spaln_aa2Genome AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAG---CAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG cctaaacaggcatgtaatctagcatctaatttctctggttctaattccagAGGCCCAGAGGGCTCACAAAAAAGCACACACAGGGAATATCTTCCAGCTGCTTTGG---AAAATCAGCCACCTTTTACTTGGCTTGCAATTGCAACAAATATTGTCACTCATTGGGTCTCATGGGTTTAAGACTATTATCTTCATCGTGGTATGTTTCAACACAGTTATC---GTCACTGAGACTTTTACTGAGTTAGAGATCCATGGAGgtaatcgcaacaatgtggaggtatcttgtaacccatgggctgtccacaac Alignment from Spaln_nt2Genome AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCA---GCAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG cctaaacaggcatgtaatctagcatctaatttctctggttctaattccagAGGCCCAGAGGGCTCACAAAAAAGCACACACAGGGAATATCTTCCAGCTGCTTTGG---AAAATCAGCCACCTTTTACTTGGCTTGCAATTGCAACAAATATTGTCACTCATTGGGTCTCATGGGTTTAAGACTATTATCTTCATCGTGGTATGTTTCAACACAGTTATC---GTCACTGAGACTTTTACTGAGTTAGAGATCCATGGAGgtaatcgcaacaatgtggaggtatcttgtaacccatgggctgtccacaac Alignment from Pairagon AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAA---------------------------------AAATAAGCCATCTCCTTTTGGGTCTTCAGCAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG cctaaacaggcatgtaatctagcatctaatttctctggttctaattccagAGGCCCAGAGGGCTCACAAAAAAGCACACACAGGGAATATCTTCCAGCTGCTTTGGAAAATCAGCCACCTTTTACTTGGCTTGCAATTGCAACAAAT---------------------------------ATTGTCACTCATTGGGTCTCATGGGTTTAAGACTATTATCTTCATCGTGGTATGTTTCAACACAGTTATC---GTCACTGAGACTTTTACTGAGTTAGAGATCCATGGAGgtaatcgcaacaatgtggaggtatcttgtaacccatgggctgtccacaac Alignment from Exonerate_protein2genome AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAG---CAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG cctaaacaggcatgtaatctagcatctaatttctctggttctaattccagAGGCCCAGAGGGCTCACAAAAAAGCACACACAGGGAATATCTTCCAGCTGCTTTGG---AAAATCAGCCACCTTTTACTTGGCTTGCAATTGCAACAAATATTGTCACTCATTGGGTCTCATGGGTTTAAGACTATTATCTTCATCGTGGTATGTTTCAACACAGTTATC---GTCACTGAGACTTTTACTGAGTTAGAGATCCATGGAGgtaatcgcaacaatgtggaggtatcttgtaacccatgggctgtccacaac Alignment from Exonerate_coding2genome AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAG---CAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG cctaaacaggcatgtaatctagcatctaatttctctggttctaattccagAGGCCCAGAGGGCTCACAAAAAAGCACACACAGGGAATATCTTCCAGCTGCTTTGG---AAAATCAGCCACCTTTTACTTGGCTTGCAATTGCAACAAATATTGTCACTCATTGGGTCTCATGGGTTTAAGACTATTATCTTCATCGTGGTATGTTTCAACACAGTTATC---GTCACTGAGACTTTTACTGAGTTAGAGATCCATGGAGgtaatcgcaacaatgtggaggtatcttgtaacccatgggctgtccacaac Alignment from GeneWise AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAG---CAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG cctaaacaggcatgtaatctagcatctaatttctctggttctaattccagAGGCCCAGAGGGCTCACAAAAAAGCACACACAGGGAATATCTTCCAGCTGCTTTGG---AAAATCAGCCACCTTTTACTTGGCTTGCAATTGCAACAAATATTGTCACTCATTGGGTCTCATGGGTTTAAGACTATTATCTTCATCGTGGTATGTTTCAACACAGTTATC---GTCACTGAGACTTTTACTGAGTTAGAGATCCATGGAGgtaatcgcaacaatgtggaggtatcttgtaacccatgggctgtccacaac #### Catsper1_ID926_3 --> 2 - 1 Original Alignment aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gtgagcagtgtagtcccagcctgtcccaaactctgttctgtgtctcacagaaTGGTATTTCATGATCCTAGACTCCATCTTCCTCACCATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTCTATGACCCGTCAAATAATCTGggtcagtcaatacagctagtccataatgaagcgtttcgctggttcataatg Alignment from CESAR aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gtgagcagtgtagtcccagcctgtcccaaactctgttctgtgtctcacagaaTGGTATTTCATGATCCTAGACTCCATCTTCCTCACCATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTCTATGACCCGTCAAATAATCTGggtcagtcaatacagctagtccataatgaagcgtttcgctggttcataatg Alignment from Spaln_aa2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gtgagcagtgtagtcccagcctgtcccaaactctgttctgtgtctcacagAATGGTATTTCATGATCCTAGACTCCATCTTCCTCACCATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTCTATGACCCGTCAAATAATCTGGgtcagtcaatacagctagtccataatgaagcgtttcgctggttcataatg Alignment from Spaln_nt2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gtgagcagtgtagtcccagcctgtcccaaactctgttctgtgtctcacagAATGGTATTTCATGATCCTAGACTCCATCTTCCTCACCATCTTTGTACTAGAGGCAG---TCAAACTTATTGCTTTGGGCTTAGAGTATTTCTATGACCCGTCAAATAATCTGGgtcagtcaatacagctagtccataatgaagcgtttcgctggttcataatg Alignment from Pairagon AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gtgagcagtgtagtcccagcctgtcccaaactctgttctgtgtctcacagAATGGTATTTCATGATCCTAGACTCCATCTTCCTCACCATCTTTGTACTAGAGGCAG---TCAAACTTATTGCTTTGGGCTTAGAGTATTTCTATGACCCGTCAAATAATCTGGgtcagtcaatacagctagtccataatgaagcgtttcgctggttcataatg Alignment from Exonerate_protein2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gtgagcagtgtagtcccagcctgtcccaaactctgttctgtgtctcacagAATGGTATTTCATGATCCTAGACTCCATCTTCCTCACCATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTCTATGACCCGTCAAATAATCTGGgtcagtcaatacagctagtccataatgaagcgtttcgctggttcataatg Alignment from Exonerate_coding2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gtgagcagtgtagtcccagcctgtcccaaactctgttctgtgtctcacagAATGGTATTTCATGATCCTAGACTCCATCTTCCTCACCATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTCTATGACCCGTCAAATAATCTGGgtcagtcaatacagctagtccataatgaagcgtttcgctggttcataatg Alignment from GeneWise AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gtgagcagtgtagtcccagcctgtcccaaactctgttctgtgtctcacagAATGGTATTTCATGATCCTAGACTCCATCTTCCTCACCATCTTTGTACTAGAGGCAGTC---AAACTTATTGCTTTGGGCTTAGAGTATTTCTATGACCCGTCAAATAATCTGGgtcagtcaatacagctagtccataatgaagcgtttcgctggttcataatg #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gcGC ttggactttccctttgctatgtcagatgtctgttctctcttgacccacagtcCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCAGATCCCAAGCGTTTCCAGAATGTCTTTATAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGACGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGggtgggtaccctaagcctccagggtagcagccactctttcctgtcagctGC Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gcGC ttggactttccctttgctatgtcagatgtctgttctctcttgacccacagtcCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCAGATCCCAAGCGTTTCCAGAATGTCTTTATAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGACGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGggtgggtaccctaagcctccagggttgtcgcttccttgtcttgacagctGC Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGC ttggactttccctttgctatgtcagatgtctgttctctcttgacccacagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCAGATCCCAAGCGTTTCCAGAATGTCTTTATAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGACGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGgtgggtaccctaagcctccagggtagcagccactctttcctgtcagCTGC Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGC ttggactttccctttgctatgtcagatgtctgttctctcttgacccacagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCAGATCCCAAGCGTTTCCAGAATGTCTTTATAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGACGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGgtgggtaccctaagcctccagggtagcagccactctttcctgtcagCTGC Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAGG----------------------------------------------CGC ttggactttccctttgctatgtcagatgtctgttctctcttgacccacagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCAGATCCCAAGCGTTTCCAGAATGTCTTTATAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGACGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGGTGGGTACCCTAAGCCTCCAGGGTAGCAGCCACTCTTTCCTGTCAGCTGC Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGC ttggactttccctttgctatgtcagatgtctgttctctcttgacccacagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCAGATCCCAAGCGTTTCCAGAATGTCTTTATAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGACGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGgtgggtaccctaagcctccagggtagcagccactctttcctgtcagCTGC Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGC ttggactttccctttgctatgtcagatgtctgttctctcttgacccacagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCAGATCCCAAGCGTTTCCAGAATGTCTTTATAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGACGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGgtgggtaccctaagcctccagggtagcagccactctttcctgtcagCTGC Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGC ttggactttccctttgctatgtcagatgtctgttctctcttgacccacagTCCTCTTCTCTGTGACTCTCCAAGCACTCTTCCAGGATCCAGATCCCAAGCGTTTCCAGAATGTCTTTATAACACTCTTCACCCTTTTCATGATGCTTAGCCTGGACGACTGGTCCCTTATCTACATAGAGAACAAGGCCCAGGgtgggtaccctaagcctccagggtagcagccactctttcctgtcagCTGC #### Cbwd1_ID5358_10 --> 1 - 2 Original Alignment aGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAag cattttatcatttagatattaggtggaatactgtttctgatattttacaggGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAaggtacctcatgggaagtcactcaagtatgtttttatgctctagtagcagac Alignment from CESAR aGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAag cattttatcatttagatattaggtggaatactgtttctgatattttacaggGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAaggtacctcatgggaagtcactcaagtatgtttttatgctctagtagcagac Alignment from Spaln_aa2Genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG cattttatcatttagatattaggtggaatactgtttctgatattttacagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtacctcatgggaagtcactcaagtatgtttttatgctctagtagcagac Alignment from Spaln_nt2Genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG cattttatcatttagatattaggtggaatactgtttctgatattttacagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtacctcatgggaagtcactcaagtatgtttttatgctctagtagcagac Alignment from Pairagon AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG cattttatcatttagatattaggtggaatactgtttctgatattttacagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtacctcatgggaagtcactcaagtatgtttttatgctctagtagcagac Alignment from Exonerate_protein2genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG cattttatcatttagatattaggtggaatactgtttctgatattttacagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtacctcatgggaagtcactcaagtatgtttttatgctctagtagcagac Alignment from Exonerate_coding2genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG cattttatcatttagatattaggtggaatactgtttctgatattttacagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtacctcatgggaagtcactcaagtatgtttttatgctctagtagcagac Alignment from GeneWise AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG cattttatcatttagatattaggtggaatactgtttctgatattttacagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtacctcatgggaagtcactcaagtatgtttttatgctctagtagcagac #### Ccdc147_ID10400_2 --> 0 - 0 Original Alignment GACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG catttgcataaaagggattaaagtaggggctttttacatttctttctcagGACAAGGCTGAAGAGGCAATGCCTCAGGAGACAGCATTTGAGGACATTGAGAAGGATTTTCACGAAATTCTTAGCGAGCTTTCTGGGGGCAAAAGTTTAGGGAAGTTCAGGACGGAATATGAGAAACTCCATTCAATTATGAAAAAGTCATATGAGAATGAGAAGTGTCTCATGGCCAAGTGCAGAGAGTTGAATGGAGAAAATGTTGTGAAGTCAGCCAAGGTAGCTACAGCTTTGAAACACCCTCAGGATGACCAACCCACTATTGCATCCCTCAAAAAGgtaagtctagtcaacaggcatagaactcccttataggtggctctctctga Alignment from CESAR GACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG catttgcataaaagggattaaagtaggggctttttacatttctttctcagGACAAGGCTGAAGAGGCAATGCCTCAGGAGACAGCATTTGAGGACATTGAGAAGGATTTTCACGAAATTCTTAGCGAGCTTTCTGGGGGCAAAAGTTTAGGGAAGTTCAGGACGGAATATGAGAAACTCCATTCAATTATGAAAAAGTCATATGAGAATGAGAAGTGTCTCATGGCCAAGTGCAGAGAGTTGAATGGAGAAAATGTTGTGAAGTCAGCCAAGGTAGCTACAGCTTTGAAACACCCTCAGGATGACCAACCCACTATTGCATCCCTCAAAAAGgtaagtctagtcaacaggcatagaactcccttataggtggctctctctga Alignment from Spaln_aa2Genome ACGGAGGACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG catttgcataaaagggattaaagtaggggctttttacatttcttTCTCAGGACAAGGCTGAAGAGGCAATGCCTCAGGAGACAGCATTTGAGGACATTGAGAAGGATTTTCACGAAATTCTTAGCGAGCTTTCTGGGGGCAAAAGTTTAGGGAAGTTCAGGACGGAATATGAGAAACTCCATTCAATTATGAAAAAGTCATATGAGAATGAGAAGTGTCTCATGGCCAAGTGCAGAGAGTTGAATGGAGAAAATGTTGTGAAGTCAGCCAAGGTAGCTACAGCTTTGAAACACCCTCAGGATGACCAACCCACTATTGCATCCCTCAAAAAGgtaagtctagtcaacaggcatagaactcccttataggtggctctctctga Alignment from Spaln_nt2Genome GACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG catttgcataaaagggattaaagtaggggctttttacatttctttctcagGACAAGGCTGAAGAGGCAATGCCTCAGGAGACAGCATTTGAGGACATTGAGAAGGATTTTCACGAAATTCTTAGCGAGCTTTCTGGGGGCAAAAGTTTAGGGAAGTTCAGGACGGAATATGAGAAACTCCATTCAATTATGAAAAAGTCATATGAGAATGAGAAGTGTCTCATGGCCAAGTGCAGAGAGTTGAATGGAGAAAATGTTGTGAAGTCAGCCAAGGTAGCTACAGCTTTGAAACACCCTCAGGATGACCAACCCACTATTGCATCCCTCAAAAAGgtaagtctagtcaacaggcatagaactcccttataggtggctctctctga Alignment from Pairagon GACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG catttgcataaaagggattaaagtaggggctttttacatttctttctcagGACAAGGCTGAAGAGGCAATGCCTCAGGAGACAGCATTTGAGGACATTGAGAAGGATTTTCACGAAATTCTTAGCGAGCTTTCTGGGGGCAAAAGTTTAGGGAAGTTCAGGACGGAATATGAGAAACTCCATTCAATTATGAAAAAGTCATATGAGAATGAGAAGTGTCTCATGGCCAAGTGCAGAGAGTTGAATGGAGAAAATGTTGTGAAGTCAGCCAAGGTAGCTACAGCTTTGAAACACCCTCAGGATGACCAACCCACTATTGCATCCCTCAAAAAGgtaagtctagtcaacaggcatagaactcccttataggtggctctctctga Alignment from Exonerate_protein2genome ACGGAGGACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG catttgcataaaagggattaaagtaggggctttttacatttcttTCTCAGGACAAGGCTGAAGAGGCAATGCCTCAGGAGACAGCATTTGAGGACATTGAGAAGGATTTTCACGAAATTCTTAGCGAGCTTTCTGGGGGCAAAAGTTTAGGGAAGTTCAGGACGGAATATGAGAAACTCCATTCAATTATGAAAAAGTCATATGAGAATGAGAAGTGTCTCATGGCCAAGTGCAGAGAGTTGAATGGAGAAAATGTTGTGAAGTCAGCCAAGGTAGCTACAGCTTTGAAACACCCTCAGGATGACCAACCCACTATTGCATCCCTCAAAAAGgtaagtctagtcaacaggcatagaactcccttataggtggctctctctga Alignment from Exonerate_coding2genome catttgcataaaagggattaaagtaggggctttttacatttctttctcaggacaaggctgaagaggcaatgcctcaggagacagcatttgaggacattgagaaggattttcacgaaattcttagcgagctttctgggggcaaaagtttagggaagttcaggacggaatatgagaaactccattcaattatgaaaaagtcatatgagaatgagaagtgtctcatggccaagtgcagagagttgaatggagaaaatgttgtgaagtcagccaaggtagctacagctttgaaacaccctcaggatgaccaacccactattgcatccctcaaaaaggtaagtctagtcaacaggcatagaactcccttataggtggctctctctga Alignment from GeneWise ACGGAGGACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG catttgcataaaagggattaaagtaggggctttttacatttcttTCTCAGGACAAGGCTGAAGAGGCAATGCCTCAGGAGACAGCATTTGAGGACATTGAGAAGGATTTTCACGAAATTCTTAGCGAGCTTTCTGGGGGCAAAAGTTTAGGGAAGTTCAGGACGGAATATGAGAAACTCCATTCAATTATGAAAAAGTCATATGAGAATGAGAAGTGTCTCATGGCCAAGTGCAGAGAGTTGAATGGAGAAAATGTTGTGAAGTCAGCCAAGGTAGCTACAGCTTTGAAACACCCTCAGGATGACCAACCCACTATTGCATCCCTCAAAAAGgtaagtctagtcaacaggcatagaactcccttataggtggctctctctga #### Ccdc147_ID10402_4 --> 1 - 0 Original Alignment cATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG gataaaactgatatgtgattgcccactttgtgtgttttaccttcctacagcATCTGGGACTTACTTAAGTTCAAAGAGGTTGTGACAAAGGAACGTGACCAGTTCTTGTCAGAGGTTGTGAAGCTGCAGGAGAACATAGCTCAGTCACTTGAAAAAAAGGAAGCAGCAGAGCAA---AAGGAAGAGGCTGAAATGGCTATCAGTCATgtaggtaactgtgctcttgtgacaggggatattgatcctctagccttccc Alignment from CESAR cATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG gataaaactgatatgtgattgcccactttgtgtgttttaccttcctacagcATCTGGGACTTACTTAAGTTCAAAGAGGTTGTGACAAAGGAACGTGACCAGTTCTTGTCAGAGGTTGTGAAGCTGCAGGAGAACATAGCTCAGTCACTTGAAAAAAAGGAAGCAGCAGAGCAA---AAGGAAGAGGCTGAAATGGCTATCAGTCATgtaggtaactgtgctcttgtgacaggggatattgatcctctagccttccc Alignment from Spaln_aa2Genome CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG gataaaactgatatgtgattgcccactttgtgtgttttaccttcctacagCATCTGGGACTTACTTAAGTTCAAAGAGGTTGTGACAAAGGAACGTGACCAGTTCTTGTCAGAGGTTGTGAAGCTGCAGGAGAACATAGCTCAGTCACTTGAAAAAAAGGAAGCAGCAGAGCAA---AAGGAAGAGGCTGAAATGGCTATCAGTCATgtaggtaactgtgctcttgtgacaggggatattgatcctctagccttccc Alignment from Spaln_nt2Genome CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTC gataaaactgatatgtgattgcccactttgtgtgttttaccttcctacagCATCTGGGACTTACTTAAGTTCAAAGAGGTTGTGACAAAGGAACGTGACCAGTTCTTGTCAGAGGTTGTGAAGCTGCAGGAGAACATAGCTCAGTCACTTGAAAAAAAGGAAGCAGCAGAGCA---AAAGGAAGAGGCTGAAATGGCTATCAGTCatgtaggtaactgtgctcttgtgacaggggatattgatcctctagccttccc Alignment from Pairagon CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG gataaaactgatatgtgattgcccactttgtgtgttttaccttcctacagCATCTGGGACTTACTTAAGTTCAAAGAGGTTGTGACAAAGGAACGTGACCAGTTCTTGTCAGAGGTTGTGAAGCTGCAGGAGAACATAGCTCAGTCACTTGAAAAAAAGGAAGCAGCAGAGCA---AAAGGAAGAGGCTGAAATGGCTATCAGTCATgtaggtaactgtgctcttgtgacaggggatattgatcctctagccttccc Alignment from Exonerate_protein2genome CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG gataaaactgatatgtgattgcccactttgtgtgttttaccttcctacagCATCTGGGACTTACTTAAGTTCAAAGAGGTTGTGACAAAGGAACGTGACCAGTTCTTGTCAGAGGTTGTGAAGCTGCAGGAGAACATAGCTCAGTCACTTGAAAAAAAGGAAGCAGCAGAGCAA---AAGGAAGAGGCTGAAATGGCTATCAGTCATgtaggtaactgtgctcttgtgacaggggatattgatcctctagccttccc Alignment from Exonerate_coding2genome gataaaactgatatgtgattgcccactttgtgtgttttaccttcctacagcatctgggacttacttaagttcaaagaggttgtgacaaaggaacgtgaccagttcttgtcagaggttgtgaagctgcaggagaacatagctcagtcacttgaaaaaaaggaagcagcagagcaaaaggaagaggctgaaatggctatcagtcatgtaggtaactgtgctcttgtgacaggggatattgatcctctagccttccc Alignment from GeneWise CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG gataaaactgatatgtgattgcccactttgtgtgttttaccttcctacagCATCTGGGACTTACTTAAGTTCAAAGAGGTTGTGACAAAGGAACGTGACCAGTTCTTGTCAGAGGTTGTGAAGCTGCAGGAGAACATAGCTCAGTCACTTGAAAAAAAGGAAGCAGCAGAGCAA---AAGGAAGAGGCTGAAATGGCTATCAGTCATgtaggtaactgtgctcttgtgacaggggatattgatcctctagccttccc #### Ccdc147_ID10403_5 --> 0 - 0 Original Alignment TTCCAACAAGAAATCCAGCATCGTCAGAATGAAGCTTCCAGGGAGTCTCGGAAGAAGGAGAAGCTGGAGAAAGAGCTCAGGCAGATCCAGACGGACATGGACGGCAGGCAGGCGGAGATCAAGGCTATGCAGCAGTATATGCACAAGAGCAAGGAGGAACTTCAGCGGCTGGAACAGCAGCTCAAGGAGCAGAAG agcgtcctcaccgtcctctcaagtgattgctttgctttctctgcttgcagTTCCAACAAGAAATTCAGCATCGTCACACTGAGGCCTCTAGGGAGTCCCGAAAAAAAGAGAAGCTGGAGAAAGAACTCAGACGGATTCAGGCTGACATGGATAGCAGGCAGGCAGAGATCAAGGCCATGCAGCAATATATGGACAAGAGCAGGGAGGAACTTCAAAGATTGGAACAGCAGCTTAAGGAGCAGAGGgtaagtgtccgtttgtaatatggactgatgttgagcatttcctatgtcct Alignment from CESAR TTCCAACAAGAAATCCAGCATCGTCAGAATGAAGCTTCCAGGGAGTCTCGGAAGAAGGAGAAGCTGGAGAAAGAGCTCAGGCAGATCCAGACGGACATGGACGGCAGGCAGGCGGAGATCAAGGCTATGCAGCAGTATATGCACAAGAGCAAGGAGGAACTTCAGCGGCTGGAACAGCAGCTCAAGGAGCAGAAG agcgtcctcaccgtcctctcaagtgattgctttgctttctctgcttgcagTTCCAACAAGAAATTCAGCATCGTCACACTGAGGCCTCTAGGGAGTCCCGAAAAAAAGAGAAGCTGGAGAAAGAACTCAGACGGATTCAGGCTGACATGGATAGCAGGCAGGCAGAGATCAAGGCCATGCAGCAATATATGGACAAGAGCAGGGAGGAACTTCAAAGATTGGAACAGCAGCTTAAGGAGCAGAGGgtaagtgtccgtttgtaatatggactgatgttgagcatttcctatgtcct Alignment from Spaln_aa2Genome TTCCAACAAGAAATCCAGCATCGTCAGAATGAAGCTTCCAGGGAGTCTCGGAAGAAGGAGAAGCTGGAGAAAGAGCTCAGGCAGATCCAGACGGACATGGACGGCAGGCAGGCGGAGATCAAGGCTATGCAGCAGTATATGCACAAGAGCAAGGAGGAACTTCAGCGGCTGGAACAGCAGCTCAAGGAGCAGAAG agcgtcctcaccgtcctctcaagtgattgctttgctttctctgcttgcagTTCCAACAAGAAATTCAGCATCGTCACACTGAGGCCTCTAGGGAGTCCCGAAAAAAAGAGAAGCTGGAGAAAGAACTCAGACGGATTCAGGCTGACATGGATAGCAGGCAGGCAGAGATCAAGGCCATGCAGCAATATATGGACAAGAGCAGGGAGGAACTTCAAAGATTGGAACAGCAGCTTAAGGAGCAGAGGgtaagtgtccgtttgtaatatggactgatgttgagcatttcctatgtcct Alignment from Spaln_nt2Genome TTCCAACAAGAAATCCAGCATCGTCAGAATGAAGCTTCCAGGGAGTCTCGGAAGAAGGAGAAGCTGGAGAAAGAGCTCAGGCAGATCCAGACGGACATGGACGGCAGGCAGGCGGAGATCAAGGCTATGCAGCAGTATATGCACAAGAGCAAGGAGGAACTTCAGCGGCTGGAACAGCAGCTCAAGGAGCAGAAG agcgtcctcaccgtcctctcaagtgattgctttgctttctctgcttgcagTTCCAACAAGAAATTCAGCATCGTCACACTGAGGCCTCTAGGGAGTCCCGAAAAAAAGAGAAGCTGGAGAAAGAACTCAGACGGATTCAGGCTGACATGGATAGCAGGCAGGCAGAGATCAAGGCCATGCAGCAATATATGGACAAGAGCAGGGAGGAACTTCAAAGATTGGAACAGCAGCTTAAGGAGCAGAGGgtaagtgtccgtttgtaatatggactgatgttgagcatttcctatgtcct Alignment from Pairagon TTCCAACAAGAAATCCAGCATCGTCAGAATGAAGCTTCCAGGGAGTCTCGGAAGAAGGAGAAGCTGGAGAAAGAGCTCAGGCAGATCCAGACGGACATGGACGGCAGGCAGGCGGAGATCAAGGCTATGCAGCAGTATATGCACAAGAGCAAGGAGGAACTTCAGCGGCTGGAACAGCAGCTCAAGGAGCAGAAG agcgtcctcaccgtcctctcaagtgattgctttgctttctctgcttgcagTTCCAACAAGAAATTCAGCATCGTCACACTGAGGCCTCTAGGGAGTCCCGAAAAAAAGAGAAGCTGGAGAAAGAACTCAGACGGATTCAGGCTGACATGGATAGCAGGCAGGCAGAGATCAAGGCCATGCAGCAATATATGGACAAGAGCAGGGAGGAACTTCAAAGATTGGAACAGCAGCTTAAGGAGCAGAGGgtaagtgtccgtttgtaatatggactgatgttgagcatttcctatgtcct Alignment from Exonerate_protein2genome TTCCAACAAGAAATCCAGCATCGTCAGAATGAAGCTTCCAGGGAGTCTCGGAAGAAGGAGAAGCTGGAGAAAGAGCTCAGGCAGATCCAGACGGACATGGACGGCAGGCAGGCGGAGATCAAGGCTATGCAGCAGTATATGCACAAGAGCAAGGAGGAACTTCAGCGGCTGGAACAGCAGCTCAAGGAGCAGAAG agcgtcctcaccgtcctctcaagtgattgctttgctttctctgcttgcagTTCCAACAAGAAATTCAGCATCGTCACACTGAGGCCTCTAGGGAGTCCCGAAAAAAAGAGAAGCTGGAGAAAGAACTCAGACGGATTCAGGCTGACATGGATAGCAGGCAGGCAGAGATCAAGGCCATGCAGCAATATATGGACAAGAGCAGGGAGGAACTTCAAAGATTGGAACAGCAGCTTAAGGAGCAGAGGgtaagtgtccgtttgtaatatggactgatgttgagcatttcctatgtcct Alignment from Exonerate_coding2genome agcgtcctcaccgtcctctcaagtgattgctttgctttctctgcttgcagttccaacaagaaattcagcatcgtcacactgaggcctctagggagtcccgaaaaaaagagaagctggagaaagaactcagacggattcaggctgacatggatagcaggcaggcagagatcaaggccatgcagcaatatatggacaagagcagggaggaacttcaaagattggaacagcagcttaaggagcagagggtaagtgtccgtttgtaatatggactgatgttgagcatttcctatgtcct Alignment from GeneWise TTCCAACAAGAAATCCAGCATCGTCAGAATGAAGCTTCCAGGGAGTCTCGGAAGAAGGAGAAGCTGGAGAAAGAGCTCAGGCAGATCCAGACGGACATGGACGGCAGGCAGGCGGAGATCAAGGCTATGCAGCAGTATATGCACAAGAGCAAGGAGGAACTTCAGCGGCTGGAACAGCAGCTCAAGGAGCAGAAG agcgtcctcaccgtcctctcaagtgattgctttgctttctctgcttgcagTTCCAACAAGAAATTCAGCATCGTCACACTGAGGCCTCTAGGGAGTCCCGAAAAAAAGAGAAGCTGGAGAAAGAACTCAGACGGATTCAGGCTGACATGGATAGCAGGCAGGCAGAGATCAAGGCCATGCAGCAATATATGGACAAGAGCAGGGAGGAACTTCAAAGATTGGAACAGCAGCTTAAGGAGCAGAGGgtaagtgtccgtttgtaatatggactgatgttgagcatttcctatgtcct #### Ccdc147_ID10428_15 --> 0 - 0 Original Alignment GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cgcacaacaagttacaaggtgcttatattcacgcctcccttttctgccagGCTCGTGACCCATGCACCTTTGAGCTGAACCAGAAAATTCACACCCTCCAGGAACAGCCTGTAAGTAAGACAGAAGAGGTAGTGGAGAAGAAGCTGCTTCTCCAGgtaggtagtaatggtattagctctggatttgtttctggcctcgaacttac Alignment from CESAR GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cgcacaacaagttacaaggtgcttatattcacgcctcccttttctgccagGCTCGTGACCCATGCACCTTTGAGCTGAACCAGAAAATTCACACCCTCCAGGAACAGCCTGTAAGTAAGACAGAAGAGGTAGTGGAGAAGAAGCTGCTTCTCCAGgtaggtagtaatggtattagctctggatttgtttctggcctcgaacttac Alignment from Spaln_aa2Genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cgcacaacaagttacaaggtgcttatattcacgcctcccttttctgccagGCTCGTGACCCATGCACCTTTGAGCTGAACCAGAAAATTCACACCCTCCAGGAACAGCCTGTAAGTAAGACAGAAGAGGTAGTGGAGAAGAAGCTGCTTCTCCAGgtaggtagtaatggtattagctctggatttgtttctggcctcgaacttac Alignment from Spaln_nt2Genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cgcacaacaagttacaaggtgcttatattcacgcctcccttttctgccagGCTCGTGACCCATGCACCTTTGAGCTGAACCAGAAAATTCACACCCTCCAGGAACAGCCTGTAAGTAAGACAGAAGAGGTAGTGGAGAAGAAGCTGCTTCTCCAGgtaggtagtaatggtattagctctggatttgtttctggcctcgaacttac Alignment from Pairagon GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cgcacaacaagttacaaggtgcttatattcacgcctcccttttctgccagGCTCGTGACCCATGCACCTTTGAGCTGAACCAGAAAATTCACACCCTCCAGGAACAGCCTGTAAGTAAGACAGAAGAGGTAGTGGAGAAGAAGCTGCTTCTCCAGgtaggtagtaatggtattagctctggatttgtttctggcctcgaacttac Alignment from Exonerate_protein2genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cgcacaacaagttacaaggtgcttatattcacgcctcccttttctgccagGCTCGTGACCCATGCACCTTTGAGCTGAACCAGAAAATTCACACCCTCCAGGAACAGCCTGTAAGTAAGACAGAAGAGGTAGTGGAGAAGAAGCTGCTTCTCCAGgtaggtagtaatggtattagctctggatttgtttctggcctcgaacttac Alignment from Exonerate_coding2genome cgcacaacaagttacaaggtgcttatattcacgcctcccttttctgccaggctcgtgacccatgcacctttgagctgaaccagaaaattcacaccctccaggaacagcctgtaagtaagacagaagaggtagtggagaagaagctgcttctccaggtaggtagtaatggtattagctctggatttgtttctggcctcgaacttac Alignment from GeneWise GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cgcacaacaagttacaaggtgcttatattcacgcctcccttttctgccagGCTCGTGACCCATGCACCTTTGAGCTGAACCAGAAAATTCACACCCTCCAGGAACAGCCTGTAAGTAAGACAGAAGAGGTAGTGGAGAAGAAGCTGCTTCTCCAGgtaggtagtaatggtattagctctggatttgtttctggcctcgaacttac #### Ccdc147_ID10441_16 --> 0 - 0 Original Alignment GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctagaaagctggaatcaacttcaaaactgacgtacttatcttccagCAAAAAGAAGAGCTATATGTGGAGCTGAGTCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACCTTGTGTGAGAAGGCAAAACAGCTGAAAgcaagtacctactagtttacagatatatttaccacacaactactcttcag Alignment from CESAR GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctagaaagctggaatcaacttcaaaactgacgtacttatcttccagCAAAAAGAAGAGCTATATGTGGAGCTGAGTCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACCTTGTGTGAGAAGGCAAAACAGCTGAAAgcaagtacctactagtttacagatatatttaccacacaactactcttcag Alignment from Spaln_aa2Genome GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctagaaagctggaatcaacttcaaaactgacgtacttatcttccagCAAAAAGAAGAGCTATATGTGGAGCTGAGTCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACCTTGTGTGAGAAGGCAAAACAGCTGAAAgcaagtacctactagtttacagatatatttaccacacaactactcttcag Alignment from Spaln_nt2Genome GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctagaaagctggaatcaacttcaaaactgacgtacttatcttccagCAAAAAGAAGAGCTATATGTGGAGCTGAGTCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACCTTGTGTGAGAAGGCAAAACAGCTGAAAgcaagtacctactagtttacagatatatttaccacacaactactcttcag Alignment from Pairagon GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctagaaagctggaatcaacttcaaaactgacgtacttatcttccagCAAAAAGAAGAGCTATATGTGGAGCTGAGTCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACCTTGTGTGAGAAGGCAAAACAGCTGAAAgcaagtacctactagtttacagatatatttaccacacaactactcttcag Alignment from Exonerate_protein2genome GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctagaaagctggaatcaacttcaaaactgacgtacttatcttccagCAAAAAGAAGAGCTATATGTGGAGCTGAGTCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACCTTGTGTGAGAAGGCAAAACAGCTGAAAgcaagtacctactagtttacagatatatttaccacacaactactcttcag Alignment from Exonerate_coding2genome tgttctagaaagctggaatcaacttcaaaactgacgtacttatcttccagcaaaaagaagagctatatgtggagctgagtcacattttggcccgtcaacctgggccagaggctgcagagcaactacagatctatcatcacaccttgtgtgagaaggcaaaacagctgaaagcaagtacctactagtttacagatatatttaccacacaactactcttcag Alignment from GeneWise GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA-GTT tgttctagaaagctggaatcaacttcaaaactgacgtacttatcttccagCAAAAAGAAGAGCTATATGTGGAGCTGAGTCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACCTTGTGTGAGAAGGCAAAACAGCTGAAAGCAAgtacctactagtttacagatatatttaccacacaactactcttcag #### Ccdc172_ID12724_4 --> 0 - 1 Original Alignment GAGGCTATAAAGAATAAAACCACAGAGGAAGAGGAAAGATTTATTAAGGAAATTACAGACTTCAATGACAATTATGAAATAACCAAGAAAAGAGATACTTTGATGAAAGAAAATATCGAGATGGAAATGGCTGACTTAGACAGCCAGGCAGATGTTTTGAGAAGGg gcatgagaaggataatggcacaattatgttctgtgggctggcgtctacagGAGGCGATCAAGAACAATAGTACAGAGGAAGAAGAAAGGTTTATTAAGGAAATTACTGATTTCAATGAGAATTATGAGATAAGCAAGAAACGGGATACCCTGATGAAAGAAAATATTGAGATGGAAATGGCTGACCTAGACAGTCAAGCAGGTGTTTTACGTAAGggtaagtatcgacagttaagttttagatgtacaaccatgagcccatgggtt Alignment from CESAR GAGGCTATAAAGAATAAAACCACAGAGGAAGAGGAAAGATTTATTAAGGAAATTACAGACTTCAATGACAATTATGAAATAACCAAGAAAAGAGATACTTTGATGAAAGAAAATATCGAGATGGAAATGGCTGACTTAGACAGCCAGGCAGATGTTTTGAGAAGGg gcatgagaaggataatggcacaattatgttctgtgggctggcgtctacagGAGGCGATCAAGAACAATAGTACAGAGGAAGAAGAAAGGTTTATTAAGGAAATTACTGATTTCAATGAGAATTATGAGATAAGCAAGAAACGGGATACCCTGATGAAAGAAAATATTGAGATGGAAATGGCTGACCTAGACAGTCAAGCAGGTGTTTTACGTAAGggtaagtatcgacagttaagttttagatgtacaaccatgagcccatgggtt Alignment from Spaln_aa2Genome GAGGCTATAAAGAATAAAACCACAGAGGAAGAGGAAAGATTTATTAAGGAAATTACAGACTTCAATGACAATTATGAAATAACCAAGAAAAGAGATACTTTGATGAAAGAAAATATCGAGATGGAAATGGCTGACTTAGACAGCCAGGCAGATGTTTTGAGAAGGG gcatgagaaggataatggcacaattatgttctgtgggctggcgtctacagGAGGCGATCAAGAACAATAGTACAGAGGAAGAAGAAAGGTTTATTAAGGAAATTACTGATTTCAATGAGAATTATGAGATAAGCAAGAAACGGGATACCCTGATGAAAGAAAATATTGAGATGGAAATGGCTGACCTAGACAGTCAAGCAGGTGTTTTACGTAAGGgtaagtatcgacagttaagttttagatgtacaaccatgagcccatgggtt Alignment from Spaln_nt2Genome GAGGCTATAAAGAATAAAACCACAGAGGAAGAGGAAAGATTTATTAAGGAAATTACAGACTTCAATGACAATTATGAAATAACCAAGAAAAGAGATACTTTGATGAAAGAAAATATCGAGATGGAAATGGCTGACTTAGACAGCCAGGCAGATGTTTTGAGAAGGG gcatgagaaggataatggcacaattatgttctgtgggctggcgtctacagGAGGCGATCAAGAACAATAGTACAGAGGAAGAAGAAAGGTTTATTAAGGAAATTACTGATTTCAATGAGAATTATGAGATAAGCAAGAAACGGGATACCCTGATGAAAGAAAATATTGAGATGGAAATGGCTGACCTAGACAGTCAAGCAGGTGTTTTACGTAAGGgtaagtatcgacagttaagttttagatgtacaaccatgagcccatgggtt Alignment from Pairagon GAGGCTATAAAGAATAAAACCACAGAGGAAGAGGAAAGATTTATTAAGGAAATTACAGACTTCAATGACAATTATGAAATAACCAAGAAAAGAGATACTTTGATGAAAGAAAATATCGAGATGGAAATGGCTGACTTAGACAGCCAGGCAGATGTTTTGAGAAGGG gcatgagaaggataatggcacaattatgttctgtgggctggcgtctacagGAGGCGATCAAGAACAATAGTACAGAGGAAGAAGAAAGGTTTATTAAGGAAATTACTGATTTCAATGAGAATTATGAGATAAGCAAGAAACGGGATACCCTGATGAAAGAAAATATTGAGATGGAAATGGCTGACCTAGACAGTCAAGCAGGTGTTTTACGTAAGGgtaagtatcgacagttaagttttagatgtacaaccatgagcccatgggtt Alignment from Exonerate_protein2genome GAGGCTATAAAGAATAAAACCACAGAGGAAGAGGAAAGATTTATTAAGGAAATTACAGACTTCAATGACAATTATGAAATAACCAAGAAAAGAGATACTTTGATGAAAGAAAATATCGAGATGGAAATGGCTGACTTAGACAGCCAGGCAGATGTTTTGAGAAGGG gcatgagaaggataatggcacaattatgttctgtgggctggcgtctacagGAGGCGATCAAGAACAATAGTACAGAGGAAGAAGAAAGGTTTATTAAGGAAATTACTGATTTCAATGAGAATTATGAGATAAGCAAGAAACGGGATACCCTGATGAAAGAAAATATTGAGATGGAAATGGCTGACCTAGACAGTCAAGCAGGTGTTTTACGTAAGGgtaagtatcgacagttaagttttagatgtacaaccatgagcccatgggtt Alignment from Exonerate_coding2genome GAGGCTATAAAGAATAAAACCACAGAGGAAGAGGAAAGATTTATTAAGGAAATTACAGACTTCAATGACAATTATGAAATAACCAAGAAAAGAGATACTTTGATGAAAGAAAATATCGAGATGGAAATGGCTGACTTAGACAGCCAGGCAGATGTTTTGAGAAGGG gcatgagaaggataatggcacaattatgttctgtgggctggcgtctacagGAGGCGATCAAGAACAATAGTACAGAGGAAGAAGAAAGGTTTATTAAGGAAATTACTGATTTCAATGAGAATTATGAGATAAGCAAGAAACGGGATACCCTGATGAAAGAAAATATTGAGATGGAAATGGCTGACCTAGACAGTCAAGCAGGTGTTTTACGTAAGGgtaagtatcgacagttaagttttagatgtacaaccatgagcccatgggtt Alignment from GeneWise GAGGCTATAAAGAATAAAACCACAGAGGAAGAGGAAAGATTTATTAAGGAAATTACAGACTTCAATGACAATTATGAAATAACCAAGAAAAGAGATACTTTGATGAAAGAAAATATCGAGATGGAAATGGCTGACTTAGACAGCCAGGCAGATGTTTTGAGAAGGG gcatgagaaggataatggcacaattatgttctgtgggctggcgtctacagGAGGCGATCAAGAACAATAGTACAGAGGAAGAAGAAAGGTTTATTAAGGAAATTACTGATTTCAATGAGAATTATGAGATAAGCAAGAAACGGGATACCCTGATGAAAGAAAATATTGAGATGGAAATGGCTGACCTAGACAGTCAAGCAGGTGTTTTACGTAAGGgtaagtatcgacagttaagttttagatgtacaaccatgagcccatgggtt #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG aagggctgtcacatcacaacgttaatatcctaaccttttttccccctaagAATGCCACATTAGTGGCAGAGAAAGTGGCTCTGCAGGGACAGTTACAGCATCTTGAGGGCCAGCTGGGTAGCCTACATGCTCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagcttgggtgattgaatgggttgggtcatccaccttgaaacaatgta Alignment from CESAR AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG aagggctgtcacatcacaacgttaatatcctaaccttttttccccctaagAATGCCACATTAGTGGCAGAGAAAGTGGCTCTGCAGGGACAGTTACAGCATCTTGAGGGCCAGCTGGGTAGCCTACATGCTCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagcttgggtgattgaatgggttgggtcatccaccttgaaacaatgta Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG aagggctgtcacatcacaacgttaatatcctaaccttttttccccctaagAATGCCACATTAGTGGCAGAGAAAGTGGCTCTGCAGGGACAGTTACAGCATCTTGAGGGCCAGCTGGGTAGCCTACATGCTCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagcttgggtgattgaatgggttgggtcatccaccttgaaacaatgta Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG aagggctgtcacatcacaacgttaatatcctaaccttttttccccctaagAATGCCACATTAGTGGCAGAGAAAGTGGCTCTGCAGGGACAGTTACAGCATCTTGAGGGCCAGCTGGGTAGCCTACATGCTCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagcttgggtgattgaatgggttgggtcatccaccttgaaacaatgta Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG aagggctgtcacatcacaacgttaatatcctaaccttttttccccctaagAATGCCACATTAGTGGCAGAGAAAGTGGCTCTGCAGGGACAGTTACAGCATCTTGAGGGCCAGCTGGGTAGCCTACATGCTCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagcttgggtgattgaatgggttgggtcatccaccttgaaacaatgta Alignment from Exonerate_protein2genome aagggctgtcacatcacaacgttaatatcctaaccttttttccccctaagaatgccacattagtggcagagaaagtggctctgcagggacagttacagcatcttgagggccagctgggtagcctacatgctcgtgcacaggagttgcttctacagagtcaacgggctcaagagcacagtagttgcttgcaggtgagcttgggtgattgaatgggttgggtcatccaccttgaaacaatgta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG aagggctgtcacatcacaacgttaatatcctaaccttttttccccctaagAATGCCACATTAGTGGCAGAGAAAGTGGCTCTGCAGGGACAGTTACAGCATCTTGAGGGCCAGCTGGGTAGCCTACATGCTCGTGCACAGGAGTTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCTTGCAGgtgagcttgggtgattgaatgggttgggtcatccaccttgaaacaatgta #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tccaagattaagtggaggctaacaaggcctttctaattctttttccttagCTACATCAGTGCCCTGTG---CTT---GAAGGTGCACGGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGACAGCTTATTGTAGTAGAGCAAAATgtagagatgaagacgggggcctactttagagctaaaagggctgtcacatc Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tccaagattaagtggaggctaacaaggcctttctaattctttttccttagCTACATCAGTGCCCTGTG---CTTGAAGGTGCACGGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGACAGCTTATTGTAGTAGAGCAAAATgtagagatgaagacgggggcctactttagagctaaaagggctgtcacatc Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tccaagattaagtggaggctaacaaggcctttctaattctttttccttagCTACATCAGTGCCCTGTG---CTTGAAGGTGCACGGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGACAGCTTATTGTAGTAGAGCAAAATgtagagatgaagacgggggcctactttagagctaaaagggctgtcacatc Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tccaagattaagtggaggctaacaaggcctttctaattctttttccttagCTACATCAGTGCCCTGTG---CTTGAAGGTGCACGGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGACAGCTTATTGTAGTAGAGCAAAATgtagagatgaagacgggggcctactttagagctaaaagggctgtcacatc Alignment from Pairagon CTGCGCCAGTACCC----------GGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tccaagattaagtggaggctaacaaggcctttctaattctttttccttagCTACATCAGTGCCCTGTGCTTGAAGGTGCAC-------------GGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGACAGCTTATTGTAGTAGAGCAAAATgtagagatgaagacgggggcctactttagagctaaaagggctgtcacatc Alignment from Exonerate_protein2genome tccaagattaagtggaggctaacaaggcctttctaattctttttccttagctacatcagtgccctgtgcttgaaggtgcacggcgagatggcccttgggctgcggagacacacaatggacagcttattgtagtagagcaaaatgtagagatgaagacgggggcctactttagagctaaaagggctgtcacatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tccaagattaagtggaggctaacaaggcctttctaattctttttccttagCTACATCAGTGCCCTGTG---CTTGAAGGTGCACGGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGACAGCTTATTGTAGTAGAGCAAAATgtagagatgaagacgggggcctactttagagctaaaagggctgtcacatc #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCATCAGAA---GAGGCAGGTCACCTGCCCCACCTGCAGGAAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCATCA---GAAGAGGCAGGTCACCTGCCCCACCTGCAGGAAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCA---TCAGAAGAGGCAGGTCACCTGCCCCACCTGCAGGAAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCA--TCAGAAG-AGGCAGGTCACCTGCCCCACCTGCAGGAAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGC--------ACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCATCAGAAGA-----------GGCAGGTCACCTGCCCCACCTGCAGGAAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from Exonerate_protein2genome GGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAGACTCAG----GCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG ACTCCTTCACTGGCAGCCCCCTGTCCAGTATTTTCTGTTTTCTACTGAAGACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCATCAGAAGAGGCAGGTCACCTGCCCCACCTGCAGGAAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG actccttcactggcagccccctgtccagtattttctgttttctactgaagACTCAGGCATTGTCTGCCCAAGCAAAGTGCACCGAACTCTGCTGTGAAGAGGCAGAGGCA---TCAGAAGAGGCAGGTCACCTGCCCCACCTGCAGGAAGATCTTCGAAGATGCTGGGAGAAGCTTCAAGCTGCAGAAGTCTTCAAGGGACATTTGGAAgtgaggttatgcacatatgaaccagagcaatgggtagtgtcgatgctgct #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagtTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCTATGGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagtTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCTATGGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattc Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCTATGGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCTATGGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCTATGGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from Exonerate_protein2genome ctttattattaacaggactctgagtatctaaagcatttttttccctccagttctccaagttctcaagggggagttcgtatggtcagaggacgcgatggtacagctgcttgtcagatgtggacactctgtcatctatgggggcagttgagagacttttatcaggtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from Exonerate_coding2genome ctttattattaacaggactctgagtatctaaagcatttttttccctccagttctccaagttctcaagggggagttcgtatggtcagaggacgcgatggtacagctgcttgtcagatgtggacactctgtcatctatgggggcagttgagagacttttatcaggtacactcagtatggaatccagagcccaggcacctagctcagacacattt Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG ctttattattaacaggactctgagtatctaaagcatttttttccctccagTTCTCCAAGTTCTCAAGGGGGAGTTCGTATGGTCAGAGGACGCGATGGTACAGCTGCTTGTCAGATGTGGACACTCTGTCATCTATGGGGGCAGTTGAGAGACTTTTATCAGgtacactcagtatggaatccagagcccaggcacctagctcagacacattt #### Ccs_ID662_6 --> 0 - 0 Original Alignment CACCGGGGAGATCTGGGCAATGTCCGGGCTGAAGCTGGTGGCCGAGCTACCTTCCGGATAGAGGATAAACAGCTGAAG acataccctgtcagcttcctcaccataactcgatgcctggccgccaccagCACCATGGTGATCTGAGCAATGTGCGGGCAGAGACAGATGGTAAAGCTACTTTTCAACTAGAGGACAGACAGCTTAGAgtacttaactagagagtgcatatgaagggcagatgaatctgactcttttc Alignment from CESAR CACCGGGGAGATCTGGGCAATGTCCGGGCTGAAGCTGGTGGCCGAGCTACCTTCCGGATAGAGGATAAACAGCTGAAG acataccctgtcagcttcctcaccataactcgatgcctggccgccaccagCACCATGGTGATCTGAGCAATGTGCGGGCAGAGACAGATGGTAAAGCTACTTTTCAACTAGAGGACAGACAGCTTAGAgtacttaactagagagtgcatatgaagggcagatgaatctgactccctcc Alignment from Spaln_aa2Genome CACCGGGGAGATCTGGGCAATGTCCGGGCTGAAGCTGGTGGCCGAGCTACCTTCCGGATAGAGGATAAACAGCTGAAG acataccctgtcagcttcctcaccataactcgatgcctggccgccaccagCACCATGGTGATCTGAGCAATGTGCGGGCAGAGACAGATGGTAAAGCTACTTTTCAACTAGAGGACAGACAGCTTAGAgtacttaactagagagtgcatatgaagggcagatgaatctgactcttttc Alignment from Spaln_nt2Genome CACCGGGGAGATCTGGGCAATGTCCGGGCTGAAGCTGGTGGCCGAGCTACCTTCCGGATAGAGGATAAACAGCTGAAG acataccctgtcagcttcctcaccataactcgatgcctggccgccaccagCACCATGGTGATCTGAGCAATGTGCGGGCAGAGACAGATGGTAAAGCTACTTTTCAACTAGAGGACAGACAGCTTAGAgtacttaactagagagtgcatatgaagggcagatgaatctgactcttttc Alignment from Pairagon CACCGGGGAGATCTGGGCAATGTCCGGGCTGAAGCTGGTGGCCGAGCTACCTTCCGGATAGAGGATAAACAGCTGA---------------------------------------------------- acataccctgtcagcttcctcaccataactcgatgcctggccgccaccagCACCATGGTGATCTGAGCAATGTGCGGGCAGAGACAGATGGTAAAGCTACTTTTCAACTAGAGGACAGACAGCTTAGAGTACTTAACTAGAGAGTGCATATGAAGGGCAGATGAATCTGACTCTTTTC Alignment from Exonerate_protein2genome CACCGGGGAGATCTGGGCAATGTCCGGGCTGAAGCTGGTGGCCGAGCTACCTTCCGGATAGAGGATAAACAGCTGAAG acataccctgtcagcttcctcaccataactcgatgcctggccgccaccagCACCATGGTGATCTGAGCAATGTGCGGGCAGAGACAGATGGTAAAGCTACTTTTCAACTAGAGGACAGACAGCTTAGAgtacttaactagagagtgcatatgaagggcagatgaatctgactcttttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CACCGGGGAGATCTGGGCAATGTCCGGGCTGAAGCTGGTGGCCGAGCTACCTTCCGGATAGAGGATAAACAGCTGAAG acataccctgtcagcttcctcaccataactcgatgcctggccgccaccagCACCATGGTGATCTGAGCAATGTGCGGGCAGAGACAGATGGTAAAGCTACTTTTCAACTAGAGGACAGACAGCTTAGAgtacttaactagagagtgcatatgaagggcagatgaatctgactcttttc #### Ccs_ID663_5 --> 1 - 0 Original Alignment cTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtgttgaacaaaattcttagccagttcatttcttcacgttcgtcttagcTGTGGGGATCACTTCAATCCAGAAGGGGGCTCTCCTGGTGGCCCTCAGGATATAGATGGGgtaagactttagattaagctctcatcccagagagaggagccacaggttca Alignment from CESAR cTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtgttgaacaaaattcttagccagttcatttcttcacgttcgtcttagcTGTGGGGATCACTTCAATCCAGAAGGGGGCTCTCCTGGTGGCCCTCAGGATATAGATGGGgtaagactttagattaagctctcatcccagagagaggagccacaggttca Alignment from Spaln_aa2Genome CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtgttgaacaaaattcttagccagttcatttcttcacgttcgtcttagCTGTGGGGATCACTTCAATCCAGAAGGGGGCTCTCCTGGTGGCCCTCAGGATATAGATGGGgtaagactttagattaagctctcatcccagagagaggagccacaggttca Alignment from Spaln_nt2Genome CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtgttgaacaaaattcttagccagttcatttcttcacgttcgtcttagCTGTGGGGATCACTTCAATCCAGAAGGGGGCTCTCCTGGTGGCCCTCAGGATATAGATGGGgtaagactttagattaagctctcatcccagagagaggagccacaggttca Alignment from Pairagon CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtgttgaacaaaattcttagccagttcatttcttcacgttcgtcttagCTGTGGGGATCACTTCAATCCAGAAGGGGGCTCTCCTGGTGGCCCTCAGGATATAGATGGGgtaagactttagattaagctctcatcccagagagaggagccacaggttca Alignment from Exonerate_protein2genome CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtgttgaacaaaattcttagccagttcatttcttcacgttcgtcttagCTGTGGGGATCACTTCAATCCAGAAGGGGGCTCTCCTGGTGGCCCTCAGGATATAGATGGGgtaagactttagattaagctctcatcccagagagaggagccacaggttca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtgttgaacaaaattcttagccagttcatttcttcacgttcgtcttagCTGTGGGGATCACTTCAATCCAGAAGGGGGCTCTCCTGGTGGCCCTCAGGATATAGATGGGgtaagactttagattaagctctcatcccagagagaggagccacaggttca #### Ccs_ID665_3 --> 2 - 1 Original Alignment gtGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAc ggaagctgactgtacatgatagttgattagttttttttttctctttccaggcGTACAAAATGTGGATGTTCAATTGGAGAATCAGATGAAACTGGTGCAGTCAACCCTGCCCAGCCAAGAAGTCCAGGCACTCATACAGAGCTCAGGGAGACAGGCTCTACTGAGGGGAATAGGGAGTAGCCAATTAcgtatcctgtcctggtgcaagtatatgaccactgtcatctatctatagatg Alignment from CESAR gtGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAc ggaagctgactgtacatgatagttgattagttttttttttctctttccaggcGTACAAAATGTGGATGTTCAATTGGAGAATCAGATGAAACTGGTGCAGTCAACCCTGCCCAGCCAAGAAGTCCAGGCACTCATACAGAGCTCAGGGAGACAGGCTCTACTGAGGGGAATAGGGAGTAGCCAATTAcgtatcctgtcctggtgcaagtatatgaccactgtcatctatctatagatg Alignment from Spaln_aa2Genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagctgactgtacatgatagttgattagttttttttttctctttccagGCGTACAAAATGTGGATGTTCAATTGGAGAATCAGATGAAACTGGTGCAGTCAACCCTGCCCAGCCAAGAAGTCCAGGCACTCATACAGAGCTCAGGGAGACAGGCTCTACTGAGGGGAATAGGGAGTAGCCAATTACgtatcctgtcctggtgcaagtatatgaccactgtcatctatctatagatg Alignment from Spaln_nt2Genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagctgactgtacatgatagttgattagttttttttttctctttccagGCGTACAAAATGTGGATGTTCAATTGGAGAATCAGATGAAACTGGTGCAGTCAACCCTGCCCAGCCAAGAAGTCCAGGCACTCATACAGAGCTCAGGGAGACAGGCTCTACTGAGGGGAATAGGGAGTAGCCAATTACgtatcctgtcctggtgcaagtatatgaccactgtcatctatctatagatg Alignment from Pairagon GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagctgactgtacatgatagttgattagttttttttttctctttccagGCGTACAAAATGTGGATGTTCAATTGGAGAATCAGATGAAACTGGTGCAGTCAACCCTGCCCAGCCAAGAAGTCCAGGCACTCATACAGAGCTCAGGGAGACAGGCTCTACTGAGGGGAATAGGGAGTAGCCAATTACgtatcctgtcctggtgcaagtatatgaccactgtcatctatctatagatg Alignment from Exonerate_protein2genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagctgactgtacatgatagttgattagttttttttttctctttccagGCGTACAAAATGTGGATGTTCAATTGGAGAATCAGATGAAACTGGTGCAGTCAACCCTGCCCAGCCAAGAAGTCCAGGCACTCATACAGAGCTCAGGGAGACAGGCTCTACTGAGGGGAATAGGGAGTAGCCAATTACgtatcctgtcctggtgcaagtatatgaccactgtcatctatctatagatg Alignment from Exonerate_coding2genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagctgactgtacatgatagttgattagttttttttttctctttccagGCGTACAAAATGTGGATGTTCAATTGGAGAATCAGATGAAACTGGTGCAGTCAACCCTGCCCAGCCAAGAAGTCCAGGCACTCATACAGAGCTCAGGGAGACAGGCTCTACTGAGGGGAATAGGGAGTAGCCAATTACgtatcctgtcctggtgcaagtatatgaccactgtcatctatctatagatg Alignment from GeneWise GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagctgactgtacatgatagttgattagttttttttttctctttccagGCGTACAAAATGTGGATGTTCAATTGGAGAATCAGATGAAACTGGTGCAGTCAACCCTGCCCAGCCAAGAAGTCCAGGCACTCATACAGAGCTCAGGGAGACAGGCTCTACTGAGGGGAATAGGGAGTAGCCAATTACgtatcctgtcctggtgcaagtatatgaccactgtcatctatctatagatg #### Cd274_ID6269_2 --> 2 - 1 Original Alignment cgTTTACTATCACGGCTCCAAAGGACTTGTACGTGGTGGAGTATGGCAGCAACGTCACGATGGAGTGCAGATTCCCTGTAGAACGGGAGCTGGACCTGCTTGCGTTAGTGGTGTACTGGGAAAAGGAAGATGAGCAAGTGATTCAGTTTGTGGCAGGAGAGGAGGACCTTAAGCCTCAGCACAGCAACTTCAGGGGGAGAGCCTCGCTGCCAAAGGACCAGCTTTTGAAGGGAAATGCTGCCCTTCAGATCACAGACGTCAAGCTGCAGGACGCAGGCGTTTACTGCTGCATAATCAGCTACGGTGGTGCGGACTACAAGCGAATCACGCTGAAAGTCAATg tagtaatgacatgatcatactgcactccttattcctttctttccccctagcaTTCACTATAATAGCACCAAGAGATCTTTATGTTGTTGAGTATGGCAGTAACATCACAATGGAGTGCAGGTTTCCTGTTGAGTGGGAACTTGACTTACTGGGACTTGTGGTATACTGGGAGAAGGAGGACAGGCAAGTAATGCAGTTTGTTGCAGGTGAAGAAGGCCTTAAGCCTCAGCACACGAATTTCAGGAGTAGAGCCTCTCTGCCCAAGGATCAGCTACTGAAGGGAAATGCTGTACTTCAGATTACGGATGTCAAATTGCAGGATGTAGGTGTCCACTGTTGCATAATTAGCTATGGTGGTGCAGACTACAAGCATATAACACTTAAGGTCAACggtgagcgaggatgatcatctgatgtcttagaaaaaactggaactcatatg Alignment from CESAR cgTTTACTATCACGGCTCCAAAGGACTTGTACGTGGTGGAGTATGGCAGCAACGTCACGATGGAGTGCAGATTCCCTGTAGAACGGGAGCTGGACCTGCTTGCGTTAGTGGTGTACTGGGAAAAGGAAGATGAGCAAGTGATTCAGTTTGTGGCAGGAGAGGAGGACCTTAAGCCTCAGCACAGCAACTTCAGGGGGAGAGCCTCGCTGCCAAAGGACCAGCTTTTGAAGGGAAATGCTGCCCTTCAGATCACAGACGTCAAGCTGCAGGACGCAGGCGTTTACTGCTGCATAATCAGCTACGGTGGTGCGGACTACAAGCGAATCACGCTGAAAGTCAATg tagtaatgacatgatcatactgcactccttattcctttctttccccctagcaTTCACTATAATAGCACCAAGAGATCTTTATGTTGTTGAGTATGGCAGTAACATCACAATGGAGTGCAGGTTTCCTGTTGAGTGGGAACTTGACTTACTGGGACTTGTGGTATACTGGGAGAAGGAGGACAGGCAAGTAATGCAGTTTGTTGCAGGTGAAGAAGGCCTTAAGCCTCAGCACACGAATTTCAGGAGTAGAGCCTCTCTGCCCAAGGATCAGCTACTGAAGGGAAATGCTGTACTTCAGATTACGGATGTCAAATTGCAGGATGTAGGTGTCCACTGTTGCATAATTAGCTATGGTGGTGCAGACTACAAGCATATAACACTTAAGGTCAACggtgagcgaggatgatcatctgatgtcttagaaaaaactggaactcatatg Alignment from Spaln_aa2Genome CGTTTACTATCACGGCTCCAAAGGACTTGTACGTGGTGGAGTATGGCAGCAACGTCACGATGGAGTGCAGATTCCCTGTAGAACGGGAGCTGGACCTGCTTGCGTTAGTGGTGTACTGGGAAAAGGAAGATGAGCAAGTGATTCAGTTTGTGGCAGGAGAGGAGGACCTTAAGCCTCAGCACAGCAACTTCAGGGGGAGAGCCTCGCTGCCAAAGGACCAGCTTTTGAAGGGAAATGCTGCCCTTCAGATCACAGACGTCAAGCTGCAGGACGCAGGCGTTTACTGCTGCATAATCAGCTACGGTGGTGCGGACTACAAGCGAATCACGCTGAAAGTCAATG tagtaatgacatgatcatactgcactccttattcctttctttccccctagCATTCACTATAATAGCACCAAGAGATCTTTATGTTGTTGAGTATGGCAGTAACATCACAATGGAGTGCAGGTTTCCTGTTGAGTGGGAACTTGACTTACTGGGACTTGTGGTATACTGGGAGAAGGAGGACAGGCAAGTAATGCAGTTTGTTGCAGGTGAAGAAGGCCTTAAGCCTCAGCACACGAATTTCAGGAGTAGAGCCTCTCTGCCCAAGGATCAGCTACTGAAGGGAAATGCTGTACTTCAGATTACGGATGTCAAATTGCAGGATGTAGGTGTCCACTGTTGCATAATTAGCTATGGTGGTGCAGACTACAAGCATATAACACTTAAGGTCAACGgtgagcgaggatgatcatctgatgtcttagaaaaaactggaactcatatg Alignment from Spaln_nt2Genome CGTTTACTATCACGGCTCCAAAGGACTTGTACGTGGTGGAGTATGGCAGCAACGTCACGATGGAGTGCAGATTCCCTGTAGAACGGGAGCTGGACCTGCTTGCGTTAGTGGTGTACTGGGAAAAGGAAGATGAGCAAGTGATTCAGTTTGTGGCAGGAGAGGAGGACCTTAAGCCTCAGCACAGCAACTTCAGGGGGAGAGCCTCGCTGCCAAAGGACCAGCTTTTGAAGGGAAATGCTGCCCTTCAGATCACAGACGTCAAGCTGCAGGACGCAGGCGTTTACTGCTGCATAATCAGCTACGGTGGTGCGGACTACAAGCGAATCACGCTGAAAGTCAATG tagtaatgacatgatcatactgcactccttattcctttctttccccctagCATTCACTATAATAGCACCAAGAGATCTTTATGTTGTTGAGTATGGCAGTAACATCACAATGGAGTGCAGGTTTCCTGTTGAGTGGGAACTTGACTTACTGGGACTTGTGGTATACTGGGAGAAGGAGGACAGGCAAGTAATGCAGTTTGTTGCAGGTGAAGAAGGCCTTAAGCCTCAGCACACGAATTTCAGGAGTAGAGCCTCTCTGCCCAAGGATCAGCTACTGAAGGGAAATGCTGTACTTCAGATTACGGATGTCAAATTGCAGGATGTAGGTGTCCACTGTTGCATAATTAGCTATGGTGGTGCAGACTACAAGCATATAACACTTAAGGTCAACGgtgagcgaggatgatcatctgatgtcttagaaaaaactggaactcatatg Alignment from Pairagon CGTTTACTATCACGGCTCCAAAGGACTTGTACGTGGTGGAGTATGGCAGCAACGTCACGATGGAGTGCAGATTCCCTGTAGAACGGGAGCTGGACCTGCTTGCGTTAGTGGTGTACTGGGAAAAGGAAGATGAGCAAGTGATTCAGTTTGTGGCAGGAGAGGAGGACCTTAAGCCTCAGCACAGCAACTTCAGGGGGAGAGCCTCGCTGCCAAAGGACCAGCTTTTGAAGGGAAATGCTGCCCTTCAGATCACAGACGTCAAGCTGCAGGACGCAGGCGTTTACTGCTGCATAATCAGCTACGGTGGTGCGGACTACAAGCGAATCACGCTGAAAGTCAATG tagtaatgacatgatcatactgcactccttattcctttctttccccctagCATTCACTATAATAGCACCAAGAGATCTTTATGTTGTTGAGTATGGCAGTAACATCACAATGGAGTGCAGGTTTCCTGTTGAGTGGGAACTTGACTTACTGGGACTTGTGGTATACTGGGAGAAGGAGGACAGGCAAGTAATGCAGTTTGTTGCAGGTGAAGAAGGCCTTAAGCCTCAGCACACGAATTTCAGGAGTAGAGCCTCTCTGCCCAAGGATCAGCTACTGAAGGGAAATGCTGTACTTCAGATTACGGATGTCAAATTGCAGGATGTAGGTGTCCACTGTTGCATAATTAGCTATGGTGGTGCAGACTACAAGCATATAACACTTAAGGTCAACGgtgagcgaggatgatcatctgatgtcttagaaaaaactggaactcatatg Alignment from Exonerate_protein2genome CGTTTACTATCACGGCTCCAAAGGACTTGTACGTGGTGGAGTATGGCAGCAACGTCACGATGGAGTGCAGATTCCCTGTAGAACGGGAGCTGGACCTGCTTGCGTTAGTGGTGTACTGGGAAAAGGAAGATGAGCAAGTGATTCAGTTTGTGGCAGGAGAGGAGGACCTTAAGCCTCAGCACAGCAACTTCAGGGGGAGAGCCTCGCTGCCAAAGGACCAGCTTTTGAAGGGAAATGCTGCCCTTCAGATCACAGACGTCAAGCTGCAGGACGCAGGCGTTTACTGCTGCATAATCAGCTACGGTGGTGCGGACTACAAGCGAATCACGCTGAAAGTCAATG tagtaatgacatgatcatactgcactccttattcctttctttccccctagCATTCACTATAATAGCACCAAGAGATCTTTATGTTGTTGAGTATGGCAGTAACATCACAATGGAGTGCAGGTTTCCTGTTGAGTGGGAACTTGACTTACTGGGACTTGTGGTATACTGGGAGAAGGAGGACAGGCAAGTAATGCAGTTTGTTGCAGGTGAAGAAGGCCTTAAGCCTCAGCACACGAATTTCAGGAGTAGAGCCTCTCTGCCCAAGGATCAGCTACTGAAGGGAAATGCTGTACTTCAGATTACGGATGTCAAATTGCAGGATGTAGGTGTCCACTGTTGCATAATTAGCTATGGTGGTGCAGACTACAAGCATATAACACTTAAGGTCAACGgtgagcgaggatgatcatctgatgtcttagaaaaaactggaactcatatg Alignment from Exonerate_coding2genome GCGTTTACTATCACGGCTCCAAAGGACTTGTACGTGGTGGAGTATGGCAGCAACGTCACGATGGAGTGCAGATTCCCTGTAGAACGGGAGCTGGACCTGCTTGCGTTAGTGGTGTACTGGGAAAAGGAAGATGAGCAAGTGATTCAGTTTGTGGCAGGAGAGGAGGACCTTAAGCCTCAGCACAGCAACTTCAGGGGGAGAGCCTCGCTGCCAAAGGACCAGCTTTTGAAGGGAAATGCTGCCCTTCAGATCACAGACGTCAAGCTGCAGGACGCAGGCGTTTACTGCTGCATAATCAGCTACGGTGGTGCGGACTACAAGCGAATCACGCTGAAAGTCAATG tagtaatgacatgatcatactgcactccttattcctttctttccccctaGCATTCACTATAATAGCACCAAGAGATCTTTATGTTGTTGAGTATGGCAGTAACATCACAATGGAGTGCAGGTTTCCTGTTGAGTGGGAACTTGACTTACTGGGACTTGTGGTATACTGGGAGAAGGAGGACAGGCAAGTAATGCAGTTTGTTGCAGGTGAAGAAGGCCTTAAGCCTCAGCACACGAATTTCAGGAGTAGAGCCTCTCTGCCCAAGGATCAGCTACTGAAGGGAAATGCTGTACTTCAGATTACGGATGTCAAATTGCAGGATGTAGGTGTCCACTGTTGCATAATTAGCTATGGTGGTGCAGACTACAAGCATATAACACTTAAGGTCAACGgtgagcgaggatgatcatctgatgtcttagaaaaaactggaactcatatg Alignment from GeneWise CGTTTACTATCACGGCTCCAAAGGACTTGTACGTGGTGGAGTATGGCAGCAACGTCACGATGGAGTGCAGATTCCCTGTAGAACGGGAGCTGGACCTGCTTGCGTTAGTGGTGTACTGGGAAAAGGAAGATGAGCAAGTGATTCAGTTTGTGGCAGGAGAGGAGGACCTTAAGCCTCAGCACAGCAACTTCAGGGGGAGAGCCTCGCTGCCAAAGGACCAGCTTTTGAAGGGAAATGCTGCCCTTCAGATCACAGACGTCAAGCTGCAGGACGCAGGCGTTTACTGCTGCATAATCAGCTACGGTGGTGCGGACTACAAGCGAATCACGCTGAAAGTCAATG tagtaatgacatgatcatactgcactccttattcctttctttccccctagCATTCACTATAATAGCACCAAGAGATCTTTATGTTGTTGAGTATGGCAGTAACATCACAATGGAGTGCAGGTTTCCTGTTGAGTGGGAACTTGACTTACTGGGACTTGTGGTATACTGGGAGAAGGAGGACAGGCAAGTAATGCAGTTTGTTGCAGGTGAAGAAGGCCTTAAGCCTCAGCACACGAATTTCAGGAGTAGAGCCTCTCTGCCCAAGGATCAGCTACTGAAGGGAAATGCTGTACTTCAGATTACGGATGTCAAATTGCAGGATGTAGGTGTCCACTGTTGCATAATTAGCTATGGTGGTGCAGACTACAAGCATATAACACTTAAGGTCAACGgtgagcgaggatgatcatctgatgtcttagaaaaaactggaactcatatg #### Cd274_ID6274_5 --> 2 - 1 Original Alignment tgAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATg gtttgccctcactaacatccgaactcacgggtttacttttctgttttcagtgAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATATAAGCTCAAAAAACCGGAATggtggacggataaagttcagtcattttggtggccatccaataccagaataa Alignment from CESAR tgAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATg gtttgccctcactaacatccgaactcacgggtttacttttctgttttcagtgAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATATAAGCTCAAAAAACCGGAATggtggacggataaagttcagtcattttggtggccatccaataccagaataa Alignment from Spaln_aa2Genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATG gtttgccctcactaacatccgaactcacgggtttacttttctgttttcagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATATAAGCTCAAAAAACCGGAATGgtggacggataaagttcagtcattttggtggccatccaataccagaataa Alignment from Spaln_nt2Genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATG gtttgccctcactaacatccgaactcacgggtttacttttctgttttcagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATATAAGCTCAAAAAACCGGAATGgtggacggataaagttcagtcattttggtggccatccaataccagaataa Alignment from Pairagon TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATG gtttgccctcactaacatccgaactcacgggtttacttttctgttttcagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATATAAGCTCAAAAAACCGGAATGgtggacggataaagttcagtcattttggtggccatccaataccagaataa Alignment from Exonerate_protein2genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAAT gtttgccctcactaacatccgaactcacgggtttacttttctgttttcagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATATAAGCTCAAAAAACCGGAATggtggacggataaagttcagtcattttggtggccatccaataccagaataa Alignment from Exonerate_coding2genome TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAAT gtttgccctcactaacatccgaactcacgggtttacttttctgttttcagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATATAAGCTCAAAAAACCGGAATggtggacggataaagttcagtcattttggtggccatccaataccagaataa Alignment from GeneWise TGAGAATGCTAGATGTGGAGAAATGTGGCGTTGAAGATACAAGCTCAAAAAACCGAAATGATACACAATTCGAGGAGACG gtttgccctcactaacatccgaactcacgggtttacttttctgttttcagTGAGGATGCTGGAT---GAGAAATGCAGTGTTGAGCATATAAGCTCAAAAAACCGGAATGGTGGACGGATAAAGTTCAGTcattttggtggccatccaataccagaataa #### Cd6_ID3017_7 --> 2 - 1 Original Alignment aaTCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACg attaaatatgagtaccattctatactaagcaatctctccttccctgacagaaTCCACTGTGCCAGTAAGTGTAAAAGACAAAGAATCACAAGGACTGACACTTCTAATTCTTTGTAATGTTTTGGGGATTCTTCTCCTCATCTCAACAATGTTTGTTGTTATTCTTCTCTCACGGGCAAAGGGACAGTATggtaggtactagtctaattgaacttgacccactgacatttgatgaaataac Alignment from CESAR aaTCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACg attaaatatgagtaccattctatactaagcaatctctccttccctgacagaaTCCACTGTGCCAGTAAGTGTAAAAGACAAAGAATCACAAGGACTGACACTTCTAATTCTTTGTAATGTTTTGGGGATTCTTCTCCTCATCTCAACAATGTTTGTTGTTATTCTTCTCTCACGGGCAAAGGGACAGTATggtaggtactagtctaattgaacttgacccactgacatttgatgaaataac Alignment from Spaln_aa2Genome AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG attaaatatgagtaccattctatactaagcaatctctccttccctgacagAATCCACTGTGCCAGTAAGTGTAAAAGACAAAGAATCACAAGGACTGACACTTCTAATTCTTTGTAATGTTTTGGGGATTCTTCTCCTCATCTCAACAATGTTTGTTGTTATTCTTCTCTCACGGGCAAAGGGACAGTATGgtaggtactagtctaattgaacttgacccactgacatttgatgaaataac Alignment from Spaln_nt2Genome AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG attaaatatgagtaccattctatactaagcaatctctccttccctgacagAATCCACTGTGCCAGTAAGTGTAAAAGACAAAGAATCACAAGGACTGACACTTCTAATTCTTTGTAATGTTTTGGGGATTCTTCTCCTCATCTCAACAATGTTTGTTGTTATTCTTCTCTCACGGGCAAAGGGACAGTATGgtaggtactagtctaattgaacttgacccactgacatttgatgaaataac Alignment from Pairagon AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG attaaatatgagtaccattctatactaagcaatctctccttccctgacagAATCCACTGTGCCAGTAAGTGTAAAAGACAAAGAATCACAAGGACTGACACTTCTAATTCTTTGTAATGTTTTGGGGATTCTTCTCCTCATCTCAACAATGTTTGTTGTTATTCTTCTCTCACGGGCAAAGGGACAGTATGgtaggtactagtctaattgaacttgacccactgacatttgatgaaataac Alignment from Exonerate_protein2genome AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG attaaatatgagtaccattctatactaagcaatctctccttccctgacagAATCCACTGTGCCAGTAAGTGTAAAAGACAAAGAATCACAAGGACTGACACTTCTAATTCTTTGTAATGTTTTGGGGATTCTTCTCCTCATCTCAACAATGTTTGTTGTTATTCTTCTCTCACGGGCAAAGGGACAGTATGgtaggtactagtctaattgaacttgacccactgacatttgatgaaataac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise -----GTTCCAGTCACGATAGAATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG attaaatatgagtaccattctatactaagCAATCTCTCCTTCCCTGACAGAATCCACTGTGCCAGTAAGTGTAAAAGACAAAGAATCACAAGGACTGACACTTCTAATTCTTTGTAATGTTTTGGGGATTCTTCTCCTCATCTCAACAATGTTTGTTGTTATTCTTCTCTCACGGGCAAAGGGACAGTATGgtaggtactagtctaattgaacttgacccactgacatttgatgaaataac #### Cd6_ID3022_2 --> 2 - 1 Original Alignment gtCTCCCATCTCCAGCCCCCTCTGGCCAGCACAAAAATGGCACCATCCCGAACATGACCTTGGACCTAg ggcttcacagatgcattttaccaaccaatatttcctcccgtctcttctagggATATCATCACCATCGGCTGCTGGACAGTATAAAAATGGAACC---CCAAACATG---TTGGATGTTggtgagtaaactaactttctacaagtatcagattcctaggatcatgtagta Alignment from CESAR gtCTCCCATCTCCAGCCCCCTCTGGCCAGCACAAAAATGGCACCATCCCGAACATGACCTTGGACCTAg ggcttcacagatgcattttaccaaccaatatttcctcccgtctcttctagggATATCATCACCATCGGCTGCTGGACAGTATAAAAATGGAACC---CCAAACATG---TTGGATGTTggtgagtaaactaactttctacaagtatcagattcctaggatcatgtagta Alignment from Spaln_aa2Genome GTCTCCCATCTCCAGCCCCCTCTGGCCAGCACAAAAATGGCACCATCCCGAACATGACCTTGGACCTAG ggcttcacagatgcattttaccaaccaatatttcctcccgtctcttctagGGATATCATCACCATCGGCTGCTGGACAGTATAAAAATGGAACC---CCAAACATG---TTGGATGTTGgtgagtaaactaactttctacaagtatcagattcctaggatcatgtagta Alignment from Spaln_nt2Genome GTCTCCCATCTCCAGCCCCCTCTGGCCAGCACAAAAATGGCACCATCCCGAACATGACCTTGGACCTAG ggcttcacagatgcattttaccaaccaatatttcctcccgtctcttctagGGATATCATCACCATCGGCTGCTGGACAGTATAAAAATGGAAC---CCCAAACATG---TTGGATGTTGgtgagtaaactaactttctacaagtatcagattcctaggatcatgtagta Alignment from Pairagon ggcttcacagatgcattttaccaaccaatatttcctcccgtctcttctagggatatcatcaccatcggctgctggacagtataaaaatggaaccccaaacatgttggatgttggtgagtaaactaactttctacaagtatcagattcctaggatcatgtagta Alignment from Exonerate_protein2genome ggcttcacagatgcattttaccaaccaatatttcctcccgtctcttctagggatatcatcaccatcggctgctggacagtataaaaatggaaccccaaacatgttggatgttggtgagtaaactaactttctacaagtatcagattcctaggatcatgtagta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ggcttcacagatgcattttaccaaccaatatttcctcccgtctcttctagggatatcatcaccatcggctgctggacagtataaaaatggaaccccaaacatgttggatgttggtgagtaaactaactttctacaagtatcagattcctaggatcatgtagta #### Cdc37l1_ID6195_2 --> 0 - 0 Original Alignment ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG tggttcattatcactgtttccgactaacatctcccctctcttgcaaacagATGTATAGCCATGAATTTGAATTAGCCTGTCAAATACAAAAAGGGTTTGTTAAAAGTTCTGTGGCATGTAAGTGGAATCTTGCTGAAGCTCAGGAGAAGCTAGGCAGTTTGACACTTCACAACTCTGAGTTGTTGGATCAGAAACACGCCAAAGCTCGGACAGCAGTGTTAGAACTTAGGGAGCAAGAGGAAGAGTGGCGACAAAAGGAGGAGGCCCTATTCCACAGGGAGAGGATGTGTTTATGGAACATGGAGAGCATTAGTAAGGATGTTTTCATTAAGgtaagttcataactgcatgcttagatagacaaggctaaagccaatgcagg Alignment from CESAR ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG tggttcattatcactgtttccgactaacatctcccctctcttgcaaacagATGTATAGCCATGAATTTGAATTAGCCTGTCAAATACAAAAAGGGTTTGTTAAAAGTTCTGTGGCATGTAAGTGGAATCTTGCTGAAGCTCAGGAGAAGCTAGGCAGTTTGACACTTCACAACTCTGAGTTGTTGGATCAGAAACACGCCAAAGCTCGGACAGCAGTGTTAGAACTTAGGGAGCAAGAGGAAGAGTGGCGACAAAAGGAGGAGGCCCTATTCCACAGGGAGAGGATGTGTTTATGGAACATGGAGAGCATTAGTAAGGATGTTTTCATTAAGgtaagttcataactgcatgcttagatagacaaggctaaagccaatgcagg Alignment from Spaln_aa2Genome ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG tggttcattatcactgtttccgactaacatctcccctctcttgcaaacagATGTATAGCCATGAATTTGAATTAGCCTGTCAAATACAAAAAGGGTTTGTTAAAAGTTCTGTGGCATGTAAGTGGAATCTTGCTGAAGCTCAGGAGAAGCTAGGCAGTTTGACACTTCACAACTCTGAGTTGTTGGATCAGAAACACGCCAAAGCTCGGACAGCAGTGTTAGAACTTAGGGAGCAAGAGGAAGAGTGGCGACAAAAGGAGGAGGCCCTATTCCACAGGGAGAGGATGTGTTTATGGAACATGGAGAGCATTAGTAAGGATGTTTTCATTAAGgtaagttcataactgcatgcttagatagacaaggctaaagccaatgcagg Alignment from Spaln_nt2Genome ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG tggttcattatcactgtttccgactaacatctcccctctcttgcaaacagATGTATAGCCATGAATTTGAATTAGCCTGTCAAATACAAAAAGGGTTTGTTAAAAGTTCTGTGGCATGTAAGTGGAATCTTGCTGAAGCTCAGGAGAAGCTAGGCAGTTTGACACTTCACAACTCTGAGTTGTTGGATCAGAAACACGCCAAAGCTCGGACAGCAGTGTTAGAACTTAGGGAGCAAGAGGAAGAGTGGCGACAAAAGGAGGAGGCCCTATTCCACAGGGAGAGGATGTGTTTATGGAACATGGAGAGCATTAGTAAGGATGTTTTCATTAAGgtaagttcataactgcatgcttagatagacaaggctaaagccaatgcagg Alignment from Pairagon ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG tggttcattatcactgtttccgactaacatctcccctctcttgcaaacagATGTATAGCCATGAATTTGAATTAGCCTGTCAAATACAAAAAGGGTTTGTTAAAAGTTCTGTGGCATGTAAGTGGAATCTTGCTGAAGCTCAGGAGAAGCTAGGCAGTTTGACACTTCACAACTCTGAGTTGTTGGATCAGAAACACGCCAAAGCTCGGACAGCAGTGTTAGAACTTAGGGAGCAAGAGGAAGAGTGGCGACAAAAGGAGGAGGCCCTATTCCACAGGGAGAGGATGTGTTTATGGAACATGGAGAGCATTAGTAAGGATGTTTTCATTAAGgtaagttcataactgcatgcttagatagacaaggctaaagccaatgcagg Alignment from Exonerate_protein2genome ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG tggttcattatcactgtttccgactaacatctcccctctcttgcaaacagATGTATAGCCATGAATTTGAATTAGCCTGTCAAATACAAAAAGGGTTTGTTAAAAGTTCTGTGGCATGTAAGTGGAATCTTGCTGAAGCTCAGGAGAAGCTAGGCAGTTTGACACTTCACAACTCTGAGTTGTTGGATCAGAAACACGCCAAAGCTCGGACAGCAGTGTTAGAACTTAGGGAGCAAGAGGAAGAGTGGCGACAAAAGGAGGAGGCCCTATTCCACAGGGAGAGGATGTGTTTATGGAACATGGAGAGCATTAGTAAGGATGTTTTCATTAAGgtaagttcataactgcatgcttagatagacaaggctaaagccaatgcagg Alignment from Exonerate_coding2genome CAGATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG tggttcattatcactgtttccgactaacatctcccctctcttgcaaaCAGATGTATAGCCATGAATTTGAATTAGCCTGTCAAATACAAAAAGGGTTTGTTAAAAGTTCTGTGGCATGTAAGTGGAATCTTGCTGAAGCTCAGGAGAAGCTAGGCAGTTTGACACTTCACAACTCTGAGTTGTTGGATCAGAAACACGCCAAAGCTCGGACAGCAGTGTTAGAACTTAGGGAGCAAGAGGAAGAGTGGCGACAAAAGGAGGAGGCCCTATTCCACAGGGAGAGGATGTGTTTATGGAACATGGAGAGCATTAGTAAGGATGTTTTCATTAAGgtaagttcataactgcatgcttagatagacaaggctaaagccaatgcagg Alignment from GeneWise ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG tggttcattatcactgtttccgactaacatctcccctctcttgcaaacagATGTATAGCCATGAATTTGAATTAGCCTGTCAAATACAAAAAGGGTTTGTTAAAAGTTCTGTGGCATGTAAGTGGAATCTTGCTGAAGCTCAGGAGAAGCTAGGCAGTTTGACACTTCACAACTCTGAGTTGTTGGATCAGAAACACGCCAAAGCTCGGACAGCAGTGTTAGAACTTAGGGAGCAAGAGGAAGAGTGGCGACAAAAGGAGGAGGCCCTATTCCACAGGGAGAGGATGTGTTTATGGAACATGGAGAGCATTAGTAAGGATGTTTTCATTAAGgtaagttcataactgcatgcttagatagacaaggctaaagccaatgcagg #### Cdc37l1_ID6198_5 --> 0 - 0 Original Alignment AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA cctctctatctttgtttcagagtcatgatcttttggtaactttcttacagAAAGGTGCTTTAATGGAACAGATAGCACACCAAGCTGTTGTAATGCAGTTCATTATGGAAATGGGCAAAAACTGCAATGTAGGCCCTAGAGGCTGTCTTCGCTTGTTTTTCCAGAAAGCCAAAgtgagtagttcctttgaatgtgtagtgagtagcccaaattctgatgaatg Alignment from CESAR AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA cctctctatctttgtttcagagtcatgatcttttggtaactttcttacagAAAGGTGCTTTAATGGAACAGATAGCACACCAAGCTGTTGTAATGCAGTTCATTATGGAAATGGGCAAAAACTGCAATGTAGGCCCTAGAGGCTGTCTTCGCTTGTTTTTCCAGAAAGCCAAAgtgagtagttcctttgaatgtgtagtgagtagcccaaattctgatgaatg Alignment from Spaln_aa2Genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA cctctctatctttgtttcagagtcatgatcttttggtaactttcttacagAAAGGTGCTTTAATGGAACAGATAGCACACCAAGCTGTTGTAATGCAGTTCATTATGGAAATGGGCAAAAACTGCAATGTAGGCCCTAGAGGCTGTCTTCGCTTGTTTTTCCAGAAAGCCAAAgtgagtagttcctttgaatgtgtagtgagtagcccaaattctgatgaatg Alignment from Spaln_nt2Genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA cctctctatctttgtttcagagtcatgatcttttggtaactttcttacagAAAGGTGCTTTAATGGAACAGATAGCACACCAAGCTGTTGTAATGCAGTTCATTATGGAAATGGGCAAAAACTGCAATGTAGGCCCTAGAGGCTGTCTTCGCTTGTTTTTCCAGAAAGCCAAAgtgagtagttcctttgaatgtgtagtgagtagcccaaattctgatgaatg Alignment from Pairagon AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA cctctctatctttgtttcagagtcatgatcttttggtaactttcttacagAAAGGTGCTTTAATGGAACAGATAGCACACCAAGCTGTTGTAATGCAGTTCATTATGGAAATGGGCAAAAACTGCAATGTAGGCCCTAGAGGCTGTCTTCGCTTGTTTTTCCAGAAAGCCAAAgtgagtagttcctttgaatgtgtagtgagtagcccaaattctgatgaatg Alignment from Exonerate_protein2genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA cctctctatctttgtttcagagtcatgatcttttggtaactttcttacagAAAGGTGCTTTAATGGAACAGATAGCACACCAAGCTGTTGTAATGCAGTTCATTATGGAAATGGGCAAAAACTGCAATGTAGGCCCTAGAGGCTGTCTTCGCTTGTTTTTCCAGAAAGCCAAAgtgagtagttcctttgaatgtgtagtgagtagcccaaattctgatgaatg Alignment from Exonerate_coding2genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA cctctctatctttgtttcagagtcatgatcttttggtaactttcttacagAAAGGTGCTTTAATGGAACAGATAGCACACCAAGCTGTTGTAATGCAGTTCATTATGGAAATGGGCAAAAACTGCAATGTAGGCCCTAGAGGCTGTCTTCGCTTGTTTTTCCAGAAAGCCAAAgtgagtagttcctttgaatgtgtagtgagtagcccaaattctgatgaatg Alignment from GeneWise AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA cctctctatctttgtttcagagtcatgatcttttggtaactttcttacagAAAGGTGCTTTAATGGAACAGATAGCACACCAAGCTGTTGTAATGCAGTTCATTATGGAAATGGGCAAAAACTGCAATGTAGGCCCTAGAGGCTGTCTTCGCTTGTTTTTCCAGAAAGCCAAAgtgagtagttcctttgaatgtgtagtgagtagcccaaattctgatgaatg #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacctataccatagaacgaccagatgggtgtcttctcagaGATGTGGAGCCAGACAATGTTCTA---AGCATGAATGGTCAT---TGCTTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaggtacacttagaaattcttcatagataaattaaagacatttagttag Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacctataccatagaacgaccagatgggtgtcttctcagaGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGTCAT---TGCTTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaggtacacttagaaattcttcatagataaattaaagacatttagttag Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacctataccatagaacgaccagatgggtgtcttctcagAGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGTCAT---TGCTTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaggtacacttagaaattcttcatagataaattaaagacatttagttag Alignment from Spaln_nt2Genome ATCCTGCTGGA--CATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacctataccatagaacgaccagatgggtgtcttctcagagatgtggagccagACAATGTTCTAAGCATGAATGGTCA---TTGCTTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaggtacacttagaaattcttcatagataaattaaagacatttagttag Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTG--------------------------GCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacctataccatagaacgaccagatgggtgtcttctcagAGATGTGGAGCCAGACAA--------------------------------TGTTCTAAGCATGAATGGTCATTGCTTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaggtacacttagaaattcttcatagataaattaaagacatttagttag Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacctataccatagaacgaccagatgggtgtcttctcagAGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGTCATTGC---TTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaggtacacttagaaattcttcatagataaattaaagacatttagttag Alignment from Exonerate_coding2genome ggacacacacatacctataccatagaacgaccagatgggtgtcttctcagagatgtggagccagacaatgttctaagcatgaatggtcattgcttagctgattttggcacctgcctatgcctcaacatcaacaccaaggtaggtacacttagaaattcttcatagataaattaaagacatttagttag Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacctataccatagaacgaccagatgggtgtcttctcagAGATGTGGAGCCAGACAATGTTCTA---AGCATGAATGGTCATTGC---TTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaggtacacttagaaattcttcatagataaattaaagacatttagttag #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from Exonerate_coding2genome aatagtacctcctctacctctcagtactactctgtcactcattaccccaggtggactcatccgttccggtgggaactccagactacatctctcctgagatcctgcaggctatggaggaaggtaagggccactatggaccacaatttgattggtggtcactgggagtctgtgcctatgagctgctgtttggggaaacacccttttatgctgtatccctggtagagacttatgggaaaatcatgaaccatgaggtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG aatagtacctcctctacctctcagtactactctgtcactcattaccccagGTGGACTCATCCGTTCCGGTGGGAACTCCAGACTACATCTCTCCTGAGATCCTGCAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCCCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtaagcctggaagacccagtgaccctgggtttgtgaaagtcatctttata #### Cdc42bpg_ID1579_9 --> 0 - 2 Original Alignment GAG------ACGCTGCCACCATCCTCCCATGGTGCCTTC------------TCAGGCCACCACCTGCCATTTGTTGGCTTCACTTACACCTCAGGCag gtaggcactttgctcatggcccataactatttgtggtttttcttccacagGCAAAGACGACACTCCCACCAACTTCACATGGTTCTTTCCTCAGTGCTTTCTTCAGTCACCACCTCCCTTTCGTTGGTTTTACGTATACATCAGGCaggtatgccaagttctcaggcacttgtgacacacaagctaactctggttgcc Alignment from CESAR GAG------ACGCTGCCACCATCCTCCCATGGT------------GCCTTCTCAGGCCACCACCTGCCATTTGTTGGCTTCACTTACACCTCAGGCag gtaggcactttgctcatggcccataactatttgtggtttttcttccacagGCAAAGACGACACTCCCACCAACTTCACATGGTTCTTTCCTCAGTGCTTTCTTCAGTCACCACCTCCCTTTCGTTGGTTTTACGTATACATCAGGCaggtatgccaagttctcaggcacttgtgacacacaagctaactctggttgcc Alignment from Spaln_aa2Genome GAGACGCTGCCACCATCCTCCCATGGT------------GCCTTCTCAGGCCACCACCTGCCATTTGTTGGCTTCACTTACACCTCAGGCAG gtaggcactttgctcatggcccataactatttgtggtttttcttccacaggcaaagACGACACTCCCACCAACTTCACATGGTTCTTTCCTCAGTGCTTTCTTCAGTCACCACCTCCCTTTCGTTGGTTTTACGTATACATCAGGCAGgtatgccaagttctcaggcacttgtgacacacaagctaactctggttgcc Alignment from Spaln_nt2Genome GTCCAGA-GACGCTGCCACCATCCTCCCATGGTGCCTTC-TCAG-----------GCCACCACCTGCCATTTGTTGGCTTCACTTACACCTCAGGCAG gtaggcactttgctcatggcccataactatttgtggtttttcttccacagGCAAAGACGACACTCCCACCAACTTCACATGGTTCTTTCCTCAGTGCTTTCTTCAGTCACCACCTCCCTTTCGTTGGTTTTACGTATACATCAGGCAGgtatgccaagttctcaggcacttgtgacacacaagctaactctggttgcc Alignment from Pairagon GAGACGCTGCCACCATCCTCCCATG------------GTGCCTTCTCAGGCCACCACCTGCCATTTGTTGGCTTCACTTACACCTCAGGCAG gtaggcactttgctcatggcccataactatttgtggtttttcttccacaggcaaagACGACACTCCCACCAACTTCACATGGTTCTTTCCTCAGTGCTTTCTTCAGTCACCACCTCCCTTTCGTTGGTTTTACGTATACATCAGGCAGgtatgccaagttctcaggcacttgtgacacacaagctaactctggttgcc Alignment from Exonerate_protein2genome GAGACGCTGCCACCATCCTCCCATGGT------------GCCTTCTCAGGCCACCACCTGCCATTTGTTGGCTTCACTTACACCTCAGGCAG gtaggcactttgctcatggcccataactatttgtggtttttcttccacaggcaaagACGACACTCCCACCAACTTCACATGGTTCTTTCCTCAGTGCTTTCTTCAGTCACCACCTCCCTTTCGTTGGTTTTACGTATACATCAGGCAGgtatgccaagttctcaggcacttgtgacacacaagctaactctggttgcc Alignment from Exonerate_coding2genome gtaggcactttgctcatggcccataactatttgtggtttttcttccacaggcaaagacgacactcccaccaacttcacatggttctttcctcagtgctttcttcagtcaccacctccctttcgttggttttacgtatacatcaggcaggtatgccaagttctcaggcacttgtgacacacaagctaactctggttgcc Alignment from GeneWise GAGACGCTGCCACCATCCTCCCATGGT------------GCCTTCTCAGGCCACCACCTGCCATTTGTTGGCTTCACTTACACCTCAGGCAG gtaggcactttgctcatggcccataactatttgtggtttttcttccacaggcaaagACGACACTCCCACCAACTTCACATGGTTCTTTCCTCAGTGCTTTCTTCAGTCACCACCTCCCTTTCGTTGGTTTTACGTATACATCAGGCAGgtatgccaagttctcaggcacttgtgacacacaagctaactctggttgcc #### Cdc42bpg_ID1580_10 --> 1 - 1 Original Alignment cCCCTTTGATGTGCAGAGCTCAGAGCTAATGGCTGCCCCAGAGGGGACGCCCCACTGTGTGGAGCAGGTGAAAGTGGAGCTCAGCCACAAGTGTCAAg aagaacacttatcctgacacatgtctaaataaccatcacttatttcctagcCCTTTTGATGTGCAGAGCTCAGAGCTAATGACTACCCCAGGAGGGACACCACACTGTGTGGAGCAAGTGAAAGTGGAGCTCAGCCATAAGTGTCAAggtaagctgtataatcattagctcttcctaactgttcgggcactacaattg Alignment from CESAR cCCCTTTGATGTGCAGAGCTCAGAGCTAATGGCTGCCCCAGAGGGGACGCCCCACTGTGTGGAGCAGGTGAAAGTGGAGCTCAGCCACAAGTGTCAAg aagaacacttatcctgacacatgtctaaataaccatcacttatttcctagcCCTTTTGATGTGCAGAGCTCAGAGCTAATGACTACCCCAGGAGGGACACCACACTGTGTGGAGCAAGTGAAAGTGGAGCTCAGCCATAAGTGTCAAggtaagctgtataatcattagctcttcctaactgttcgggcactacaattg Alignment from Spaln_aa2Genome CCCCTTTGATGTGCAGAGCTCAGAGCTAATGGCTGCCCCAGAGGGGACGCCCCACTGTGTGGAGCAGGTGAAAGTGGAGCTCAGCCACAAGTGTCAAG aagaacacttatcctgacacatgtctaaataaccatcacttatttcctagCCCTTTTGATGTGCAGAGCTCAGAGCTAATGACTACCCCAGGAGGGACACCACACTGTGTGGAGCAAGTGAAAGTGGAGCTCAGCCATAAGTGTCAAGgtaagctgtataatcattagctcttcctaactgttcgggcactacaattg Alignment from Spaln_nt2Genome CCCCTTTGATGTGCAGAGCTCAGAGCTAATGGCTGCCCCAGAGGGGACGCCCCACTGTGTGGAGCAGGTGAAAGTGGAGCTCAGCCACAAGTGTCAAG aagaacacttatcctgacacatgtctaaataaccatcacttatttcctagCCCTTTTGATGTGCAGAGCTCAGAGCTAATGACTACCCCAGGAGGGACACCACACTGTGTGGAGCAAGTGAAAGTGGAGCTCAGCCATAAGTGTCAAGgtaagctgtataatcattagctcttcctaactgttcgggcactacaattg Alignment from Pairagon CCCCTTTGATGTGCAGAGCTCAGAGCTAATGGCTGCCCCAGAGGGGACGCCCCACTGTGTGGAGCAGGTGAAAGTGGAGCTCAGCCACAAGTGTCAAG aagaacacttatcctgacacatgtctaaataaccatcacttatttcctagCCCTTTTGATGTGCAGAGCTCAGAGCTAATGACTACCCCAGGAGGGACACCACACTGTGTGGAGCAAGTGAAAGTGGAGCTCAGCCATAAGTGTCAAGgtaagctgtataatcattagctcttcctaactgttcgggcactacaattg Alignment from Exonerate_protein2genome CCCCTTTGATGTGCAGAGCTCAGAGCTAATGGCTGCCCCAGAGGGGACGCCCCACTGTGTGGAGCAGGTGAAAGTGGAGCTCAGCCACAAGTGTCAAG aagaacacttatcctgacacatgtctaaataaccatcacttatttcctagCCCTTTTGATGTGCAGAGCTCAGAGCTAATGACTACCCCAGGAGGGACACCACACTGTGTGGAGCAAGTGAAAGTGGAGCTCAGCCATAAGTGTCAAGgtaagctgtataatcattagctcttcctaactgttcgggcactacaattg Alignment from Exonerate_coding2genome aagaacacttatcctgacacatgtctaaataaccatcacttatttcctagcccttttgatgtgcagagctcagagctaatgactaccccaggagggacaccacactgtgtggagcaagtgaaagtggagctcagccataagtgtcaaggtaagctgtataatcattagctcttcctaactgttcgggcactacaattg Alignment from GeneWise CCCCTTTGATGTGCAGAGCTCAGAGCTAATGGCTGCCCCAGAGGGGACGCCCCACTGTGTGGAGCAGGTGAAAGTGGAGCTCAGCCACAAGTGTCAAG aagaacacttatcctgacacatgtctaaataaccatcacttatttcctagCCCTTTTGATGTGCAGAGCTCAGAGCTAATGACTACCCCAGGAGGGACACCACACTGTGTGGAGCAAGTGAAAGTGGAGCTCAGCCATAAGTGTCAAGgtaagctgtataatcattagctcttcctaactgttcgggcactacaattg #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagaaACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagaaACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagAAACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagAAACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagAAACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagAAACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from Exonerate_coding2genome aatgttcataatttagggcaatgacggacttggtcatttatctactttagaaaccttgaaggacagtgaggcttctcttgcccaagctgatggccctgatgctagaagccctgtcccaaacattcagttacagcaggaaaaggatcgccttcaacaggtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG aatgttcataatttagggcaatgacggacttggtcatttatctactttagAAACCTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGCCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAAAAGGATCGCCTTCAACAGgtgaccatagtggtgagaattatgcagcgtgtcatttgttcatatatgcc #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gagcccattgggtaatgaggattaacatagagtgtttccctctgaaacagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGTGAACGGCGGGAAACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTAAGTtggtaagcctacacagctgatgcaaccaacaatattgtgggctcactgctga Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gagcccattgggtaatgaggattaacatagagtgtttccctctgaaacagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGTGAACGGCGGGAAACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTAAGTtggtaagcctacacagctgatgcaaccaacaatattgtgggctcctcacctc Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gagcccattgggtaatgaggattaacatagagtgtttccctctgaaacagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGTGAACGGCGGGAAACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTAAGTTGgtaagcctacacagctgatgcaaccaacaatattgtgggctcactgctga Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gagcccattgggtaatgaggattaacatagagtgtttccctctgaaacagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGTGAACGGCGGGAAACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTAAGTTGgtaagcctacacagctgatgcaaccaacaatattgtgggctcactgctga Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gagcccattgggtaatgaggattaacatagagtgtttccctctgaaacagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGTGAACGGCGGGAAACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTAAGTTGgtaagcctacacagctgatgcaaccaacaatattgtgggctcactgctga Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gagcccattgggtaatgaggattaacatagagtgtttccctctgaaacagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGTGAACGGCGGGAAACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTAAGTTGgtaagcctacacagctgatgcaaccaacaatattgtgggctcactgctga Alignment from Exonerate_coding2genome gagcccattgggtaatgaggattaacatagagtgtttccctctgaaacagttggcaggtgagctggaactggagctccagactaagcaacgtctggagggtgaacggcgggaaactgagagcaactgggaggctcagattgctgacatcctaagttggtaagcctacacagctgatgcaaccaacaatattgtgggctcactgctga Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gagcccattgggtaatgaggattaacatagagtgtttccctctgaaacagTTGGCAGGTGAGCTGGAACTGGAGCTCCAGACTAAGCAACGTCTGGAGGGTGAACGGCGGGAAACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTAAGTTGgtaagcctacacagctgatgcaaccaacaatattgtgggctcactgctga #### Cdc42bpg_ID1589_19 --> 0 - 2 Original Alignment GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTG---------CAGGAGGCTCAGCGGCAGGCTGAAcg gccttcatgaggaacatctttattagtgtcttctcttacctctttaacagGATCACCAATGGAAAGCACACAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTTGCCCTTCAGTCTGCTCTGGAAACTGATATCAGGGCCAAGCAAAGTCTCCATGAGCAT---ATGCAGGTACAGGAGGCACAAAGAGCACAACGTCAGGCAGAAtggtgagattataaatgggttaggagtgaaatcctctgccaggcactgcagt Alignment from CESAR GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAG---------CGGCAGGCTGAAcg gccttcatgaggaacatctttattagtgtcttctcttacctctttaacagGATCACCAATGGAAAGCACACAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTTGCCCTTCAGTCTGCTCTGGAAACTGATATCAGGGCCAAGCAAAGTCTCCATGAGCATATG---CAGGTACAGGAGGCACAAAGAGCACAACGTCAGGCAGAAtggtgagattataaatgggttaggagtgaaatcctctgccaggcactgcagt Alignment from Spaln_aa2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gccttcatgaggaacatctttattagtgtcttctcttacctctttaacagGATCACCAATGGAAAGCACACAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTTGCCCTTCAGTCTGCTCTGGAAACTGATATCAGGGCCAAGCAAAGTCTCCATGAGCATATGCAGGTACAGGAGGCACAAAGAGCACAACGTCAGGCAGAATGgtgagattataaatgggttaggagtgaaatcctctgccaggcactgcagt Alignment from Spaln_nt2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCA---GAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAG---------CGGCAGGCTGAACG gccttcatgaggaacatctttattagtgtcttctcttacctctttaacagGATCACCAATGGAAAGCACACAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTTGCCCTTCAGTCTGCTCTGGAAACTGATATCAGGGCCAAGCAAAGTCTCCATGAGCA---TATGCAGGTACAGGAGGCACAAAGAGCACAACGTCAGGCAGAATGgtgagattataaatgggttaggagtgaaatcctctgccaggcactgcagt Alignment from Pairagon GATCACCAGTGGAAGGCTCGGAGGCTG---CAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAG---------GCTCAGCGGCAGGCTGAACG gccttcatgaggaacatctttattagtgtcttctcttacctctttaacagGATCACCAATGGAAAGCACACAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTTGCCCTTCAGTCTGCTCTGGAAACTGATATCAGGGCCAAGCAAAGTCTCCATGAGCA---TATGCAGGTACAGGAGGCACAAAGAGCACAACGTCAGGCAGAATGgtgagattataaatgggttaggagtgaaatcctctgccaggcactgcagt Alignment from Exonerate_protein2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gccttcatgaggaacatctttattagtgtcttctcttacctctttaacagGATCACCAATGGAAAGCACACAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTTGCCCTTCAGTCTGCTCTGGAAACTGATATCAGGGCCAAGCAAAGTCTCCATGAGCATATGCAGGTACAGGAGGCACAAAGAGCACAACGTCAGGCAGAATGgtgagattataaatgggttaggagtgaaatcctctgccaggcactgcagt Alignment from Exonerate_coding2genome gccttcatgaggaacatctttattagtgtcttctcttacctctttaacaggatcaccaatggaaagcacacaagctgcaacagatgatggaggcattagctcggcttgcccttcagtctgctctggaaactgatatcagggccaagcaaagtctccatgagcatatgcaggtacaggaggcacaaagagcacaacgtcaggcagaatggtgagattataaatgggttaggagtgaaatcctctgccaggcactgcagt Alignment from GeneWise GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gccttcatgaggaacatctttattagtgtcttctcttacctctttaacagGATCACCAATGGAAAGCACACAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTTGCCCTTCAGTCTGCTCTGGAAACTGATATCAGGGCCAAGCAAAGTCTCCATGAGCATATGCAGGTACAGGAGGCACAAAGAGCACAACGTCAGGCAGAATGgtgagattataaatgggttaggagtgaaatcctctgccaggcactgcagt #### Cdc42bpg_ID1601_31 --> 2 - 0 Original Alignment gtTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaagtataggccctaacgcgccctctttccacaggtTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACAATACCCTTGATGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTG---------ACAgtaagggctaacagtggttgtcacattaggacattgagtggatcctttga Alignment from CESAR gtTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaagtataggccctaacgcgccctctttccacaggtTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACAATACCCTTGATGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTGACA---------gtaagggctaacagtggttgtcacattaggacattgagtgg Alignment from Spaln_aa2Genome GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAG tctcacttatgcctaaaaagtataggccctaacgcgccctctttccacagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACAATACCCTTGATGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTGACAGTAAGGgctaacagtggttgtcacattaggacattgagtggatcctttga Alignment from Spaln_nt2Genome GTTACACAGCACCCTAC---------CTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaagtataggccctaacgcgccctctttccacagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACAATACCCTTGATGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTGACAGT-AAG--Ggctaacagtggttgtcacattaggacattgagtggatcctt Alignment from Pairagon GTTACACAGCAC---------CCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCG tctcacttatgcctaaaaagtataggccctaacgcgccctctttccacagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACAATACCCTTGATGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTGACAgtaagggctaacagtggttgtcacattaggacattgagtggatcctttga Alignment from Exonerate_protein2genome GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCG tctcacttatgcctaaaaagtataggccctaacgcgccctctttccacagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACAATACCCTTGATGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTGACAgtaagggctaacagtggttgtcacattaggacattgagtggatcctttga Alignment from Exonerate_coding2genome GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCG tctcacttatgcctaaaaagtataggccctaacgcgccctctttccacagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACAATACCCTTGATGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTGACAgtaagggctaacagtggttgtcacattaggacattgagtggatcctttga Alignment from GeneWise GTTACACAGCACCC---------TACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG tctcacttatgcctaaaaagtataggccctaacgcgccctctttccacagGTTACACAGCACCATACTTAACTTACCTAACTGTATTCAGTGACAATACCCTTGATGTCTTTGATGTTAGGAGAGCAGAATGGGTCCAAACTGTG---------ACAgtaagggctaacagtggttgtcacattaggacattgagtggatcctttga #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCGTCCACCAGGACAAACAGACCCCtgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCGTCCACCAGGACAAACAGACCCCtgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCGTCCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCGTCCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCGTCCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCGTCCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCGTCCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT aatgcaagagttccatgtagtctgctctattcgtccgtgggtctttgcagGCCCAGGAACAGAAGAGTAGTGGTGCCTGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCAGCGGCCAGTGTCAACAGACAGTGATCGTCCACCAGGACAAACAGACCCCTgtgagtattcaggatagttctcagtgagatattcccgattatttccttta #### Cep55_ID7507_2 --> 0 - 0 Original Alignment AAAATCCAAGTTCTTGAAGCCGAGAGAGAAAAGAATGTTTATTACCTCCTGGAGAAGGACAAAGAAATACAGAGACTCAAAGACCACCTAAGGTCAAGATATAGCTCTTCT------TCATTGTTCGAGCAGCTGGAAGAGAAAACAAAGGAATGTGAGAAGAAGCAGCAGTTGCTGGAGTCCCTATCCAAAGAGACAGATGTCCTGAAAAACCAGCTGTCCGCCACGACGAAAAGACTTTCTGAACTTGAAAGCAAAGCCAGTACACTCCACCTGTCACAG cagaccaagtcttggaggaagcccacttgtatgctctctgtttcccacagAAAATCCAAATACTTGATGCTGAGAGAGAAAAGAATGTCTACTATCTTGTGGGGAAAGAAAAGGGGATTCAAAGACTCAAGGATCATCTAAGGTCA---TATAGCCTGCCCTTATTTCTATTTTTAAAG---CTGGAGGAGAGAACAAAGGAATCTGAAAAGGAGCAGCAGTTGCTTGAGTCCCTTTCCAAGGAGACAGATGTCCTGAAAAACCAACTTGCTGCCATGATGAAGAAACTGCCTGAACTTGAAAGCAAAGCCAGTACACTTCACCTATCACAGgtaagcagaatgtctgactataaaccgagagctttccatagctatcccgg Alignment from CESAR AAAATCCAAGTTCTTGAAGCCGAGAGAGAAAAGAATGTTTATTACCTCCTGGAGAAGGACAAAGAAATACAGAGACTCAAAGACCACCTAAGGTCAAGATATAGCTCTTCTTCA---TTGTTCGAGCAGCTGGAAGAGAAAACAAAGGAATGTGAGAAGAAGCAGCAGTTGCTGGAGTCCCTATCCAAAGAGACAGATGTCCTGAAAAACCAGCTGTCCGCCACGACGAAAAGACTTTCTGAACTTGAAAGCAAAGCCAGTACACTCCACCTGTCACAG cagaccaagtcttggaggaagcccacttgtatgctctctgtttcccacagAAAATCCAAATACTTGATGCTGAGAGAGAAAAGAATGTCTACTATCTTGTGGGGAAAGAAAAGGGGATTCAAAGACTCAAGGATCATCTAAGGTCA---TATAGCCTGCCCTTATTTCTATTTTTAAAGCTGGAGGAGAGAACAAAGGAATCTGAAAAGGAGCAGCAGTTGCTTGAGTCCCTTTCCAAGGAGACAGATGTCCTGAAAAACCAACTTGCTGCCATGATGAAGAAACTGCCTGAACTTGAAAGCAAAGCCAGTACACTTCACCTATCACAGgtaagcagaatgtctgactataaaccgagagctttccatagctatcccgg Alignment from Spaln_aa2Genome AAAATCCAAGTTCTTGAAGCCGAGAGAGAAAAGAATGTTTATTACCTCCTGGAGAAGGACAAAGAAATACAGAGACTCAAAGACCACCTAAGGTCAAGATATAGCTCTTCTTCATTGTTCGAGCAGCTGGAAGAGAAAACAAAGGAATGTGAGAAGAAGCAGCAGTTGCTGGAGTCCCTATCCAAAGAGACAGATGTCCTGAAAAACCAGCTGTCCGCCACGACGAAAAGACTTTCTGAACTTGAAAGCAAAGCCAGTACACTCCACCTGTCACAG cagaccaagtcttggaggaagcccacttgtatgctctctgtttcccacagAAAATCCAAATACTTGATGCTGAGAGAGAAAAGAATGTCTACTATCTTGTGGGGAAAGAAAAGGGGATTCAAAGACTCAAGGATCATCTAAGGTCATATAGCCTGCCCTTATTTCTATTTTTAAAGCTGGAGGAGAGAACAAAGGAATCTGAAAAGGAGCAGCAGTTGCTTGAGTCCCTTTCCAAGGAGACAGATGTCCTGAAAAACCAACTTGCTGCCATGATGAAGAAACTGCCTGAACTTGAAAGCAAAGCCAGTACACTTCACCTATCACAGgtaagcagaatgtctgactataaaccgagagctttccatagctatcccgg Alignment from Spaln_nt2Genome AAAATCCAAGTTCTTGAAGCCGAGAGAGAAAAGAATGTTTATTACCTCCTGGAGAAGGACAAAGAAATACAGAGACTCAAAGACCACCTAAGGTCA-AGATATAGCTCTTCTTCATTGTTCGAGCAGCTGGAAGAGAAAACAAAGGAATGTGAGAAGAAGCAGCAGTTGCTGGAGTCCCTATCCAAAGAGACAGATGTCCTGAAAAACCAGCTGTCCGCCACGACGAAAAGACTTTCTGAACTTGAAAGCAAAGCCAGTACACTCCACCTGTCACAG cagaccaagtcttggaggaagcccacttgtatgctctctgtttcccacagAAAATCCAAATACTTGATGCTGAGAGAGAAAAGAATGTCTACTATCTTGTGGGGAAAGAAAAGGGGATTCAAAGACTCAAGGATCATCTAAGGTCATATAGCCTGCCCTTATTTCTATTTTTA-AAGCTGGAGGAGAGAACAAAGGAATCTGAAAAGGAGCAGCAGTTGCTTGAGTCCCTTTCCAAGGAGACAGATGTCCTGAAAAACCAACTTGCTGCCATGATGAAGAAACTGCCTGAACTTGAAAGCAAAGCCAGTACACTTCACCTATCACAGgtaagcagaatgtctgactataaaccgagagctttccatagctatcccgg Alignment from Pairagon AAAATCCAAGTTCTTGAAGCCGAGAGAGAAAAGAATGTTTATTACCTCCTGGAGAAGGACAAAGAAATACAGAGACTCAAAGACCACCTAAGGTC---------------------------AAGATATAGCTCTTCTTCATTGTTCGAGCAGCTGGAAGAGAAAACAAAGGAATGTGAGAAGAAGCAGCAGTTGCTGGAGTCCCTATCCAAAGAGACAGATGTCCTGAAAAACCAGCTGTCCGCCACGACGAAAAGACTTTCTGAACTTGAAAGCAAAGCCAGTACACTCCACCTGTCACAG cagaccaagtcttggaggaagcccacttgtatgctctctgtttcccacagAAAATCCAAATACTTGATGCTGAGAGAGAAAAGAATGTCTACTATCTTGTGGGGAAAGAAAAGGGGATTCAAAGACTCAAGGATCATCTAAGGTCATATAGCCTGCCCTTATTTCTATTTTTAA---------------------------AGCTGGAGGAGAGAACAAAGGAATCTGAAAAGGAGCAGCAGTTGCTTGAGTCCCTTTCCAAGGAGACAGATGTCCTGAAAAACCAACTTGCTGCCATGATGAAGAAACTGCCTGAACTTGAAAGCAAAGCCAGTACACTTCACCTATCACAGgtaagcagaatgtctgactataaaccgagagctttccatagctatcccgg Alignment from Exonerate_protein2genome AAAATCCAAGTTCTTGAAGCCGAGAGAGAAAAGAATGTTTATTACCTCCTGGAGAAGGACAAAGAAATACAGAGACTCAAAGACCACCTAAGGTCAAGATATAGCTCTTCTTCATTGTTCGAGCAGCTGGAAGAGAAAACAAAGGAATGTGAGAAGAAGCAGCAGTTGCTGGAGTCCCTATCCAAAGAGACAGATGTCCTGAAAAACCAGCTGTCCGCCACGACGAAAAGACTTTCTGAACTTGAAAGCAAAGCCAGTACACTCCACCTGTCACAG cagaccaagtcttggaggaagcccacttgtatgctctctgtttcccacagAAAATCCAAATACTTGATGCTGAGAGAGAAAAGAATGTCTACTATCTTGTGGGGAAAGAAAAGGGGATTCAAAGACTCAAGGATCATCTAAGGTCATATAGCCTGCCCTTATTTCTATTTTTAAAGCTGGAGGAGAGAACAAAGGAATCTGAAAAGGAGCAGCAGTTGCTTGAGTCCCTTTCCAAGGAGACAGATGTCCTGAAAAACCAACTTGCTGCCATGATGAAGAAACTGCCTGAACTTGAAAGCAAAGCCAGTACACTTCACCTATCACAGgtaagcagaatgtctgactataaaccgagagctttccatagctatcccgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAAATCCAAGTTCTTGAAGCCGAGAGAGAAAAGAATGTTTATTACCTCCTGGAGAAGGACAAAGAAATACAGAGACTCAAAGACCACCTAAGGTCAAGATATAGCTCTTCTTCATTGTTCGAGCAGCTGGAAGAGAAAACAAAGGAATGTGAGAAGAAGCAGCAGTTGCTGGAGTCCCTATCCAAAGAGACAGATGTCCTGAAAAACCAGCTGTCCGCCACGACGAAAAGACTTTCTGAACTTGAAAGCAAAGCCAGTACACTCCACCTGTCACAG cagaccaagtcttggaggaagcccacttgtatgctctctgtttcccacagAAAATCCAAATACTTGATGCTGAGAGAGAAAAGAATGTCTACTATCTTGTGGGGAAAGAAAAGGGGATTCAAAGACTCAAGGATCATCTAAGGTCATATAGCCTGCCCTTATTTCTATTTTTAAAGCTGGAGGAGAGAACAAAGGAATCTGAAAAGGAGCAGCAGTTGCTTGAGTCCCTTTCCAAGGAGACAGATGTCCTGAAAAACCAACTTGCTGCCATGATGAAGAAACTGCCTGAACTTGAAAGCAAAGCCAGTACACTTCACCTATCACAGgtaagcagaatgtctgactataaaccgagagctttccatagctatcccgg #### Cep55_ID7508_3 --> 0 - 0 Original Alignment AGCATGCCTGCAAACTGCTTCAACTCCTCAATGAATAGTATTCATGAAAAGGAGATGCAGCTGAAAGAT aatgtacaattgagtttatgttgaacagaatttcttcttctctgaaacagAGCATGCCCCTAAACTGTTTTAATACTTCAATGAACAGCATCCATGAGAAAGAGATGCAGCTAAAAGACgtaggaggcatcccattgttttgctactgatgatggttgtaaagcaatat Alignment from CESAR AGCATGCCTGCAAACTGCTTCAACTCCTCAATGAATAGTATTCATGAAAAGGAGATGCAGCTGAAAGAT aatgtacaattgagtttatgttgaacagaatttcttcttctctgaaacagAGCATGCCCCTAAACTGTTTTAATACTTCAATGAACAGCATCCATGAGAAAGAGATGCAGCTAAAAGACgtaggaggcatcccattgttttgctactgatgatggttgtaaagcaatat Alignment from Spaln_aa2Genome AGCATGCCTGCAAACTGCTTCAACTCCTCAATGAATAGTATTCATGAAAAGGAGATGCAGCTGAAAGAT aatgtacaattgagtttatgttgaacagaatttcttcttctctgaaacagAGCATGCCCCTAAACTGTTTTAATACTTCAATGAACAGCATCCATGAGAAAGAGATGCAGCTAAAAGACgtaggaggcatcccattgttttgctactgatgatggttgtaaagcaatat Alignment from Spaln_nt2Genome AGCATGCCTGCAAACTGCTTCAACTCCTCAATGAATAGTATTCATGAAAAGGAGATGCAGCTGAAAGAT aatgtacaattgagtttatgttgaacagaatttcttcttctctgaaacagAGCATGCCCCTAAACTGTTTTAATACTTCAATGAACAGCATCCATGAGAAAGAGATGCAGCTAAAAGACgtaggaggcatcccattgttttgctactgatgatggttgtaaagcaatat Alignment from Pairagon AGCATGCCTGCAAACTGCTTCAACTCCTCAATGAATAGTATTCATGAAAAGGAGATGCAGCTGAAAGAT aatgtacaattgagtttatgttgaacagaatttcttcttctctgaaacagAGCATGCCCCTAAACTGTTTTAATACTTCAATGAACAGCATCCATGAGAAAGAGATGCAGCTAAAAGACgtaggaggcatcccattgttttgctactgatgatggttgtaaagcaatat Alignment from Exonerate_protein2genome AGCATGCCTGCAAACTGCTTCAACTCCTCAATGAATAGTATTCATGAAAAGGAGATGCAGCTGAAAGAT aatgtacaattgagtttatgttgaacagaatttcttcttctctgaaacagAGCATGCCCCTAAACTGTTTTAATACTTCAATGAACAGCATCCATGAGAAAGAGATGCAGCTAAAAGACgtaggaggcatcccattgttttgctactgatgatggttgtaaagcaatat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCATGCCTGCAAACTGCTTCAACTCCTCAATGAATAGTATTCATGAAAAGGAGATGCAGCTGAAAGAT aatgtacaattgagtttatgttgaacagaatttcttcttctctgaaacagAGCATGCCCCTAAACTGTTTTAATACTTCAATGAACAGCATCCATGAGAAAGAGATGCAGCTAAAAGACgtaggaggcatcccattgttttgctactgatgatggttgtaaagcaatat #### Cep55_ID7510_5 --> 2 - 0 Original Alignment gtTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG gatatccattgcacatatggaatgggaatcaaaattctttatgttgtcagggCATCTACAAGTGGAGAAACAGAAATATGAACACCTCTTGGAGAATGCAAAGAAAGAGCTTGAAGCAGAGCGACAGGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAATATGCTGAAGTCCGAAAAGAGGTAGAGGACTTAAATCAGTTGTTGAGTTCTCAGCAAAGAGAAGACATTCAACACCTAGAGTTAGACAAGCAGAAGACAGAGACGATTCAGCAGCTAAGAGAAGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGGGGAGATCAGAGGAGCTCCTCTCTCAGgtaggcaggcctgagcagcaagtatgcctcatatgagtgagtcagcattg Alignment from CESAR gtTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG gatatccattgcacatatggaatgggaatcaaaattctttatgttgtcagggCATCTACAAGTGGAGAAACAGAAATATGAACACCTCTTGGAGAATGCAAAGAAAGAGCTTGAAGCAGAGCGACAGGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAATATGCTGAAGTCCGAAAAGAGGTAGAGGACTTAAATCAGTTGTTGAGTTCTCAGCAAAGAGAAGACATTCAACACCTAGAGTTAGACAAGCAGAAGACAGAGACGATTCAGCAGCTAAGAGAAGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGGGGAGATCAGAGGAGCTCCTCTCTCAGgtaggcaggcctgagcagcaagtatgcctcatatgagtgagtcagcattg Alignment from Spaln_aa2Genome GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG gatatccattgcacatatggaatgggaatcaaaattctttatgttgtcagGGCATCTACAAGTGGAGAAACAGAAATATGAACACCTCTTGGAGAATGCAAAGAAAGAGCTTGAAGCAGAGCGACAGGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAATATGCTGAAGTCCGAAAAGAGGTAGAGGACTTAAATCAGTTGTTGAGTTCTCAGCAAAGAGAAGACATTCAACACCTAGAGTTAGACAAGCAGAAGACAGAGACGATTCAGCAGCTAAGAGAAGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGGGGAGATCAGAGGAGCTCCTCTCTCAGgtaggcaggcctgagcagcaagtatgcctcatatgagtgagtcagcattg Alignment from Spaln_nt2Genome GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG gatatccattgcacatatggaatgggaatcaaaattctttatgttgtcagGGCATCTACAAGTGGAGAAACAGAAATATGAACACCTCTTGGAGAATGCAAAGAAAGAGCTTGAAGCAGAGCGACAGGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAATATGCTGAAGTCCGAAAAGAGGTAGAGGACTTAAATCAGTTGTTGAGTTCTCAGCAAAGAGAAGACATTCAACACCTAGAGTTAGACAAGCAGAAGACAGAGACGATTCAGCAGCTAAGAGAAGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGGGGAGATCAGAGGAGCTCCTCTCTCAGgtaggcaggcctgagcagcaagtatgcctcatatgagtgagtcagcattg Alignment from Pairagon GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG gatatccattgcacatatggaatgggaatcaaaattctttatgttgtcagGGCATCTACAAGTGGAGAAACAGAAATATGAACACCTCTTGGAGAATGCAAAGAAAGAGCTTGAAGCAGAGCGACAGGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAATATGCTGAAGTCCGAAAAGAGGTAGAGGACTTAAATCAGTTGTTGAGTTCTCAGCAAAGAGAAGACATTCAACACCTAGAGTTAGACAAGCAGAAGACAGAGACGATTCAGCAGCTAAGAGAAGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGGGGAGATCAGAGGAGCTCCTCTCTCAGgtaggcaggcctgagcagcaagtatgcctcatatgagtgagtcagcattg Alignment from Exonerate_protein2genome GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG gatatccattgcacatatggaatgggaatcaaaattctttatgttgtcagGGCATCTACAAGTGGAGAAACAGAAATATGAACACCTCTTGGAGAATGCAAAGAAAGAGCTTGAAGCAGAGCGACAGGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAATATGCTGAAGTCCGAAAAGAGGTAGAGGACTTAAATCAGTTGTTGAGTTCTCAGCAAAGAGAAGACATTCAACACCTAGAGTTAGACAAGCAGAAGACAGAGACGATTCAGCAGCTAAGAGAAGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGGGGAGATCAGAGGAGCTCCTCTCTCAGgtaggcaggcctgagcagcaagtatgcctcatatgagtgagtcagcattg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG gatatccattgcacatatggaatgggaatcaaaattctttatgttgtcagGGCATCTACAAGTGGAGAAACAGAAATATGAACACCTCTTGGAGAATGCAAAGAAAGAGCTTGAAGCAGAGCGACAGGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAATATGCTGAAGTCCGAAAAGAGGTAGAGGACTTAAATCAGTTGTTGAGTTCTCAGCAAAGAGAAGACATTCAACACCTAGAGTTAGACAAGCAGAAGACAGAGACGATTCAGCAGCTAAGAGAAGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGGGGAGATCAGAGGAGCTCCTCTCTCAGgtaggcaggcctgagcagcaagtatgcctcatatgagtgagtcagcattg #### Cep55_ID7512_7 --> 0 - 0 Original Alignment ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aaggctgtatcacaaccaggaatgcaatttactccttgttctttctccagATGCAGGCCTGCACTCTAGACATCGAAAATGAGAAACTTGACCACCAAAATATGCAGCGCCAACTCTACGTCATCCTTAAAGAACTCCGAAGAGCAAAAAGTCAGATAATACAGTTGGAATCCCTCgtgagttcaggagggtatgggaggtgggggtgacactccgcaagttgggc Alignment from CESAR ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aaggctgtatcacaaccaggaatgcaatttactccttgttctttctccagATGCAGGCCTGCACTCTAGACATCGAAAATGAGAAACTTGACCACCAAAATATGCAGCGCCAACTCTACGTCATCCTTAAAGAACTCCGAAGAGCAAAAAGTCAGATAATACAGTTGGAATCCCTCgtgagttcaggagggtatgggaggtgggggtgacactccgcaagttgggc Alignment from Spaln_aa2Genome ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aaggctgtatcacaaccaggaatgcaatttactccttgttctttctccagATGCAGGCCTGCACTCTAGACATCGAAAATGAGAAACTTGACCACCAAAATATGCAGCGCCAACTCTACGTCATCCTTAAAGAACTCCGAAGAGCAAAAAGTCAGATAATACAGTTGGAATCCCTCgtgagttcaggagggtatgggaggtgggggtgacactccgcaagttgggc Alignment from Spaln_nt2Genome ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aaggctgtatcacaaccaggaatgcaatttactccttgttctttctccagATGCAGGCCTGCACTCTAGACATCGAAAATGAGAAACTTGACCACCAAAATATGCAGCGCCAACTCTACGTCATCCTTAAAGAACTCCGAAGAGCAAAAAGTCAGATAATACAGTTGGAATCCCTCgtgagttcaggagggtatgggaggtgggggtgacactccgcaagttgggc Alignment from Pairagon ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aaggctgtatcacaaccaggaatgcaatttactccttgttctttctccagATGCAGGCCTGCACTCTAGACATCGAAAATGAGAAACTTGACCACCAAAATATGCAGCGCCAACTCTACGTCATCCTTAAAGAACTCCGAAGAGCAAAAAGTCAGATAATACAGTTGGAATCCCTCgtgagttcaggagggtatgggaggtgggggtgacactccgcaagttgggc Alignment from Exonerate_protein2genome ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aaggctgtatcacaaccaggaatgcaatttactccttgttctttctccagATGCAGGCCTGCACTCTAGACATCGAAAATGAGAAACTTGACCACCAAAATATGCAGCGCCAACTCTACGTCATCCTTAAAGAACTCCGAAGAGCAAAAAGTCAGATAATACAGTTGGAATCCCTCgtgagttcaggagggtatgggaggtgggggtgacactccgcaagttgggc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aaggctgtatcacaaccaggaatgcaatttactccttgttctttctccagATGCAGGCCTGCACTCTAGACATCGAAAATGAGAAACTTGACCACCAAAATATGCAGCGCCAACTCTACGTCATCCTTAAAGAACTCCGAAGAGCAAAAAGTCAGATAATACAGTTGGAATCCCTCgtgagttcaggagggtatgggaggtgggggtgacactccgcaagttgggc #### Cep78_ID3972_14 --> 1 - 0 Original Alignment gCTTGGACAGCTTGCCACTATGGCTGGCATAGATCAGTCAGATTTCCACCTGTTAGGTCGTCCGCAGATGAATTCCACGGTTAATACACCTATACAAGAACAGAAGGCACTTGAAGATGAAACTCTGCATCCGAAACAGACTGCCACCGGACAAATGCAGGATATCCGA atacatcctccccccagtgtgtaccttctactctgcctggtttgttttagaTTTGGACAGATAGCTAGTATGACAGGAATAGACCAGTCAGATTCACACCTATTAGGCCGCCCTCAGATGAATTCCCCTGTTAACCCACCCATACAAAAACAAAAAGCACTCGAAGTTGAAACATTGCATCCAAAGCAAACAGCCACTGGACAAATCCAAGATATTGAAgtgagtggtctcccaattctttatgcaccccataagtaaggcaagccttg Alignment from CESAR gCTTGGACAGCTTGCCACTATGGCTGGCATAGATCAGTCAGATTTCCACCTGTTAGGTCGTCCGCAGATGAATTCCACGGTTAATACACCTATACAAGAACAGAAGGCACTTGAAGATGAAACTCTGCATCCGAAACAGACTGCCACCGGACAAATGCAGGATATCCGA atacatcctccccccagtgtgtaccttctactctgcctggtttgttttagaTTTGGACAGATAGCTAGTATGACAGGAATAGACCAGTCAGATTCACACCTATTAGGCCGCCCTCAGATGAATTCCCCTGTTAACCCACCCATACAAAAACAAAAAGCACTCGAAGTTGAAACATTGCATCCAAAGCAAACAGCCACTGGACAAATCCAAGATATTGAAgtgagtggtctcccaattctttatgcaccccataagtaaggcaagccttg Alignment from Spaln_aa2Genome GCTTGGACAGCTTGCCACTATGGCTGGCATAGATCAGTCAGATTTCCACCTGTTAGGTCGTCCGCAGATGAATTCCACGGTTAATACACCTATACAAGAACAGAAGGCACTTGAAGATGAAACTCTGCATCCGAAACAGACTGCCACCGGACAAATGCAGGATATCCGA atacatcctccccccagtgtgtaccttctactctgcctggtttgttttagATTTGGACAGATAGCTAGTATGACAGGAATAGACCAGTCAGATTCACACCTATTAGGCCGCCCTCAGATGAATTCCCCTGTTAACCCACCCATACAAAAACAAAAAGCACTCGAAGTTGAAACATTGCATCCAAAGCAAACAGCCACTGGACAAATCCAAGATATTGAAgtgagtggtctcccaattctttatgcaccccataagtaaggcaagccttg Alignment from Spaln_nt2Genome GCTTGGACAGCTTGCCACTATGGCTGGCATAGATCAGTCAGATTTCCACCTGTTAGGTCGTCCGCAGATGAATTCCACGGTTAATACACCTATACAAGAACAGAAGGCACTTGAAGATGAAACTCTGCATCCGAAACAGACTGCCACCGGACAAATGCAGGATATCCGA atacatcctccccccagtgtgtaccttctactctgcctggtttgttttagATTTGGACAGATAGCTAGTATGACAGGAATAGACCAGTCAGATTCACACCTATTAGGCCGCCCTCAGATGAATTCCCCTGTTAACCCACCCATACAAAAACAAAAAGCACTCGAAGTTGAAACATTGCATCCAAAGCAAACAGCCACTGGACAAATCCAAGATATTGAAgtgagtggtctcccaattctttatgcaccccataagtaaggcaagccttg Alignment from Pairagon GCTTGGACAGCTTGCCACTATGGCTGGCATAGATCAGTCAGATTTCCACCTGTTAGGTCGTCCGCAGATGAATTCCACGGTTAATACACCTATACAAGAACAGAAGGCACTTGAAGATGAAACTCTGCATCCGAAACAGACTGCCACCGGACAAATGCAGGATATCCGA atacatcctccccccagtgtgtaccttctactctgcctggtttgttttagATTTGGACAGATAGCTAGTATGACAGGAATAGACCAGTCAGATTCACACCTATTAGGCCGCCCTCAGATGAATTCCCCTGTTAACCCACCCATACAAAAACAAAAAGCACTCGAAGTTGAAACATTGCATCCAAAGCAAACAGCCACTGGACAAATCCAAGATATTGAAgtgagtggtctcccaattctttatgcaccccataagtaaggcaagccttg Alignment from Exonerate_protein2genome GCTTGGACAGCTTGCCACTATGGCTGGCATAGATCAGTCAGATTTCCACCTGTTAGGTCGTCCGCAGATGAATTCCACGGTTAATACACCTATACAAGAACAGAAGGCACTTGAAGATGAAACTCTGCATCCGAAACAGACTGCCACCGGACAAATGCAGGATATCCGA atacatcctccccccagtgtgtaccttctactctgcctggtttgttttagATTTGGACAGATAGCTAGTATGACAGGAATAGACCAGTCAGATTCACACCTATTAGGCCGCCCTCAGATGAATTCCCCTGTTAACCCACCCATACAAAAACAAAAAGCACTCGAAGTTGAAACATTGCATCCAAAGCAAACAGCCACTGGACAAATCCAAGATATTGAAgtgagtggtctcccaattctttatgcaccccataagtaaggcaagccttg Alignment from Exonerate_coding2genome GCTTGGACAGCTTGCCACTATGGCTGGCATAGATCAGTCAGATTTCCACCTGTTAGGTCGTCCGCAGATGAATTCCACGGTTAATACACCTATACAAGAACAGAAGGCACTTGAAGATGAAACTCTGCATCCGAAACAGACTGCCACCGGACAAATGCAGGATATCCGA atacatcctccccccagtgtgtaccttctactctgcctggtttgttttagATTTGGACAGATAGCTAGTATGACAGGAATAGACCAGTCAGATTCACACCTATTAGGCCGCCCTCAGATGAATTCCCCTGTTAACCCACCCATACAAAAACAAAAAGCACTCGAAGTTGAAACATTGCATCCAAAGCAAACAGCCACTGGACAAATCCAAGATATTGAAgtgagtggtctcccaattctttatgcaccccataagtaaggcaagccttg Alignment from GeneWise GCTTGGACAGCTTGCCACTATGGCTGGCATAGATCAGTCAGATTTCCACCTGTTAGGTCGTCCGCAGATGAATTCCACGGTTAATACACCTATACAAGAACAGAAGGCACTTGAAGATGAAACTCTGCATCCGAAACAGACTGCCACCGGACAAATGCAGGATATCCGA atacatcctccccccagtgtgtaccttctactctgcctggtttgttttagATTTGGACAGATAGCTAGTATGACAGGAATAGACCAGTCAGATTCACACCTATTAGGCCGCCCTCAGATGAATTCCCCTGTTAACCCACCCATACAAAAACAAAAAGCACTCGAAGTTGAAACATTGCATCCAAAGCAAACAGCCACTGGACAAATCCAAGATATTGAAgtgagtggtctcccaattctttatgcaccccataagtaaggcaagccttg #### Cep78_ID3973_13 --> 0 - 2 Original Alignment CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgg tctccacactctctcttaatgcatgtcctatgcttctttctatatttcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCTTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGATGCTgggtgcggccacagggtctacagtattgctccttctccaataaaagacctgg Alignment from CESAR CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgg tctccacactctctcttaatgcatgtcctatgcttctttctatatttcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCTTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGATGCTgggtgcggccacagggtctacagtattgctccttctccaataaaagacctgg Alignment from Spaln_aa2Genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tctccacactctctcttaatgcatgtcctatgcttctttctatatttcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCTTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGATGCTGGgtgcggccacagggtctacagtattgctccttctccaataaaagacctgg Alignment from Spaln_nt2Genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tctccacactctctcttaatgcatgtcctatgcttctttctatatttcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCTTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGATGCTGGgtgcggccacagggtctacagtattgctccttctccaataaaagacctgg Alignment from Pairagon CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tctccacactctctcttaatgcatgtcctatgcttctttctatatttcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCTTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGATGCTGGgtgcggccacagggtctacagtattgctccttctccaataaaagacctgg Alignment from Exonerate_protein2genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tctccacactctctcttaatgcatgtcctatgcttctttctatatttcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCTTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGATGCTGGgtgcggccacagggtctacagtattgctccttctccaataaaagacctgg Alignment from Exonerate_coding2genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tctccacactctctcttaatgcatgtcctatgcttctttctatatttcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCTTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGATGCTGGgtgcggccacagggtctacagtattgctccttctccaataaaagacctgg Alignment from GeneWise CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tctccacactctctcttaatgcatgtcctatgcttctttctatatttcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCTTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGATGCTGGgtgcggccacagggtctacagtattgctccttctccaataaaagacctgg #### Cep78_ID3980_6 --> 2 - 1 Original Alignment caCTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTg atcaggtactctgctaaagaggcgcatgctctgtgtgttacccaccacagcaCTTGATTTGCAACAGTGTGACCTGACTAGTGAAGGGGCCAAGCTATTACTGGAAGCTCTTGAAACAAACAGAACCCTGGTTGTTCTGGAGGTAAGGAAGAACCCATTAGTTggtaaggtcttcacttggggtgggtcagtcaatgagacaggtggtaatgga Alignment from CESAR caCTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTg atcaggtactctgctaaagaggcgcatgctctgtgtgttacccaccacagcaCTTGATTTGCAACAGTGTGACCTGACTAGTGAAGGGGCCAAGCTATTACTGGAAGCTCTTGAAACAAACAGAACCCTGGTTGTTCTGGAGGTAAGGAAGAACCCATTAGTTggtaaggtcttcacttggggtgggtcagtcaatgagacaggtggtaatgga Alignment from Spaln_aa2Genome CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG atcaggtactctgctaaagaggcgcatgctctgtgtgttacccaccacagCACTTGATTTGCAACAGTGTGACCTGACTAGTGAAGGGGCCAAGCTATTACTGGAAGCTCTTGAAACAAACAGAACCCTGGTTGTTCTGGAGGTAAGGAAGAACCCATTAGTTGgtaaggtcttcacttggggtgggtcagtcaatgagacaggtggtaatgga Alignment from Spaln_nt2Genome CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG atcaggtactctgctaaagaggcgcatgctctgtgtgttacccaccacagCACTTGATTTGCAACAGTGTGACCTGACTAGTGAAGGGGCCAAGCTATTACTGGAAGCTCTTGAAACAAACAGAACCCTGGTTGTTCTGGAGGTAAGGAAGAACCCATTAGTTGgtaaggtcttcacttggggtgggtcagtcaatgagacaggtggtaatgga Alignment from Pairagon CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG atcaggtactctgctaaagaggcgcatgctctgtgtgttacccaccacagCACTTGATTTGCAACAGTGTGACCTGACTAGTGAAGGGGCCAAGCTATTACTGGAAGCTCTTGAAACAAACAGAACCCTGGTTGTTCTGGAGGTAAGGAAGAACCCATTAGTTGgtaaggtcttcacttggggtgggtcagtcaatgagacaggtggtaatgga Alignment from Exonerate_protein2genome CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG atcaggtactctgctaaagaggcgcatgctctgtgtgttacccaccacagCACTTGATTTGCAACAGTGTGACCTGACTAGTGAAGGGGCCAAGCTATTACTGGAAGCTCTTGAAACAAACAGAACCCTGGTTGTTCTGGAGGTAAGGAAGAACCCATTAGTTGgtaaggtcttcacttggggtgggtcagtcaatgagacaggtggtaatgga Alignment from Exonerate_coding2genome atcaggtactctgctaaagaggcgcatgctctgtgtgttacccaccacagcacttgatttgcaacagtgtgacctgactagtgaaggggccaagctattactggaagctcttgaaacaaacagaaccctggttgttctggaggtaaggaagaacccattagttggtaaggtcttcacttggggtgggtcagtcaatgagacaggtggtaatgga Alignment from GeneWise CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG atcaggtactctgctaaagaggcgcatgctctgtgtgttacccaccacagCACTTGATTTGCAACAGTGTGACCTGACTAGTGAAGGGGCCAAGCTATTACTGGAAGCTCTTGAAACAAACAGAACCCTGGTTGTTCTGGAGGTAAGGAAGAACCCATTAGTTGgtaaggtcttcacttggggtgggtcagtcaatgagacaggtggtaatgga #### Cep78_ID3982_4 --> 2 - 0 Original Alignment ttATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tccattgtatgtaatgccattgtcagcttgtttgttttgtttttttacagttATCTGTCAAGGCATAAAAAATTCTGTTGCCCTTAAAACTGTTAATTTTACTGGGTGTAATCGAACATGGCAGGGAGCCTGTCAGATGGCCAAGATCATAAAAgtagggaatgttcaaattcagtattactgcagttcatatactgacaagag Alignment from CESAR ttATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tccattgtatgtaatgccattgtcagcttgtttgttttgtttttttacagttATCTGTCAAGGCATAAAAAATTCTGTTGCCCTTAAAACTGTTAATTTTACTGGGTGTAATCGAACATGGCAGGGAGCCTGTCAGATGGCCAAGATCATAAAAgtagggaatgttcaaattcagtattactgcagttcatatactgacaagag Alignment from Spaln_aa2Genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tccattgtatgtaatgccattgtcagcttgtttgttttgtttttttacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCCCTTAAAACTGTTAATTTTACTGGGTGTAATCGAACATGGCAGGGAGCCTGTCAGATGGCCAAGATCATAAAAgtagggaatgttcaaattcagtattactgcagttcatatactgacaagag Alignment from Spaln_nt2Genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tccattgtatgtaatgccattgtcagcttgtttgttttgtttttttacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCCCTTAAAACTGTTAATTTTACTGGGTGTAATCGAACATGGCAGGGAGCCTGTCAGATGGCCAAGATCATAAAAgtagggaatgttcaaattcagtattactgcagttcatatactgacaagag Alignment from Pairagon TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tccattgtatgtaatgccattgtcagcttgtttgttttgtttttttacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCCCTTAAAACTGTTAATTTTACTGGGTGTAATCGAACATGGCAGGGAGCCTGTCAGATGGCCAAGATCATAAAAgtagggaatgttcaaattcagtattactgcagttcatatactgacaagag Alignment from Exonerate_protein2genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tccattgtatgtaatgccattgtcagcttgtttgttttgtttttttacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCCCTTAAAACTGTTAATTTTACTGGGTGTAATCGAACATGGCAGGGAGCCTGTCAGATGGCCAAGATCATAAAAgtagggaatgttcaaattcagtattactgcagttcatatactgacaagag Alignment from Exonerate_coding2genome tccattgtatgtaatgccattgtcagcttgtttgttttgtttttttacagttatctgtcaaggcataaaaaattctgttgcccttaaaactgttaattttactgggtgtaatcgaacatggcagggagcctgtcagatggccaagatcataaaagtagggaatgttcaaattcagtattactgcagttcatatactgacaagag Alignment from GeneWise TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG tccattgtatgtaatgccattgtcagcttgtttgttttgtttttttacagTTATCTGTCAAGGCATAAAAAATTCTGTTGCCCTTAAAACTGTTAATTTTACTGGGTGTAATCGAACATGGCAGGGAGCCTGTCAGATGGCCAAGATCATAAAAgtagggaatgttcaaattcagtattactgcagttcatatactgacaagag #### Cfl1_ID1060_2 --> 0 - 2 Original Alignment GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCtg ttcagcaccattaatctaacaacaagacttttcttttttgttcactgtagGCCTCTGGAGTAGCCATCTCGGATGGTGTGATCAAGGTCTTCAATGAGATGAAGGTATGCAAATTCGCAACACCAGAGGAAGTCAAGAAACGCAACAGGGTAGTACTATTTTGCCTGAGTGAGGACAAGAAAAATATCCCCTTGGAGGAGGGTAAAGACATTTTGGTAGGAGATCTAAGGCAGACTGTAGATGACCCTTATACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTGTGCACTCTATGATGCTACATATGAGTCCAAGGAGAGTAAGAAGGAGGACTTGGTCTTCATCTTTtggtaagtatcagagctcacaagctagagcaaaagagcctatcagtggacag Alignment from CESAR GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCtg ttcagcaccattaatctaacaacaagacttttcttttttgttcactgtagGCCTCTGGAGTAGCCATCTCGGATGGTGTGATCAAGGTCTTCAATGAGATGAAGGTATGCAAATTCGCAACACCAGAGGAAGTCAAGAAACGCAACAGGGTAGTACTATTTTGCCTGAGTGAGGACAAGAAAAATATCCCCTTGGAGGAGGGTAAAGACATTTTGGTAGGAGATCTAAGGCAGACTGTAGATGACCCTTATACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTGTGCACTCTATGATGCTACATATGAGTCCAAGGAGAGTAAGAAGGAGGACTTGGTCTTCATCTTTtggtaagtatcagagctcacaagctagagcaaaagagcctatcagtggacag Alignment from Spaln_aa2Genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ttcagcaccattaatctaacaacaagacttttcttttttgttcactgtagGCCTCTGGAGTAGCCATCTCGGATGGTGTGATCAAGGTCTTCAATGAGATGAAGGTATGCAAATTCGCAACACCAGAGGAAGTCAAGAAACGCAACAGGGTAGTACTATTTTGCCTGAGTGAGGACAAGAAAAATATCCCCTTGGAGGAGGGTAAAGACATTTTGGTAGGAGATCTAAGGCAGACTGTAGATGACCCTTATACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTGTGCACTCTATGATGCTACATATGAGTCCAAGGAGAGTAAGAAGGAGGACTTGGTCTTCATCTTTTGgtaagtatcagagctcacaagctagagcaaaagagcctatcagtggacag Alignment from Spaln_nt2Genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ttcagcaccattaatctaacaacaagacttttcttttttgttcactgtagGCCTCTGGAGTAGCCATCTCGGATGGTGTGATCAAGGTCTTCAATGAGATGAAGGTATGCAAATTCGCAACACCAGAGGAAGTCAAGAAACGCAACAGGGTAGTACTATTTTGCCTGAGTGAGGACAAGAAAAATATCCCCTTGGAGGAGGGTAAAGACATTTTGGTAGGAGATCTAAGGCAGACTGTAGATGACCCTTATACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTGTGCACTCTATGATGCTACATATGAGTCCAAGGAGAGTAAGAAGGAGGACTTGGTCTTCATCTTTTGgtaagtatcagagctcacaagctagagcaaaagagcctatcagtggacag Alignment from Pairagon ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ttcagcaccattaatctaacaacaagacttttcttttttgttcactgTAGGCCTCTGGAGTAGCCATCTCGGATGGTGTGATCAAGGTCTTCAATGAGATGAAGGTATGCAAATTCGCAACACCAGAGGAAGTCAAGAAACGCAACAGGGTAGTACTATTTTGCCTGAGTGAGGACAAGAAAAATATCCCCTTGGAGGAGGGTAAAGACATTTTGGTAGGAGATCTAAGGCAGACTGTAGATGACCCTTATACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTGTGCACTCTATGATGCTACATATGAGTCCAAGGAGAGTAAGAAGGAGGACTTGGTCTTCATCTTTTGgtaagtatcagagctcacaagctagagcaaaagagcctatcagtggacag Alignment from Exonerate_protein2genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ttcagcaccattaatctaacaacaagacttttcttttttgttcactgtagGCCTCTGGAGTAGCCATCTCGGATGGTGTGATCAAGGTCTTCAATGAGATGAAGGTATGCAAATTCGCAACACCAGAGGAAGTCAAGAAACGCAACAGGGTAGTACTATTTTGCCTGAGTGAGGACAAGAAAAATATCCCCTTGGAGGAGGGTAAAGACATTTTGGTAGGAGATCTAAGGCAGACTGTAGATGACCCTTATACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTGTGCACTCTATGATGCTACATATGAGTCCAAGGAGAGTAAGAAGGAGGACTTGGTCTTCATCTTTTGgtaagtatcagagctcacaagctagagcaaaagagcctatcagtggacag Alignment from Exonerate_coding2genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ttcagcaccattaatctaacaacaagacttttcttttttgttcactgtagGCCTCTGGAGTAGCCATCTCGGATGGTGTGATCAAGGTCTTCAATGAGATGAAGGTATGCAAATTCGCAACACCAGAGGAAGTCAAGAAACGCAACAGGGTAGTACTATTTTGCCTGAGTGAGGACAAGAAAAATATCCCCTTGGAGGAGGGTAAAGACATTTTGGTAGGAGATCTAAGGCAGACTGTAGATGACCCTTATACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTGTGCACTCTATGATGCTACATATGAGTCCAAGGAGAGTAAGAAGGAGGACTTGGTCTTCATCTTTTGgtaagtatcagagctcacaagctagagcaaaagagcctatcagtggacag Alignment from GeneWise ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ttcagcaccattaatctaacaacaagacttttcttttttgttcactgtag---GCCTCTGGAGTAGCCATCTCGGATGGTGTGATCAAGGTCTTCAATGAGATGAAGGTATGCAAATTCGCAACACCAGAGGAAGTCAAGAAACGCAACAGGGTAGTACTATTTTGCCTGAGTGAGGACAAGAAAAATATCCCCTTGGAGGAGGGTAAAGACATTTTGGTAGGAGATCTAAGGCAGACTGTAGATGACCCTTATACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTGTGCACTCTATGATGCTACATATGAGTCCAAGGAGAGTAAGAAGGAGGACTTGGTCTTCATCTTTTGgtaagtatcagagctcacaagctagagcaaaagagcctatcagtggacag #### Chuk_ID8911_17 --> 2 - 2 Original Alignment atCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGT---CACCTGag ccccacacaataaaggggggtttaagtcattcatccgtgtttcccgacagatCACTTATACTGTGATAGCACGGAAATGGTAAAGTTAATTGTCCATACTGTTCAGAGCCATGACCATGTTCTCAAGGAACTGTTTGAACATCACCTGaggtagggatgcagcttcaatttgctactaataatatggtcatatttgattc Alignment from CESAR atCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGT---CACCTGag ccccacacaataaaggggggtttaagtcattcatccgtgtttcccgacagatCACTTATACTGTGATAGCACGGAAATGGTAAAGTTAATTGTCCATACTGTTCAGAGCCATGACCATGTTCTCAAGGAACTGTTTGAACATCACCTGaggtagggatgcagcttcaatttgctactaataatatggtcatatttgattc Alignment from Spaln_aa2Genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGT---CACCTGAG ccccacacaataaaggggggtttaagtcattcatccgtgtttcccgacagATCACTTATACTGTGATAGCACGGAAATGGTAAAGTTAATTGTCCATACTGTTCAGAGCCATGACCATGTTCTCAAGGAACTGTTTGAACATCACCTGAGgtagggatgcagcttcaatttgctactaataatatggtcatatttgattc Alignment from Spaln_nt2Genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGG---TCACCTGAG ccccacacaataaaggggggtttaagtcattcatccgtgtttcccgacagATCACTTATACTGTGATAGCACGGAAATGGTAAAGTTAATTGTCCATACTGTTCAGAGCCATGACCATGTTCTCAAGGAACTGTTTGAACATCACCTGAGgtagggatgcagcttcaatttgctactaataatatggtcatatttgattc Alignment from Pairagon ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTG---GTCACCTGAG ccccacacaataaaggggggtttaagtcattcatccgtgtttcccgacagATCACTTATACTGTGATAGCACGGAAATGGTAAAGTTAATTGTCCATACTGTTCAGAGCCATGACCATGTTCTCAAGGAACTGTTTGAACATCACCTGAGgtagggatgcagcttcaatttgctactaataatatggtcatatttgattc Alignment from Exonerate_protein2genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTT---GGTCACCTGAG ccccacacaataaaggggggtttaagtcattcatccgtgtttcccgacagATCACTTATACTGTGATAGCACGGAAATGGTAAAGTTAATTGTCCATACTGTTCAGAGCCATGACCATGTTCTCAAGGAACTGTTTGAACATCACCTGAGgtagggatgcagcttcaatttgctactaataatatggtcatatttgattc Alignment from Exonerate_coding2genome ccccacacaataaaggggggtttaagtcattcatccgtgtttcccgacagatcacttatactgtgatagcacggaaatggtaaagttaattgtccatactgttcagagccatgaccatgttctcaaggaactgtttgaacatcacctgaggtagggatgcagcttcaatttgctactaataatatggtcatatttgattc Alignment from GeneWise ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTT---GGTCACCTGAG ccccacacaataaaggggggtttaagtcattcatccgtgtttcccgacagATCACTTATACTGTGATAGCACGGAAATGGTAAAGTTAATTGTCCATACTGTTCAGAGCCATGACCATGTTCTCAAGGAACTGTTTGAACATCACCTGAGgtagggatgcagcttcaatttgctactaataatatggtcatatttgattc #### Chuk_ID8914_14 --> 2 - 0 Original Alignment ctTCAGAAAAAATGTTAAAAGCATGGAAAGAAATGGAAGAAAAGGCCATTCACTATTCTGAG tattcaacatacagccaacatgatatattggttgtactctttgttttaagctTCGGAGATTATGCTAAATGCTTGGAAGGAAATGGAAGAAAAGGCCATCCATTATTCTGAGgtaagctacccccaagcacatgaatgatatagacgcattggttcaactaa Alignment from CESAR ctTCAGAAAAAATGTTAAAAGCATGGAAAGAAATGGAAGAAAAGGCCATTCACTATTCTGAG tattcaacatacagccaacatgatatattggttgtactctttgttttaagctTCGGAGATTATGCTAAATGCTTGGAAGGAAATGGAAGAAAAGGCCATCCATTATTCTGAGgtaagctacccccaagcacatgaatgatatagacgcattggttcaactaa Alignment from Spaln_aa2Genome CTTCAGAAAAAATGTTAAAAGCATGGAAAGAAATGGAAGAAAAGGCCATTCACTATTCTGAG tattcaacatacagccaacatgatatattggttgtactctttgttttaagCTTCGGAGATTATGCTAAATGCTTGGAAGGAAATGGAAGAAAAGGCCATCCATTATTCTGAGgtaagctacccccaagcacatgaatgatatagacgcattggttcaactaa Alignment from Spaln_nt2Genome CTTCAGAAAAAATGTTAAAAGCATGGAAAGAAATGGAAGAAAAGGCCATTCACTATTCTGAG tattcaacatacagccaacatgatatattggttgtactctttgttttaagCTTCGGAGATTATGCTAAATGCTTGGAAGGAAATGGAAGAAAAGGCCATCCATTATTCTGAGgtaagctacccccaagcacatgaatgatatagacgcattggttcaactaa Alignment from Pairagon CTTCAGAAAAAATGTTAAAAGCATGGAAAGAAATGGAAGAAAAGGCCATTCACTATTCTGAG tattcaacatacagccaacatgatatattggttgtactctttgttttaagCTTCGGAGATTATGCTAAATGCTTGGAAGGAAATGGAAGAAAAGGCCATCCATTATTCTGAGgtaagctacccccaagcacatgaatgatatagacgcattggttcaactaa Alignment from Exonerate_protein2genome CTTCAGAAAAAATGTTAAAAGCATGGAAAGAAATGGAAGAAAAGGCCATTCACTATTCTGAG tattcaacatacagccaacatgatatattggttgtactctttgttttaagCTTCGGAGATTATGCTAAATGCTTGGAAGGAAATGGAAGAAAAGGCCATCCATTATTCTGAGgtaagctacccccaagcacatgaatgatatagacgcattggttcaactaa Alignment from Exonerate_coding2genome CTTCAGAAAAAATGTTAAAAGCATGGAAAGAAATGGAAGAAAAGGCCATTCACTATTCTGAG tattcaacatacagccaacatgatatattggttgtactctttgttttaagCTTCGGAGATTATGCTAAATGCTTGGAAGGAAATGGAAGAAAAGGCCATCCATTATTCTGAGgtaagctacccccaagcacatgaatgatatagacgcattggttcaactaa Alignment from GeneWise CTTCAGAAAAAATGTTAAAAGCATGGAAAGAAATGGAAGAAAAGGCCATTCACTATTCTGAG tattcaacatacagccaacatgatatattggttgtactctttgttttaagCTTCGGAGATTATGCTAAATGCTTGGAAGGAAATGGAAGAAAAGGCCATCCATTATTCTGAGgtaagctacccccaagcacatgaatgatatagacgcattggttcaactaa #### Chuk_ID8916_12 --> 2 - 2 Original Alignment taCAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAat tctatttgttgttccacagtagtgtgaactcttattctctgtccttttagtaCAAGACAGCAAAATACAATTGCCAATTATACAGTTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGACTAAAGGAGGATTACAGTAGACTCTTCCAGGGGCAGAGATCCACAacgtatgcactttcattttatagcatagctacatagatctgacattactcat Alignment from CESAR taCAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAat tctatttgttgttccacagtagtgtgaactcttattctctgtccttttagtaCAAGACAGCAAAATACAATTGCCAATTATACAGTTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGACTAAAGGAGGATTACAGTAGACTCTTCCAGGGGCAGAGATCCACAacgtatgcactttcattttatagcatagctacatagatctgacattactcat Alignment from Spaln_aa2Genome TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctatttgttgttccacagtagtgtgaactcttattctctgtccttttagTACAAGACAGCAAAATACAATTGCCAATTATACAGTTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGACTAAAGGAGGATTACAGTAGACTCTTCCAGGGGCAGAGATCCACAACgtatgcactttcattttatagcatagctacatagatctgacattactcat Alignment from Spaln_nt2Genome TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctatttgttgttccacagtagtgtgaactcttattctctgtccttttagTACAAGACAGCAAAATACAATTGCCAATTATACAGTTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGACTAAAGGAGGATTACAGTAGACTCTTCCAGGGGCAGAGATCCACAACgtatgcactttcattttatagcatagctacatagatctgacattactcat Alignment from Pairagon TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctatttgttgttccacagtagtgtgaactcttattctctgtccttttagTACAAGACAGCAAAATACAATTGCCAATTATACAGTTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGACTAAAGGAGGATTACAGTAGACTCTTCCAGGGGCAGAGATCCACAACgtatgcactttcattttatagcatagctacatagatctgacattactcat Alignment from Exonerate_protein2genome TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctatttgttgttccacagtagtgtgaactcttattctctgtccttttagTACAAGACAGCAAAATACAATTGCCAATTATACAGTTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGACTAAAGGAGGATTACAGTAGACTCTTCCAGGGGCAGAGATCCACAACgtatgcactttcattttatagcatagctacatagatctgacattactcat Alignment from Exonerate_coding2genome TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctatttgttgttccacagtagtgtgaactcttattctctgtccttttagTACAAGACAGCAAAATACAATTGCCAATTATACAGTTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGACTAAAGGAGGATTACAGTAGACTCTTCCAGGGGCAGAGATCCACAACgtatgcactttcattttatagcatagctacatagatctgacattactcat Alignment from GeneWise TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctatttgttgttccacagtagtgtgaactcttattctctgtccttttagTACAAGACAGCAAAATACAATTGCCAATTATACAGTTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGACTAAAGGAGGATTACAGTAGACTCTTCCAGGGGCAGAGATCCACAACgtatgcactttcattttatagcatagctacatagatctgacattactcat #### Chuk_ID8918_10 --> 0 - 0 Original Alignment ATAGTGCACATCCTAAATATGACTTCTGCAAAAATCATTTCTTTTCTGTTACCATGTGATGAAAGTCTTCATTCACTACAGTCTCGAATTGAGCGTGAAACAGGAATAAATACAGGTTCTCAGGAGCTTCTGTCAGAGACAGGGATTTCTCTGGATCCTCGGAAACCAGCCTCTCAGTGTGTTCTAGATGGAGTT catgatacttgttgtgttttatgttgtgataatgtattgtgtttttctagATAGTACACATCCTAAATATGACATCTGCAATAGTCATCACCTTTCTCTTGCCATGTGATGAAAGTCCCCATTCGCTACAGTCTCGGATTGAACGTGAAATGGGAATAAATACAGGTTCACAAGAGCTCTTGTCAGAGACAGGCATTTCTGTAGATCCACGGAAACCCGCTTCACAGTGTGTTCTAGATGGGGTAgtaaggaatttgtagagactgaacttcaatgaaactcaatggttcaggta Alignment from CESAR ATAGTGCACATCCTAAATATGACTTCTGCAAAAATCATTTCTTTTCTGTTACCATGTGATGAAAGTCTTCATTCACTACAGTCTCGAATTGAGCGTGAAACAGGAATAAATACAGGTTCTCAGGAGCTTCTGTCAGAGACAGGGATTTCTCTGGATCCTCGGAAACCAGCCTCTCAGTGTGTTCTAGATGGAGTT catgatacttgttgtgttttatgttgtgataatgtattgtgtttttctagATAGTACACATCCTAAATATGACATCTGCAATAGTCATCACCTTTCTCTTGCCATGTGATGAAAGTCCCCATTCGCTACAGTCTCGGATTGAACGTGAAATGGGAATAAATACAGGTTCACAAGAGCTCTTGTCAGAGACAGGCATTTCTGTAGATCCACGGAAACCCGCTTCACAGTGTGTTCTAGATGGGGTAgtaaggaatttgtagagactgaacttcaatgaaactcaatggttcaggta Alignment from Spaln_aa2Genome ATAGTGCACATCCTAAATATGACTTCTGCAAAAATCATTTCTTTTCTGTTACCATGTGATGAAAGTCTTCATTCACTACAGTCTCGAATTGAGCGTGAAACAGGAATAAATACAGGTTCTCAGGAGCTTCTGTCAGAGACAGGGATTTCTCTGGATCCTCGGAAACCAGCCTCTCAGTGTGTTCTAGATGGAGTT catgatacttgttgtgttttatgttgtgataatgtattgtgtttttctagATAGTACACATCCTAAATATGACATCTGCAATAGTCATCACCTTTCTCTTGCCATGTGATGAAAGTCCCCATTCGCTACAGTCTCGGATTGAACGTGAAATGGGAATAAATACAGGTTCACAAGAGCTCTTGTCAGAGACAGGCATTTCTGTAGATCCACGGAAACCCGCTTCACAGTGTGTTCTAGATGGGGTAgtaaggaatttgtagagactgaacttcaatgaaactcaatggttcaggta Alignment from Spaln_nt2Genome ATAGTGCACATCCTAAATATGACTTCTGCAAAAATCATTTCTTTTCTGTTACCATGTGATGAAAGTCTTCATTCACTACAGTCTCGAATTGAGCGTGAAACAGGAATAAATACAGGTTCTCAGGAGCTTCTGTCAGAGACAGGGATTTCTCTGGATCCTCGGAAACCAGCCTCTCAGTGTGTTCTAGATGGAGTT catgatacttgttgtgttttatgttgtgataatgtattgtgtttttctagATAGTACACATCCTAAATATGACATCTGCAATAGTCATCACCTTTCTCTTGCCATGTGATGAAAGTCCCCATTCGCTACAGTCTCGGATTGAACGTGAAATGGGAATAAATACAGGTTCACAAGAGCTCTTGTCAGAGACAGGCATTTCTGTAGATCCACGGAAACCCGCTTCACAGTGTGTTCTAGATGGGGTAgtaaggaatttgtagagactgaacttcaatgaaactcaatggttcaggta Alignment from Pairagon ATAGTGCACATCCTAAATATGACTTCTGCAAAAATCATTTCTTTTCTGTTACCATGTGATGAAAGTCTTCATTCACTACAGTCTCGAATTGAGCGTGAAACAGGAATAAATACAGGTTCTCAGGAGCTTCTGTCAGAGACAGGGATTTCTCTGGATCCTCGGAAACCAGCCTCTCAGTGTGTTCTAGATGGAGTT catgatacttgttgtgttttatgttgtgataatgtattgtgtttttctagATAGTACACATCCTAAATATGACATCTGCAATAGTCATCACCTTTCTCTTGCCATGTGATGAAAGTCCCCATTCGCTACAGTCTCGGATTGAACGTGAAATGGGAATAAATACAGGTTCACAAGAGCTCTTGTCAGAGACAGGCATTTCTGTAGATCCACGGAAACCCGCTTCACAGTGTGTTCTAGATGGGGTAgtaaggaatttgtagagactgaacttcaatgaaactcaatggttcaggta Alignment from Exonerate_protein2genome ATAGTGCACATCCTAAATATGACTTCTGCAAAAATCATTTCTTTTCTGTTACCATGTGATGAAAGTCTTCATTCACTACAGTCTCGAATTGAGCGTGAAACAGGAATAAATACAGGTTCTCAGGAGCTTCTGTCAGAGACAGGGATTTCTCTGGATCCTCGGAAACCAGCCTCTCAGTGTGTTCTAGATGGAGTT catgatacttgttgtgttttatgttgtgataatgtattgtgtttttctagATAGTACACATCCTAAATATGACATCTGCAATAGTCATCACCTTTCTCTTGCCATGTGATGAAAGTCCCCATTCGCTACAGTCTCGGATTGAACGTGAAATGGGAATAAATACAGGTTCACAAGAGCTCTTGTCAGAGACAGGCATTTCTGTAGATCCACGGAAACCCGCTTCACAGTGTGTTCTAGATGGGGTAgtaaggaatttgtagagactgaacttcaatgaaactcaatggttcaggta Alignment from Exonerate_coding2genome ATAGTGCACATCCTAAATATGACTTCTGCAAAAATCATTTCTTTTCTGTTACCATGTGATGAAAGTCTTCATTCACTACAGTCTCGAATTGAGCGTGAAACAGGAATAAATACAGGTTCTCAGGAGCTTCTGTCAGAGACAGGGATTTCTCTGGATCCTCGGAAACCAGCCTCTCAGTGTGTTCTAGATGGAGTT catgatacttgttgtgttttatgttgtgataatgtattgtgtttttctagATAGTACACATCCTAAATATGACATCTGCAATAGTCATCACCTTTCTCTTGCCATGTGATGAAAGTCCCCATTCGCTACAGTCTCGGATTGAACGTGAAATGGGAATAAATACAGGTTCACAAGAGCTCTTGTCAGAGACAGGCATTTCTGTAGATCCACGGAAACCCGCTTCACAGTGTGTTCTAGATGGGGTAgtaaggaatttgtagagactgaacttcaatgaaactcaatggttcaggta Alignment from GeneWise ATAGTGCACATCCTAAATATGACTTCTGCAAAAATCATTTCTTTTCTGTTACCATGTGATGAAAGTCTTCATTCACTACAGTCTCGAATTGAGCGTGAAACAGGAATAAATACAGGTTCTCAGGAGCTTCTGTCAGAGACAGGGATTTCTCTGGATCCTCGGAAACCAGCCTCTCAGTGTGTTCTAGATGGAGTT catgatacttgttgtgttttatgttgtgataatgtattgtgtttttctagATAGTACACATCCTAAATATGACATCTGCAATAGTCATCACCTTTCTCTTGCCATGTGATGAAAGTCCCCATTCGCTACAGTCTCGGATTGAACGTGAAATGGGAATAAATACAGGTTCACAAGAGCTCTTGTCAGAGACAGGCATTTCTGTAGATCCACGGAAACCCGCTTCACAGTGTGTTCTAGATGGGGTAgtaaggaatttgtagagactgaacttcaatgaaactcaatggttcaggta #### Chuk_ID8920_8 --> 1 - 2 Original Alignment gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag tggggcatggttcttggatgcactatgccctgcgccttgctccctgttaggCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtcagtgacactttgagtttgggaatatgcccctatctactcataagggc Alignment from CESAR gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag tggggcatggttcttggatgcactatgccctgcgccttgctccctgttaggCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtcagtgacactttgagtttgggaatatgcccctatctactcataagggc Alignment from Spaln_aa2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG tggggcatggttcttggatgcactatgccctgcgccttgctccctgttagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtcagtgacactttgagtttgggaatatgcccctatctactcataagggc Alignment from Spaln_nt2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG tggggcatggttcttggatgcactatgccctgcgccttgctccctgttagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtcagtgacactttgagtttgggaatatgcccctatctactcataagggc Alignment from Pairagon GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG tggggcatggttcttggatgcactatgccctgcgccttgctccctgttagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtcagtgacactttgagtttgggaatatgcccctatctactcataagggc Alignment from Exonerate_protein2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG tggggcatggttcttggatgcactatgccctgcgccttgctccctgttagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtcagtgacactttgagtttgggaatatgcccctatctactcataagggc Alignment from Exonerate_coding2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG tggggcatggttcttggatgcactatgccctgcgccttgctccctgttagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtcagtgacactttgagtttgggaatatgcccctatctactcataagggc Alignment from GeneWise GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG tggggcatggttcttggatgcactatgccctgcgccttgctccctgttagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtcagtgacactttgagtttgggaatatgcccctatctactcataagggc #### Chuk_ID8925_3 --> 1 - 0 Original Alignment gTTGGACCATGCGAATGTTGTAAAGGCCTGTGATGTCCCTGAGGAATTGAACTTTTTAATTAACGATGTGCCTCTTCTGGCAATGGAGTACTGTTCTGGAGGGGACCTCCGGAAG caaattcagtatgggtagttatcctcctctatagcccagcctcttgacagaTTAGAGCATGCAAATGTTGTAAAAGCCTGTGATGTCTCTGAAGAACTGAACTTTTTAATTAATGATGTTCCCCTACTGGCAATGGATTACTGTTTTGGGGGGGACCTGCGGGAGgtgggtttgtttcttcattgaagcgtgcaaactaaagtgcgtaaacttcc Alignment from CESAR gTTGGACCATGCGAATGTTGTAAAGGCCTGTGATGTCCCTGAGGAATTGAACTTTTTAATTAACGATGTGCCTCTTCTGGCAATGGAGTACTGTTCTGGAGGGGACCTCCGGAAG caaattcagtatgggtagttatcctcctctatagcccagcctcttgacagaTTAGAGCATGCAAATGTTGTAAAAGCCTGTGATGTCTCTGAAGAACTGAACTTTTTAATTAATGATGTTCCCCTACTGGCAATGGATTACTGTTTTGGGGGGGACCTGCGGGAGgtgggtttgtttcttcattgaagcgtgcaaactaaagtgcgtaaacttcc Alignment from Spaln_aa2Genome GTTGGACCATGCGAATGTTGTAAAGGCCTGTGATGTCCCTGAGGAATTGAACTTTTTAATTAACGATGTGCCTCTTCTGGCAATGGAGTACTGTTCTGGAGGGGACCTCCGGAAG caaattcagtatgggtagttatcctcctctatagcccagcctcttgacagATTAGAGCATGCAAATGTTGTAAAAGCCTGTGATGTCTCTGAAGAACTGAACTTTTTAATTAATGATGTTCCCCTACTGGCAATGGATTACTGTTTTGGGGGGGACCTGCGGGAGgtgggtttgtttcttcattgaagcgtgcaaactaaagtgcgtaaacttcc Alignment from Spaln_nt2Genome GTTGGACCATGCGAATGTTGTAAAGGCCTGTGATGTCCCTGAGGAATTGAACTTTTTAATTAACGATGTGCCTCTTCTGGCAATGGAGTACTGTTCTGGAGGGGACCTCCGGAAG caaattcagtatgggtagttatcctcctctatagcccagcctcttgacagATTAGAGCATGCAAATGTTGTAAAAGCCTGTGATGTCTCTGAAGAACTGAACTTTTTAATTAATGATGTTCCCCTACTGGCAATGGATTACTGTTTTGGGGGGGACCTGCGGGAGgtgggtttgtttcttcattgaagcgtgcaaactaaagtgcgtaaacttcc Alignment from Pairagon GTTGGACCATGCGAATGTTGTAAAGGCCTGTGATGTCCCTGAGGAATTGAACTTTTTAATTAACGATGTGCCTCTTCTGGCAATGGAGTACTGTTCTGGAGGGGACCTCCGGAAG caaattcagtatgggtagttatcctcctctatagcccagcctcttgacagATTAGAGCATGCAAATGTTGTAAAAGCCTGTGATGTCTCTGAAGAACTGAACTTTTTAATTAATGATGTTCCCCTACTGGCAATGGATTACTGTTTTGGGGGGGACCTGCGGGAGgtgggtttgtttcttcattgaagcgtgcaaactaaagtgcgtaaacttcc Alignment from Exonerate_protein2genome GTTGGACCATGCGAATGTTGTAAAGGCCTGTGATGTCCCTGAGGAATTGAACTTTTTAATTAACGATGTGCCTCTTCTGGCAATGGAGTACTGTTCTGGAGGGGACCTCCGGAAG caaattcagtatgggtagttatcctcctctatagcccagcctcttgacagATTAGAGCATGCAAATGTTGTAAAAGCCTGTGATGTCTCTGAAGAACTGAACTTTTTAATTAATGATGTTCCCCTACTGGCAATGGATTACTGTTTTGGGGGGGACCTGCGGGAGgtgggtttgtttcttcattgaagcgtgcaaactaaagtgcgtaaacttcc Alignment from Exonerate_coding2genome GTTGGACCATGCGAATGTTGTAAAGGCCTGTGATGTCCCTGAGGAATTGAACTTTTTAATTAACGATGTGCCTCTTCTGGCAATGGAGTACTGTTCTGGAGGGGACCTCCGGAAG caaattcagtatgggtagttatcctcctctatagcccagcctcttgacagATTAGAGCATGCAAATGTTGTAAAAGCCTGTGATGTCTCTGAAGAACTGAACTTTTTAATTAATGATGTTCCCCTACTGGCAATGGATTACTGTTTTGGGGGGGACCTGCGGGAGgtgggtttgtttcttcattgaagcgtgcaaactaaagtgcgtaaacttcc Alignment from GeneWise GTTGGACCATGCGAATGTTGTAAAGGCCTGTGATGTCCCTGAGGAATTGAACTTTTTAATTAACGATGTGCCTCTTCTGGCAATGGAGTACTGTTCTGGAGGGGACCTCCGGAAG caaattcagtatgggtagttatcctcctctatagcccagcctcttgacagATTAGAGCATGCAAATGTTGTAAAAGCCTGTGATGTCTCTGAAGAACTGAACTTTTTAATTAATGATGTTCCCCTACTGGCAATGGATTACTGTTTTGGGGGGGACCTGCGGGAGgtgggtttgtttcttcattgaagcgtgcaaactaaagtgcgtaaacttcc #### Cnnm1_ID8739_7 --> 2 - 0 Original Alignment taAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaactttcctgtttccatgtcaccttcagctgtctctcttttccttcagtaAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTTGTGAAGgtaaccccttgaattagtgactggcactcctgaaagtaaacagaacaact Alignment from CESAR taAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaactttcctgtttccatgtcaccttcagctgtctctcttttccttcagtaAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTTGTGAAGgtaaccccttgaattagtgactggcactcctgaaagtaaacagaacaact Alignment from Spaln_aa2Genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaactttcctgtttccatgtcaccttcagctgtctctcttttccttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTTGTGAAGgtaaccccttgaattagtgactggcactcctgaaagtaaacagaacaact Alignment from Spaln_nt2Genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaactttcctgtttccatgtcaccttcagctgtctctcttttccttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTTGTGAAGgtaaccccttgaattagtgactggcactcctgaaagtaaacagaacaact Alignment from Pairagon TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaactttcctgtttccatgtcaccttcagctgtctctcttttccttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTTGTGAAGgtaaccccttgaattagtgactggcactcctgaaagtaaacagaacaact Alignment from Exonerate_protein2genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaactttcctgtttccatgtcaccttcagctgtctctcttttccttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTTGTGAAGgtaaccccttgaattagtgactggcactcctgaaagtaaacagaacaact Alignment from Exonerate_coding2genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaactttcctgtttccatgtcaccttcagctgtctctcttttccttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTTGTGAAGgtaaccccttgaattagtgactggcactcctgaaagtaaacagaacaact Alignment from GeneWise TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaactttcctgtttccatgtcaccttcagctgtctctcttttccttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTTGTGAAGgtaaccccttgaattagtgactggcactcctgaaagtaaacagaacaact #### Cnnm1_ID8740_8 --> 0 - 1 Original Alignment ATCACACGACAACAGTACCAGAACGCACTCACGGCCTGCCACATGGACAGCTCACCCCAGTCCCCGGATATGGAAGCCTTCACTGATGGGGACTCCACCAAGGCCCCCACCACCCGGGGCACACCCCAGACTCCAAAGGACGACCCGGTCCTCACCCTCCTGAGCAACAGGACCAGCTTGCCAt taaatgtaagacacctcaagtcatgagtttgtttttgcttttatttctagATCATGCGCCAGCAATACCTTAATACACTCACATCCACCCATATGGACAGCTCTCCTCAATCCCCTGATATGGAAGCTCTAGCAGATGGGGACTCTAGCAAGGCACCTACTACCTGTGGCACACCCCAGTCTCCAAAGGATGACCCGGTTCTCACCCTCCTGAAGAACAGAACCAGCTTACCAtgtacaccattctgtttagtgtgtttgtgtcaagttgtccaagcagaacag Alignment from CESAR ATCACACGACAACAGTACCAGAACGCACTCACGGCCTGCCACATGGACAGCTCACCCCAGTCCCCGGATATGGAAGCCTTCACTGATGGGGACTCCACCAAGGCCCCCACCACCCGGGGCACACCCCAGACTCCAAAGGACGACCCGGTCCTCACCCTCCTGAGCAACAGGACCAGCTTGCCAt taaatgtaagacacctcaagtcatgagtttgtttttgcttttatttctagATCATGCGCCAGCAATACCTTAATACACTCACATCCACCCATATGGACAGCTCTCCTCAATCCCCTGATATGGAAGCTCTAGCAGATGGGGACTCTAGCAAGGCACCTACTACCTGTGGCACACCCCAGTCTCCAAAGGATGACCCGGTTCTCACCCTCCTGAAGAACAGAACCAGCTTACCAtgtacaccattctgtttagtgtgtttgtgtcaagttgtccaagcagaacag Alignment from Spaln_aa2Genome ATCACACGACAACAGTACCAGAACGCACTCACGGCCTGCCACATGGACAGCTCACCCCAGTCCCCGGATATGGAAGCCTTCACTGATGGGGACTCCACCAAGGCCCCCACCACCCGGGGCACACCCCAGACTCCAAAGGACGACCCGGTCCTCACCCTCCTGAGCAACAGGACCAGCTTGCCAT taaatgtaagacacctcaagtcatgagtttgtttttgcttttatttctagATCATGCGCCAGCAATACCTTAATACACTCACATCCACCCATATGGACAGCTCTCCTCAATCCCCTGATATGGAAGCTCTAGCAGATGGGGACTCTAGCAAGGCACCTACTACCTGTGGCACACCCCAGTCTCCAAAGGATGACCCGGTTCTCACCCTCCTGAAGAACAGAACCAGCTTACCATgtacaccattctgtttagtgtgtttgtgtcaagttgtccaagcagaacag Alignment from Spaln_nt2Genome ATCACACGACAACAGTACCAGAACGCACTCACGGCCTGCCACATGGACAGCTCACCCCAGTCCCCGGATATGGAAGCCTTCACTGATGGGGACTCCACCAAGGCCCCCACCACCCGGGGCACACCCCAGACTCCAAAGGACGACCCGGTCCTCACCCTCCTGAGCAACAGGACCAGCTTGCCAT taaatgtaagacacctcaagtcatgagtttgtttttgcttttatttctagATCATGCGCCAGCAATACCTTAATACACTCACATCCACCCATATGGACAGCTCTCCTCAATCCCCTGATATGGAAGCTCTAGCAGATGGGGACTCTAGCAAGGCACCTACTACCTGTGGCACACCCCAGTCTCCAAAGGATGACCCGGTTCTCACCCTCCTGAAGAACAGAACCAGCTTACCATgtacaccattctgtttagtgtgtttgtgtcaagttgtccaagcagaacag Alignment from Pairagon ATCACACGACAACAGTACCAGAACGCACTCACGGCCTGCCACATGGACAGCTCACCCCAGTCCCCGGATATGGAAGCCTTCACTGATGGGGACTCCACCAAGGCCCCCACCACCCGGGGCACACCCCAGACTCCAAAGGACGACCCGGTCCTCACCCTCCTGAGCAACAGGACCAGCTTGCCAT taaatgtaagacacctcaagtcatgagtttgtttttgcttttatttctagATCATGCGCCAGCAATACCTTAATACACTCACATCCACCCATATGGACAGCTCTCCTCAATCCCCTGATATGGAAGCTCTAGCAGATGGGGACTCTAGCAAGGCACCTACTACCTGTGGCACACCCCAGTCTCCAAAGGATGACCCGGTTCTCACCCTCCTGAAGAACAGAACCAGCTTACCATgtacaccattctgtttagtgtgtttgtgtcaagttgtccaagcagaacag Alignment from Exonerate_protein2genome ATCACACGACAACAGTACCAGAACGCACTCACGGCCTGCCACATGGACAGCTCACCCCAGTCCCCGGATATGGAAGCCTTCACTGATGGGGACTCCACCAAGGCCCCCACCACCCGGGGCACACCCCAGACTCCAAAGGACGACCCGGTCCTCACCCTCCTGAGCAACAGGACCAGCTTGCCAT taaatgtaagacacctcaagtcatgagtttgtttttgcttttatttctagATCATGCGCCAGCAATACCTTAATACACTCACATCCACCCATATGGACAGCTCTCCTCAATCCCCTGATATGGAAGCTCTAGCAGATGGGGACTCTAGCAAGGCACCTACTACCTGTGGCACACCCCAGTCTCCAAAGGATGACCCGGTTCTCACCCTCCTGAAGAACAGAACCAGCTTACCATgtacaccattctgtttagtgtgtttgtgtcaagttgtccaagcagaacag Alignment from Exonerate_coding2genome ATCACACGACAACAGTACCAGAACGCACTCACGGCCTGCCACATGGACAGCTCACCCCAGTCCCCGGATATGGAAGCCTTCACTGATGGGGACTCCACCAAGGCCCCCACCACCCGGGGCACACCCCAGACTCCAAAGGACGACCCGGTCCTCACCCTCCTGAGCAACAGGACCAGCTTGCCAT taaatgtaagacacctcaagtcatgagtttgtttttgcttttatttctagATCATGCGCCAGCAATACCTTAATACACTCACATCCACCCATATGGACAGCTCTCCTCAATCCCCTGATATGGAAGCTCTAGCAGATGGGGACTCTAGCAAGGCACCTACTACCTGTGGCACACCCCAGTCTCCAAAGGATGACCCGGTTCTCACCCTCCTGAAGAACAGAACCAGCTTACCATgtacaccattctgtttagtgtgtttgtgtcaagttgtccaagcagaacag Alignment from GeneWise ATCACACGACAACAGTACCAGAACGCACTCACGGCCTGCCACATGGACAGCTCACCCCAGTCCCCGGATATGGAAGCCTTCACTGATGGGGACTCCACCAAGGCCCCCACCACCCGGGGCACACCCCAGACTCCAAAGGACGACCCGGTCCTCACCCTCCTGAGCAACAGGACCAGCTTGCCAT taaatgtaagacacctcaagtcatgagtttgtttttgcttttatttctagATCATGCGCCAGCAATACCTTAATACACTCACATCCACCCATATGGACAGCTCTCCTCAATCCCCTGATATGGAAGCTCTAGCAGATGGGGACTCTAGCAAGGCACCTACTACCTGTGGCACACCCCAGTCTCCAAAGGATGACCCGGTTCTCACCCTCCTGAAGAACAGAACCAGCTTACCATgtacaccattctgtttagtgtgtttgtgtcaagttgtccaagcagaacag #### Cnnm2_ID10021_2 --> 2 - 1 Original Alignment ggAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACa gggctgccagagttctataatttagcactttccctaaccactcttgctagggAAATCCCACCTTGCAATTGTGCAGTGTGTGAATAATGAGGGTGAGGGGGACCCATTTTACGAGGTTCTGGGTATTGTTACCTCAGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGACGAGACAGATCTGTACagtgaggtccttactcctgtggtaacctctctaagagatatacagctcaat Alignment from CESAR ggAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACa gggctgccagagttctataatttagcactttccctaaccactcttgctagggAAATCCCACCTTGCAATTGTGCAGTGTGTGAATAATGAGGGTGAGGGGGACCCATTTTACGAGGTTCTGGGTATTGTTACCTCAGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGACGAGACAGATCTGTACagtgaggtccttactcctgtggtaacctctctaagagatatacagctcaat Alignment from Spaln_aa2Genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA gggctgccagagttctataatttagcactttccctaaccactcttgctagGGAAATCCCACCTTGCAATTGTGCAGTGTGTGAATAATGAGGGTGAGGGGGACCCATTTTACGAGGTTCTGGGTATTGTTACCTCAGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGACGAGACAGATCTGTACAgtgaggtccttactcctgtggtaacctctctaagagatatacagctcaat Alignment from Spaln_nt2Genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA gggctgccagagttctataatttagcactttccctaaccactcttgctagGGAAATCCCACCTTGCAATTGTGCAGTGTGTGAATAATGAGGGTGAGGGGGACCCATTTTACGAGGTTCTGGGTATTGTTACCTCAGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGACGAGACAGATCTGTACAgtgaggtccttactcctgtggtaacctctctaagagatatacagctcaat Alignment from Pairagon GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA gggctgccagagttctataatttagcactttccctaaccactcttgctagGGAAATCCCACCTTGCAATTGTGCAGTGTGTGAATAATGAGGGTGAGGGGGACCCATTTTACGAGGTTCTGGGTATTGTTACCTCAGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGACGAGACAGATCTGTACAgtgaggtccttactcctgtggtaacctctctaagagatatacagctcaat Alignment from Exonerate_protein2genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA gggctgccagagttctataatttagcactttccctaaccactcttgctagGGAAATCCCACCTTGCAATTGTGCAGTGTGTGAATAATGAGGGTGAGGGGGACCCATTTTACGAGGTTCTGGGTATTGTTACCTCAGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGACGAGACAGATCTGTACAgtgaggtccttactcctgtggtaacctctctaagagatatacagctcaat Alignment from Exonerate_coding2genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA gggctgccagagttctataatttagcactttccctaaccactcttgctagGGAAATCCCACCTTGCAATTGTGCAGTGTGTGAATAATGAGGGTGAGGGGGACCCATTTTACGAGGTTCTGGGTATTGTTACCTCAGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGACGAGACAGATCTGTACAgtgaggtccttactcctgtggtaacctctctaagagatatacagctcaat Alignment from GeneWise GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA gggctgccagagttctataatttagcactttccctaaccactcttgctagGGAAATCCCACCTTGCAATTGTGCAGTGTGTGAATAATGAGGGTGAGGGGGACCCATTTTACGAGGTTCTGGGTATTGTTACCTCAGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGACGAGACAGATCTGTACAgtgaggtccttactcctgtggtaacctctctaagagatatacagctcaat #### Col17a1_ID10274_48 --> 2 - 1 Original Alignment gtCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTA---GATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGc tatgacttgcacacacacattccttactatactgcttactctcgtgacaggtCCTGATGTACGTAGCTTT---ACTGGCCCACCTGGTCCACCTGGACCTCAGTGGCCACCAGGTGATCGC---TTAAGGGAGAACTTCAACTGGAGTAGCAACACCTCAGCCAGATGTGGT------TATAGTTCCTCAATGGGCACA---------AATGGGCGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTGTATATGGAATGAATGGAGAACCATTTCAGGACGGTTTTACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGAGCCAGAGAGCATGCAAcgtattcagaacgtctaccacactgatagggaagccagtccgagttaatgc Alignment from CESAR gtCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGAT---TACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGc tatgacttgcacacacacattccttactatactgcttactctcgtgacaggtCCTGATGTACGTAGCTTT---ACTGGCCCACCTGGTCCACCTGGACCTCAGTGGCCACCAGGTGAT---CGCTTAAGGGAGAACTTCAACTGGAGTAGCAACACCTCAGCCAGATGTGGT------TATAGTTCCTCAATGGGCACA---------AATGGGCGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTGTATATGGAATGAATGGAGAACCATTTCAGGACGGTTTTACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGAGCCAGAGAGCATGCAAcgtattcagaacgtctaccacactgatagggaagccagtccgagttaatgc Alignment from Spaln_aa2Genome GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGAT---TACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC tatgacttgcacacacacattccttactatactgcttactctcgtgacagGTCCTGATGTACGTAGCTTTACT---GGCCCACCTGGTCCACCTGGACCTCAGTGGCCACCAGGTGAT---CGCTTAAGGGAGAACTTCAACTGGAGTAGCAACACCTCAGCCAGATGTGGT------TATAGTTCCTCAATG---------GGCACAAATGGGCGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTGTATATGGAATGAATGGAGAACCATTTCAGGACGGTTTTACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGAGCCAGAGAGCATGCAACgtattcagaacgtctaccacactgatagggaagccagtccgagttaatgc Alignment from Spaln_nt2Genome GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTAC---AACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC tatgacttgcacacacacattccttactatactgcttactctcgtgacagGTCCTGATGTACGTAGCTTTA---CTGGCCCACCTGGTCCACCTGGACCTCAGTGGCCACC---AGGTGATCGCTTAAGGGAGAACTTCAACTGGAGTAGCAACACCTCAGCCAGATGTGG------TTATAGTTCCTCAATGGGCACA---------AATGGGCGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTGTATATGGAATGAATGGAGAACCATTTCAGGACGGTTTTACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGAGCCAGAGAGCATGCAACgtattcagaacgtctaccacactgatagggaagccagtccgagttaatgc Alignment from Pairagon GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAG---ATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC tatgacttgcacacacacattccttactatactgcttactctcgtgacagGTCCTGATGTACGTAGCTTTA---CTGGCCCACCTGGTCCACCTGGACCTCAGTGGCCACC---AGGTGATCGCTTAAGGGAGAACTTCAACTGGAGTAGCAACACCTCAGCCAGATGTGG------TTATAGTTCCTCAATGGGCACA---------AATGGGCGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTGTATATGGAATGAATGGAGAACCATTTCAGGACGGTTTTACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGAGCCAGAGAGCATGCAACgtattcagaacgtctaccacactgatagggaagccagtccgagttaatgc Alignment from Exonerate_protein2genome GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGAT---TACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC tatgacttgcacacacacattccttactatactgcttactctcgtgacagGTCCTGATGTACGTAGCTTT---ACTGGCCCACCTGGTCCACCTGGACCTCAGTGGCCACCAGGTGAT---CGCTTAAGGGAGAACTTCAACTGGAGTAGCAACACCTCAGCCAGATGTGGT------TATAGTTCCTCAATG---------GGCACAAATGGGCGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTGTATATGGAATGAATGGAGAACCATTTCAGGACGGTTTTACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGAGCCAGAGAGCATGCAACgtattcagaacgtctaccacactgatagggaagccagtccgagttaatgc Alignment from Exonerate_coding2genome tatgacttgcacacacacattccttactatactgcttactctcgtgacaggtcctgatgtacgtagctttactggcccacctggtccacctggacctcagtggccaccaggtgatcgcttaagggagaacttcaactggagtagcaacacctcagccagatgtggttatagttcctcaatgggcacaaatgggcgctcacaaggtgaaggggaagcctatggtgctggggatgacagcccatacggcagtgatatcagcccagctggtggctttagtgcatctgcaggcagtggtgtatatggaatgaatggagaaccatttcaggacggttttactggagacctggactactacaacaaattggcagtgagagagccagagagcatgcaacgtattcagaacgtctaccacactgatagggaagccagtccgagttaatgc Alignment from GeneWise GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTAC---AACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC tatgacttgcacacacacattccttactatactgcttactctcgtgacagGTCCTGATGTACGTAGCTTT---ACTGGCCCACCTGGTCCACCTGGACCTCAGTGGCCACCAGGTGAT---CGCTTAAGGGAGAACTTCAACTGGAGTAGCAACACCTCAGCCAGATGTGGT------TATAGTTCCTCAATGGGCACA---------AATGGGCGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTGTATATGGAATGAATGGAGAACCATTTCAGGACGGTTTTACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGAGCCAGAGAGCATGCAACgtattcagaacgtctaccacactgatagggaagccagtccgagttaatgc #### Col17a1_ID10288_34 --> 2 - 1 Original Alignment agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagaaGGATCCTCAACCACCACTGTCCCTGGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTagtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from CESAR agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagaaGGATCCTCAACCACCACTGTCCCTGGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTagtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from Spaln_aa2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagAAGGATCCTCAACCACCACTGTCCCTGGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTAgtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from Spaln_nt2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagAAGGATCCTCAACCACCACTGTCCCTGGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTAgtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from Pairagon AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagAAGGATCCTCAACCACCACTGTCCCTGGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTAgtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from Exonerate_protein2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagAAGGATCCTCAACCACCACTGTCCCTGGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTAgtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from Exonerate_coding2genome cctagttgaggatagtgtaacatggcatattctcatcaccctctctttagaaggatcctcaaccaccactgtccctgggactcctgggccttcaggtgccatggatcctcctgggcctccagggacgcttagtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga Alignment from GeneWise GCGAACCCGGCGCTCCCGGCAGAGTCATGACTTCA---------GAGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG cctagTTGAGGATAGTGTAACATGGCATATTCTCATCACCCTCTCTTTAGAAGGATCCTCAACCACCACTGTCCCTGGGACTCCTGGGCCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACGCTTAgtgagtttttgccaacaaatcaacaataatttacataaaaactgatagga #### Col17a1_ID10296_26 --> 2 - 1 Original Alignment gtGACAAAGGACTCATGGGACCACCAGGACCCAAAg cagtttcgacacagacaggtcaatgacactactgtcttctgttgtttcaggaGATAAAGGCCCGATAGGGCTGGCTGGACCTAAGggtacggagtacctcatgcttgtcaaatctctcctgaactactgggatcta Alignment from CESAR gtGACAAAGGACTCATGGGACCACCAGGACCCAAAg cagtttcgacacagacaggtcaatgacactactgtcttctgttgtttcaggaGATAAAGGCCCGATAGGGCTGGCTGGACCTAAGggtacggagtacctcatgcttgtcaaatctctcctgaactactgggatcta Alignment from Spaln_aa2Genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG cagtttcgacacagacaggtcaatgacactactgtcttctgttgtttcagGAGATAAAGGCCCGATAGGGCTGGCTGGACCTAAGGgtacggagtacctcatgcttgtcaaatctctcctgaactactgggatcta Alignment from Spaln_nt2Genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG cagtttcgacacagacaggtcaatgacactactgtcttctgttgtttcagGAGATAAAGGCCCGATAGGGCTGGCTGGACCTAAGGgtacggagtacctcatgcttgtcaaatctctcctgaactactgggatcta Alignment from Pairagon GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG cagtttcgacacagacaggtcaatgacactactgtcttctgttgtttcagGAGATAAAGGCCCGATAGGGCTGGCTGGACCTAAGGgtacggagtacctcatgcttgtcaaatctctcctgaactactgggatcta Alignment from Exonerate_protein2genome cagtttcgacacagacaggtcaatgacactactgtcttctgttgtttcaggagataaaggcccgatagggctggctggacctaagggtacggagtacctcatgcttgtcaaatctctcctgaactactgggatcta Alignment from Exonerate_coding2genome cagtttcgacacagacaggtcaatgacactactgtcttctgttgtttcaggagataaaggcccgatagggctggctggacctaagggtacggagtacctcatgcttgtcaaatctctcctgaactactgggatcta Alignment from GeneWise cagtttcgacacagacaggtcaatgacactactgtcttctgttgtttcaggagataaaggcccgatagggctggctggacctaagggtacggagtacctcatgcttgtcaaatctctcctgaactactgggatcta #### Col17a1_ID10298_24 --> 2 - 1 Original Alignment gtCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAg taatgtgccatttgtgtaatgctgatacatcttcctttctctgcccacaggcCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAggtaagcgtcatatctccctcttcccagtgaaacagatagggtaattgaaa Alignment from CESAR gtCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAg taatgtgccatttgtgtaatgctgatacatcttcctttctctgcccacaggcCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAggtaagcgtcatatctccctcttcccagtgaaacagatagggtaattgaaa Alignment from Spaln_aa2Genome GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAG taatgtgccatttgtgtaatgctgatacatcttcctttctctgcccacagGCCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAGgtaagcgtcatatctccctcttcccagtgaaacagatagggtaattgaaa Alignment from Spaln_nt2Genome GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAG taatgtgccatttgtgtaatgctgatacatcttcctttctctgcccacagGCCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAGgtaagcgtcatatctccctcttcccagtgaaacagatagggtaattgaaa Alignment from Pairagon GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAG taatgtgccatttgtgtaatgctgatacatcttcctttctctgcccacagGCCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAGgtaagcgtcatatctccctcttcccagtgaaacagatagggtaattgaaa Alignment from Exonerate_protein2genome GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAG taatgtgccatttgtgtaatgctgatacatcttcctttctctgcccacagGCCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAGgtaagcgtcatatctccctcttcccagtgaaacagatagggtaattgaaa Alignment from Exonerate_coding2genome taatgtgccatttgtgtaatgctgatacatcttcctttctctgcccacaggccacagtgggtctcctggaccccaaggtcccccaggtaagcgtcatatctccctcttcccagtgaaacagatagggtaattgaaa Alignment from GeneWise GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAG taatgtgccatttgtgtaatgctgatacatcttcctttctctgcccacagGCCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAGgtaagcgtcatatctccctcttcccagtgaaacagatagggtaattgaaa #### Col17a1_ID10299_23 --> 2 - 1 Original Alignment ggATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAg ccttgtagataccccactgtcttactgtctgttctccatttctggattagggATTGCTGGAGAACAAGGTCCTCAGGGGCTCCCTGGTGTTCCAGGTCCTCTTGGCCTCAGGggttggttcactgacttgggatccagatactaatgtaagtctaacaggtac Alignment from CESAR ggATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAg ccttgtagataccccactgtcttactgtctgttctccatttctggattagggATTGCTGGAGAACAAGGTCCTCAGGGGCTCCCTGGTGTTCCAGGTCCTCTTGGCCTCAGGggttggttcactgacttgggatccagatactaatgtaagtctaacaggtac Alignment from Spaln_aa2Genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG ccttgtagataccccactgtcttactgtctgttctccatttctggattagGGATTGCTGGAGAACAAGGTCCTCAGGGGCTCCCTGGTGTTCCAGGTCCTCTTGGCCTCAGGGgttggttcactgacttgggatccagatactaatgtaagtctaacaggtac Alignment from Spaln_nt2Genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG ccttgtagataccccactgtcttactgtctgttctccatttctggattagGGATTGCTGGAGAACAAGGTCCTCAGGGGCTCCCTGGTGTTCCAGGTCCTCTTGGCCTCAGGGgttggttcactgacttgggatccagatactaatgtaagtctaacaggtac Alignment from Pairagon GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG ccttgtagataccccactgtcttactgtctgttctccatttctggattagGGATTGCTGGAGAACAAGGTCCTCAGGGGCTCCCTGGTGTTCCAGGTCCTCTTGGCCTCAGGGgttggttcactgacttgggatccagatactaatgtaagtctaacaggtac Alignment from Exonerate_protein2genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG ccttgtagataccccactgtcttactgtctgttctccatttctggattagGGATTGCTGGAGAACAAGGTCCTCAGGGGCTCCCTGGTGTTCCAGGTCCTCTTGGCCTCAGGGgttggttcactgacttgggatccagatactaatgtaagtctaacaggtac Alignment from Exonerate_coding2genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAGGTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCC ccttgtagataccccactgtcttactgtctgttctccatttctggattagGGATTGCTGGAGAACAAGGTCCTCAGGGGCTCCCTGGTGTTCCAGGTCCTCTTGGCCTCAGGGGTTGGTTCACTGACTTGGGATCCAGATACTAATgtaagtctaacaggtac Alignment from GeneWise GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG ccttgtagataccccactgtcttactgtctgttctccatttctggattagGGATTGCTGGAGAACAAGGTCCTCAGGGGCTCCCTGGTGTTCCAGGTCCTCTTGGCCTCAGGGgttggttcactgacttgggatccagatactaatgtaagtctaacaggtac #### Col17a1_ID10300_22 --> 2 - 1 Original Alignment gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg taactatctgtactggtgactctttcttaccccatctcttctccccaaaggaGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGATTAGCAGGTCCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from CESAR gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg taactatctgtactggtgactctttcttaccccatctcttctccccaaaggaGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGATTAGCAGGTCCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from Spaln_aa2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGATTAGCAGGTCCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from Spaln_nt2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGATTAGCAGGTCCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from Pairagon GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGATTAGCAGGTCCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from Exonerate_protein2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGATTAGCAGGTCCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from Exonerate_coding2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGATTAGCAGGTCCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta Alignment from GeneWise GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG taactatctgtactggtgactctttcttaccccatctcttctccccaaagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGATTAGCAGGTCCCATGGGGCCCATTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggtgtcaccatcaaagataacgcagtgacctgcatcttattgttgta #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagcaTCTTTCTCAGAAGATACATTGAAAAAGGAGAAACAGGCAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATggtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagcaTCTTTCTCAGAAGATACATTGAAAAAGGAGAAACAGGCAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATggtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAACAGGCAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGgtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAACAGGCAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGgtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from Pairagon GCCACCATCTCTTCAACTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcag----------------CATCTTTCTCAGAAGATACATTGAAAAAGGAGAAACAGGCAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGgtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAACAGGCAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGgtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATGGAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAACAGGCAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGGTAGGGTCTGCACACCAATTGCTTCTTACATAATCGTATCTAgtacactc Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ctgagcatataaggacagggcacttaagtacctgttccccccggggtcagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAACAGGCAGTGTATGCTGCTGACACTTGTCTCAAGGCAGATGTGAATGgtagggtctgcacaccaattgcttcttacataatcgtatctagtacactc #### Col17a1_ID10311_11 --> 2 - 1 Original Alignment tgTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAg gccaacccagagctggaagaacctactttgcttgtctttctcccatacagtgTTTGGGATGCAGAATAATCTTGCCCCAAGTTCTTCTGTCCTCTCTCATGGTACTACTACTGCTTCCACAggtaagttttcatgatctctttagtattagagctgggaccagaaggtcatt Alignment from CESAR tgTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAg gccaacccagagctggaagaacctactttgcttgtctttctcccatacagtgTTTGGGATGCAGAATAATCTTGCCCCAAGTTCTTCTGTCCTCTCTCATGGTACTACTACTGCTTCCACAggtaagttttcatgatctctttagtattagagctgggaccagaaggtcatt Alignment from Spaln_aa2Genome TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG gccaacccagagctggaagaacctactttgcttgtctttctcccatacagTGTTTGGGATGCAGAATAATCTTGCCCCAAGTTCTTCTGTCCTCTCTCATGGTACTACTACTGCTTCCACAGgtaagttttcatgatctctttagtattagagctgggaccagaaggtcatt Alignment from Spaln_nt2Genome TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG gccaacccagagctggaagaacctactttgcttgtctttctcccatacagTGTTTGGGATGCAGAATAATCTTGCCCCAAGTTCTTCTGTCCTCTCTCATGGTACTACTACTGCTTCCACAGgtaagttttcatgatctctttagtattagagctgggaccagaaggtcatt Alignment from Pairagon TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG gccaacccagagctggaagaacctactttgcttgtctttctcccatacagTGTTTGGGATGCAGAATAATCTTGCCCCAAGTTCTTCTGTCCTCTCTCATGGTACTACTACTGCTTCCACAGgtaagttttcatgatctctttagtattagagctgggaccagaaggtcatt Alignment from Exonerate_protein2genome TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG gccaacccagagctggaagaacctactttgcttgtctttctcccatacagTGTTTGGGATGCAGAATAATCTTGCCCCAAGTTCTTCTGTCCTCTCTCATGGTACTACTACTGCTTCCACAGgtaagttttcatgatctctttagtattagagctgggaccagaaggtcatt Alignment from Exonerate_coding2genome TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG gccaacccagagctggaagaacctactttgcttgtctttctcccatacagTGTTTGGGATGCAGAATAATCTTGCCCCAAGTTCTTCTGTCCTCTCTCATGGTACTACTACTGCTTCCACAGgtaagttttcatgatctctttagtattagagctgggaccagaaggtcatt Alignment from GeneWise TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG gccaacccagagctggaagaacctactttgcttgtctttctcccatacagTGTTTGGGATGCAGAATAATCTTGCCCCAAGTTCTTCTGTCCTCTCTCATGGTACTACTACTGCTTCCACAGgtaagttttcatgatctctttagtattagagctgggaccagaaggtcatt #### Col17a1_ID10318_4 --> 2 - 1 Original Alignment gtGGAAGCATCCGAGGCAACGCTTCCACCTCCAGTTACAGGAGAACGCACTCACCGGCCTCTACCCTGCCC---AACTCTCCCGGCTCCACCTTTGAAAGGAAAGCTCACATGACCCGCCATGGAACTTATGAAg gggctaagctcttccccccacacggatccctgccttctctctttccacaggtGGCAGCACCAGAGGCAATGCTTCAACTTCTAGTTATAGACGGACGCACTGCCCAGCGTCTACCCTGCCTAGCAACTCTCCTGGCTGCAACTTTGAAAGAAAGGCTCACATGACCCGACATGGAACTTATGAAggtgtgtgttatgagcctctatagtagaatactcatactgtgcttttgtct Alignment from CESAR gtGGAAGCATCCGAGGCAACGCTTCCACCTCCAGTTACAGGAGAACGCACTCACCGGCCTCTACCCTGCCC---AACTCTCCCGGCTCCACCTTTGAAAGGAAAGCTCACATGACCCGCCATGGAACTTATGAAg gggctaagctcttccccccacacggatccctgccttctctctttccacaggtGGCAGCACCAGAGGCAATGCTTCAACTTCTAGTTATAGACGGACGCACTGCCCAGCGTCTACCCTGCCTAGCAACTCTCCTGGCTGCAACTTTGAAAGAAAGGCTCACATGACCCGACATGGAACTTATGAAggtgtgtgttatgagcctctatagtagaatactcatactgtgcttttgtct Alignment from Spaln_aa2Genome GTGGAAGCATCCGAGGCAACGCTTCCACCTCCAGTTACAGGAGAACGCACTCACCGGCCTCTACCCTGCCC---AACTCTCCCGGCTCCACCTTTGAAAGGAAAGCTCACATGACCCGCCATGGAACTTATGAAG gggctaagctcttccccccacacggatccctgccttctctctttccacagGTGGCAGCACCAGAGGCAATGCTTCAACTTCTAGTTATAGACGGACGCACTGCCCAGCGTCTACCCTGCCTAGCAACTCTCCTGGCTGCAACTTTGAAAGAAAGGCTCACATGACCCGACATGGAACTTATGAAGgtgtgtgttatgagcctctatagtagaatactcatactgtgcttttgtct Alignment from Spaln_nt2Genome GTGGAAGCATCCGAGGCAACGCTTCCACCTCCAGTTACAGGAGAACGCACTCACCGGCCTCTACCCTGCC---CAACTCTCCCGGCTCCACCTTTGAAAGGAAAGCTCACATGACCCGCCATGGAACTTATGAAG gggctaagctcttccccccacacggatccctgccttctctctttccacagGTGGCAGCACCAGAGGCAATGCTTCAACTTCTAGTTATAGACGGACGCACTGCCCAGCGTCTACCCTGCCTAGCAACTCTCCTGGCTGCAACTTTGAAAGAAAGGCTCACATGACCCGACATGGAACTTATGAAGgtgtgtgttatgagcctctatagtagaatactcatactgtgcttttgtct Alignment from Pairagon GTGGAAGCATCCGAGGCAACGCTTCCACCTCCAGTTACAGGAGAACGCACTCACCGGCCTCTACCCTGCC---CAACTCTCCCGGCTCCACCTTTGAAAGGAAAGCTCACATGACCCGCCATGGAACTTATGAAG gggctaagctcttccccccacacggatccctgccttctctctttccacagGTGGCAGCACCAGAGGCAATGCTTCAACTTCTAGTTATAGACGGACGCACTGCCCAGCGTCTACCCTGCCTAGCAACTCTCCTGGCTGCAACTTTGAAAGAAAGGCTCACATGACCCGACATGGAACTTATGAAGgtgtgtgttatgagcctctatagtagaatactcatactgtgcttttgtct Alignment from Exonerate_protein2genome GTGGAAGCATCCGAGGCAACGCTTCCACCTCCAGTTACAGGAGAACGCACTCACCGGCCTCTACCCTGCCC---AACTCTCCCGGCTCCACCTTTGAAAGGAAAGCTCACATGACCCGCCATGGAACTTATGAAG gggctaagctcttccccccacacggatccctgccttctctctttccacagGTGGCAGCACCAGAGGCAATGCTTCAACTTCTAGTTATAGACGGACGCACTGCCCAGCGTCTACCCTGCCTAGCAACTCTCCTGGCTGCAACTTTGAAAGAAAGGCTCACATGACCCGACATGGAACTTATGAAGgtgtgtgttatgagcctctatagtagaatactcatactgtgcttttgtct Alignment from Exonerate_coding2genome gggctaagctcttccccccacacggatccctgccttctctctttccacaggtggcagcaccagaggcaatgcttcaacttctagttatagacggacgcactgcccagcgtctaccctgcctagcaactctcctggctgcaactttgaaagaaaggctcacatgacccgacatggaacttatgaaggtgtgtgttatgagcctctatagtagaatactcatactgtgcttttgtct Alignment from GeneWise GTGGAAGCATCCGAGGCAACGCTTCCACCTCCAGTTACAGGAGAACGCACTCACCGGCCTCTACCCTGCCC---AACTCTCCCGGCTCCACCTTTGAAAGGAAAGCTCACATGACCCGCCATGGAACTTATGAAGGGAG gggctaagctcttccccccacacggatccctgccttctctctttccacagGTGGCAGCACCAGAGGCAATGCTTCAACTTCTAGTTATAGACGGACGCACTGCCCAGCGTCTACCCTGCCTAGCAACTCTCCTGGCTGCAACTTTGAAAGAAAGGCTCACATGACCCGACATGGAACTTATGAAGGTGTgtgttatgagcctctatagtagaatactcatactgtgcttttgtct #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG atgtctgagccaaaatgcttgagaccagctcgcttttgtttgccttctagACTGGCCATGTGGACAAGGCATTCCCAACAGTCTGTGGACACACAGGGTCTGTTCTAGATATAGACTGGTGTCCACACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTACTgtgagtaaaacctgttcagtttttattgtttcaagtgcaccaacttccag #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagggTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGTACCGTTTGGACAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttttttctgttttaatccttgtagGA Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagggTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGTACCGTTTGGACAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttatggcaccttctttctcttcagGA Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGTACCGTTTGGACAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttttttctgttttaatccttgtagGA Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGTACCGTTTGGACAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttttttctgttttaatccttgtagGA Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGTACCGTTTGGACAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttttttctgttttaatccttgtagGA Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGTACCGTTTGGACAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttttttctgttttaatccttgtagGA Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGTACCGTTTGGACAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttttttctgttttaatccttgtagGA Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA GA atttagttcataataaactcatttgcactttcttgcccttctctctgcagGGTGTGATAATGTGCTACTTATTTGGAATGTGGATGCCGCCGAAGACCTGTACCGTTTGGACAGTTTGCATCCCGACCTTGCTTATAATGTCAGTTGGAACCACATTGGAAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGTGTTCGGATCACTGATCCTAGGCGGGATACCTTGGTTGCAgtgagaacaaatgagtatcctgttttttttctgttttaatccttgtagGA #### Coro1b_ID355_5 --> 0 - 0 Original Alignment CA GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA CAgtaagcacaaatgagtatcctgttttatggcaccttctttctcttcagGAACATGAAAAGGCCCATGATGGCGCCCAGCCTATGCGGGCCATCTTTGTAGCTGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaccgcctaagcagggtgagtttcagtgaacactcaacttcacatctta Alignment from CESAR CA GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA CAgtgagaacaaatgagtatcctgttttatggcaccttctttctcttcagGAACATGAAAAGGCCCATGATGGCGCCCAGCCTATGCGGGCCATCTTTGTAGCTGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaccgcctaagcagggtgagtttcagtgaacactcaacttcacatctta Alignment from Spaln_aa2Genome CA GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA CAgtaagcacaaatgagtatcctgttttatggcaccttctttctcttcagGAACATGAAAAGGCCCATGATGGCGCCCAGCCTATGCGGGCCATCTTTGTAGCTGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaccgcctaagcagggtgagtttcagtgaacactcaacttcacatctta Alignment from Spaln_nt2Genome CA GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA CAgtaagcacaaatgagtatcctgttttatggcaccttctttctcttcagGAACATGAAAAGGCCCATGATGGCGCCCAGCCTATGCGGGCCATCTTTGTAGCTGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaccgcctaagcagggtgagtttcagtgaacactcaacttcacatctta Alignment from Pairagon CA GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA CAgtaagcacaaatgagtatcctgttttatggcaccttctttctcttcagGAACATGAAAAGGCCCATGATGGCGCCCAGCCTATGCGGGCCATCTTTGTAGCTGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaccgcctaagcagggtgagtttcagtgaacactcaacttcacatctta Alignment from Exonerate_protein2genome CA GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA CAgtaagcacaaatgagtatcctgttttatggcaccttctttctcttcagGAACATGAAAAGGCCCATGATGGCGCCCAGCCTATGCGGGCCATCTTTGTAGCTGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaccgcctaagcagggtgagtttcagtgaacactcaacttcacatctta Alignment from Exonerate_coding2genome CA GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA CAgtaagcacaaatgagtatcctgttttatggcaccttctttctcttcagGAACATGAAAAGGCCCATGATGGCGCCCAGCCTATGCGGGCCATCTTTGTAGCTGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaccgcctaagcagggtgagtttcagtgaacactcaacttcacatctta Alignment from GeneWise CA------------------------------------------------GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA CAGTAAGCACAAATGAGTATCCTGTTTTATGGCACCTTCTTTCTCTTCAGGAACATGAAAAGGCCCATGATGGCGCCCAGCCTATGCGGGCCATCTTTGTAGCTGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaccgcctaagcagggtgagtttcagtgaacactcaacttcacatctta #### Cpeb3_ID7273_7 --> 2 - 0 Original Alignment gcTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatactagagcttttgggagtgctttttgtttctcttacaatttttcaggtTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCTTGGAGGAGGATGGAAAGCTGTACCTATGTGTTTCAAGCCCAACCACTAAGGATAAGCCAgtaagtgacatgccatgccccttacccttttcaaaattggaatgagaagt Alignment from CESAR gcTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatactagagcttttgggagtgctttttgtttctcttacaatttttcaggtTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCTTGGAGGAGGATGGAAAGCTGTACCTATGTGTTTCAAGCCCAACCACTAAGGATAAGCCAgtaagtgacatgccatgccccttacccttttcaaaattggaatgagaagt Alignment from Spaln_aa2Genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatactagagcttttgggagtgctttttgtttctcttacaatttttcagGTTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCTTGGAGGAGGATGGAAAGCTGTACCTATGTGTTTCAAGCCCAACCACTAAGGATAAGCCAgtaagtgacatgccatgccccttacccttttcaaaattggaatgagaagt Alignment from Spaln_nt2Genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatactagagcttttgggagtgctttttgtttctcttacaatttttcagGTTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCTTGGAGGAGGATGGAAAGCTGTACCTATGTGTTTCAAGCCCAACCACTAAGGATAAGCCAgtaagtgacatgccatgccccttacccttttcaaaattggaatgagaagt Alignment from Pairagon GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatactagagcttttgggagtgctttttgtttctcttacaatttttcagGTTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCTTGGAGGAGGATGGAAAGCTGTACCTATGTGTTTCAAGCCCAACCACTAAGGATAAGCCAgtaagtgacatgccatgccccttacccttttcaaaattggaatgagaagt Alignment from Exonerate_protein2genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatactagagcttttgggagtgctttttgtttctcttacaatttttcagGTTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCTTGGAGGAGGATGGAAAGCTGTACCTATGTGTTTCAAGCCCAACCACTAAGGATAAGCCAgtaagtgacatgccatgccccttacccttttcaaaattggaatgagaagt Alignment from Exonerate_coding2genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatactagagcttttgggagtgctttttgtttctcttacaatttttcagGTTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCTTGGAGGAGGATGGAAAGCTGTACCTATGTGTTTCAAGCCCAACCACTAAGGATAAGCCAgtaagtgacatgccatgccccttacccttttcaaaattggaatgagaagt Alignment from GeneWise GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatactagagcttttgggagtgctttttgtttctcttacaatttttcagGTTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCTTGGAGGAGGATGGAAAGCTGTACCTATGTGTTTCAAGCCCAACCACTAAGGATAAGCCAgtaagtgacatgccatgccccttacccttttcaaaattggaatgagaagt #### Cpeb3_ID7275_6 --> 2 - 1 Original Alignment atGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAg ctagaattctgaacattacactgtaactgcattccacctgtctctcacagatGAAATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTTGTAGATTGGCCTCATAAAGCAGAGAGCAAGGCATACTTCCCCCCCAAAggtaagtaatacatggtaaccatctgcctgacagccacaccttgatggagc Alignment from CESAR atGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAg ctagaattctgaacattacactgtaactgcattccacctgtctctcacagatGAAATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTTGTAGATTGGCCTCATAAAGCAGAGAGCAAGGCATACTTCCCCCCCAAAggtaagtaatacatggtaaccatctgcctgacagccacaccttgatggagc Alignment from Spaln_aa2Genome ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG ctagaattctgaacattacactgtaactgcattccacctgtctctcacagATGAAATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTTGTAGATTGGCCTCATAAAGCAGAGAGCAAGGCATACTTCCCCCCCAAAGgtaagtaatacatggtaaccatctgcctgacagccacaccttgatggagc Alignment from Spaln_nt2Genome ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG ctagaattctgaacattacactgtaactgcattccacctgtctctcacagATGAAATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTTGTAGATTGGCCTCATAAAGCAGAGAGCAAGGCATACTTCCCCCCCAAAGgtaagtaatacatggtaaccatctgcctgacagccacaccttgatggagc Alignment from Pairagon ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG ctagaattctgaacattacactgtaactgcattccacctgtctctcacagATGAAATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTTGTAGATTGGCCTCATAAAGCAGAGAGCAAGGCATACTTCCCCCCCAAAGgtaagtaatacatggtaaccatctgcctgacagccacaccttgatggagc Alignment from Exonerate_protein2genome ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG ctagaattctgaacattacactgtaactgcattccacctgtctctcacagATGAAATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTTGTAGATTGGCCTCATAAAGCAGAGAGCAAGGCATACTTCCCCCCCAAAGgtaagtaatacatggtaaccatctgcctgacagccacaccttgatggagc Alignment from Exonerate_coding2genome ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG ctagaattctgaacattacactgtaactgcattccacctgtctctcacagATGAAATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTTGTAGATTGGCCTCATAAAGCAGAGAGCAAGGCATACTTCCCCCCCAAAGgtaagtaatacatggtaaccatctgcctgacagccacaccttgatggagc Alignment from GeneWise ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG ctagaattctgaacattacactgtaactgcattccacctgtctctcacagATGAAATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTTGTAGATTGGCCTCATAAAGCAGAGAGCAAGGCATACTTCCCCCCCAAAGgtaagtaatacatggtaaccatctgcctgacagccacaccttgatggagc #### Cpn1_ID8875_5 --> 0 - 1 Original Alignment CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGg agttgtgtaggttgggtcattactccttgtgagtaacttgtgttctgtagCTG---GAAGTATCATCCTTCACCCCAGGATGGATACACCGAGGTTGGAATTGTGGGGAC---TATCCCGATGGCATTACAAATGGGGCATCGTGGTATTCTCTCAGTAAAggtgactatagttagaggctggcttcactgtggatagttggatatggtctg Alignment from CESAR CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGg agttgtgtaggttgggtcattactccttgtgagtaacttgtgttctgtagCTG---GAAGTATCATCCTTCACCCCAGGATGGATACACCGAGGTTGGAATTGTGGGGACTAT---CCCGATGGCATTACAAATGGGGCATCGTGGTATTCTCTCAGTAAAggtgactatagttagaggctggcttcactgtggatagttggatatggtctg Alignment from Spaln_aa2Genome CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG agttgtgtaggttgggtcattactccttgtgagtaacttgtgttctgtagCTG---GAAGTATCATCCTTCACCCCAGGATGGATACACCGAGGTTGGAATTGTGGGGACTAT---CCCGATGGCATTACAAATGGGGCATCGTGGTATTCTCTCAGTAAAGgtgactatagttagaggctggcttcactgtggatagttggatatggtctg Alignment from Spaln_nt2Genome CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG agttgtgtaggttgggtcattactccttgtgagtaacttgtgttctgtagCTGG---AAGTATCATCCTTCACCCCAGGATGGATACACCGAGGTTGGAATTGTGGGG---ACTATCCCGATGGCATTACAAATGGGGCATCGTGGTATTCTCTCAGTAAAGgtgactatagttagaggctggcttcactgtggatagttggatatggtctg Alignment from Pairagon CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG agttgtgtaggttgggtcattactccttgtgagtaacttgtgttctgtagctggaagtatcatccttcaccccag----------------------------GATGGATACACCGAGGTTGGAATTGTGGGGACTA---TCCCGATGGCATTACAAATGGGGCATCGTGGTATTCTCTCAGTAAAGgtgactatagttagaggctggcttcactgtggatagttggatatggtctg Alignment from Exonerate_protein2genome GATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG agttgtgtaggttgggtcattactccttgtgagtaacttgtgttctgtagctggaagtatcatccttcaccccagGATGGATACACCGAGGTTGGAATTGTGGGGACTAT---CCCGATGGCATTACAAATGGGGCATCGTGGTATTCTCTCAGTAAAGgtgactatagttagaggctggcttcactgtggatagttggatatggtctg Alignment from Exonerate_coding2genome GATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG agttgtgtaggttgggtcattactccttgtgagtaacttgtgttctgtagctggaagtatcatccttcaccccagGATGGATACACCGAGGTTGGAATTGTGGGGACTAT---CCCGATGGCATTACAAATGGGGCATCGTGGTATTCTCTCAGTAAAGgtgactatagttagaggctggcttcactgtggatagttggatatggtctg Alignment from GeneWise CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG agttgtgtaggttgggtcattactccttgtgagtaacttgtgttctgtagCTG---GAAGTATCATCCTTCACCCCAGGATGGATACACCGAGGTTGGAATTGTGGGGACTAT---CCCGATGGCATTACAAATGGGGCATCGTGGTATTCTCTCAGTAAAGgtgactatagttagaggctggcttcactgtggatagttggatatggtctg #### Cpsf7_ID2862_2 --> 0 - 0 Original Alignment GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gagtcaggctaaagttaatacagatacaaaagtctttggtgtattttcagCACTCAGAGTTCAACAACACTGATCAAATTGACTTATATGATGATGTACTGACAGCTGCCTCCCAGCCTTCAGATGACAGAAGCAGTAGCACAGAACCACCCCCTCCAGTTCGCCAAGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTACACATACTGTGGACTGCGAAGTCAGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtatgtgtgtgtaattgatagaagcagagtggtgatggtcttttaggtga Alignment from CESAR GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gagtcaggctaaagttaatacagatacaaaagtctttggtgtattttcagCACTCAGAGTTCAACAACACTGATCAAATTGACTTATATGATGATGTACTGACAGCTGCCTCCCAGCCTTCAGATGACAGAAGCAGTAGCACAGAACCACCCCCTCCAGTTCGCCAAGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTACACATACTGTGGACTGCGAAGTCAGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtatgtgtgtgtaattgatagaagcagagtggtgatggtcttttaggtga Alignment from Spaln_aa2Genome GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gagtcaggctaaagttaatacagatacaaaagtctttggtgtattttcagCACTCAGAGTTCAACAACACTGATCAAATTGACTTATATGATGATGTACTGACAGCTGCCTCCCAGCCTTCAGATGACAGAAGCAGTAGCACAGAACCACCCCCTCCAGTTCGCCAAGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTACACATACTGTGGACTGCGAAGTCAGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtatgtgtgtgtaattgatagaagcagagtggtgatggtcttttaggtga Alignment from Spaln_nt2Genome GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gagtcaggctaaagttaatacagatacaaaagtctttggtgtattttcagCACTCAGAGTTCAACAACACTGATCAAATTGACTTATATGATGATGTACTGACAGCTGCCTCCCAGCCTTCAGATGACAGAAGCAGTAGCACAGAACCACCCCCTCCAGTTCGCCAAGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTACACATACTGTGGACTGCGAAGTCAGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtatgtgtgtgtaattgatagaagcagagtggtgatggtcttttaggtga Alignment from Pairagon GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gagtcaggctaaagttaatacagatacaaaagtctttggtgtattttcagCACTCAGAGTTCAACAACACTGATCAAATTGACTTATATGATGATGTACTGACAGCTGCCTCCCAGCCTTCAGATGACAGAAGCAGTAGCACAGAACCACCCCCTCCAGTTCGCCAAGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTACACATACTGTGGACTGCGAAGTCAGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtatgtgtgtgtaattgatagaagcagagtggtgatggtcttttaggtga Alignment from Exonerate_protein2genome GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gagtcaggctaaagttaatacagatacaaaagtctttggtgtattttcagCACTCAGAGTTCAACAACACTGATCAAATTGACTTATATGATGATGTACTGACAGCTGCCTCCCAGCCTTCAGATGACAGAAGCAGTAGCACAGAACCACCCCCTCCAGTTCGCCAAGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTACACATACTGTGGACTGCGAAGTCAGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtatgtgtgtgtaattgatagaagcagagtggtgatggtcttttaggtga Alignment from Exonerate_coding2genome GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gagtcaggctaaagttaatacagatacaaaagtctttggtgtattttcagCACTCAGAGTTCAACAACACTGATCAAATTGACTTATATGATGATGTACTGACAGCTGCCTCCCAGCCTTCAGATGACAGAAGCAGTAGCACAGAACCACCCCCTCCAGTTCGCCAAGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTACACATACTGTGGACTGCGAAGTCAGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtatgtgtgtgtaattgatagaagcagagtggtgatggtcttttaggtga Alignment from GeneWise GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gagtcaggctaaagttaatacagatacaaaagtctttggtgtattttcagCACTCAGAGTTCAACAACACTGATCAAATTGACTTATATGATGATGTACTGACAGCTGCCTCCCAGCCTTCAGATGACAGAAGCAGTAGCACAGAACCACCCCCTCCAGTTCGCCAAGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTACACATACTGTGGACTGCGAAGTCAGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtatgtgtgtgtaattgatagaagcagagtggtgatggtcttttaggtga #### Crtac1_ID8458_13 --> 0 - 1 Original Alignment TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGg agcatttcaatgatacctgtacaggagcttgtttctgtccccctaaatagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGggtaggttggccatcacatgggtgactgagtaggaggttctacatgggcct Alignment from CESAR TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGg agcatttcaatgatacctgtacaggagcttgtttctgtccccctaaatagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGggtaggttggccatcacatgggtgactgagtaggaggttctacatgggcct Alignment from Spaln_aa2Genome TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG agcatttcaatgatacctgtacaggagcttgtttctgtccccctaaatagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtaggttggccatcacatgggtgactgagtaggaggttctacatgggcct Alignment from Spaln_nt2Genome TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG agcatttcaatgatacctgtacaggagcttgtttctgtccccctaaatagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtaggttggccatcacatgggtgactgagtaggaggttctacatgggcct Alignment from Pairagon TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG agcatttcaatgatacctgtacaggagcttgtttctgtccccctaaatagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtaggttggccatcacatgggtgactgagtaggaggttctacatgggcct Alignment from Exonerate_protein2genome TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG agcatttcaatgatacctgtacaggagcttgtttctgtccccctaaatagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtaggttggccatcacatgggtgactgagtaggaggttctacatgggcct Alignment from Exonerate_coding2genome TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG agcatttcaatgatacctgtacaggagcttgtttctgtccccctaaatagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtaggttggccatcacatgggtgactgagtaggaggttctacatgggcct Alignment from GeneWise TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG agcatttcaatgatacctgtacaggagcttgtttctgtccccctaaatagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtaggttggccatcacatgggtgactgagtaggaggttctacatgggcct #### Crtac1_ID8461_11 --> 0 - 1 Original Alignment GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTT---GGCCTGg ctgaactttctaggcccacatggttgaatttgaatgtgcttggttcttagGGTTTCAGTAACAACTGGCTCCATGTAGTACCTCAA------TTTGGAGCATTTGCACGAGGGACAAAAGTACTACTCTACACCATGAAGAGTGGGGTGCATCTACATATCATTGATGGTGGGGGTTCTGGGTATCTGTTTGAAATGGACCCTCTGACACATTTCTTTGACCTGggtatgttggaactaaatagggaaatggtcaggttcagtgtatgctcagtg Alignment from CESAR GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACAT---TTTGGCCTGg ctgaactttctaggcccacatggttgaatttgaatgtgcttggttcttagGGTTTCAGTAACAACTGGCTCCATGTAGTACCT------CAATTTGGAGCATTTGCACGAGGGACAAAAGTACTACTCTACACCATGAAGAGTGGGGTGCATCTACATATCATTGATGGTGGGGGTTCTGGGTATCTGTTTGAAATGGACCCTCTGACACATTTCTTTGACCTGggtatgttggaactaaatagggaaatggtcaggttcagtgtatgctcagtg Alignment from Spaln_aa2Genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACAT---TTTGGCCTGG ctgaactttctaggcccacatggttgaatttgaatgtgcttggttcttagGGTTTCAGTAACAACTGGCTCCATGTAGTACCT------CAATTTGGAGCATTTGCACGAGGGACAAAAGTACTACTCTACACCATGAAGAGTGGGGTGCATCTACATATCATTGATGGTGGGGGTTCTGGGTATCTGTTTGAAATGGACCCTCTGACACATTTCTTTGACCTGGgtatgttggaactaaatagggaaatggtcaggttcagtgtatgctcagtg Alignment from Spaln_nt2Genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCAT---TGATGGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTT---TGGCCTGG ctgaactttctaggcccacatggttgaatttgaatgtgcttggttcttagGGTTTCAGTAACAACTGGCTCCATGTAGTACCT------CAATTTGGAGCATTTGCACGAGGGACAAAAGTACTACTCTACACCATGAAGAGTGGGGTGCATCTACATATCATTGATGGTGGGGGTTCTGGGTATCTGTTTGAAATGGACCCTCTGACACATTTCTTTGACCTGGgtatgttggaactaaatagggaaatggtcaggttcagtgtatgctcagtg Alignment from Pairagon GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTC-----------------------------GCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGA---TGGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACAT---TTTGGCCTGG ctgaactttctaggcccacatggttgaatttgaatgtgcttggttcttagGGTTTCAGTAACAACTGGCTCCATGTAGTACCTCAATTTGGAGCATTTGCACGAGGGACAAAAGTAC-----------------------------------TACTCTACACCATGAAGAGTGGGGTGCATCTACATATCATTGATGGTGGGGGTTCTGGGTATCTGTTTGAAATGGACCCTCTGACACATTTCTTTGACCTGGgtatgttggaactaaatagggaaatggtcaggttcagtgtatgctcagtg Alignment from Exonerate_protein2genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACAT---TTTGGCCTGG ctgaactttctaggcccacatggttgaatttgaatgtgcttggttcttagGGTTTCAGTAACAACTGGCTCCATGTAGTACCT------CAATTTGGAGCATTTGCACGAGGGACAAAAGTACTACTCTACACCATGAAGAGTGGGGTGCATCTACATATCATTGATGGTGGGGGTTCTGGGTATCTGTTTGAAATGGACCCTCTGACACATTTCTTTGACCTGGgtatgttggaactaaatagggaaatggtcaggttcagtgtatgctcagtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGATGGGGGT---TCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTT---GGCCTGG ctgaactttctaggcccacatggttgaatttgaatgtgcttggttcttagGGTTTCAGTAACAACTGGCTCCATGTAGTACCTCAA------TTTGGAGCATTTGCACGAGGGACAAAAGTACTACTCTACACCATGAAGAGTGGGGTGCATCTACATATCATTGATGGTGGGGGTTCTGGGTATCTGTTTGAAATGGACCCTCTGACACATTTCTTTGACCTGGgtatgttggaactaaatagggaaatggtcaggttcagtgtatgctcagtg #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccacacgcatactacactacctgcaataatcaattttatattaccaggTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaagtagccacaggctaccagaaattcaaatgggactggaccaaaaaag Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccacacgcatactacactacctgcaataatcaattttatattaccaggTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaagtagccacaggctaccagaaattcaaatgggactggaccaaaaaag Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccacacgcatactacactacctgcaataatcaattttatattaccagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaagtagccacaggctaccagaaattcaaatgggactggaccaaaaaag Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccacacgcatactacactacctgcaataatcaattttatattaccagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaagtagccacaggctaccagaaattcaaatgggactggaccaaaaaag Alignment from Pairagon GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccacacgcatactacactacctgcaataatcaattttatattaccagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaagtagccacaggctaccagaaattcaaatgggactggaccaaaaaag Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccacacgcatactacactacctgcaataatcaattttatattaccagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtaagtagccacaggctaccagaaattcaaatgggactggaccaaaaaag Alignment from Exonerate_coding2genome ttaccacacgcatactacactacctgcaataatcaattttatattaccaggttggaggtgacacgccgtctcttcccgccaatcccaggaattagggacaaggtgtctgatgatgtgcgagtgaaccctgaggtaagtagccacaggctaccagaaattcaaatgggactggaccaaaaaag Alignment from GeneWise GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAGACCCTCAGGAAGGACCTCCTGCAGCCC ttaccacacgcatactacactacctgcaataatcaattttatattaccagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGGTAAGTAGCCACAGGCTACCAGAAATTcaaatgggactggaccaaaaaag #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCAGGAAGCACACCCCGGAAG aaagcctgcctatataggacataaattaacttttcatgtttttctttaagAGCACAGAACCAGGAAGCACACCTCGGCAGgtgagttagcacaaaacatggcctggttttaaaaaagccacaatcatgtc Alignment from CESAR AGCGCAGAGCCAGGAAGCACACCCCGGAAG aaagcctgcctatataggacataaattaacttttcatgtttttctttaagAGCACAGAACCAGGAAGCACACCTCGGCAGgtgagttagcacaaaacatggcctggttttaaaaaagccacaatcatgtc Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG aaagcctgcctatataggacataaattaacttttcatgtttttctttaagAGCACAGAACCAGGAAGCACACCTCGGCAGgtgagttagcacaaaacatggcctggttttaaaaaagccacaatcatgtc Alignment from Spaln_nt2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG aaagcctgcctatataggacataaattaacttttcatgtttttctttaagAGCACAGAACCAGGAAGCACACCTCGGCAGgtgagttagcacaaaacatggcctggttttaaaaaagccacaatcatgtc Alignment from Pairagon AGCGCAGAGCCAGGAAGCACACCCCGGAAG aaagcctgcctatataggacataaattaacttttcatgtttttctttaagAGCACAGAACCAGGAAGCACACCTCGGCAGgtgagttagcacaaaacatggcctggttttaaaaaagccacaatcatgtc Alignment from Exonerate_protein2genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG aaagcctgcctatataggacataaattaacttttcatgtttttctttaagAGCACAGAACCAGGAAGCACACCTCGGCAGgtgagttagcacaaaacatggcctggttttaaaaaagccacaatcatgtc Alignment from Exonerate_coding2genome aaagcctgcctatataggacataaattaacttttcatgtttttctttaagagcacagaaccaggaagcacacctcggcaggtgagttagcacaaaacatggcctggttttaaaaaagccacaatcatgtc Alignment from GeneWise AGCGCAGAGCCAGGAAGCACACCCCGGAAG aaagcctgcctatataggacataaattaacttttcatgtttttctttaagAGCACAGAACCAGGAAGCACACCTCGGCAGgtgagttagcacaaaacatggcctggttttaaaaaagccacaatcatgtc #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcattgtcagtgtatttgtgtgcttcattaccctcctctttgtcttgaagagCGCCTTGGTCCTCCATGTGATGTCACAGCAGCCTGTAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGATTATCAGTTTGAGGTTCAGTGGCAGgtgagttgaggcctcaattttctgggaaagcctgcctatataggacataa Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcattgtcagtgtatttgtgtgcttcattaccctcctctttgtcttgaagagCGCCTTGGTCCTCCATGTGATGTCACAGCAGCCTGTAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGATTATCAGTTTGAGGTTCAGTGGCAGgtgagttgaggcctcaattttctgggaaagcctgcctatataggacataa Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcattgtcagtgtatttgtgtgcttcattaccctcctctttgtcttgaagAGCGCCTTGGTCCTCCATGTGATGTCACAGCAGCCTGTAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGATTATCAGTTTGAGGTTCAGTGGCAGgtgagttgaggcctcaattttctgggaaagcctgcctatataggacataa Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcattgtcagtgtatttgtgtgcttcattaccctcctctttgtcttgaagAGCGCCTTGGTCCTCCATGTGATGTCACAGCAGCCTGTAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGATTATCAGTTTGAGGTTCAGTGGCAGgtgagttgaggcctcaattttctgggaaagcctgcctatataggacataa Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcattgtcagtgtatttgtgtgcttcattaccctcctctttgtcttgaagAGCGCCTTGGTCCTCCATGTGATGTCACAGCAGCCTGTAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGATTATCAGTTTGAGGTTCAGTGGCAGgtgagttgaggcctcaattttctgggaaagcctgcctatataggacataa Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcattgtcagtgtatttgtgtgcttcattaccctcctctttgtcttgaagAGCGCCTTGGTCCTCCATGTGATGTCACAGCAGCCTGTAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGATTATCAGTTTGAGGTTCAGTGGCAGgtgagttgaggcctcaattttctgggaaagcctgcctatataggacataa Alignment from Exonerate_coding2genome tcattgtcagtgtatttgtgtgcttcattaccctcctctttgtcttgaagagcgccttggtcctccatgtgatgtcacagcagcctgtaattcttcccattgcactgtgtcttgggctccaccttccacttgggcatctctggcagcacgggattatcagtttgaggttcagtggcaggtgagttgaggcctcaattttctgggaaagcctgcctatataggacataa Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tcattgtcagtgtatttgtgtgcttcattaccctcctctttgtcttgaagAGCGCCTTGGTCCTCCATGTGATGTCACAGCAGCCTGTAATTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCTCTGGCAGCACGGGATTATCAGTTTGAGGTTCAGTGGCAGgtgagttgaggcctcaattttctgggaaagcctgcctatataggacataa #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcaggcACTGCAGGCACTGGGGCGGAGAACCTAATCTGTGAGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAacgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcaggcACTGCAGGCACTGGGGCGGAGAACCTAATCTGTGAGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAacgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTAATCTGTGAGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTAATCTGTGAGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTAATCTGTGAGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTAATCTGTGAGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from Exonerate_coding2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTAATCTGTGAGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgatagaggtagtgttgaattgcagccatttcactttgtccctttctcagGCACTGCAGGCACTGGGGCGGAGAACCTAATCTGTGAGATTCGAGCTTCACGCTTTCTTTCCTGTGCTTGGCGAGAGGGGCCAGCTGCCCCTGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtactttgtaaacacccaggtgtctgtctgcagcacattgccactatctt #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACACTTGCTCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTggtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgat Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACACTTGCTCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTggtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgaa Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACACTTGCTCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgat Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACACTTGCTCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgat Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACACTTGCTCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgat Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACACTTGCTCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgat Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACACTTGCTCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgat Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG caaggtgcatcacatttgtgccccaatactttcaacttttgtatctctagCTTTGCAGCTTTGAAGCCCTCAAAGCACTTAAGGAACACTTGCTCCTCACGAGGGACTGCAGCTCTGTGAATGCCCAGATGACTGgtgagggattgctcaagcagataggctaaggcttgactgcagaaagtgat #### Ctsf_ID677_5 --> 0 - 1 Original Alignment GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAg ctagcataccatgtgtatcaggtcagattgacagcctctacacttcccagGACTTCTCTATAAAAATGACTCCACTCTTCAAAGACTTCATAACTACCTATAACCGCGCTTATGAGTCTAGAGAAggtagctctgataagtcttgatagctcaaaaggtaagtcttgacagctcaa Alignment from CESAR GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAg ctagcataccatgtgtatcaggtcagattgacagcctctacacttcccagGACTTCTCTATAAAAATGACTCCACTCTTCAAAGACTTCATAACTACCTATAACCGCGCTTATGAGTCTAGAGAAggtagctctgataagtcttgatagctcaaaaggtaagtcttgacagctcaa Alignment from Spaln_aa2Genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ctagcataccatgtgtatcaggtcagattgacagcctctacacttcccagGACTTCTCTATAAAAATGACTCCACTCTTCAAAGACTTCATAACTACCTATAACCGCGCTTATGAGTCTAGAGAAGgtagctctgataagtcttgatagctcaaaaggtaagtcttgacagctcaa Alignment from Spaln_nt2Genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ctagcataccatgtgtatcaggtcagattgacagcctctacacttcccagGACTTCTCTATAAAAATGACTCCACTCTTCAAAGACTTCATAACTACCTATAACCGCGCTTATGAGTCTAGAGAAGgtagctctgataagtcttgatagctcaaaaggtaagtcttgacagctcaa Alignment from Pairagon GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ctagcataccatgtgtatcaggtcagattgacagcctctacacttcccagGACTTCTCTATAAAAATGACTCCACTCTTCAAAGACTTCATAACTACCTATAACCGCGCTTATGAGTCTAGAGAAGgtagctctgataagtcttgatagctcaaaaggtaagtcttgacagctcaa Alignment from Exonerate_protein2genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ctagcataccatgtgtatcaggtcagattgacagcctctacacttcccagGACTTCTCTATAAAAATGACTCCACTCTTCAAAGACTTCATAACTACCTATAACCGCGCTTATGAGTCTAGAGAAGgtagctctgataagtcttgatagctcaaaaggtaagtcttgacagctcaa Alignment from Exonerate_coding2genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ctagcataccatgtgtatcaggtcagattgacagcctctacacttcccagGACTTCTCTATAAAAATGACTCCACTCTTCAAAGACTTCATAACTACCTATAACCGCGCTTATGAGTCTAGAGAAGgtagctctgataagtcttgatagctcaaaaggtaagtcttgacagctcaa Alignment from GeneWise GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ctagcataccatgtgtatcaggtcagattgacagcctctacacttcccagGACTTCTCTATAAAAATGACTCCACTCTTCAAAGACTTCATAACTACCTATAACCGCGCTTATGAGTCTAGAGAAGgtagctctgataagtcttgatagctcaaaaggtaagtcttgacagctcaa #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcctaggaacccattagggggctctgctttatcacctgaaccttccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGCGAGGGCCAGTGG---TTGATTCAAGGAACTCTTCTATCA---TCAGAACAGggtgagtatatgagccactctggatatatcaggcaaactcctcaatagggt Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcctaggaacccattagggggctctgctttatcacctgaaccttccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGCGAGGGCCAGTGG---TTGATTCAAGGAACTCTTCTATCA---TCAGAACAGggtgagtatatgagccactctggatatatcaggcaaactcctcaatagggt Alignment from Spaln_aa2Genome ---GGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcctaggaacccattagggggctctgctttatcacctgaaccttccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGCGAGGGCCAGTGGTTGATT---CAAGGAACTCTTCTATCA---TCAGAACAGGgtgagtatatgagccactctggatatatcaggcaaactcctcaatagggt Alignment from Spaln_nt2Genome GGCA---TGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcctaggaacccattagggggctctgctttatcacctgaaccttccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGCGAGGGCCAGTGGT---TGATTCAAGGAACTCTTCTATC---ATCAGAACAGGgtgagtatatgagccactctggatatatcaggcaaactcctcaatagggt Alignment from Pairagon ----------------------------------------------CCAGGGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTG---------------------TCAGAGCAGG CCTCCTAGGAACCCATTAGGGGGCTCTGCTTTATCACCTGAACCTTCCAGAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGCGAGGGCCAGTGGT---------------------------TGATTCAAGGAACTCTTCTATCATCAGAACAGGgtgagtatatgagccactctggatatatcaggcaaactcctcaatagggt Alignment from Exonerate_protein2genome CAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcctaggaacccattagggggctctgctttatcacctgaaccttccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGCGAGGGCCAGTGGTTGATT---CAAGGAACTCTTCTATCA---TCAGAACAGGgtgagtatatgagccactctggatatatcaggcaaactcctcaatagggt Alignment from Exonerate_coding2genome CAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcctaggaacccattagggggctctgctttatcacctgaaccttccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGCGAGGGCCAGTGGTTGATT---CAAGGAACTCTTCTATCA---TCAGAACAGGgtgagtatatgagccactctggatatatcaggcaaactcctcaatagggt Alignment from GeneWise ---GGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcctaggaacccattagggggctctgctttatcacctgaaccttccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGCGAGGGCCAGTGGTTGATT---CAAGGAACTCTTCTATCA---TCAGAACAGGgtgagtatatgagccactctggatatatcaggcaaactcctcaatagggt #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc caccataattttgttcctgcaggtttcagatgtgtctgattctttggcagTTCTACCATCATGGAATTGCCCATACATCCCAGCCCATATGCAGTCCTTGGCTTATTGATCATGCAGTGGTGCTTGTAGGCCATAGTAACcgtgagttatgttatctgctccttccatggtatgcagttcaataacaatcc Alignment from CESAR TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc caccataattttgttcctgcaggtttcagatgtgtctgattctttggcagTTCTACCATCATGGAATTGCCCATACATCCCAGCCCATATGCAGTCCTTGGCTTATTGATCATGCAGTGGTGCTTGTAGGCCATAGTAACcgtgagttatgttatctgctccttccatggtatgcagttcaataacaatcc Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caccataattttgttcctgcaggtttcagatgtgtctgattctttggcagTTCTACCATCATGGAATTGCCCATACATCCCAGCCCATATGCAGTCCTTGGCTTATTGATCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtgagttatgttatctgctccttccatggtatgcagttcaataacaatcc Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caccataattttgttcctgcaggtttcagatgtgtctgattctttggcagTTCTACCATCATGGAATTGCCCATACATCCCAGCCCATATGCAGTCCTTGGCTTATTGATCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtgagttatgttatctgctccttccatggtatgcagttcaataacaatcc Alignment from Pairagon TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caccataattttgttcctgcaggtttcagatgtgtctgattctttggcagTTCTACCATCATGGAATTGCCCATACATCCCAGCCCATATGCAGTCCTTGGCTTATTGATCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtgagttatgttatctgctccttccatggtatgcagttcaataacaatcc Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caccataattttgttcctgcaggtttcagatgtgtctgattctttggcagTTCTACCATCATGGAATTGCCCATACATCCCAGCCCATATGCAGTCCTTGGCTTATTGATCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtgagttatgttatctgctccttccatggtatgcagttcaataacaatcc Alignment from Exonerate_coding2genome caccataattttgttcctgcaggtttcagatgtgtctgattctttggcagttctaccatcatggaattgcccatacatcccagcccatatgcagtccttggcttattgatcatgcagtggtgcttgtaggccatagtaaccgtgagttatgttatctgctccttccatggtatgcagttcaataacaatcc Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caccataattttgttcctgcaggtttcagatgtgtctgattctttggcagTTCTACCATCATGGAATTGCCCATACATCCCAGCCCATATGCAGTCCTTGGCTTATTGATCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtgagttatgttatctgctccttccatggtatgcagttcaataacaatcc #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tctactggctcttatctaactcaaatgactccccatcctttgtttcccagagTACACTCATCATCTGAGCATCTTTGCCCACAATCTAGCTCAGGCACAGAGGCTCCAGCAGGAAGATTTGGGTACTGCCGAGCTTGGCGAGACACCTTTCAGTGACTTCAACagtgagcgggtttgtgtggcaagatgccctcttcattatctgtgtgttcac Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tctactggctcttatctaactcaaatgactccccatcctttgtttcccagagTACACTCATCATCTGAGCATCTTTGCCCACAATCTAGCTCAGGCACAGAGGCTCCAGCAGGAAGATTTGGGTACTGCCGAGCTTGGCGAGACACCTTTCAGTGACTTCAACagtgagcgggtttgtgtggcaagatgccctcttcattatctgtgtgttcac Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctaactcaaatgactccccatcctttgtttcccagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCTAGCTCAGGCACAGAGGCTCCAGCAGGAAGATTTGGGTACTGCCGAGCTTGGCGAGACACCTTTCAGTGACTTCAACAgtgagcgggtttgtgtggcaagatgccctcttcattatctgtgtgttcac Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctaactcaaatgactccccatcctttgtttcccagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCTAGCTCAGGCACAGAGGCTCCAGCAGGAAGATTTGGGTACTGCCGAGCTTGGCGAGACACCTTTCAGTGACTTCAACAgtgagcgggtttgtgtggcaagatgccctcttcattatctgtgtgttcac Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctaactcaaatgactccccatcctttgtttcccagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCTAGCTCAGGCACAGAGGCTCCAGCAGGAAGATTTGGGTACTGCCGAGCTTGGCGAGACACCTTTCAGTGACTTCAACAgtgagcgggtttgtgtggcaagatgccctcttcattatctgtgtgttcac Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctaactcaaatgactccccatcctttgtttcccagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCTAGCTCAGGCACAGAGGCTCCAGCAGGAAGATTTGGGTACTGCCGAGCTTGGCGAGACACCTTTCAGTGACTTCAACAgtgagcgggtttgtgtggcaagatgccctcttcattatctgtgtgttcac Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctaactcaaatgactccccatcctttgtttcccagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCTAGCTCAGGCACAGAGGCTCCAGCAGGAAGATTTGGGTACTGCCGAGCTTGGCGAGACACCTTTCAGTGACTTCAACAgtgagcgggtttgtgtggcaagatgccctcttcattatctgtgtgttcac Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactggctcttatctaactcaaatgactccccatcctttgtttcccagAGTACACTCATCATCTGAGCATCTTTGCCCACAATCTAGCTCAGGCACAGAGGCTCCAGCAGGAAGATTTGGGTACTGCCGAGCTTGGCGAGACACCTTTCAGTGACTTCAACAgtgagcgggtttgtgtggcaagatgccctcttcattatctgtgtgttcac #### Cutc_ID8808_3 --> 2 - 1 Original Alignment gtGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGg aacacagatgcttgcaattgaaacattcctcacttcttctcctttcccaggtGCTGGTCGAATAGAACTGTGTCCTGGTCTATTGATAGGTGGAACAATGCCCAGTATGggtaagtactttgtgcatccaagaatcgctagttcttgcacatactacagg Alignment from CESAR gtGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGg aacacagatgcttgcaattgaaacattcctcacttcttctcctttcccaggtGCTGGTCGAATAGAACTGTGTCCTGGTCTATTGATAGGTGGAACAATGCCCAGTATGggtaagtactttgtgcatccaagaatcgctagttcttgcacatactacagg Alignment from Spaln_aa2Genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aacacagatgcttgcaattgaaacattcctcacttcttctcctttcccagGTGCTGGTCGAATAGAACTGTGTCCTGGTCTATTGATAGGTGGAACAATGCCCAGTATGGgtaagtactttgtgcatccaagaatcgctagttcttgcacatactacagg Alignment from Spaln_nt2Genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aacacagatgcttgcaattgaaacattcctcacttcttctcctttcccagGTGCTGGTCGAATAGAACTGTGTCCTGGTCTATTGATAGGTGGAACAATGCCCAGTATGGgtaagtactttgtgcatccaagaatcgctagttcttgcacatactacagg Alignment from Pairagon GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aacacagatgcttgcaattgaaacattcctcacttcttctcctttcccagGTGCTGGTCGAATAGAACTGTGTCCTGGTCTATTGATAGGTGGAACAATGCCCAGTATGGgtaagtactttgtgcatccaagaatcgctagttcttgcacatactacagg Alignment from Exonerate_protein2genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aacacagatgcttgcaattgaaacattcctcacttcttctcctttcccagGTGCTGGTCGAATAGAACTGTGTCCTGGTCTATTGATAGGTGGAACAATGCCCAGTATGGgtaagtactttgtgcatccaagaatcgctagttcttgcacatactacagg Alignment from Exonerate_coding2genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aacacagatgcttgcaattgaaacattcctcacttcttctcctttcccagGTGCTGGTCGAATAGAACTGTGTCCTGGTCTATTGATAGGTGGAACAATGCCCAGTATGGgtaagtactttgtgcatccaagaatcgctagttcttgcacatactacagg Alignment from GeneWise GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aacacagatgcttgcaattgaaacattcctcacttcttctcctttcccagGTGCTGGTCGAATAGAACTGTGTCCTGGTCTATTGATAGGTGGAACAATGCCCAGTATGGgtaagtactttgtgcatccaagaatcgctagttcttgcacatactacagg #### Cutc_ID8811_6 --> 2 - 0 Original Alignment ccTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttgaaattcctgttctgttgttataaaaataaaatgatgtttctttccagctTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTTCTCACCCTTGGATTCGAACGTGTTCTGACCAGTGGATGTGACAGCTCGGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcctatgcacctgttcaggctggggtatagtctaattgagaga Alignment from CESAR ccTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttgaaattcctgttctgttgttataaaaataaaatgatgtttctttccagctTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTTCTCACCCTTGGATTCGAACGTGTTCTGACCAGTGGATGTGACAGCTCGGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcctatgcacctgttcaggctggggtatagtctaattgagaga Alignment from Spaln_aa2Genome CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttgaaattcctgttctgttgttataaaaataaaatgatgtttctttccagCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTTCTCACCCTTGGATTCGAACGTGTTCTGACCAGTGGATGTGACAGCTCGGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcctatgcacctgttcaggctggggtatagtctaattgagaga Alignment from Spaln_nt2Genome CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttgaaattcctgttctgttgttataaaaataaaatgatgtttctttccagCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTTCTCACCCTTGGATTCGAACGTGTTCTGACCAGTGGATGTGACAGCTCGGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcctatgcacctgttcaggctggggtatagtctaattgagaga Alignment from Pairagon GCCGGTCACTTTCCACAGAGCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttgaaattcctgttctgttgttataaaaataaaatgatgtttctttccag--------------------CTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTTCTCACCCTTGGATTCGAACGTGTTCTGACCAGTGGATGTGACAGCTCGGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcctatgcacctgttcaggctggggtatagtctaattgagaga Alignment from Exonerate_protein2genome CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttgaaattcctgttctgttgttataaaaataaaatgatgtttctttccagCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTTCTCACCCTTGGATTCGAACGTGTTCTGACCAGTGGATGTGACAGCTCGGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcctatgcacctgttcaggctggggtatagtctaattgagaga Alignment from Exonerate_coding2genome CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAGCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttgaaattcctgttCTGTTGTTATAAAAATAAAATGATGTTTCTTTCCAGCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTTCTCACCCTTGGATTCGAACGTGTTCTGACCAGTGGATGTGACAGCTCGGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcctatgcacctgttcaggctggggtatagtctaattgagaga Alignment from GeneWise CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAA ttgaaattcctgttctgttgttataaaaataaaatgatgtttctttccagCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTTCTCACCCTTGGATTCGAACGTGTTCTGACCAGTGGATGTGACAGCTCGGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGGTAAgttgcctatgcacctgttcaggctggggtatagtctaattgagaga #### Cutc_ID8812_7 --> 0 - 1 Original Alignment GCAAAAGGCAGGATTGTGGTAATGCCAg ttcctggctcaaagttgtcacctcatatatactcctcttctctttcacagGCAAAAGGG---------------TCAggtatgtcctttaatatgccagaagagtgtatggagaacagttctattgtg Alignment from CESAR GCAAAAGGCAGGATTGTGGTAATGCCAg ttcctggctcaaagttgtcacctcatatatactcctcttctctttcacagGCAAAAGGG---------------TCAggtatgtcctttaatatgccagaagagtgtatggagaacagttctattgtg Alignment from Spaln_aa2Genome ttcctggctcaaagttgtcacctcatatatactcctcttctctttcacaggcaaaagggtcaggtatgtcctttaatatgccagaagagtgtatggagaacagttctattgtg Alignment from Spaln_nt2Genome GCAAAAGG--CAG ttcctggctcaaagttgtcacctcatatatactcctcttctctttcacagGCAAAAGGGTCAGgtatgtcctttaatatgccagaagagtgtatggagaacagttctattgtg Alignment from Pairagon GCAAAAGGCAGGATTGTGGTAATGCCAG ttcctggctcaaagttgtcacctcatatatactcctcttctctttcacagGCAAAAGG---------------GTCAGgtatgtcctttaatatgccagaagagtgtatggagaacagttctattgtg Alignment from Exonerate_protein2genome ttcctggctcaaagttgtcacctcatatatactcctcttctctttcacaggcaaaagggtcaggtatgtcctttaatatgccagaagagtgtatggagaacagttctattgtg Alignment from Exonerate_coding2genome ttcctggctcaaagttgtcacctcatatatactcctcttctctttcacaggcaaaagggtcaggtatgtcctttaatatgccagaagagtgtatggagaacagttctattgtg Alignment from GeneWise ttcctggctcaaagttgtcacctcatatatactcctcttctctttcacaggcaaaagggtcaggtatgtcctttaatatgccagaagagtgtatggagaacagttctattgtg #### Cwf19l1_ID8932_12 --> 0 - 0 Original Alignment GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG actgtacaacaaatagtgagtttatccataacttcttccttattttttagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtgagtatgggatgggaggggagggtcagttaatattccttgtgcaattg Alignment from CESAR GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG actgtacaacaaatagtgagtttatccataacttcttccttattttttagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtgagtatgggatgggaggggagggtcagttaatattccttgtgcaattg Alignment from Spaln_aa2Genome GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG actgtacaacaaatagtgagtttatccataacttcttccttattttttagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtgagtatgggatgggaggggagggtcagttaatattccttgtgcaattg Alignment from Spaln_nt2Genome GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG actgtacaacaaatagtgagtttatccataacttcttccttattttttagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtgagtatgggatgggaggggagggtcagttaatattccttgtgcaattg Alignment from Pairagon GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG actgtacaacaaatagtgagtttatccataacttcttccttattttttagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtgagtatgggatgggaggggagggtcagttaatattccttgtgcaattg Alignment from Exonerate_protein2genome GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG actgtacaacaaatagtgagtttatccataacttcttccttattttttagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtgagtatgggatgggaggggagggtcagttaatattccttgtgcaattg Alignment from Exonerate_coding2genome GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG actgtacaacaaatagtgagtttatccataacttcttccttattttttagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtgagtatgggatgggaggggagggtcagttaatattccttgtgcaattg Alignment from GeneWise GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG actgtacaacaaatagtgagtttatccataacttcttccttattttttagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtgagtatgggatgggaggggagggtcagttaatattccttgtgcaattg #### Cyb561a3_ID2891_3 --> 0 - 2 Original Alignment TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTtt cctccacacatggccctgttcaagagatgtcccctttccttgttctgcagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCTTGGGCATCCCAATGGTTACAAGGTCTTCTGAAGCCTCTGCACTTGCTTTTTGGGGTGTGCATTGTTTCTCTGTCCATCACTTCTGTAATTTCAGGTATTAATGACAAACTTTTCTTTGTTctgtgagttgcaatcgatagtagcaccagggatttagaagggggtaatgtct Alignment from CESAR TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTtt cctccacacatggccctgttcaagagatgtcccctttccttgttctgcagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCTTGGGCATCCCAATGGTTACAAGGTCTTCTGAAGCCTCTGCACTTGCTTTTTGGGGTGTGCATTGTTTCTCTGTCCATCACTTCTGTAATTTCAGGTATTAATGACAAACTTTTCTTTGTTctgtgagttgcaatcgatagtagcaccagggatttagaagggggtaatgtct Alignment from Spaln_aa2Genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT cctccacacatggccctgttcaagagatgtcccctttccttgttctgcagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCTTGGGCATCCCAATGGTTACAAGGTCTTCTGAAGCCTCTGCACTTGCTTTTTGGGGTGTGCATTGTTTCTCTGTCCATCACTTCTGTAATTTCAGGTATTAATGACAAACTTTTCTTTGTTCTgtgagttgcaatcgatagtagcaccagggatttagaagggggtaatgtct Alignment from Spaln_nt2Genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT cctccacacatggccctgttcaagagatgtcccctttccttgttctgcagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCTTGGGCATCCCAATGGTTACAAGGTCTTCTGAAGCCTCTGCACTTGCTTTTTGGGGTGTGCATTGTTTCTCTGTCCATCACTTCTGTAATTTCAGGTATTAATGACAAACTTTTCTTTGTTCTgtgagttgcaatcgatagtagcaccagggatttagaagggggtaatgtct Alignment from Pairagon TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT cctccacacatggccctgttcaagagatgtcccctttccttgttctgcagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCTTGGGCATCCCAATGGTTACAAGGTCTTCTGAAGCCTCTGCACTTGCTTTTTGGGGTGTGCATTGTTTCTCTGTCCATCACTTCTGTAATTTCAGGTATTAATGACAAACTTTTCTTTGTTCTgtgagttgcaatcgatagtagcaccagggatttagaagggggtaatgtct Alignment from Exonerate_protein2genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTTGAAAAATGCCACCAAGCCCTACTCCAG cctccacacatggccctgttcaagagatgtcccctttccttgttctgcagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCTTGGGCATCCCAATGGTTACAAGGTCTTCTGAAGCCTCTGCACTTGCTTTTTGGGGTGTGCATTGTTTCTCTGTCCATCACTTCTGTAATTTCAGGTATTAATGACAAACTTTTCTTTGTTCTGTGAGTTGCAATCGATAGTAGCACCAGggatttagaagggggtaatgtct Alignment from Exonerate_coding2genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTTGAAAAATGCCACCAAGCCCTACTCCAG cctccacacatggccctgttcaagagatgtcccctttccttgttctgcagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCTTGGGCATCCCAATGGTTACAAGGTCTTCTGAAGCCTCTGCACTTGCTTTTTGGGGTGTGCATTGTTTCTCTGTCCATCACTTCTGTAATTTCAGGTATTAATGACAAACTTTTCTTTGTTCTGTGAGTTGCAATCGATAGTAGCACCAGggatttagaagggggtaatgtct Alignment from GeneWise TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT cctccacacatggccctgttcaagagatgtcccctttccttgttctgcagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCTTGGGCATCCCAATGGTTACAAGGTCTTCTGAAGCCTCTGCACTTGCTTTTTGGGGTGTGCATTGTTTCTCTGTCCATCACTTCTGTAATTTCAGGTATTAATGACAAACTTTTCTTTGTTCTgtgagttgcaatcgatagtagcaccagggatttagaagggggtaatgtct #### Cyp26c1_ID7408_5 --> 0 - 0 Original Alignment GAGTTGGCTGTAGAGCTCCTCTTCGCGGCCTTTTTCACCACAGCCAGCGCCAGCACATCCCTCATCCTGCTGCTTCTGCAGCACCCAGCAGCCATCACCAAAATCCAGCAGGAGCTGTCAGCGCAGGGCCTGGGGCGCGCGTGCACTTGCACACCCAGAGCCTCAGGATCGCCACCGGACTGCGGTTGTGAGCCGGACCTTAGCCTGGCCATGCTGGGCCGTTTGCGCTACGTCGACTGCGTAGTCAAGGAGGTGCTGCGCCTCCTACCGCCGGTGTCCGGGGGCTACCGCACTGCGCTGCGCACCTTTGAACTGGAC gaaaaaatgctcatcataacgtagttattgtgtgttctcttcctgcccagGAATTGGCCGTAGAGCTCCTTTCTGCAGCCTTCTACACTACAGCCAGTGCCAGCACATCCCTCATTCTATTGCTCCTGCAACATCCAGCAGCTATCACTAGGATCCAGCAGGAGCTTTCAGCACAGGGCCTGGGACGGATGTGCACTTGTATGCCAAGAGCCTCAGGATCACCACCTGACTGTGGATGTGAGCCAGACCTTAGCCTCGCCATGCTGGGTCGTTTACGCTATTTTGACTGTGTAGTCAAGGAGGAACTACGTCTCTTATTACCAGTGTCAGGGGGATATCGTACTGCACTGCGTGCATTTGAACTAGATgtgagaactttggatgttgtgtttgtaaggagtggagcagtgtctatctt Alignment from CESAR GAGTTGGCTGTAGAGCTCCTCTTCGCGGCCTTTTTCACCACAGCCAGCGCCAGCACATCCCTCATCCTGCTGCTTCTGCAGCACCCAGCAGCCATCACCAAAATCCAGCAGGAGCTGTCAGCGCAGGGCCTGGGGCGCGCGTGCACTTGCACACCCAGAGCCTCAGGATCGCCACCGGACTGCGGTTGTGAGCCGGACCTTAGCCTGGCCATGCTGGGCCGTTTGCGCTACGTCGACTGCGTAGTCAAGGAGGTGCTGCGCCTCCTACCGCCGGTGTCCGGGGGCTACCGCACTGCGCTGCGCACCTTTGAACTGGAC gaaaaaatgctcatcataacgtagttattgtgtgttctcttcctgcccagGAATTGGCCGTAGAGCTCCTTTCTGCAGCCTTCTACACTACAGCCAGTGCCAGCACATCCCTCATTCTATTGCTCCTGCAACATCCAGCAGCTATCACTAGGATCCAGCAGGAGCTTTCAGCACAGGGCCTGGGACGGATGTGCACTTGTATGCCAAGAGCCTCAGGATCACCACCTGACTGTGGATGTGAGCCAGACCTTAGCCTCGCCATGCTGGGTCGTTTACGCTATTTTGACTGTGTAGTCAAGGAGGAACTACGTCTCTTATTACCAGTGTCAGGGGGATATCGTACTGCACTGCGTGCATTTGAACTAGATgtgagaactttggatgttgtgtttgtaaggagtggagcagtgtctatctt Alignment from Spaln_aa2Genome GAGTTGGCTGTAGAGCTCCTCTTCGCGGCCTTTTTCACCACAGCCAGCGCCAGCACATCCCTCATCCTGCTGCTTCTGCAGCACCCAGCAGCCATCACCAAAATCCAGCAGGAGCTGTCAGCGCAGGGCCTGGGGCGCGCGTGCACTTGCACACCCAGAGCCTCAGGATCGCCACCGGACTGCGGTTGTGAGCCGGACCTTAGCCTGGCCATGCTGGGCCGTTTGCGCTACGTCGACTGCGTAGTCAAGGAGGTGCTGCGCCTCCTACCGCCGGTGTCCGGGGGCTACCGCACTGCGCTGCGCACCTTTGAACTGGAC gaaaaaatgctcatcataacgtagttattgtgtgttctcttcctgcccagGAATTGGCCGTAGAGCTCCTTTCTGCAGCCTTCTACACTACAGCCAGTGCCAGCACATCCCTCATTCTATTGCTCCTGCAACATCCAGCAGCTATCACTAGGATCCAGCAGGAGCTTTCAGCACAGGGCCTGGGACGGATGTGCACTTGTATGCCAAGAGCCTCAGGATCACCACCTGACTGTGGATGTGAGCCAGACCTTAGCCTCGCCATGCTGGGTCGTTTACGCTATTTTGACTGTGTAGTCAAGGAGGAACTACGTCTCTTATTACCAGTGTCAGGGGGATATCGTACTGCACTGCGTGCATTTGAACTAGATgtgagaactttggatgttgtgtttgtaaggagtggagcagtgtctatctt Alignment from Spaln_nt2Genome GAGTTGGCTGTAGAGCTCCTCTTCGCGGCCTTTTTCACCACAGCCAGCGCCAGCACATCCCTCATCCTGCTGCTTCTGCAGCACCCAGCAGCCATCACCAAAATCCAGCAGGAGCTGTCAGCGCAGGGCCTGGGGCGCGCGTGCACTTGCACACCCAGAGCCTCAGGATCGCCACCGGACTGCGGTTGTGAGCCGGACCTTAGCCTGGCCATGCTGGGCCGTTTGCGCTACGTCGACTGCGTAGTCAAGGAGGTGCTGCGCCTCCTACCGCCGGTGTCCGGGGGCTACCGCACTGCGCTGCGCACCTTTGAACTGGAC gaaaaaatgctcatcataacgtagttattgtgtgttctcttcctgcccagGAATTGGCCGTAGAGCTCCTTTCTGCAGCCTTCTACACTACAGCCAGTGCCAGCACATCCCTCATTCTATTGCTCCTGCAACATCCAGCAGCTATCACTAGGATCCAGCAGGAGCTTTCAGCACAGGGCCTGGGACGGATGTGCACTTGTATGCCAAGAGCCTCAGGATCACCACCTGACTGTGGATGTGAGCCAGACCTTAGCCTCGCCATGCTGGGTCGTTTACGCTATTTTGACTGTGTAGTCAAGGAGGAACTACGTCTCTTATTACCAGTGTCAGGGGGATATCGTACTGCACTGCGTGCATTTGAACTAGATgtgagaactttggatgttgtgtttgtaaggagtggagcagtgtctatctt Alignment from Pairagon GAGTTGGCTGTAGAGCTCCTCTTCGCGGCCTTTTTCACCACAGCCAGCGCCAGCACATCCCTCATCCTGCTGCTTCTGCAGCACCCAGCAGCCATCACCAAAATCCAGCAGGAGCTGTCAGCGCAGGGCCTGGGGCGCGCGTGCACTTGCACACCCAGAGCCTCAGGATCGCCACCGGACTGCGGTTGTGAGCCGGACCTTAGCCTGGCCATGCTGGGCCGTTTGCGCTACGTCGACTGCGTAGTCAAGGAGGTGCTGCGCCTCCTACCGCCGGTGTCCGGGGGCTACCGCACTGCGCTGCGCACCTTTGAACTGGAC gaaaaaatgctcatcataacgtagttattgtgtgttctcttcctgcccagGAATTGGCCGTAGAGCTCCTTTCTGCAGCCTTCTACACTACAGCCAGTGCCAGCACATCCCTCATTCTATTGCTCCTGCAACATCCAGCAGCTATCACTAGGATCCAGCAGGAGCTTTCAGCACAGGGCCTGGGACGGATGTGCACTTGTATGCCAAGAGCCTCAGGATCACCACCTGACTGTGGATGTGAGCCAGACCTTAGCCTCGCCATGCTGGGTCGTTTACGCTATTTTGACTGTGTAGTCAAGGAGGAACTACGTCTCTTATTACCAGTGTCAGGGGGATATCGTACTGCACTGCGTGCATTTGAACTAGATgtgagaactttggatgttgtgtttgtaaggagtggagcagtgtctatctt Alignment from Exonerate_protein2genome GAGTTGGCTGTAGAGCTCCTCTTCGCGGCCTTTTTCACCACAGCCAGCGCCAGCACATCCCTCATCCTGCTGCTTCTGCAGCACCCAGCAGCCATCACCAAAATCCAGCAGGAGCTGTCAGCGCAGGGCCTGGGGCGCGCGTGCACTTGCACACCCAGAGCCTCAGGATCGCCACCGGACTGCGGTTGTGAGCCGGACCTTAGCCTGGCCATGCTGGGCCGTTTGCGCTACGTCGACTGCGTAGTCAAGGAGGTGCTGCGCCTCCTACCGCCGGTGTCCGGGGGCTACCGCACTGCGCTGCGCACCTTTGAACTGGAC gaaaaaatgctcatcataacgtagttattgtgtgttctcttcctgcccagGAATTGGCCGTAGAGCTCCTTTCTGCAGCCTTCTACACTACAGCCAGTGCCAGCACATCCCTCATTCTATTGCTCCTGCAACATCCAGCAGCTATCACTAGGATCCAGCAGGAGCTTTCAGCACAGGGCCTGGGACGGATGTGCACTTGTATGCCAAGAGCCTCAGGATCACCACCTGACTGTGGATGTGAGCCAGACCTTAGCCTCGCCATGCTGGGTCGTTTACGCTATTTTGACTGTGTAGTCAAGGAGGAACTACGTCTCTTATTACCAGTGTCAGGGGGATATCGTACTGCACTGCGTGCATTTGAACTAGATgtgagaactttggatgttgtgtttgtaaggagtggagcagtgtctatctt Alignment from Exonerate_coding2genome GAGTTGGCTGTAGAGCTCCTCTTCGCGGCCTTTTTCACCACAGCCAGCGCCAGCACATCCCTCATCCTGCTGCTTCTGCAGCACCCAGCAGCCATCACCAAAATCCAGCAGGAGCTGTCAGCGCAGGGCCTGGGGCGCGCGTGCACTTGCACACCCAGAGCCTCAGGATCGCCACCGGACTGCGGTTGTGAGCCGGACCTTAGCCTGGCCATGCTGGGCCGTTTGCGCTACGTCGACTGCGTAGTCAAGGAGGTGCTGCGCCTCCTACCGCCGGTGTCCGGGGGCTACCGCACTGCGCTGCGCACCTTTGAACTGGAC gaaaaaatgctcatcataacgtagttattgtgtgttctcttcctgcccagGAATTGGCCGTAGAGCTCCTTTCTGCAGCCTTCTACACTACAGCCAGTGCCAGCACATCCCTCATTCTATTGCTCCTGCAACATCCAGCAGCTATCACTAGGATCCAGCAGGAGCTTTCAGCACAGGGCCTGGGACGGATGTGCACTTGTATGCCAAGAGCCTCAGGATCACCACCTGACTGTGGATGTGAGCCAGACCTTAGCCTCGCCATGCTGGGTCGTTTACGCTATTTTGACTGTGTAGTCAAGGAGGAACTACGTCTCTTATTACCAGTGTCAGGGGGATATCGTACTGCACTGCGTGCATTTGAACTAGATgtgagaactttggatgttgtgtttgtaaggagtggagcagtgtctatctt Alignment from GeneWise GAGTTGGCTGTAGAGCTCCTCTTCGCGGCCTTTTTCACCACAGCCAGCGCCAGCACATCCCTCATCCTGCTGCTTCTGCAGCACCCAGCAGCCATCACCAAAATCCAGCAGGAGCTGTCAGCGCAGGGCCTGGGGCGCGCGTGCACTTGCACACCCAGAGCCTCAGGATCGCCACCGGACTGCGGTTGTGAGCCGGACCTTAGCCTGGCCATGCTGGGCCGTTTGCGCTACGTCGACTGCGTAGTCAAGGAGGTGCTGCGCCTCCTACCGCCGGTGTCCGGGGGCTACCGCACTGCGCTGCGCACCTTTGAACTGGAC gaaaaaatgctcatcataacgtagttattgtgtgttctcttcctgcccagGAATTGGCCGTAGAGCTCCTTTCTGCAGCCTTCTACACTACAGCCAGTGCCAGCACATCCCTCATTCTATTGCTCCTGCAACATCCAGCAGCTATCACTAGGATCCAGCAGGAGCTTTCAGCACAGGGCCTGGGACGGATGTGCACTTGTATGCCAAGAGCCTCAGGATCACCACCTGACTGTGGATGTGAGCCAGACCTTAGCCTCGCCATGCTGGGTCGTTTACGCTATTTTGACTGTGTAGTCAAGGAGGAACTACGTCTCTTATTACCAGTGTCAGGGGGATATCGTACTGCACTGCGTGCATTTGAACTAGATgtgagaactttggatgttgtgtttgtaaggagtggagcagtgtctatctt #### Cyp2c29_ID7762_5 --> 0 - 0 Original Alignment GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCAT---CACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctccttggatttaacaccctgcctgtgtgtctggagttttcttctttcagGTGTGCAATAGCTTCCCAACACTTATAGACTATTGTCCAGGAAGTCATCACCACAAAGTGGTCAAAAACTTCAATTATCTGCAAAGCTATTTGTTAGAGAAAATAAAAGAACACAAAGAATTACTAGATGTGACAAAT------GACTTTCTCGATTATTACCTAATCAAGCAAAAACATgtgagtgggtaaatatattgtacattataaaagggtgtttcactttgccg Alignment from CESAR GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCAT---CACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctccttggatttaacaccctgcctgtgtgtctggagttttcttctttcagGTGTGCAATAGCTTCCCAACACTTATAGACTATTGTCCAGGAAGTCATCACCACAAAGTGGTCAAAAACTTCAATTATCTGCAAAGCTATTTGTTAGAGAAAATAAAAGAACACAAAGAATTACTAGATGTGACAAAT------GACTTTCTCGATTATTACCTAATCAAGCAAAAACATgtgagtgggtaaatatattgtacattataaaagggtgtttcactttgccg Alignment from Spaln_aa2Genome GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGT---CATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctccttggatttaacaccctgcctgtgtgtctggagttttcttctttcagGTGTGCAATAGCTTCCCAACACTTATAGACTATTGTCCAGGAAGTCATCACCACAAAGTGGTCAAAAACTTCAATTATCTGCAAAGCTATTTGTTAGAGAAAATAAAAGAACACAAAGAATTACTAGATGTGACAAAT------GACTTTCTCGATTATTACCTAATCAAGCAAAAACATgtgagtgggtaaatatattgtacattataaaagggtgtttcactttgccg Alignment from Spaln_nt2Genome GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCAT---CACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctccttggatttaacaccctgcctgtgtgtctggagttttcttctttcagGTGTGCAATAGCTTCCCAACACTTATAGACTATTGTCCAGGAAGTCATCACCACAAAGTGGTCAAAAACTTCAATTATCTGCAAAGCTATTTGTTAGAGAAAATAAAAGAACACAAAGAATTACTAGATGTGACAAA------TGACTTTCTCGATTATTACCTAATCAAGCAAAAACATgtgagtgggtaaatatattgtacattataaaagggtgtttcactttgccg Alignment from Pairagon GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCAT---CACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctccttggatttaacaccctgcctgtgtgtctggagttttcttctttcagGTGTGCAATAGCTTCCCAACACTTATAGACTATTGTCCAGGAAGTCATCACCACAAAGTGGTCAAAAACTTCAATTATCTGCAAAGCTATTTGTTAGAGAAAATAAAAGAACACAAAGAATTACTAGATGTGACAAA------TGACTTTCTCGATTATTACCTAATCAAGCAAAAACATgtgagtgggtaaatatattgtacattataaaagggtgtttcactttgccg Alignment from Exonerate_protein2genome GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGT---CATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctccttggatttaacaccctgcctgtgtgtctggagttttcttctttcagGTGTGCAATAGCTTCCCAACACTTATAGACTATTGTCCAGGAAGTCATCACCACAAAGTGGTCAAAAACTTCAATTATCTGCAAAGCTATTTGTTAGAGAAAATAAAAGAACACAAAGAATTACTAGATGTGACAAAT------GACTTTCTCGATTATTACCTAATCAAGCAAAAACATgtgagtgggtaaatatattgtacattataaaagggtgtttcactttgccg Alignment from Exonerate_coding2genome GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGT---CATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctccttggatttaacaccctgcctgtgtgtctggagttttcttctttcagGTGTGCAATAGCTTCCCAACACTTATAGACTATTGTCCAGGAAGTCATCACCACAAAGTGGTCAAAAACTTCAATTATCTGCAAAGCTATTTGTTAGAGAAAATAAAAGAACACAAAGAATTACTAGATGTGACAAAT------GACTTTCTCGATTATTACCTAATCAAGCAAAAACATgtgagtgggtaaatatattgtacattataaaagggtgtttcactttgccg Alignment from GeneWise GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGT---CATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctccttggatttaacaccctgcctgtgtgtctggagttttcttctttcagGTGTGCAATAGCTTCCCAACACTTATAGACTATTGTCCAGGAAGTCATCACCACAAAGTGGTCAAAAACTTCAATTATCTGCAAAGCTATTTGTTAGAGAAAATAAAAGAACACAAAGAATTACTAGATGTGACAAAT------GACTTTCTCGATTATTACCTAATCAAGCAAAAACATgtgagtgggtaaatatattgtacattataaaagggtgtttcactttgccg #### Cyp2c29_ID7764_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG gttcaccttctctacctctggataggttattcttggtctattctttgtagctCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGATAAGAGTCACATGCCTTTCACAGATGCCACACTTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCTACCAGTCTACCCCATGCTGTAACATGTGACATTAAATTTAGGAAATATCTTATCCCCAAAgttggtctgtcatctcacagagcatttcactgcctctagcctcatatggt Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG gttcaccttctctacctctggataggttattcttggtctattctttgtagctCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGATAAGAGTCACATGCCTTTCACAGATGCCACACTTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCTACCAGTCTACCCCATGCTGTAACATGTGACATTAAATTTAGGAAATATCTTATCCCCAAAgttggtctgtcatctcacagagcatttcactgcctctagcctcatatggt Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG gttcaccttctctacctctggataggttattcttggtctattctttgtagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGATAAGAGTCACATGCCTTTCACAGATGCCACACTTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCTACCAGTCTACCCCATGCTGTAACATGTGACATTAAATTTAGGAAATATCTTATCCCCAAAgttggtctgtcatctcacagagcatttcactgcctctagcctcatatggt Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG gttcaccttctctacctctggataggttattcttggtctattctttgtagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGATAAGAGTCACATGCCTTTCACAGATGCCACACTTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCTACCAGTCTACCCCATGCTGTAACATGTGACATTAAATTTAGGAAATATCTTATCCCCAAAgttggtctgtcatctcacagagcatttcactgcctctagcctcatatggt Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG gttcaccttctctacctctggataggttattcttggtctattctttgtagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGATAAGAGTCACATGCCTTTCACAGATGCCACACTTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCTACCAGTCTACCCCATGCTGTAACATGTGACATTAAATTTAGGAAATATCTTATCCCCAAAgttggtctgtcatctcacagagcatttcactgcctctagcctcatatggt Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG gttcaccttctctacctctggataggttattcttggtctattctttgtagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGATAAGAGTCACATGCCTTTCACAGATGCCACACTTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCTACCAGTCTACCCCATGCTGTAACATGTGACATTAAATTTAGGAAATATCTTATCCCCAAAgttggtctgtcatctcacagagcatttcactgcctctagcctcatatggt Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG gttcaccttctctacctctggataggttattcttggtctattctttgtagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGATAAGAGTCACATGCCTTTCACAGATGCCACACTTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCTACCAGTCTACCCCATGCTGTAACATGTGACATTAAATTTAGGAAATATCTTATCCCCAAAgttggtctgtcatctcacagagcatttcactgcctctagcctcatatggt Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG gttcaccttctctacctctggataggttattcttggtctattctttgtagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGATAAGAGTCACATGCCTTTCACAGATGCCACACTTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCTACCAGTCTACCCCATGCTGTAACATGTGACATTAAATTTAGGAAATATCTTATCCCCAAAgttggtctgtcatctcacagagcatttcactgcctctagcctcatatggt #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agcagagcatgaaattttcaagctgcaccttgtggctttatttcttataggaCTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCATAATTTAGGTATGAGGAAAAGGAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACCAATtgtgtgctaggtctataggagaagcagttgtcacaagttttacgatgaagg Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agcagagcatgaaattttcaagctgcaccttgtggctttatttcttataggaCTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCATAATTTAGGTATGAGGAAAAGGAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACCAATtgtgtgctaggtctataggagaagcagttgtcacaagttttacgatgaagg Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcagagcatgaaattttcaagctgcaccttgtggctttatttcttatagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCATAATTTAGGTATGAGGAAAAGGAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACCAATTgtgtgctaggtctataggagaagcagttgtcacaagttttacgatgaagg Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcagagcatgaaattttcaagctgcaccttgtggctttatttcttatagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCATAATTTAGGTATGAGGAAAAGGAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACCAATTgtgtgctaggtctataggagaagcagttgtcacaagttttacgatgaagg Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcagagcatgaaattttcaagctgcaccttgtggctttatttcttatagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCATAATTTAGGTATGAGGAAAAGGAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACCAATTgtgtgctaggtctataggagaagcagttgtcacaagttttacgatgaagg Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcagagcatgaaattttcaagctgcaccttgtggctttatttcttatagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCATAATTTAGGTATGAGGAAAAGGAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACCAATTgtgtgctaggtctataggagaagcagttgtcacaagttttacgatgaagg Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcagagcatgaaattttcaagctgcaccttgtggctttatttcttatagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCATAATTTAGGTATGAGGAAAAGGAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACCAATTgtgtgctaggtctataggagaagcagttgtcacaagttttacgatgaagg Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agcagagcatgaaattttcaagctgcaccttgtggctttatttcttatagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCATAATTTAGGTATGAGGAAAAGGAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACCAATTgtgtgctaggtctataggagaagcagttgtcacaagttttacgatgaagg #### Cyp2c37_ID7842_5 --> 0 - 0 Original Alignment ATTTGCAATACATATCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAAACAATTTTTTAAAAATTATGCTTCTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGTGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG taagtctcttagaatataacatgcattgcacgcctctccctgcctttcagGTTTGCAATACATATCCAACTCTCCTTGATTACTGTCCAGGAAGTGATAAACATTTTTTTAAGAATTATGCTTCAACTAAGAATTTTCTCTTAAAAAAAATCAAAGAACGTGAAGAATCATTGGACGTTACCATTCCTCGGGACTATATTGATTATTTCCTAATTAATGGAGGCCAGgtactgaatccctggaaatgcaaacaaaagccaagctgcttttgatttgc Alignment from CESAR ATTTGCAATACATATCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAAACAATTTTTTAAAAATTATGCTTCTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGTGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG taagtctcttagaatataacatgcattgcacgcctctccctgcctttcagGTTTGCAATACATATCCAACTCTCCTTGATTACTGTCCAGGAAGTGATAAACATTTTTTTAAGAATTATGCTTCAACTAAGAATTTTCTCTTAAAAAAAATCAAAGAACGTGAAGAATCATTGGACGTTACCATTCCTCGGGACTATATTGATTATTTCCTAATTAATGGAGGCCAGgtactgaatccctggaaatgcaaacaaaagccaagctgcttttgatttgc Alignment from Spaln_aa2Genome ATTTGCAATACATATCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAAACAATTTTTTAAAAATTATGCTTCTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGTGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG taagtctcttagaatataacatgcattgcacgcctctccctgcctttcagGTTTGCAATACATATCCAACTCTCCTTGATTACTGTCCAGGAAGTGATAAACATTTTTTTAAGAATTATGCTTCAACTAAGAATTTTCTCTTAAAAAAAATCAAAGAACGTGAAGAATCATTGGACGTTACCATTCCTCGGGACTATATTGATTATTTCCTAATTAATGGAGGCCAGgtactgaatccctggaaatgcaaacaaaagccaagctgcttttgatttgc Alignment from Spaln_nt2Genome ATTTGCAATACATATCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAAACAATTTTTTAAAAATTATGCTTCTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGTGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG taagtctcttagaatataacatgcattgcacgcctctccctgcctttcagGTTTGCAATACATATCCAACTCTCCTTGATTACTGTCCAGGAAGTGATAAACATTTTTTTAAGAATTATGCTTCAACTAAGAATTTTCTCTTAAAAAAAATCAAAGAACGTGAAGAATCATTGGACGTTACCATTCCTCGGGACTATATTGATTATTTCCTAATTAATGGAGGCCAGgtactgaatccctggaaatgcaaacaaaagccaagctgcttttgatttgc Alignment from Pairagon ATTTGCAATACATATCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAAACAATTTTTTAAAAATTATGCTTCTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGTGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG taagtctcttagaatataacatgcattgcacgcctctccctgcctttcagGTTTGCAATACATATCCAACTCTCCTTGATTACTGTCCAGGAAGTGATAAACATTTTTTTAAGAATTATGCTTCAACTAAGAATTTTCTCTTAAAAAAAATCAAAGAACGTGAAGAATCATTGGACGTTACCATTCCTCGGGACTATATTGATTATTTCCTAATTAATGGAGGCCAGgtactgaatccctggaaatgcaaacaaaagccaagctgcttttgatttgc Alignment from Exonerate_protein2genome ATTTGCAATACATATCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAAACAATTTTTTAAAAATTATGCTTCTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGTGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG taagtctcttagaatataacatgcattgcacgcctctccctgcctttcagGTTTGCAATACATATCCAACTCTCCTTGATTACTGTCCAGGAAGTGATAAACATTTTTTTAAGAATTATGCTTCAACTAAGAATTTTCTCTTAAAAAAAATCAAAGAACGTGAAGAATCATTGGACGTTACCATTCCTCGGGACTATATTGATTATTTCCTAATTAATGGAGGCCAGgtactgaatccctggaaatgcaaacaaaagccaagctgcttttgatttgc Alignment from Exonerate_coding2genome ATTTGCAATACATATCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAAACAATTTTTTAAAAATTATGCTTCTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGTGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG taagtctcttagaatataacatgcattgcacgcctctccctgcctttcagGTTTGCAATACATATCCAACTCTCCTTGATTACTGTCCAGGAAGTGATAAACATTTTTTTAAGAATTATGCTTCAACTAAGAATTTTCTCTTAAAAAAAATCAAAGAACGTGAAGAATCATTGGACGTTACCATTCCTCGGGACTATATTGATTATTTCCTAATTAATGGAGGCCAGgtactgaatccctggaaatgcaaacaaaagccaagctgcttttgatttgc Alignment from GeneWise ATTTGCAATACATATCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAAACAATTTTTTAAAAATTATGCTTCTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGTGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG taagtctcttagaatataacatgcattgcacgcctctccctgcctttcagGTTTGCAATACATATCCAACTCTCCTTGATTACTGTCCAGGAAGTGATAAACATTTTTTTAAGAATTATGCTTCAACTAAGAATTTTCTCTTAAAAAAAATCAAAGAACGTGAAGAATCATTGGACGTTACCATTCCTCGGGACTATATTGATTATTTCCTAATTAATGGAGGCCAGgtactgaatccctggaaatgcaaacaaaagccaagctgcttttgatttgc #### Cyp2c37_ID7844_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctcattcacttctctctagcagcctagcattgtcccctttcttccatcagcaATACTCCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGACATCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTCATTGAACCTATCCCTAACAGTGTTCCCTATATAGTGACAAGTGGAATTGAGTTTAGAAACTACTTCATCCCAGAGgtgagtcatgctcaatacagatgttgagattacattaaagatagggtcca Alignment from CESAR ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctcattcacttctctctagcagcctagcattgtcccctttcttccatcagcaATACTCCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGACATCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTCATTGAACCTATCCCTAACAGTGTTCCCTATATAGTGACAAGTGGAATTGAGTTTAGAAACTACTTCATCCCAGAGgtgagtcatgctcaatacagatgttgagattacattaaagatagggtcca Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctcattcacttctctctagcagcctagcattgtcccctttcttccatcagCAATACTCCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGACATCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTCATTGAACCTATCCCTAACAGTGTTCCCTATATAGTGACAAGTGGAATTGAGTTTAGAAACTACTTCATCCCAGAGgtgagtcatgctcaatacagatgttgagattacattaaagatagggtcca Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctcattcacttctctctagcagcctagcattgtcccctttcttccatcagCAATACTCCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGACATCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTCATTGAACCTATCCCTAACAGTGTTCCCTATATAGTGACAAGTGGAATTGAGTTTAGAAACTACTTCATCCCAGAGgtgagtcatgctcaatacagatgttgagattacattaaagatagggtcca Alignment from Pairagon CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctcattcacttctctctagcagcctagcattgtcccctttcttccatcagCAATACTCCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGACATCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTCATTGAACCTATCCCTAACAGTGTTCCCTATATAGTGACAAGTGGAATTGAGTTTAGAAACTACTTCATCCCAGAGgtgagtcatgctcaatacagatgttgagattacattaaagatagggtcca Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctcattcacttctctctagcagcctagcattgtcccctttcttccatcagCAATACTCCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGACATCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTCATTGAACCTATCCCTAACAGTGTTCCCTATATAGTGACAAGTGGAATTGAGTTTAGAAACTACTTCATCCCAGAGgtgagtcatgctcaatacagatgttgagattacattaaagatagggtcca Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctcattcacttctctctagcagcctagcattgtcccctttcttccatcagCAATACTCCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGACATCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTCATTGAACCTATCCCTAACAGTGTTCCCTATATAGTGACAAGTGGAATTGAGTTTAGAAACTACTTCATCCCAGAGgtgagtcatgctcaatacagatgttgagattacattaaagatagggtcca Alignment from GeneWise CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctcattcacttctctctagcagcctagcattgtcccctttcttccatcagCAATACTCCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGACATCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTCATTGAACCTATCCCTAACAGTGTTCCCTATATAGTGACAAGTGGAATTGAGTTTAGAAACTACTTCATCCCAGAGgtgagtcatgctcaatacagatgttgagattacattaaagatagggtcca #### Cyp2c38_ID7773_7 --> 2 - 0 Original Alignment ctAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG tcagtctcattgtatctgtttttcccaggatttcttcttttccctattagccAAAGTCCAAGAGGCTACAGACCATGTAGTTGGTAGACACTGCAGTCCTAGCATGCAGGACAGGAGT---------------CGGGCCATGATCCATGAGGTCCAAAGGTTAATTAATCTTGTCTCTGAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTGAAGAATTATATCATCCCCAAAgtaggagtggccccctgattgcatttagtgcagttgtaagccaggaaaac Alignment from CESAR ctAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG tcagtctcattgtatctgtttttcccaggatttcttcttttccctattagccAAAGTCCAAGAGGCTACAGACCATGTAGTTGGTAGACACTGCAGTCCTAGCATGCAGGACAGGAGTCGG---------------GCCATGATCCATGAGGTCCAAAGGTTAATTAATCTTGTCTCTGAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTGAAGAATTATATCATCCCCAAAgtaggagtggccccctgattgcatttagtgcagttgtaagccaggaaaac Alignment from Spaln_aa2Genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG tcagtctcattgtatctgtttttcccaggatttcttcttttccctattagCCAAAGTCCAAGAGGCTACAGACCATGTAGTTGGTAGACACTGCAGTCCTAGCATGCAGGACAGGAGTCGG---------------GCCATGATCCATGAGGTCCAAAGGTTAATTAATCTTGTCTCTGAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTGAAGAATTATATCATCCCCAAAgtaggagtggccccctgattgcatttagtgcagttgtaagccaggaaaac Alignment from Spaln_nt2Genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG tcagtctcattgtatctgtttttcccaggatttcttcttttccctattagCCAAAGTCCAAGAGGCTACAGACCATGTAGTTGGTAGACACTGCAGTCCTAGCATGCAGGACAGGAGTCG---------------GGCCATGATCCATGAGGTCCAAAGGTTAATTAATCTTGTCTCTGAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTGAAGAATTATATCATCCCCAAAgtaggagtggccccctgattgcatttagtgcagttgtaagccaggaaaac Alignment from Pairagon CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG tcagtctcattgtatctgtttttcccaggatttcttcttttccctattagCCAAAGTCCAAGAGGCTACAGACCATGTAGTTGGTAGACACTGCAGTCCTAGCATGCAGGACAGGAGTCGG---------------GCCATGATCCATGAGGTCCAAAGGTTAATTAATCTTGTCTCTGAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTGAAGAATTATATCATCCCCAAAgtaggagtggccccctgattgcatttagtgcagttgtaagccaggaaaac Alignment from Exonerate_protein2genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG tcagtctcattgtatctgtttttcccaggatttcttcttttccctattagCCAAAGTCCAAGAGGCTACAGACCATGTAGTTGGTAGACACTGCAGTCCTAGCATGCAGGACAGGAGTCGG---------------GCCATGATCCATGAGGTCCAAAGGTTAATTAATCTTGTCTCTGAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTGAAGAATTATATCATCCCCAAAgtaggagtggccccctgattgcatttagtgcagttgtaagccaggaaaac Alignment from Exonerate_coding2genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG tcagtctcattgtatctgtttttcccaggatttcttcttttccctattagCCAAAGTCCAAGAGGCTACAGACCATGTAGTTGGTAGACACTGCAGTCCTAGCATGCAGGACAGGAGTCGG---------------GCCATGATCCATGAGGTCCAAAGGTTAATTAATCTTGTCTCTGAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTGAAGAATTATATCATCCCCAAAgtaggagtggccccctgattgcatttagtgcagttgtaagccaggaaaac Alignment from GeneWise CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG tcagtctcattgtatctgtttttcccaggatttcttcttttccctattagCCAAAGTCCAAGAGGCTACAGACCATGTAGTTGGTAGACACTGCAGTCCTAGCATGCAGGACAGGAGTCGG---------------GCCATGATCCATGAGGTCCAAAGGTTAATTAATCTTGTCTCTGAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTGAAGAATTATATCATCCCCAAAgtaggagtggccccctgattgcatttagtgcagttgtaagccaggaaaac #### Cyp2c38_ID7775_5 --> 0 - 0 Original Alignment GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG agactatctcacataaataataagtaggtaagcagcccattccattgcagGTCTGTAATAACTTCCCATTACTTGCT---TATTCCCCAGGGAGTCATCACAAACTGCTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTGAAGGAACATCAAGAATCACTCGATGTCACAAACTCCCGGGACTTTATTGATTACGTCCTAATTAAACAAAAACAAgtagcataagagtctgttaatcagctagctgagacccactcacataaacc Alignment from CESAR GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG agactatctcacataaataataagtaggtaagcagcccattccattgcagGTCTGTAATAACTTCCCATTACTTGCT---TATTCCCCAGGGAGTCATCACAAACTGCTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTGAAGGAACATCAAGAATCACTCGATGTCACAAACTCCCGGGACTTTATTGATTACGTCCTAATTAAACAAAAACAAgtagcataagagtctgttaatcagctagctgagacccactcacataaacc Alignment from Spaln_aa2Genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG agactatctcacataaataataagtaggtaagcagcccattccattgcagGTCTGTAATAACTTCCCATTACTTGCT---TATTCCCCAGGGAGTCATCACAAACTGCTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTGAAGGAACATCAAGAATCACTCGATGTCACAAACTCCCGGGACTTTATTGATTACGTCCTAATTAAACAAAAACAAgtagcataagagtctgttaatcagctagctgagacccactcacataaacc Alignment from Spaln_nt2Genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG agactatctcacataaataataagtaggtaagcagcccattccattgcagGTCTGTAATAACTTCCCATTAC---TTGCTTATTCCCCAGGGAGTCATCACAAACTGCTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTGAAGGAACATCAAGAATCACTCGATGTCACAAACTCCCGGGACTTTATTGATTACGTCCTAATTAAACAAAAACAAgtagcataagagtctgttaatcagctagctgagacccactcacataaacc Alignment from Pairagon GTCTGCAATAATTTCCC----CTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG agactatctcacataaataataagtaggtaagcagcccattccattgcagGTCTGTAATAACTTCCCATTACTTGCT-------TATTCCCCAGGGAGTCATCACAAACTGCTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTGAAGGAACATCAAGAATCACTCGATGTCACAAACTCCCGGGACTTTATTGATTACGTCCTAATTAAACAAAAACAAgtagcataagagtctgttaatcagctagctgagacccactcacataaacc Alignment from Exonerate_protein2genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG agactatctcacataaataataagtaggtaagcagcccattccattgcagGTCTGTAATAACTTCCCATTACTTGCT---TATTCCCCAGGGAGTCATCACAAACTGCTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTGAAGGAACATCAAGAATCACTCGATGTCACAAACTCCCGGGACTTTATTGATTACGTCCTAATTAAACAAAAACAAgtagcataagagtctgttaatcagctagctgagacccactcacataaacc Alignment from Exonerate_coding2genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG agactatctcacataaataataagtaggtaagcagcccattccattgcagGTCTGTAATAACTTCCCATTACTTGCT---TATTCCCCAGGGAGTCATCACAAACTGCTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTGAAGGAACATCAAGAATCACTCGATGTCACAAACTCCCGGGACTTTATTGATTACGTCCTAATTAAACAAAAACAAgtagcataagagtctgttaatcagctagctgagacccactcacataaacc Alignment from GeneWise GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG agactatctcacataaataataagtaggtaagcagcccattccattgcagGTCTGTAATAACTTCCCATTACTTGCT---TATTCCCCAGGGAGTCATCACAAACTGCTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTGAAGGAACATCAAGAATCACTCGATGTCACAAACTCCCGGGACTTTATTGATTACGTCCTAATTAAACAAAAACAAgtagcataagagtctgttaatcagctagctgagacccactcacataaacc #### Cyp2c38_ID7776_4 --> 2 - 0 Original Alignment gcTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgagactggcactatttagtcaaatccaccccctactttcctttcaggcTCACCCTGTGATGCCACATTTATTCCACGCTGTGCCCCATGCAATGTCACCTGCTCAATTAGATATCAGGATCGTATTGATTATAAGGACAAAGATTTCCTTACACTTATGAAAAAACTA---AAGAATGTTAAGATC---AGCTCCCCATGGTTGCAGgtgagctcaagcacaatttttttgttggttaacccttctctcatatgagg Alignment from CESAR gcTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgagactggcactatttagtcaaatccaccccctactttcctttcaggcTCACCCTGTGATGCCACATTTATTCCACGCTGTGCCCCATGCAATGTCACCTGCTCAATTAGATATCAGGATCGTATTGATTATAAGGACAAAGATTTCCTTACACTTATGAAAAAACTAAAG---AATGTTAAGATC---AGCTCCCCATGGTTGCAGgtgagctcaagcacaatttttttgttggttaacccttctctcatatgagg Alignment from Spaln_aa2Genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgagactggcactatttagtcaaatccaccccctactttcctttcagGCTCACCCTGTGATGCCACATTTATTCCACGCTGTGCCCCATGCAATGTCACCTGCTCAATTAGATATCAGGATCGTATTGATTATAAGGACAAAGATTTCCTTACACTTATGAAAAAACTAAAG---AATGTTAAGATC---AGCTCCCCATGGTTGCAGgtgagctcaagcacaatttttttgttggttaacccttctctcatatgagg Alignment from Spaln_nt2Genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgagactggcactatttagtcaaatccaccccctactttcctttcagGCTCACCCTGTGATGCCACATTTATTCCACGCTGTGCCCCATGCAATGTCACCTGCTCAATTAGATATCAGGATCGTATTGATTATAAGGACAAAGATTTCCTTACACTTATGAAAAAACTAA---AGAATGTTAAGA---TCAGCTCCCCATGGTTGCAGgtgagctcaagcacaatttttttgttggttaacccttctctcatatgagg Alignment from Pairagon GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgagactggcactatttagtcaaatccaccccctactttcctttcagGCTCACCCTGTGATGCCACATTTATTCCACGCTGTGCCCCATGCAATGTCACCTGCTCAATTAGATATCAGGATCGTATTGATTATAAGGACAAAGATTTCCTTACACTTATGAAAAAACTAA---AGAATGTTAAGATC---AGCTCCCCATGGTTGCAGgtgagctcaagcacaatttttttgttggttaacccttctctcatatgagg Alignment from Exonerate_protein2genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgagactggcactatttagtcaaatccaccccctactttcctttcagGCTCACCCTGTGATGCCACATTTATTCCACGCTGTGCCCCATGCAATGTCACCTGCTCAATTAGATATCAGGATCGTATTGATTATAAGGACAAAGATTTCCTTACACTTATGAAAAAACTA---AAGAATGTTAAGATC---AGCTCCCCATGGTTGCAGgtgagctcaagcacaatttttttgttggttaacccttctctcatatgagg Alignment from Exonerate_coding2genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgagactggcactatttagtcaaatccaccccctactttcctttcagGCTCACCCTGTGATGCCACATTTATTCCACGCTGTGCCCCATGCAATGTCACCTGCTCAATTAGATATCAGGATCGTATTGATTATAAGGACAAAGATTTCCTTACACTTATGAAAAAACTA---AAGAATGTTAAGATC---AGCTCCCCATGGTTGCAGgtgagctcaagcacaatttttttgttggttaacccttctctcatatgagg Alignment from GeneWise GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgagactggcactatttagtcaaatccaccccctactttcctttcagGCTCACCCTGTGATGCCACATTTATTCCACGCTGTGCCCCATGCAATGTCACCTGCTCAATTAGATATCAGGATCGTATTGATTATAAGGACAAAGATTTCCTTACACTTATGAAAAAACTA---AAGAATGTTAAGATC---AGCTCCCCATGGTTGCAGgtgagctcaagcacaatttttttgttggttaacccttctctcatatgagg #### Cyp2c39_ID7788_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACCATGTGATTGGTAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCCTATACCGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCCAAG agtataagttttgaccttagaattaaaagtaatgcaattactatctgcagctAAGGTCCAAGAAGAGATTGATCATGTGATTGGCAGACATTGCAGCCCATGCATGCAGGAGAGGAATCATATGCCTTATACAGATGCAATGGTTCATGAGGTGCAAAGATTTATCAACCTTGTTCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCTAAGgtatgtttaatcctcttactacaccaacctccaagcagcacaaaaccaat Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACCATGTGATTGGTAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCCTATACCGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCCAAG agtataagttttgaccttagaattaaaagtaatgcaattactatctgcagctAAGGTCCAAGAAGAGATTGATCATGTGATTGGCAGACATTGCAGCCCATGCATGCAGGAGAGGAATCATATGCCTTATACAGATGCAATGGTTCATGAGGTGCAAAGATTTATCAACCTTGTTCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCTAAGgtatgtttaatcctcttactacaccaacctccaagcagcacaaaaccaat Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACCATGTGATTGGTAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCCTATACCGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCCAAG agtataagttttgaccttagaattaaaagtaatgcaattactatctgcagCTAAGGTCCAAGAAGAGATTGATCATGTGATTGGCAGACATTGCAGCCCATGCATGCAGGAGAGGAATCATATGCCTTATACAGATGCAATGGTTCATGAGGTGCAAAGATTTATCAACCTTGTTCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCTAAGgtatgtttaatcctcttactacaccaacctccaagcagcacaaaaccaat Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACCATGTGATTGGTAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCCTATACCGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCCAAG agtataagttttgaccttagaattaaaagtaatgcaattactatctgcagCTAAGGTCCAAGAAGAGATTGATCATGTGATTGGCAGACATTGCAGCCCATGCATGCAGGAGAGGAATCATATGCCTTATACAGATGCAATGGTTCATGAGGTGCAAAGATTTATCAACCTTGTTCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCTAAGgtatgtttaatcctcttactacaccaacctccaagcagcacaaaaccaat Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACCATGTGATTGGTAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCCTATACCGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCCAAG agtataagttttgaccttagaattaaaagtaatgcaattactatctgcagCTAAGGTCCAAGAAGAGATTGATCATGTGATTGGCAGACATTGCAGCCCATGCATGCAGGAGAGGAATCATATGCCTTATACAGATGCAATGGTTCATGAGGTGCAAAGATTTATCAACCTTGTTCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCTAAGgtatgtttaatcctcttactacaccaacctccaagcagcacaaaaccaat Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACCATGTGATTGGTAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCCTATACCGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCCAAG agtataagttttgaccttagaattaaaagtaatgcaattactatctgcagCTAAGGTCCAAGAAGAGATTGATCATGTGATTGGCAGACATTGCAGCCCATGCATGCAGGAGAGGAATCATATGCCTTATACAGATGCAATGGTTCATGAGGTGCAAAGATTTATCAACCTTGTTCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCTAAGgtatgtttaatcctcttactacaccaacctccaagcagcacaaaaccaat Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACCATGTGATTGGTAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCCTATACCGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCCAAG agtataagttttgaccttagaattaaaagtaatgcaattactatctgcagCTAAGGTCCAAGAAGAGATTGATCATGTGATTGGCAGACATTGCAGCCCATGCATGCAGGAGAGGAATCATATGCCTTATACAGATGCAATGGTTCATGAGGTGCAAAGATTTATCAACCTTGTTCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCTAAGgtatgtttaatcctcttactacaccaacctccaagcagcacaaaaccaat Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACCATGTGATTGGTAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCCTATACCGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCCAAG agtataagttttgaccttagaattaaaagtaatgcaattactatctgcagCTAAGGTCCAAGAAGAGATTGATCATGTGATTGGCAGACATTGCAGCCCATGCATGCAGGAGAGGAATCATATGCCTTATACAGATGCAATGGTTCATGAGGTGCAAAGATTTATCAACCTTGTTCCTAACAACATACCCCGTGCAGTGACTTGTGACATTAAATTTAGGAACTACCTCATCCCTAAGgtatgtttaatcctcttactacaccaacctccaagcagcacaaaaccaat #### Cyp2c39_ID7789_8 --> 0 - 1 Original Alignment GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAg tgaaatgtttcttttggagatgactttctttgtttttttctgtcctttagGGGACCTCAGCTGTAACATCACTAAAATCAGTGCTACAT---GGCACAGAGTTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCGAATGGGAACTTTAAGAAGAGCCCCACACTAATGCCCTTTTCCGCTggtaggattgtcagggctctaatggcaaaaagcctttagccaaattgttct Alignment from CESAR GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAg tgaaatgtttcttttggagatgactttctttgtttttttctgtcctttagGGGACCTCAGCTGTAACATCACTAAAATCAGTGCTACAT---GGCACAGAGTTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCGAATGGGAACTTTAAGAAGAGCCCCACACTAATGCCCTTTTCCGCTggtaggattgtcagggctctaatggcaaaaagcctttagccaaattgttct Alignment from Spaln_aa2Genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctttgtttttttctgtcctttagGGGACCTCAGCTGTAACATCACTAAAATCAGTGCTACATGGCACA---GAGTTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCGAATGGGAACTTTAAGAAGAGCCCCACACTAATGCCCTTTTCCGCTGgtaggattgtcagggctctaatggcaaaaagcctttagccaaattgttct Alignment from Spaln_nt2Genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctttgtttttttctgtcctttagGGGACCTCAGCTGTAACATCACTAAAATCAGTGCTACATG---GCACAGAGTTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCGAATGGGAACTTTAAGAAGAGCCCCACACTAATGCCCTTTTCCGCTGgtaggattgtcagggctctaatggcaaaaagcctttagccaaattgttct Alignment from Pairagon GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctttgtttttttctgtcctttagGGGACCTCAGCTGTAACATCACTAAAATCAGTGCTACATG---GCACAGAGTTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCGAATGGGAACTTTAAGAAGAGCCCCACACTAATGCCCTTTTCCGCTGgtaggattgtcagggctctaatggcaaaaagcctttagccaaattgttct Alignment from Exonerate_protein2genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctttgtttttttctgtcctttagGGGACCTCAGCTGTAACATCACTAAAATCAGTGCTACATGGCACA---GAGTTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCGAATGGGAACTTTAAGAAGAGCCCCACACTAATGCCCTTTTCCGCTGgtaggattgtcagggctctaatggcaaaaagcctttagccaaattgttct Alignment from Exonerate_coding2genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctttgtttttttctgtcctttagGGGACCTCAGCTGTAACATCACTAAAATCAGTGCTACATGGCACA---GAGTTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCGAATGGGAACTTTAAGAAGAGCCCCACACTAATGCCCTTTTCCGCTGgtaggattgtcagggctctaatggcaaaaagcctttagccaaattgttct Alignment from GeneWise GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctttgtttttttctgtcctttagGGGACCTCAGCTGTAACATCACTAAAATCAGTGCTACATGGCACA---GAGTTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCGAATGGGAACTTTAAGAAGAGCCCCACACTAATGCCCTTTTCCGCTGgtaggattgtcagggctctaatggcaaaaagcctttagccaaattgttct #### Cyp2c44_ID8884_7 --> 2 - 0 Original Alignment ccAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACAC---TATGTCATCCCCAAG tgcagtttaccttggtactgggaatcccgacaatgtgggctctgctgcagcaAAAGTTCATGAAGAACTTGACTGTGTTATTGGCTGCCATCAACCCCCTAGCATGGAAGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATAAGATACAAAGGTACAGTACTCTTCTCCCATCAAGTCTACCCCATCCCGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTTATTCCAAAAgtgatcataagaacagctcccgaagacacagagacataaattggcacaga Alignment from CESAR ccAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG tgcagtttaccttggtactgggaatcccgacaatgtgggctctgctgcagcaAAAGTTCATGAAGAACTTGACTGTGTTATTGGCTGCCATCAACCCCCTAGCATGGAAGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATAAGATACAAAGGTACAGTACTCTTCTCCCATCAAGTCTACCCCATCCCGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTTATTCCAAAAgtgatcataagaacagctcccgaagacacagagacataaattggcacaga Alignment from Spaln_aa2Genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG tgcagtttaccttggtactgggaatcccgacaatgtgggctctgctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGCTGCCATCAACCCCCTAGCATGGAAGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATAAGATACAAAGGTACAGTACTCTTCTCCCATCAAGTCTACCCCATCCCGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTTATTCCAAAAgtgatcataagaacagctcccgaagacacagagacataaattggcacaga Alignment from Spaln_nt2Genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACAC---TATGTCATCCCCAAG tgcagtttaccttggtactgggaatcccgacaatgtgggctctgctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGCTGCCATCAACCCCCTAGCATGGAAGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATAAGATACAAAGGTACAGTACTCTTCTCCCATCAAGTCTACCCCATCCCGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTTATTCCAAAAgtgatcataagaacagctcccgaagacacagagacataaattggcacaga Alignment from Pairagon CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAG---ACACTATGTCATCCCCAAG tgcagtttaccttggtactgggaatcccgacaatgtgggctctgctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGCTGCCATCAACCCCCTAGCATGGAAGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATAAGATACAAAGGTACAGTACTCTTCTCCCATCAAGTCTACCCCATCCCGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTTATTCCAAAAgtgatcataagaacagctcccgaagacacagagacataaattggcacaga Alignment from Exonerate_protein2genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG tgcagtttaccttggtactgggaatcccgacaatgtgggctctgctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGCTGCCATCAACCCCCTAGCATGGAAGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATAAGATACAAAGGTACAGTACTCTTCTCCCATCAAGTCTACCCCATCCCGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTTATTCCAAAAgtgatcataagaacagctcccgaagacacagagacataaattggcacaga Alignment from Exonerate_coding2genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG tgcagtttaccttggtactgggaatcccgacaatgtgggctctgctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGCTGCCATCAACCCCCTAGCATGGAAGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATAAGATACAAAGGTACAGTACTCTTCTCCCATCAAGTCTACCCCATCCCGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTTATTCCAAAAgtgatcataagaacagctcccgaagacacagagacataaattggcacaga Alignment from GeneWise CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG tgcagtttaccttggtactgggaatcccgacaatgtgggctctgctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGCTGCCATCAACCCCCTAGCATGGAAGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATAAGATACAAAGGTACAGTACTCTTCTCCCATCAAGTCTACCCCATCCCGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTTATTCCAAAAgtgatcataagaacagctcccgaagacacagagacataaattggcacaga #### Cyp2c50_ID7863_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacaggcTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACTCAATTATTTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTT---gtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg Alignment from CESAR gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacaggcTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACTCAATTATTTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTT---gtaaattcagatatttgggattacacccgtttgctgttattttaagt Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACTCAATTATTTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTTgtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACTCAATTATTTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGgtttgtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg Alignment from Pairagon GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACTCAATTATTTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTTgtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACTCAATTATTTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTTgtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACTCAATTATTTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGGTTTgtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg Alignment from GeneWise GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG tgtctagcttccatacctagctttagtccaccacctcgcctgtgtcacagGCTCACTGTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCCGCAATGATATTCACTCAATTATTTTTGATGATCGATTCGAATATAAAGATCGGGATTTTCTGAATTTGATGGAAAAGTTAAATAAAATATCCAAAATAATGAGTATGCCATGG---TTTgtaaattcagatatttgggattacacccgtttgctgttattttaagtgtg #### Cyp2c54_ID7851_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gtacacacgagcatacactgtagtccttacagaaccctcttttcttgtagctAAGGTGCAGGTAGAAATTGAGCATGTTATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGTCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTCTCCCTAATAATCTGCCTCATGAAGTGTCTTGTGATATTAAGTTTCGGAACTACTTTATACCCAAGgtaagtttcttgatttgcgcctatttctccatacaccggtagaaccttaa Alignment from CESAR ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gtacacacgagcatacactgtagtccttacagaaccctcttttcttgtagctAAGGTGCAGGTAGAAATTGAGCATGTTATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGTCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTCTCCCTAATAATCTGCCTCATGAAGTGTCTTGTGATATTAAGTTTCGGAACTACTTTATACCCAAGgtaagtttcttgatttgcgcctatttctccatacaccggtagaaccttaa Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gtacacacgagcatacactgtagtccttacagaaccctcttttcttgtagCTAAGGTGCAGGTAGAAATTGAGCATGTTATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGTCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTCTCCCTAATAATCTGCCTCATGAAGTGTCTTGTGATATTAAGTTTCGGAACTACTTTATACCCAAGgtaagtttcttgatttgcgcctatttctccatacaccggtagaaccttaa Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gtacacacgagcatacactgtagtccttacagaaccctcttttcttgtagCTAAGGTGCAGGTAGAAATTGAGCATGTTATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGTCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTCTCCCTAATAATCTGCCTCATGAAGTGTCTTGTGATATTAAGTTTCGGAACTACTTTATACCCAAGgtaagtttcttgatttgcgcctatttctccatacaccggtagaaccttaa Alignment from Pairagon CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gtacacacgagcatacactgtagtccttacagaaccctcttttcttgtagCTAAGGTGCAGGTAGAAATTGAGCATGTTATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGTCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTCTCCCTAATAATCTGCCTCATGAAGTGTCTTGTGATATTAAGTTTCGGAACTACTTTATACCCAAGgtaagtttcttgatttgcgcctatttctccatacaccggtagaaccttaa Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gtacacacgagcatacactgtagtccttacagaaccctcttttcttgtagCTAAGGTGCAGGTAGAAATTGAGCATGTTATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGTCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTCTCCCTAATAATCTGCCTCATGAAGTGTCTTGTGATATTAAGTTTCGGAACTACTTTATACCCAAGgtaagtttcttgatttgcgcctatttctccatacaccggtagaaccttaa Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gtacacacgagcatacactgtagtccttacagaaccctcttttcttgtagCTAAGGTGCAGGTAGAAATTGAGCATGTTATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGTCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTCTCCCTAATAATCTGCCTCATGAAGTGTCTTGTGATATTAAGTTTCGGAACTACTTTATACCCAAGgtaagtttcttgatttgcgcctatttctccatacaccggtagaaccttaa Alignment from GeneWise CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gtacacacgagcatacactgtagtccttacagaaccctcttttcttgtagCTAAGGTGCAGGTAGAAATTGAGCATGTTATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGTCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTCTCCCTAATAATCTGCCTCATGAAGTGTCTTGTGATATTAAGTTTCGGAACTACTTTATACCCAAGgtaagtttcttgatttgcgcctatttctccatacaccggtagaaccttaa #### Cyp2c65_ID7740_6 --> 0 - 1 Original Alignment GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTAC------TCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg gtcataagaatacatggttagggtacatgcaactgtatcttttcttatagGACAAACATAACCCTAAAGCTGAGTTTAGTTGTGAAAATTTAGTCTTTACCTCATCTAAA---TTTGGTGACGGGGCAGAAACAACAAGCACAACCCTCAGGTACTGGTATTCACTG---------CTCAAGTATCCA---TTGACAagtaagtgctcacagctgcgttttagaaaccagaatgcaaaacttgcaact Alignment from CESAR GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTAC------TCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg gtcataagaatacatggttagggtacatgcaactgtatcttttcttatagGACAAACATAACCCTAAAGCTGAGTTTAGTTGTGAAAATTTAGTCTTTACCTCATCTAAA---TTTGGTGACGGGGCAGAAACAACAAGCACAACCCTCAGGTACTGGTATTCA---------CTGCTCAAGTATCCA---TTGACAagtaagtgctcacagctgcgttttagaaaccagaatgcaaaacttgcaact Alignment from Spaln_aa2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG gtcataagaatacatggttagggtacatgcaactgtatcttttcttatagGACAAACATAACCCTAAAGCTGAGTTTAGTTGTGAAAATTTAGTCTTTACCTCATCTAAA---TTTGGTGACGGGGCAGAAACAACAAGCACAACCCTCAGGTAC---TGGTATTCACTGCTCAAGTATCCA---TTGACAAgtaagtgctcacagctgcgttttagaaaccagaatgcaaaacttgcaact Alignment from Spaln_nt2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTC-CTGCTCAAGTATCCAGAAGTCACAG gtcataagaatacatggttagggtacatgcaactgtatcttttcttatagGACAAACATAACCCTAAAGCTGAGTTTAGTTGTGAAAATTTAGTCTTTACCTCATCTAA---ATTTGGTGACGGGGCAGAAACAACAAGCACAACCCTCAGGTA----CTGGTATTCACTGCTCAAGTATCC---ATTGACAAgtaagtgctcacagctgcgttttagaaaccagaatgcaaaacttgcaact Alignment from Pairagon GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACT--------CTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG gtcataagaatacatggttagggtacatgcaactgtatcttttcttatagGACAAACATAACCCTAAAGCTGAGTTTAGTTGTGAAAATTTAGTCTTTACCTCATCTAA---ATTTGGTGACGGGGCAGAAACAACAAGCACAACCCTCAGGTACTGGTATTCAC-----------TGCTCAAGTATCC---ATTGACAAgtaagtgctcacagctgcgttttagaaaccagaatgcaaaacttgcaact Alignment from Exonerate_protein2genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG gtcataagaatacatggttagggtacatgcaactgtatcttttcttatagGACAAACATAACCCTAAAGCTGAGTTTAGTTGTGAAAATTTAGTCTTTACCTCATCTAAA---TTTGGTGACGGGGCAGAAACAACAAGCACAACCCTCAGGTAC---TGGTATTCACTGCTCAAGTATCCA---TTGACAAgtaagtgctcacagctgcgttttagaaaccagaatgcaaaacttgcaact Alignment from Exonerate_coding2genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG gtcataagaatacatggttagggtacatgcaactgtatcttttcttatagGACAAACATAACCCTAAAGCTGAGTTTAGTTGTGAAAATTTAGTCTTTACCTCATCTAAA---TTTGGTGACGGGGCAGAAACAACAAGCACAACCCTCAGGTAC---TGGTATTCACTGCTCAAGTATCCA---TTGACAAgtaagtgctcacagctgcgttttagaaaccagaatgcaaaacttgcaact Alignment from GeneWise GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG gtcataagaatacatggttagggtacatgcaactgtatcttttcttatagGACAAACATAACCCTAAAGCTGAGTTTAGTTGTGAAAATTTAGTCTTTACCTCATCTAAA---TTTGGTGACGGGGCAGAAACAACAAGCACAACCCTCAGGTAC---TGGTATTCACTGCTCAAGTATCCA---TTGACAAgtaagtgctcacagctgcgttttagaaaccagaatgcaaaacttgcaact #### Cyp2c66_ID7750_5 --> 0 - 0 Original Alignment GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG ctgcgctataaatgccccttcttggcctaacaggatgcctacattttcagGTCTGCAATAATTTTCCTGCTATTATTGATTACTTGCCAGGGAGC---CAAAACCTGCTGAAAAACCTTGATTTCGCAAAACATTACTTT---GCGAAGATAATT------GATGAGTCCTTGGATATAAACAACCCTCGGGACTTCATTGATTGTTTTCTCATTAAAATTGAGCAGgcaagtcttgttgactatttccacatttagatttgatccgataccataca Alignment from CESAR GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG ctgcgctataaatgccccttcttggcctaacaggatgcctacattttcagGTCTGCAATAATTTTCCTGCTATTATTGATTACTTGCCAGGGAGCCAA---AACCTGCTGAAAAACCTTGATTTCGCAAAACATTACTTT---GCGAAGATAATTGAT------GAGTCCTTGGATATAAACAACCCTCGGGACTTCATTGATTGTTTTCTCATTAAAATTGAGCAGgcaagtcttgttgactatttccacatttagatttgatccgataccataca Alignment from Spaln_aa2Genome GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG ctgcgctataaatgccccttcttggcctaacaggatgcctacattttcagGTCTGCAATAATTTTCCTGCTATTATTGATTACTTGCCAGGGAGCCAA---AACCTGCTGAAAAACCTTGATTTCGCAAAACATTACTTT---GCGAAGATAATTGAT------GAGTCCTTGGATATAAACAACCCTCGGGACTTCATTGATTGTTTTCTCATTAAAATTGAGCAGgcaagtcttgttgactatttccacatttagatttgatccgataccataca Alignment from Spaln_nt2Genome GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG ctgcgctataaatgccccttcttggcctaacaggatgcctacattttcagGTCTGCAATAATTTTCCTGCTATTATTGATTACTTGCCAGGGAGCCA---AAACCTGCTGAAAAACCTTGATTTCGCAAAACATTACTTT---GCGAAGATAAT------TGATGAGTCCTTGGATATAAACAACCCTCGGGACTTCATTGATTGTTTTCTCATTAAAATTGAGCAGgcaagtcttgttgactatttccacatttagatttgatccgataccataca Alignment from Pairagon GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTT----------TTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG ctgcgctataaatgccccttcttggcctaacaggatgcctacattttcagGTCTGCAATAATTTTCCTGCTATTATTGATTACTTGCCAGGGAGCCA---AAACCTGCTGAAAAACCTTGATTTCGCAAAACATTACTTTGCGAAGATAATTG-------------------ATGAGTCCTTGGATATAAACAACCCTCGGGACTTCATTGATTGTTTTCTCATTAAAATTGAGCAGgcaagtcttgttgactatttccacatttagatttgatccgataccataca Alignment from Exonerate_protein2genome GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG ctgcgctataaatgccccttcttggcctaacaggatgcctacattttcagGTCTGCAATAATTTTCCTGCTATTATTGATTACTTGCCAGGG---AGCCAAAACCTGCTGAAAAACCTTGATTTCGCAAAACATTACTTT---GCGAAGATAATTGAT------GAGTCCTTGGATATAAACAACCCTCGGGACTTCATTGATTGTTTTCTCATTAAAATTGAGCAGgcaagtcttgttgactatttccacatttagatttgatccgataccataca Alignment from Exonerate_coding2genome GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG ctgcgctataaatgccccttcttggcctaacaggatgcctacattttcagGTCTGCAATAATTTTCCTGCTATTATTGATTACTTGCCAGGG---AGCCAAAACCTGCTGAAAAACCTTGATTTCGCAAAACATTACTTT---GCGAAGATAATTGAT------GAGTCCTTGGATATAAACAACCCTCGGGACTTCATTGATTGTTTTCTCATTAAAATTGAGCAGgcaagtcttgttgactatttccacatttagatttgatccgataccataca Alignment from GeneWise GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG--------- ctgcgctataaatgccccttcttggcctaacaggatgcctacattttcagGTCTGCAATAATTTTCCTGCTATTATTGATTACTTGCCAGGGAGC---CAAAACCTGCTGAAAAACCTTGATTTCGCAAAACATTACTTT---GCGAAGATAATTGAT------GAGTCCTTGGATATAAACAACCCTCGGGACTTCATTGATTGTTTTCTCATTAAAATTGAGCAGGCAAGTCTTgttgactatttccacatttagatttgatccgataccataca #### Cyp2c66_ID7751_6 --> 0 - 1 Original Alignment GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg agtaggcctgtggattaacagtcctcttatctgccttccctctgctgcagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACAcgtgagttgttggacatgatacaaaatcccacttcaaatattctctggctt Alignment from CESAR GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg agtaggcctgtggattaacagtcctcttatctgccttccctctgctgcagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACAcgtgagttgttggacatgatacaaaatcccacttcaaatattctctggctt Alignment from Spaln_aa2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agtaggcctgtggattaacagtcctcttatctgccttccctctgctgcagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACACgtgagttgttggacatgatacaaaatcccacttcaaatattctctggctt Alignment from Spaln_nt2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agtaggcctgtggattaacagtcctcttatctgccttccctctgctgcagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACACgtgagttgttggacatgatacaaaatcccacttcaaatattctctggctt Alignment from Pairagon GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agtaggcctgtggattaacagtcctcttatctgccttccctctgctgcagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACACgtgagttgttggacatgatacaaaatcccacttcaaatattctctggctt Alignment from Exonerate_protein2genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agtaggcctgtggattaacagtcctcttatctgccttccctctgctgcagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACACgtgagttgttggacatgatacaaaatcccacttcaaatattctctggctt Alignment from Exonerate_coding2genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agtaggcctgtggattaacagtcctcttatctgccttccctctgctgcagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACACgtgagttgttggacatgatacaaaatcccacttcaaatattctctggctt Alignment from GeneWise GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agtaggcctgtggattaacagtcctcttatctgccttccctctgctgcagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACACgtgagttgttggacatgatacaaaatcccacttcaaatattctctggctt #### Cyp2c67_ID7794_8 --> 0 - 1 Original Alignment GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg ttttagatgtctgtgctattccccaatgaacagttctgcctgttccttagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAggttagtgacccacttatgccatttaggaaggtccggagaatcaggaccaa Alignment from CESAR GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg ttttagatgtctgtgctattccccaatgaacagttctgcctgttccttagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAggttagtgacccacttatgccatttaggaaggtccggagaatcaggaccaa Alignment from Spaln_aa2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttttagatgtctgtgctattccccaatgaacagttctgcctgttccttagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttagtgacccacttatgccatttaggaaggtccggagaatcaggaccaa Alignment from Spaln_nt2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttttagatgtctgtgctattccccaatgaacagttctgcctgttccttagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGA---CCCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttagtgacccacttatgccatttaggaaggtccggagaatcaggaccaa Alignment from Pairagon GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttttagatgtctgtgctattccccaatgaacagttctgcctgttccttagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGA---CCCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttagtgacccacttatgccatttaggaaggtccggagaatcaggaccaa Alignment from Exonerate_protein2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttttagatgtctgtgctattccccaatgaacagttctgcctgttccttagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttagtgacccacttatgccatttaggaaggtccggagaatcaggaccaa Alignment from Exonerate_coding2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttttagatgtctgtgctattccccaatgaacagttctgcctgttccttagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttagtgacccacttatgccatttaggaaggtccggagaatcaggaccaa Alignment from GeneWise GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttttagatgtctgtgctattccccaatgaacagttctgcctgttccttagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttagtgacccacttatgccatttaggaaggtccggagaatcaggaccaa #### Cyp2c67_ID7796_6 --> 0 - 1 Original Alignment GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATG---AAGCACACACACATCACAg tgagggcttattaatgctaatgaagaccccctccctttgccaccaagcagGAAAAAGGCATAGAACATATGGAGTATACCATTGAACGTCTTGCAACACTTGTT---GACCTGGTTTTTGATGGGACAGAGTCTATCACCTCTACCATGAGATTTGCTTTCTTGCTCTTAATTATGAATCACACGCACATCACAggtgcgccaatgggtcatgaagaatgaacagcttgtattgaagaccagaaa Alignment from CESAR GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTG---ATGAAGCACACACACATCACAg tgagggcttattaatgctaatgaagaccccctccctttgccaccaagcagGAAAAAGGCATAGAACATATGGAGTATACCATTGAACGTCTTGCAACACTTGTT---GACCTGGTTTTTGATGGGACAGAGTCTATCACCTCTACCATGAGATTTGCTTTCTTGCTCTTAATTATGAATCACACGCACATCACAggtgcgccaatgggtcatgaagaatgaacagcttgtattgaagaccagaaa Alignment from Spaln_aa2Genome CAGGAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTG---ATGAAGCACACACACATCACAG tgagggcttattaatgctaatgaagaccccctccctttgccaccaagCAGGAAAAAGGCATAGAACATATGGAGTATACCATTGAACGTCTTGCAACACTTGTT---GACCTGGTTTTTGATGGGACAGAGTCTATCACCTCTACCATGAGATTTGCTTTCTTGCTCTTAATTATGAATCACACGCACATCACAGgtgcgccaatgggtcatgaagaatgaacagcttgtattgaagaccagaaa Alignment from Spaln_nt2Genome CAGGAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGAT---GAAGCACACACACATCACAG tgagggcttattaatgctaatgaagaccccctccctttgccaccaagCAGGAAAAAGGCATAGAACATATGGAGTATACCATTGAACGTCTTGCAACACTTGT---TGACCTGGTTTTTGATGGGACAGAGTCTATCACCTCTACCATGAGATTTGCTTTCTTGCTCTTAATTATGAATCACACGCACATCACAGgtgcgccaatgggtcatgaagaatgaacagcttgtattgaagaccagaaa Alignment from Pairagon CAGGAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTG---ATGAAGCACACACACATCACAG tgagggcttattaatgctaatgaagaccccctccctttgccaccaagCAGGAAAAAGGCATAGAACATATGGAGTATACCATTGAACGTCTTGCAACACTTGT---TGACCTGGTTTTTGATGGGACAGAGTCTATCACCTCTACCATGAGATTTGCTTTCTTGCTCTTAATTATGAATCACACGCACATCACAGgtgcgccaatgggtcatgaagaatgaacagcttgtattgaagaccagaaa Alignment from Exonerate_protein2genome CAGGAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCT---CTCCTGCTCTTGATGAAGCACACACACATCACAG tgagggcttattaatgctaatgaagaccccctccctttgccaccaagCAGGAAAAAGGCATAGAACATATGGAGTATACCATTGAACGTCTTGCAACACTTGTT---GACCTGGTTTTTGATGGGACAGAGTCTATCACCTCTACCATGAGATTTGCTTTCTTGCTCTTAATTATGAATCACACGCACATCACAGgtgcgccaatgggtcatgaagaatgaacagcttgtattgaagaccagaaa Alignment from Exonerate_coding2genome CAGGAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCT---CTCCTGCTCTTGATGAAGCACACACACATCACAG tgagggcttattaatgctaatgaagaccccctccctttgccaccaagCAGGAAAAAGGCATAGAACATATGGAGTATACCATTGAACGTCTTGCAACACTTGTT---GACCTGGTTTTTGATGGGACAGAGTCTATCACCTCTACCATGAGATTTGCTTTCTTGCTCTTAATTATGAATCACACGCACATCACAGgtgcgccaatgggtcatgaagaatgaacagcttgtattgaagaccagaaa Alignment from GeneWise CAGGAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCT---CTCCTGCTCTTGATGAAGCACACACACATCACAG tgagggcttattaatgctaatgaagaccccctccctttgccaccaagCAGGAAAAAGGCATAGAACATATGGAGTATACCATTGAACGTCTTGCAACACTTGTT---GACCTGGTTTTTGATGGGACAGAGTCTATCACCTCTACCATGAGATTTGCTTTCTTGCTCTTAATTATGAATCACACGCACATCACAGgtgcgccaatgggtcatgaagaatgaacagcttgtattgaagaccagaaa #### Cyp2c69_ID7829_6 --> 0 - 1 Original Alignment GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg taacattagtatgcataatgcataataaagcctgagttctgtttttgtag---GAGGACATAGATCACATGGAATATACTATTGAGCACCTAGCAACACTGGTGACTGACTTGGTATTTGGTGGGCCAAAGACATTGGGTTCTACAATGAGATTTGCCCTTTCACTTGTGATGAAGCACACCCACATCACTggtaagtatatgagtcttttagtctgtggacttaaatagctttgtggtcga Alignment from CESAR GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg taacattagtatgcataatgcataataaagcctgagttctgtttttgtagGAG---GACATAGATCACATGGAATATACTATTGAGCACCTAGCAACACTGGTGACTGACTTGGTATTTGGTGGGCCAAAGACATTGGGTTCTACAATGAGATTTGCCCTTTCACTTGTGATGAAGCACACCCACATCACTggtaagtatatgagtcttttagtctgtggacttaaatagctttgtggtcga Alignment from Spaln_aa2Genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG taacattagtatgcataatgcataataaagcctgagttctgtttttgtagGAG---GACATAGATCACATGGAATATACTATTGAGCACCTAGCAACACTGGTGACTGACTTGGTATTTGGTGGGCCAAAGACATTGGGTTCTACAATGAGATTTGCCCTTTCACTTGTGATGAAGCACACCCACATCACTGgtaagtatatgagtcttttagtctgtggacttaaatagctttgtggtcga Alignment from Spaln_nt2Genome AAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG taacattagtatgcataatgcataataaagcctgagttctgtttttgtagGAGGACATAGATCACATGGAATATACTATTGAGCACCTAGCAACACTGGTGACTGACTTGGTATTTGGTGGGCCAAAGACATTGGGTTCTACAATGAGATTTGCCCTTTCACTTGTGATGAAGCACACCCACATCACTGgtaagtatatgagtcttttagtctgtggacttaaatagctttgtggtcga Alignment from Pairagon GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG taacattagtatgcataatgcataataaagcctgagttctgtttttgtagG---AGGACATAGATCACATGGAATATACTATTGAGCACCTAGCAACACTGGTGACTGACTTGGTATTTGGTGGGCCAAAGACATTGGGTTCTACAATGAGATTTGCCCTTTCACTTGTGATGAAGCACACCCACATCACTGgtaagtatatgagtcttttagtctgtggacttaaatagctttgtggtcga Alignment from Exonerate_protein2genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG taacattagtatgcataatgcataataaagcctgagttctgtttttgtagGAG---GACATAGATCACATGGAATATACTATTGAGCACCTAGCAACACTGGTGACTGACTTGGTATTTGGTGGGCCAAAGACATTGGGTTCTACAATGAGATTTGCCCTTTCACTTGTGATGAAGCACACCCACATCACTGgtaagtatatgagtcttttagtctgtggacttaaatagctttgtggtcga Alignment from Exonerate_coding2genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG taacattagtatgcataatgcataataaagcctgagttctgtttttgtagGAG---GACATAGATCACATGGAATATACTATTGAGCACCTAGCAACACTGGTGACTGACTTGGTATTTGGTGGGCCAAAGACATTGGGTTCTACAATGAGATTTGCCCTTTCACTTGTGATGAAGCACACCCACATCACTGgtaagtatatgagtcttttagtctgtggacttaaatagctttgtggtcga Alignment from GeneWise GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG taacattagtatgcataatgcataataaagcctgagttctgtttttgtaggagGAC------ATAGATCACATGGAATATACTATTGAGCACCTAGCAACACTGGTGACTGACTTGGTATTTGGTGGGCCAAAGACATTGGGTTCTACAATGAGATTTGCCCTTTCACTTGTGATGAAGCACACCCACATCACTGgtaagtatatgagtcttttagtctgtggacttaaatagctttgtggtcga #### Cyp2c69_ID7831_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gtttaatctgtatcacagatcctgaaatgggttctctccatattttacaggcTCAACATTTGACCCCCAGTTCATAACAGGGTCCACTCCCTGTAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATCAGGATTACCTTAGCCTGATAGGAAAAGTAATTGATTGCACAGAAATTTTAACTTCTCCTGGATGCCAAgtgagttgaaggtatccctaactgaaacaattgcatgtaacacctataat Alignment from CESAR gcTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gtttaatctgtatcacagatcctgaaatgggttctctccatattttacaggcTCAACATTTGACCCCCAGTTCATAACAGGGTCCACTCCCTGTAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATCAGGATTACCTTAGCCTGATAGGAAAAGTAATTGATTGCACAGAAATTTTAACTTCTCCTGGATGCCAAgtgagttgaaggtatccctaactgaaacaattgcatgtaacacctataat Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gtttaatctgtatcacagatcctgaaatgggttctctccatattttacagGCTCAACATTTGACCCCCAGTTCATAACAGGGTCCACTCCCTGTAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATCAGGATTACCTTAGCCTGATAGGAAAAGTAATTGATTGCACAGAAATTTTAACTTCTCCTGGATGCCAAgtgagttgaaggtatccctaactgaaacaattgcatgtaacacctataat Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gtttaatctgtatcacagatcctgaaatgggttctctccatattttacagGCTCAACATTTGACCCCCAGTTCATAACAGGGTCCACTCCCTGTAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATCAGGATTACCTTAGCCTGATAGGAAAAGTAATTGATTGCACAGAAATTTTAACTTCTCCTGGATGCCAAgtgagttgaaggtatccctaactgaaacaattgcatgtaacacctataat Alignment from Pairagon GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gtttaatctgtatcacagatcctgaaatgggttctctccatattttacagGCTCAACATTTGACCCCCAGTTCATAACAGGGTCCACTCCCTGTAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATCAGGATTACCTTAGCCTGATAGGAAAAGTAATTGATTGCACAGAAATTTTAACTTCTCCTGGATGCCAAgtgagttgaaggtatccctaactgaaacaattgcatgtaacacctataat Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gtttaatctgtatcacagatcctgaaatgggttctctccatattttacagGCTCAACATTTGACCCCCAGTTCATAACAGGGTCCACTCCCTGTAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATCAGGATTACCTTAGCCTGATAGGAAAAGTAATTGATTGCACAGAAATTTTAACTTCTCCTGGATGCCAAgtgagttgaaggtatccctaactgaaacaattgcatgtaacacctataat Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gtttaatctgtatcacagatcctgaaatgggttctctccatattttacagGCTCAACATTTGACCCCCAGTTCATAACAGGGTCCACTCCCTGTAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATCAGGATTACCTTAGCCTGATAGGAAAAGTAATTGATTGCACAGAAATTTTAACTTCTCCTGGATGCCAAgtgagttgaaggtatccctaactgaaacaattgcatgtaacacctataat Alignment from GeneWise GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gtttaatctgtatcacagatcctgaaatgggttctctccatattttacagGCTCAACATTTGACCCCCAGTTCATAACAGGGTCCACTCCCTGTAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATCAGGATTACCTTAGCCTGATAGGAAAAGTAATTGATTGCACAGAAATTTTAACTTCTCCTGGATGCCAAgtgagttgaaggtatccctaactgaaacaattgcatgtaacacctataat #### Cyp2c69_ID7832_3 --> 2 - 1 Original Alignment gcATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGCCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATg taagtttattgtgtgtacatgttcttgtctgtcttgctctttttggccaggcATTGGTTTCAGCCATGGAATTGTTTGGAAAGCAATGAGAGTCTTCACAGTTAATATACTACAGAATTTGACCATGGGAAAGCGGACCATTGAGAACAAAGTGCAGGAGGAAGCTCAATGGCTCACGAAGGAGCTAAGGAAGACAAATggtgcgtgaaggccaaacctaactgcattatctcctatcttgggatgaccg Alignment from CESAR gcATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGCCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATg taagtttattgtgtgtacatgttcttgtctgtcttgctctttttggccaggcATTGGTTTCAGCCATGGAATTGTTTGGAAAGCAATGAGAGTCTTCACAGTTAATATACTACAGAATTTGACCATGGGAAAGCGGACCATTGAGAACAAAGTGCAGGAGGAAGCTCAATGGCTCACGAAGGAGCTAAGGAAGACAAATggtgcgtgaaggccaaacctaactgcattatctcctatcttgggatgaccg Alignment from Spaln_aa2Genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGCCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG taagtttattgtgtgtacatgttcttgtctgtcttgctctttttggccagGCATTGGTTTCAGCCATGGAATTGTTTGGAAAGCAATGAGAGTCTTCACAGTTAATATACTACAGAATTTGACCATGGGAAAGCGGACCATTGAGAACAAAGTGCAGGAGGAAGCTCAATGGCTCACGAAGGAGCTAAGGAAGACAAATGgtgcgtgaaggccaaacctaactgcattatctcctatcttgggatgaccg Alignment from Spaln_nt2Genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGCCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG taagtttattgtgtgtacatgttcttgtctgtcttgctctttttggccagGCATTGGTTTCAGCCATGGAATTGTTTGGAAAGCAATGAGAGTCTTCACAGTTAATATACTACAGAATTTGACCATGGGAAAGCGGACCATTGAGAACAAAGTGCAGGAGGAAGCTCAATGGCTCACGAAGGAGCTAAGGAAGACAAATGgtgcgtgaaggccaaacctaactgcattatctcctatcttgggatgaccg Alignment from Pairagon GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGCCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG taagtttattgtgtgtacatgttcttgtctgtcttgctctttttggccagGCATTGGTTTCAGCCATGGAATTGTTTGGAAAGCAATGAGAGTCTTCACAGTTAATATACTACAGAATTTGACCATGGGAAAGCGGACCATTGAGAACAAAGTGCAGGAGGAAGCTCAATGGCTCACGAAGGAGCTAAGGAAGACAAATGgtgcgtgaaggccaaacctaactgcattatctcctatcttgggatgaccg Alignment from Exonerate_protein2genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGCCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG taagtttattgtgtgtacatgttcttgtctgtcttgctctttttggccagGCATTGGTTTCAGCCATGGAATTGTTTGGAAAGCAATGAGAGTCTTCACAGTTAATATACTACAGAATTTGACCATGGGAAAGCGGACCATTGAGAACAAAGTGCAGGAGGAAGCTCAATGGCTCACGAAGGAGCTAAGGAAGACAAATGgtgcgtgaaggccaaacctaactgcattatctcctatcttgggatgaccg Alignment from Exonerate_coding2genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGCCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG taagtttattgtgtgtacatgttcttgtctgtcttgctctttttggccagGCATTGGTTTCAGCCATGGAATTGTTTGGAAAGCAATGAGAGTCTTCACAGTTAATATACTACAGAATTTGACCATGGGAAAGCGGACCATTGAGAACAAAGTGCAGGAGGAAGCTCAATGGCTCACGAAGGAGCTAAGGAAGACAAATGgtgcgtgaaggccaaacctaactgcattatctcctatcttgggatgaccg Alignment from GeneWise -------------------------------------------------GGCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGCCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG TAAGTTTATTGTGTGTACATGTTCTTGTCTGTCTTGCTCTTTTTGGCCAGGCATTGGTTTCAGCCATGGAATTGTTTGGAAAGCAATGAGAGTCTTCACAGTTAATATACTACAGAATTTGACCATGGGAAAGCGGACCATTGAGAACAAAGTGCAGGAGGAAGCTCAATGGCTCACGAAGGAGCTAAGGAAGACAAATGgtgcgtgaaggccaaacctaactgcattatctcctatcttgggatgaccg #### Cyp2c69_ID7833_2 --> 0 - 1 Original Alignment TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGTGTTCTCTGGAAGAGGAAGTTTTCCGTTTTTTGACAAGGTTTCTAAAGGAAAGg attgacagagccaattcaacaacagatcacttctctgattttgcctttagTTTTCTAAACCATATGGTCCTGTGTTCACATTATTTTTTGGATCACAGTCTGTTGTGGTACTCCAT---------------------GCCCTCATTGACCATGGAGAAGGCTTCACAGGACGCGGAAGTTTTCCTTTTTTTGACAAAGTCTCTAAAGAAAAGggtaagtttattgtgtgtacatgttcttgtccaggacttctgtctcttaca Alignment from CESAR TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGTGTTCTCTGGAAGAGGAAGTTTTCCGTTTTTTGACAAGGTTTCTAAAGGAAAGg attgacagagccaattcaacaacagatcacttctctgattttgcctttagTTTTCTAAACCATATGGTCCTGTGTTCACATTATTTTTTGGATCACAGTCTGTTGTGGTACTCCAT---------------------GCCCTCATTGACCATGGAGAAGGCTTCACAGGACGCGGAAGTTTTCCTTTTTTTGACAAAGTCTCTAAAGAAAAGggtaagtttattgtgtgtacatgttcttgtctgtcttgctctttttggcca Alignment from Spaln_aa2Genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGTGTTCTCTGGAAGAGGAAGTTTTCCGTTTTTTGACAAGGTTTCTAAAGGAAAGG attgacagagccaattcaacaacagatcacttctctgattttgcctttagTTTTCTAAACCATATGGTCCTGTGTTCACATTATTTTTTGGATCACAGTCTGTTGTGGTACTCCAT---------------------GCCCTCATTGACCATGGAGAAGGCTTCACAGGACGCGGAAGTTTTCCTTTTTTTGACAAAGTCTCTAAAGAAAAGGgtaagtttattgtgtgtacatgttcttgtccaggacttctgtctcttaca Alignment from Spaln_nt2Genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGTGTTCTCTGGAAGAGGAAGTTTTCCGTTTTTTGACAAGGTTTCTAAAGGAAAGG attgacagagccaattcaacaacagatcacttctctgattttgcctttagTTTTCTAAACCATATGGTCCTGTGTTCACATTATTTTTTGGATCACAGTCTGTTGTGGTACTCCAT---------------------GCCCTCATTGACCATGGAGAAGGCTTCACAGGACGCGGAAGTTTTCCTTTTTTTGACAAAGTCTCTAAAGAAAAGGgtaagtttattgtgtgtacatgttcttgtccaggacttctgtctcttaca Alignment from Pairagon TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGTGTTCTCTGGAAGAGGAAGTTTTCCGTTTTTTGACAAGGTTTCTAAAGGAAAGG attgacagagccaattcaacaacagatcacttctctgattttgcctttagTTTTCTAAACCATATGGTCCTGTGTTCACATTATTTTTTGGATCACAGTCTGTTGTGGTACTCCAT---------------------GCCCTCATTGACCATGGAGAAGGCTTCACAGGACGCGGAAGTTTTCCTTTTTTTGACAAAGTCTCTAAAGAAAAGGgtaagtttattgtgtgtacatgttcttgtccaggacttctgtctcttaca Alignment from Exonerate_protein2genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGTGTTCTCTGGAAGAGGAAGTTTTCCGTTTTTTGACA AGGTTTCTAAAGGAAAG attgacagagccaattcaacaacagatcacttctctgattttgcctttagTTTTCTAAACCATATGGTCCTGTGTTCACATTATTTTTTGGATCACAGTCTGTTGTGGTACTCCATGCCCTCATTGACCATGGAGAAGGCTTCACAGGACGCGGAAGT---TTTCCTTTTTTTGACAAAGTCTCTAAAGAAAAGGgtaagtttattgtgtgtacatgttcttgtccagGACTTCTGTCTCTTACA Alignment from Exonerate_coding2genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGTGTTCTCTGGAAGAGGAAGTTTTCCGTTTTTTGACA AGGTTTCTAAAGGAAAG attgacagagccaattcaacaacagatcacttctctgattttgcctttagTTTTCTAAACCATATGGTCCTGTGTTCACATTATTTTTTGGATCACAGTCTGTTGTGGTACTCCATGCCCTCATTGACCATGGAGAAGGCTTCACAGGACGCGGAAGT---TTTCCTTTTTTTGACAAAGTCTCTAAAGAAAAGGgtaagtttattgtgtgtacatgttcttgtccagGACTTCTGTCTCTTACA Alignment from GeneWise TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGTGTTCTCTGGAAGAGGAAGTTTTCCGTTTTTTGACAAGGTTTCTAAAGGAAAG--------------------------------------------------- attgacagagccaattcaacaacagatcacttctctgattttgcctttagTTTTCTAAACCATATGGTCCTGTGTTCACATTATTTTTTGGATCACAGTCTGTTGTGGTACTCCAT---------------------GCCCTCATTGACCATGGAGAAGGCTTCACAGGACGCGGAAGTTTTCCTTTTTTTGACAAAGTCTCTAAAGAAAAGGGTAAGTTTATTGTGTGTACATGTTCTTGTCCAGGACTTCTGTCTCTTACA #### Cyp2c70_ID7874_6 --> 0 - 1 Original Alignment GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAg atgagtcaccctctatacactactttacgcatctgagtttctgtctccagGGGAAATACAATCAGAAGTCTAAATTCTCCATAGACAACCTACTTCTAAGCATACGTGATCTGTTTGGAACTGGCACTGAAACTACTTGTTCCATAGTCAAATATGGACTCCTGCTTCTGCTTAAGCATCCTGAGGTTACGggtgagtttaggtgcgcaaaggtgtattaacctatgctgtagtggaatact Alignment from CESAR GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAg atgagtcaccctctatacactactttacgcatctgagtttctgtctccagGGGAAATACAATCAGAAGTCTAAATTCTCCATAGACAACCTACTTCTAAGCATACGTGATCTGTTTGGAACTGGCACTGAAACTACTTGTTCCATAGTCAAATATGGACTCCTGCTTCTGCTTAAGCATCCTGAGGTTACGggtgagtttaggtgcgcaaaggtgtattaacctatgctgtagtggaatact Alignment from Spaln_aa2Genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG atgagtcaccctctatacactactttacgcatctgagtttctgtctccagGGGAAATACAATCAGAAGTCTAAATTCTCCATAGACAACCTACTTCTAAGCATACGTGATCTGTTTGGAACTGGCACTGAAACTACTTGTTCCATAGTCAAATATGGACTCCTGCTTCTGCTTAAGCATCCTGAGGTTACGGgtgagtttaggtgcgcaaaggtgtattaacctatgctgtagtggaatact Alignment from Spaln_nt2Genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG atgagtcaccctctatacactactttacgcatctgagtttctgtctccagGGGAAATACAATCAGAAGTCTAAATTCTCCATAGACAACCTACTTCTAAGCATACGTGATCTGTTTGGAACTGGCACTGAAACTACTTGTTCCATAGTCAAATATGGACTCCTGCTTCTGCTTAAGCATCCTGAGGTTACGGgtgagtttaggtgcgcaaaggtgtattaacctatgctgtagtggaatact Alignment from Pairagon GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG atgagtcaccctctatacactactttacgcatctgagtttctgtctccagGGGAAATACAATCAGAAGTCTAAATTCTCCATAGACAACCTACTTCTAAGCATACGTGATCTGTTTGGAACTGGCACTGAAACTACTTGTTCCATAGTCAAATATGGACTCCTGCTTCTGCTTAAGCATCCTGAGGTTACGGgtgagtttaggtgcgcaaaggtgtattaacctatgctgtagtggaatact Alignment from Exonerate_protein2genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG atgagtcaccctctatacactactttacgcatctgagtttctgtctccagGGGAAATACAATCAGAAGTCTAAATTCTCCATAGACAACCTACTTCTAAGCATACGTGATCTGTTTGGAACTGGCACTGAAACTACTTGTTCCATAGTCAAATATGGACTCCTGCTTCTGCTTAAGCATCCTGAGGTTACGGgtgagtttaggtgcgcaaaggtgtattaacctatgctgtagtggaatact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG atgagtcaccctctatacactactttacgcatctgagtttctgtctccagGGGAAATACAATCAGAAGTCTAAATTCTCCATAGACAACCTACTTCTAAGCATACGTGATCTGTTTGGAACTGGCACTGAAACTACTTGTTCCATAGTCAAATATGGACTCCTGCTTCTGCTTAAGCATCCTGAGGTTACGGgtgagtttaggtgcgcaaaggtgtattaacctatgctgtagtggaatact #### Cyp2c70_ID7875_5 --> 0 - 0 Original Alignment CTGTGCAGTGCCTACCCTATTTTATACTATCTCCCTGGAATCCATAACAGATTCTTAAAAGATGTGACTCAACAGAAAAAGTTCATCTTGGAGGAAATAAACAGGCATCAAAAATCTCTGGACCTCAGTAACCCTCAGGACTTTATTGACTACTTCTTGATTAAAATGGAAAAG tcgatgatttaaacatttaaagttgtcaaccgtcagtcctgtctttgcagTTATGTAGTGCTTACCCTATTTTATATTACCTCCCCGGGATTCATAATCGGTTCTTAAAAGATGTTACCCAGCAGAAGAAGTTTATCCTTGAAGAGATAAACAGACATCAGAAATCCCTTGACCTTAGTAACCCCCAGGACTTTATTGACTTCTTCTTAATAAAGATGGAGAGTgcccacatggttcttcactttgtgcaacttgttttcctatagaccttgcc Alignment from CESAR CTGTGCAGTGCCTACCCTATTTTATACTATCTCCCTGGAATCCATAACAGATTCTTAAAAGATGTGACTCAACAGAAAAAGTTCATCTTGGAGGAAATAAACAGGCATCAAAAATCTCTGGACCTCAGTAACCCTCAGGACTTTATTGACTACTTCTTGATTAAAATGGAAAAG tcgatgatttaaacatttaaagttgtcaaccgtcagtcctgtctttgcagTTATGTAGTGCTTACCCTATTTTATATTACCTCCCCGGGATTCATAATCGGTTCTTAAAAGATGTTACCCAGCAGAAGAAGTTTATCCTTGAAGAGATAAACAGACATCAGAAATCCCTTGACCTTAGTAACCCCCAGGACTTTATTGACTTCTTCTTAATAAAGATGGAGAGTgcccacatggttcttcactttgtgcaacttgttttcctatagaccttgcc Alignment from Spaln_aa2Genome CTGTGCAGTGCCTACCCTATTTTATACTATCTCCCTGGAATCCATAACAGATTCTTAAAAGATGTGACTCAACAGAAAAAGTTCATCTTGGAGGAAATAAACAGGCATCAAAAATCTCTGGACCTCAGTAACCCTCAGGACTTTATTGACTACTTCTTGATTAAAATGGAAAAG tcgatgatttaaacatttaaagttgtcaaccgtcagtcctgtctttgcagTTATGTAGTGCTTACCCTATTTTATATTACCTCCCCGGGATTCATAATCGGTTCTTAAAAGATGTTACCCAGCAGAAGAAGTTTATCCTTGAAGAGATAAACAGACATCAGAAATCCCTTGACCTTAGTAACCCCCAGGACTTTATTGACTTCTTCTTAATAAAGATGGAGAGTgcccacatggttcttcactttgtgcaacttgttttcctatagaccttgcc Alignment from Spaln_nt2Genome CTGTGCAGTGCCTACCCTATTTTATACTATCTCCCTGGAATCCATAACAGATTCTTAAAAGATGTGACTCAACAGAAAAAGTTCATCTTGGAGGAAATAAACAGGCATCAAAAATCTCTGGACCTCAGTAACCCTCAGGACTTTATTGACTACTTCTTGATTAAAATGGAAA tcgatgatttaaacatttaaagttgtcaaccgtcagtcctgtctttgcagTTATGTAGTGCTTACCCTATTTTATATTACCTCCCCGGGATTCATAATCGGTTCTTAAAAGATGTTACCCAGCAGAAGAAGTTTATCCTTGAAGAGATAAACAGACATCAGAAATCCCTTGACCTTAGTAACCCCCAGGACTTTATTGACTTCTTCTTAATAAAGATGGAGAgtgcccacatggttcttcactttgtgcaacttgttttcctatagaccttgcc Alignment from Pairagon CTGTGCAGTGCCTACCCTATTTTATACTATCTCCCTGGAATCCATAACAGATTCTTAAAAGATGTGACTCAACAGAAAAAGTTCATCTTGGAGGAAATAAACAGGCATCAAAAATCTCTGGACCTCAGTAACCCTCAGGACTTTATTGACTACTTCTTGATTAAAATGGAAA tcgatgatttaaacatttaaagttgtcaaccgtcagtcctgtctttgcagTTATGTAGTGCTTACCCTATTTTATATTACCTCCCCGGGATTCATAATCGGTTCTTAAAAGATGTTACCCAGCAGAAGAAGTTTATCCTTGAAGAGATAAACAGACATCAGAAATCCCTTGACCTTAGTAACCCCCAGGACTTTATTGACTTCTTCTTAATAAAGATGGAGAgtgcccacatggttcttcactttgtgcaacttgttttcctatagaccttgcc Alignment from Exonerate_protein2genome CTGTGCAGTGCCTACCCTATTTTATACTATCTCCCTGGAATCCATAACAGATTCTTAAAAGATGTGACTCAACAGAAAAAGTTCATCTTGGAGGAAATAAACAGGCATCAAAAATCTCTGGACCTCAGTAACCCTCAGGACTTTATTGACTACTTCTTGATTAAAATGGAAA tcgatgatttaaacatttaaagttgtcaaccgtcagtcctgtctttgcagTTATGTAGTGCTTACCCTATTTTATATTACCTCCCCGGGATTCATAATCGGTTCTTAAAAGATGTTACCCAGCAGAAGAAGTTTATCCTTGAAGAGATAAACAGACATCAGAAATCCCTTGACCTTAGTAACCCCCAGGACTTTATTGACTTCTTCTTAATAAAGATGGAGAgtgcccacatggttcttcactttgtgcaacttgttttcctatagaccttgcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGTGCAGTGCCTACCCTATTTTATACTATCTCCCTGGAATCCATAACAGATTCTTAAAAGATGTGACTCAACAGAAAAAGTTCATCTTGGAGGAAATAAACAGGCATCAAAAATCTCTGGACCTCAGTAACCCTCAGGACTTTATTGACTACTTCTTGATTAAAATGGAAAAG--------- tcgatgatttaaacatttaaagttgtcaaccgtcagtcctgtctttgcagTTATGTAGTGCTTACCCTATTTTATATTACCTCCCCGGGATTCATAATCGGTTCTTAAAAGATGTTACCCAGCAGAAGAAGTTTATCCTTGAAGAGATAAACAGACATCAGAAATCCCTTGACCTTAGTAACCCCCAGGACTTTATTGACTTCTTCTTAATAAAGATGGAGAGTGCCCACATGgttcttcactttgtgcaacttgttttcctatagaccttgcc #### D19Bwg1357e_ID5836_16 --> 2 - 2 Original Alignment gtTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCag tgggctgtattagtaaactcttgttgtatctcaccacatgctgcccccaggcTGCTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCaggtgagatgcttgggtcatgttatacactatggcacctaactccatttcat Alignment from CESAR gtTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCag tgggctgtattagtaaactcttgttgtatctcaccacatgctgcccccaggcTGCTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCaggtgagatgcttgggtcatgttatacactatggcacctaactccatttcat Alignment from Spaln_aa2Genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG tgggctgtattagtaaactcttgttgtatctcaccacatgctgcccccagGCTGCTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtgagatgcttgggtcatgttatacactatggcacctaactccatttcat Alignment from Spaln_nt2Genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG tgggctgtattagtaaactcttgttgtatctcaccacatgctgcccccagGCTGCTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtgagatgcttgggtcatgttatacactatggcacctaactccatttcat Alignment from Pairagon GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG tgggctgtattagtaaactcttgttgtatctcaccacatgctgcccccagGCTGCTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtgagatgcttgggtcatgttatacactatggcacctaactccatttcat Alignment from Exonerate_protein2genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG tgggctgtattagtaaactcttgttgtatctcaccacatgctgcccccagGCTGCTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtgagatgcttgggtcatgttatacactatggcacctaactccatttcat Alignment from Exonerate_coding2genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG tgggctgtattagtaaactcttgttgtatctcaccacatgctgcccccagGCTGCTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtgagatgcttgggtcatgttatacactatggcacctaactccatttcat Alignment from GeneWise GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG tgggctgtattagtaaactcttgttgtatctcaccacatgctgcccccagGCTGCTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtgagatgcttgggtcatgttatacactatggcacctaactccatttcat #### D19Bwg1357e_ID5837_15 --> 0 - 1 Original Alignment CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAg tctcctggatcagaatacttcgtccaactgggccccctctccttccctagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTGAGGCAAGATAAAAAGATGAAAGAATGTGGAAAGAAGggtacgtgctgtttgcacaggattggggtctaaacttgggagactggttca Alignment from CESAR CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAg tctcctggatcagaatacttcgtccaactgggccccctctccttccctagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTGAGGCAAGATAAAAAGATGAAAGAATGTGGAAAGAAGggtacgtgctgtttgcacaggattggggtctaaacttgggagactggttca Alignment from Spaln_aa2Genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatacttcgtccaactgggccccctctccttccctagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTGAGGCAAGATAAAAAGATGAAAGAATGTGGAAAGAAGGgtacgtgctgtttgcacaggattggggtctaaacttgggagactggttca Alignment from Spaln_nt2Genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatacttcgtccaactgggccccctctccttccctagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTGAGGCAAGATAAAAAGATGAAAGAATGTGGAAAGAAGGgtacgtgctgtttgcacaggattggggtctaaacttgggagactggttca Alignment from Pairagon CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatacttcgtccaactgggccccctctccttccctagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTGAGGCAAGATAAAAAGATGAAAGAATGTGGAAAGAAGGgtacgtgctgtttgcacaggattggggtctaaacttgggagactggttca Alignment from Exonerate_protein2genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatacttcgtccaactgggccccctctccttccctagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTGAGGCAAGATAAAAAGATGAAAGAATGTGGAAAGAAGGgtacgtgctgtttgcacaggattggggtctaaacttgggagactggttca Alignment from Exonerate_coding2genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatacttcgtccaactgggccccctctccttccctagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTGAGGCAAGATAAAAAGATGAAAGAATGTGGAAAGAAGGgtacgtgctgtttgcacaggattggggtctaaacttgggagactggttca Alignment from GeneWise CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatacttcgtccaactgggccccctctccttccctagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTGAGGCAAGATAAAAAGATGAAAGAATGTGGAAAGAAGGgtacgtgctgtttgcacaggattggggtctaaacttgggagactggttca #### D19Bwg1357e_ID5838_14 --> 1 - 0 Original Alignment cAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG ctggaagaaaacatgtacttgctaagctatggtgatttctctctggatagcAAAAAGGACACTGCAATCCGCCAGCATGAACTCTTGGAGTCCATCTCTCCAGCTTTACTGAGCTACCTTCAAGGGCATACGCAAGAGGTGGTGCTGGATAAATCAGCTAGTGTGCTAGTGTCCGACATGTTAGGGACAGCCCCTGGAGATATTCAACCTGCAATGGATGCAATTGCCAGTTTAGCAACAGCAGAATTGCATCCTGGAGGGAGGGATGGAGAAgtatcctactgtgaccatagtaggtcaagggtaagtagagtttcctgcaa Alignment from CESAR cAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG ctggaagaaaacatgtacttgctaagctatggtgatttctctctggatagcAAAAAGGACACTGCAATCCGCCAGCATGAACTCTTGGAGTCCATCTCTCCAGCTTTACTGAGCTACCTTCAAGGGCATACGCAAGAGGTGGTGCTGGATAAATCAGCTAGTGTGCTAGTGTCCGACATGTTAGGGACAGCCCCTGGAGATATTCAACCTGCAATGGATGCAATTGCCAGTTTAGCAACAGCAGAATTGCATCCTGGAGGGAGGGATGGAGAAgtatcctactgtgaccatagtaggtcaagggtaagtagagtttcctgcaa Alignment from Spaln_aa2Genome CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG ctggaagaaaacatgtacttgctaagctatggtgatttctctctggatagCAAAAAGGACACTGCAATCCGCCAGCATGAACTCTTGGAGTCCATCTCTCCAGCTTTACTGAGCTACCTTCAAGGGCATACGCAAGAGGTGGTGCTGGATAAATCAGCTAGTGTGCTAGTGTCCGACATGTTAGGGACAGCCCCTGGAGATATTCAACCTGCAATGGATGCAATTGCCAGTTTAGCAACAGCAGAATTGCATCCTGGAGGGAGGGATGGAGAAgtatcctactgtgaccatagtaggtcaagggtaagtagagtttcctgcaa Alignment from Spaln_nt2Genome CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG ctggaagaaaacatgtacttgctaagctatggtgatttctctctggatagCAAAAAGGACACTGCAATCCGCCAGCATGAACTCTTGGAGTCCATCTCTCCAGCTTTACTGAGCTACCTTCAAGGGCATACGCAAGAGGTGGTGCTGGATAAATCAGCTAGTGTGCTAGTGTCCGACATGTTAGGGACAGCCCCTGGAGATATTCAACCTGCAATGGATGCAATTGCCAGTTTAGCAACAGCAGAATTGCATCCTGGAGGGAGGGATGGAGAAgtatcctactgtgaccatagtaggtcaagggtaagtagagtttcctgcaa Alignment from Pairagon CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG ctggaagaaaacatgtacttgctaagctatggtgatttctctctggatagCAAAAAGGACACTGCAATCCGCCAGCATGAACTCTTGGAGTCCATCTCTCCAGCTTTACTGAGCTACCTTCAAGGGCATACGCAAGAGGTGGTGCTGGATAAATCAGCTAGTGTGCTAGTGTCCGACATGTTAGGGACAGCCCCTGGAGATATTCAACCTGCAATGGATGCAATTGCCAGTTTAGCAACAGCAGAATTGCATCCTGGAGGGAGGGATGGAGAAgtatcctactgtgaccatagtaggtcaagggtaagtagagtttcctgcaa Alignment from Exonerate_protein2genome CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG ctggaagaaaacatgtacttgctaagctatggtgatttctctctggatagCAAAAAGGACACTGCAATCCGCCAGCATGAACTCTTGGAGTCCATCTCTCCAGCTTTACTGAGCTACCTTCAAGGGCATACGCAAGAGGTGGTGCTGGATAAATCAGCTAGTGTGCTAGTGTCCGACATGTTAGGGACAGCCCCTGGAGATATTCAACCTGCAATGGATGCAATTGCCAGTTTAGCAACAGCAGAATTGCATCCTGGAGGGAGGGATGGAGAAgtatcctactgtgaccatagtaggtcaagggtaagtagagtttcctgcaa Alignment from Exonerate_coding2genome CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG ctggaagaaaacatgtacttgctaagctatggtgatttctctctggatagCAAAAAGGACACTGCAATCCGCCAGCATGAACTCTTGGAGTCCATCTCTCCAGCTTTACTGAGCTACCTTCAAGGGCATACGCAAGAGGTGGTGCTGGATAAATCAGCTAGTGTGCTAGTGTCCGACATGTTAGGGACAGCCCCTGGAGATATTCAACCTGCAATGGATGCAATTGCCAGTTTAGCAACAGCAGAATTGCATCCTGGAGGGAGGGATGGAGAAgtatcctactgtgaccatagtaggtcaagggtaagtagagtttcctgcaa Alignment from GeneWise CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG ctggaagaaaacatgtacttgctaagctatggtgatttctctctggatagCAAAAAGGACACTGCAATCCGCCAGCATGAACTCTTGGAGTCCATCTCTCCAGCTTTACTGAGCTACCTTCAAGGGCATACGCAAGAGGTGGTGCTGGATAAATCAGCTAGTGTGCTAGTGTCCGACATGTTAGGGACAGCCCCTGGAGATATTCAACCTGCAATGGATGCAATTGCCAGTTTAGCAACAGCAGAATTGCATCCTGGAGGGAGGGATGGAGAAgtatcctactgtgaccatagtaggtcaagggtaagtagagtttcctgcaa #### D19Bwg1357e_ID5839_13 --> 0 - 2 Original Alignment GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACag tccaaagccaaaaaggccagacatgttccatctttcttgccctttcttagGAAATCATTAGCTCCTTGCCCAGCATCGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTAATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACaggtaagtgatggcttcaaatgcaggaaaccacctgatcttgcatcctttcc Alignment from CESAR GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACag tccaaagccaaaaaggccagacatgttccatctttcttgccctttcttagGAAATCATTAGCTCCTTGCCCAGCATCGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTAATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACaggtaagtgatggcttcaaatgcaggaaaccacctgatcttgcatcctttcc Alignment from Spaln_aa2Genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG tccaaagccaaaaaggccagacatgttccatctttcttgccctttcttagGAAATCATTAGCTCCTTGCCCAGCATCGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTAATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtaagtgatggcttcaaatgcaggaaaccacctgatcttgcatcctttcc Alignment from Spaln_nt2Genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG tccaaagccaaaaaggccagacatgttccatctttcttgccctttcttagGAAATCATTAGCTCCTTGCCCAGCATCGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTAATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtaagtgatggcttcaaatgcaggaaaccacctgatcttgcatcctttcc Alignment from Pairagon GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG tccaaagccaaaaaggccagacatgttccatctttcttgccctttcttagGAAATCATTAGCTCCTTGCCCAGCATCGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTAATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtaagtgatggcttcaaatgcaggaaaccacctgatcttgcatcctttcc Alignment from Exonerate_protein2genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG tccaaagccaaaaaggccagacatgttccatctttcttgccctttcttagGAAATCATTAGCTCCTTGCCCAGCATCGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTAATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtaagtgatggcttcaaatgcaggaaaccacctgatcttgcatcctttcc Alignment from Exonerate_coding2genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG tccaaagccaaaaaggccagacatgttccatctttcttgccctttcttagGAAATCATTAGCTCCTTGCCCAGCATCGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTAATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtaagtgatggcttcaaatgcaggaaaccacctgatcttgcatcctttcc Alignment from GeneWise GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG tccaaagccaaaaaggccagacatgttccatctttcttgccctttcttagGAAATCATTAGCTCCTTGCCCAGCATCGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTAATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtaagtgatggcttcaaatgcaggaaaccacctgatcttgcatcctttcc #### D19Bwg1357e_ID5843_9 --> 1 - 0 Original Alignment gGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA agccagccattcacatgaacacacaaggtaaatgtgaaattatttcataggGAAGCAGTGATTAAGCACTCACTTGTTCATAAGATATTCTTGGACTTCTTCACCTACACGCCACCAAAACCTCGATCTgtgagtgcctgtctcaactcattcaagaaacgttaaggttcctgatatga Alignment from CESAR gGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA agccagccattcacatgaacacacaaggtaaatgtgaaattatttcataggGAAGCAGTGATTAAGCACTCACTTGTTCATAAGATATTCTTGGACTTCTTCACCTACACGCCACCAAAACCTCGATCTgtgagtgcctgtctcaactcattcaagaaacgttaaggttcctgatatga Alignment from Spaln_aa2Genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA agccagccattcacatgaacacacaaggtaaatgtgaaattatttcatagGGAAGCAGTGATTAAGCACTCACTTGTTCATAAGATATTCTTGGACTTCTTCACCTACACGCCACCAAAACCTCGATCTgtgagtgcctgtctcaactcattcaagaaacgttaaggttcctgatatga Alignment from Spaln_nt2Genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA agccagccattcacatgaacacacaaggtaaatgtgaaattatttcatagGGAAGCAGTGATTAAGCACTCACTTGTTCATAAGATATTCTTGGACTTCTTCACCTACACGCCACCAAAACCTCGATCTgtgagtgcctgtctcaactcattcaagaaacgttaaggttcctgatatga Alignment from Pairagon GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA agccagccattcacatgaacacacaaggtaaatgtgaaattatttcatagGGAAGCAGTGATTAAGCACTCACTTGTTCATAAGATATTCTTGGACTTCTTCACCTACACGCCACCAAAACCTCGATCTgtgagtgcctgtctcaactcattcaagaaacgttaaggttcctgatatga Alignment from Exonerate_protein2genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA agccagccattcacatgaacacacaaggtaaatgtgaaattatttcatagGGAAGCAGTGATTAAGCACTCACTTGTTCATAAGATATTCTTGGACTTCTTCACCTACACGCCACCAAAACCTCGATCTgtgagtgcctgtctcaactcattcaagaaacgttaaggttcctgatatga Alignment from Exonerate_coding2genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCG agccagccattcacatgaacacacaaggtaaatgtgaaattatttcatagGGAAGCAGTGATTAAGCACTCACTTGTTCATAAGATATTCTTGGACTTCTTCACCTACACGCCACCAAAACCTCGatctgtgagtgcctgtctcaactcattcaagaaacgttaaggttcctgatatga Alignment from GeneWise GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA agccagccattcacatgaacacacaaggtaaatgtgaaattatttcatagGGAAGCAGTGATTAAGCACTCACTTGTTCATAAGATATTCTTGGACTTCTTCACCTACACGCCACCAAAACCTCGATCTgtgagtgcctgtctcaactcattcaagaaacgttaaggttcctgatatga #### D19Bwg1357e_ID5845_7 --> 1 - 0 Original Alignment aAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG tgtagtggaagattctatgtcttattttcctgatttcctttaaaccatagaAGAAAGCCTCAAGTAGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAGTGT---GACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtaagtctaaggataccatacttcactggacatttgaatgtcagtagctt Alignment from CESAR aAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG tgtagtggaagattctatgtcttattttcctgatttcctttaaaccatagaAGAAAGCCTCAAGTAGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAGTGTGAC---AATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtaagtctaaggataccatacttcactggacatttgaatgtcagtagctt Alignment from Spaln_aa2Genome AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG tgtagtggaagattctatgtcttattttcctgatttcctttaaaccatagAAGAAAGCCTCAAGTAGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAGTGTGAC---AATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtaagtctaaggataccatacttcactggacatttgaatgtcagtagctt Alignment from Spaln_nt2Genome AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG tgtagtggaagattctatgtcttattttcctgatttcctttaaaccatagAAGAAAGCCTCAAGTAGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAGTGTG---ACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtaagtctaaggataccatacttcactggacatttgaatgtcagtagctt Alignment from Pairagon AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG tgtagtggaagattctatgtcttattttcctgatttcctttaaaccatagAAGAAAGCCTCAAGTAGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAGTGTG---ACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtaagtctaaggataccatacttcactggacatttgaatgtcagtagctt Alignment from Exonerate_protein2genome AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG tgtagtggaagattctatgtcttattttcctgatttcctttaaaccatagAAGAAAGCCTCAAGTAGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAG---TGTGACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtaagtctaaggataccatacttcactggacatttgaatgtcagtagctt Alignment from Exonerate_coding2genome CTCATGTATGGAAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG tgtagtggaagattctatgtcttattttcctgatttcctTTAAACCATAGAAGAAAGCCTCAAGTAGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAG---TGTGACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtaagtctaaggataccatacttcactggacatttgaatgtcagtagctt Alignment from GeneWise AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG tgtagtggaagattctatgtcttattttcctgatttcctttaaaccatagAAGAAAGCCTCAAGTAGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAG---TGTGACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtaagtctaaggataccatacttcactggacatttgaatgtcagtagctt #### D19Bwg1357e_ID5848_4 --> 1 - 0 Original Alignment aAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT cctgacttcttctgacttttggagcacaacctgtgacctttcccttgtagaAAGGATTGTGACAAGGAGAAACAGGTCAAACACATGAGTGATTTAGAGAAATTAATTCAAGGGAAGATTAAAACTgtaaggaagtgtcttcctttgccattcatgtgacctgtgatgctgctgaa Alignment from CESAR aAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT cctgacttcttctgacttttggagcacaacctgtgacctttcccttgtagaAAGGATTGTGACAAGGAGAAACAGGTCAAACACATGAGTGATTTAGAGAAATTAATTCAAGGGAAGATTAAAACTgtaaggaagtgtcttcctttgccattcatgtgacctgtgatgctgctgaa Alignment from Spaln_aa2Genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT cctgacttcttctgacttttggagcacaacctgtgacctttcccttgtagAAAGGATTGTGACAAGGAGAAACAGGTCAAACACATGAGTGATTTAGAGAAATTAATTCAAGGGAAGATTAAAACTgtaaggaagtgtcttcctttgccattcatgtgacctgtgatgctgctgaa Alignment from Spaln_nt2Genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT cctgacttcttctgacttttggagcacaacctgtgacctttcccttgtagAAAGGATTGTGACAAGGAGAAACAGGTCAAACACATGAGTGATTTAGAGAAATTAATTCAAGGGAAGATTAAAACTgtaaggaagtgtcttcctttgccattcatgtgacctgtgatgctgctgaa Alignment from Pairagon AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT cctgacttcttctgacttttggagcacaacctgtgacctttcccttgtagAAAGGATTGTGACAAGGAGAAACAGGTCAAACACATGAGTGATTTAGAGAAATTAATTCAAGGGAAGATTAAAACTgtaaggaagtgtcttcctttgccattcatgtgacctgtgatgctgctgaa Alignment from Exonerate_protein2genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT cctgacttcttctgacttttggagcacaacctgtgacctttcccttgtagAAAGGATTGTGACAAGGAGAAACAGGTCAAACACATGAGTGATTTAGAGAAATTAATTCAAGGGAAGATTAAAACTgtaaggaagtgtcttcctttgccattcatgtgacctgtgatgctgctgaa Alignment from Exonerate_coding2genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT cctgacttcttctgacttttggagcacaacctgtgacctttcccttgtagAAAGGATTGTGACAAGGAGAAACAGGTCAAACACATGAGTGATTTAGAGAAATTAATTCAAGGGAAGATTAAAACTgtaaggaagtgtcttcctttgccattcatgtgacctgtgatgctgctgaa Alignment from GeneWise AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT cctgacttcttctgacttttggagcacaacctgtgacctttcccttgtagAAAGGATTGTGACAAGGAGAAACAGGTCAAACACATGAGTGATTTAGAGAAATTAATTCAAGGGAAGATTAAAACTgtaaggaagtgtcttcctttgccattcatgtgacctgtgatgctgctgaa #### D19Ertd737e_ID13191_3 --> 2 - 2 Original Alignment gcAAATTGAAGAATGAAAAGGAATCTCACag ttgacagtagactagactataagtccacactttctttttcctttttttaggcAAGTTGAAAAATGAGAGAGAATCACACaggtaagtatataatatgcgtcctaactaaccttttagcatggcctgaagag Alignment from CESAR gcAAATTGAAGAATGAAAAGGAATCTCACag ttgacagtagactagactataagtccacactttctttttcctttttttaggcAAGTTGAAAAATGAGAGAGAATCACACaggtaagtatataatatgcgtcctaactaaccttttagcatggcctgaagag Alignment from Spaln_aa2Genome GCAAATTGAAGAATGAAAAGGAATCTCACAG ttgacagtagactagactataagtccacactttctttttcctttttttagGCAAGTTGAAAAATGAGAGAGAATCACACAGgtaagtatataatatgcgtcctaactaaccttttagcatggcctgaagag Alignment from Spaln_nt2Genome GCAAATTGAAGAATGAAAAGGAATCTCACAG ttgacagtagactagactataagtccacactttctttttcctttttttagGCAAGTTGAAAAATGAGAGAGAATCACACAGgtaagtatataatatgcgtcctaactaaccttttagcatggcctgaagag Alignment from Pairagon GCAAATTGAAGAATGAAAAGGAATCTCACAG ttgacagtagactagactataagtccacactttctttttcctttttttagGCAAGTTGAAAAATGAGAGAGAATCACACAGgtaagtatataatatgcgtcctaactaaccttttagcatggcctgaagag Alignment from Exonerate_protein2genome GCAAATTGAAGAATGAAAAGGAATCTCACAG ttgacagtagactagactataagtccacactttctttttcctttttttagGCAAGTTGAAAAATGAGAGAGAATCACACAGgtaagtatataatatgcgtcctaactaaccttttagcatggcctgaagag Alignment from Exonerate_coding2genome ttgacagtagactagactataagtccacactttctttttcctttttttaggcaagttgaaaaatgagagagaatcacacaggtaagtatataatatgcgtcctaactaaccttttagcatggcctgaagag Alignment from GeneWise ttgacagtagactagactataagtccacactttctttttcctttttttaggcaagttgaaaaatgagagagaatcacacaggtaagtatataatatgcgtcctaactaaccttttagcatggcctgaagag #### Dagla_ID2754_16 --> 0 - 2 Original Alignment TGGCGGATCATCGTGGGGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCTGCTGAGCAGTGCtg acttcctctcctgtgacccaggtttacatctccaactctcttgcatgtagTGGCGGATCATTGTGGGGGCAACCAAGTGCATCCCAAAGTCTGAACTGCCAAAGGATCAGGTAGAGGTGACAACTTTGGCAAGCACACGACTTTGGGCTCACCCCAGTGATTTGACCATAGGACTCCCAGCCAGTACACCATTGTACCCAGCTGGACGCATCATCCATGTGGTTCACAACCATCCAGCTGAGCAATGTtggtaagtgttcctatctgtgctgttttttgcacctcttattctgggtgtgg Alignment from CESAR TGGCGGATCATCGTGGGGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCTGCTGAGCAGTGCtg acttcctctcctgtgacccaggtttacatctccaactctcttgcatgtagTGGCGGATCATTGTGGGGGCAACCAAGTGCATCCCAAAGTCTGAACTGCCAAAGGATCAGGTAGAGGTGACAACTTTGGCAAGCACACGACTTTGGGCTCACCCCAGTGATTTGACCATAGGACTCCCAGCCAGTACACCATTGTACCCAGCTGGACGCATCATCCATGTGGTTCACAACCATCCAGCTGAGCAATGTtggtaagtgttcctatctgtgctgttttttgcacctcttattctgggtgtgg Alignment from Spaln_aa2Genome TGGCGGATCATCGTGGGGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCTGCTGAGCAGTGCTG acttcctctcctgtgacccaggtttacatctccaactctcttgcatgtagTGGCGGATCATTGTGGGGGCAACCAAGTGCATCCCAAAGTCTGAACTGCCAAAGGATCAGGTAGAGGTGACAACTTTGGCAAGCACACGACTTTGGGCTCACCCCAGTGATTTGACCATAGGACTCCCAGCCAGTACACCATTGTACCCAGCTGGACGCATCATCCATGTGGTTCACAACCATCCAGCTGAGCAATGTTGgtaagtgttcctatctgtgctgttttttgcacctcttattctgggtgtgg Alignment from Spaln_nt2Genome TGGCGGATCATCGTGGGGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCTGCTGAGCAGTGCTG acttcctctcctgtgacccaggtttacatctccaactctcttgcatgtagTGGCGGATCATTGTGGGGGCAACCAAGTGCATCCCAAAGTCTGAACTGCCAAAGGATCAGGTAGAGGTGACAACTTTGGCAAGCACACGACTTTGGGCTCACCCCAGTGATTTGACCATAGGACTCCCAGCCAGTACACCATTGTACCCAGCTGGACGCATCATCCATGTGGTTCACAACCATCCAGCTGAGCAATGTTGgtaagtgttcctatctgtgctgttttttgcacctcttattctgggtgtgg Alignment from Pairagon TGGCGGATCATCGTGGGGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCTGCTGAGCAGTGCTG acttcctctcctgtgacccaggtttacatctccaactctcttgcatgtagTGGCGGATCATTGTGGGGGCAACCAAGTGCATCCCAAAGTCTGAACTGCCAAAGGATCAGGTAGAGGTGACAACTTTGGCAAGCACACGACTTTGGGCTCACCCCAGTGATTTGACCATAGGACTCCCAGCCAGTACACCATTGTACCCAGCTGGACGCATCATCCATGTGGTTCACAACCATCCAGCTGAGCAATGTTGgtaagtgttcctatctgtgctgttttttgcacctcttattctgggtgtgg Alignment from Exonerate_protein2genome TGGCGGATCATCGTGGGGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCTGCTGAGCAGTGCTG acttcctctcctgtgacccaggtttacatctccaactctcttgcatgtagTGGCGGATCATTGTGGGGGCAACCAAGTGCATCCCAAAGTCTGAACTGCCAAAGGATCAGGTAGAGGTGACAACTTTGGCAAGCACACGACTTTGGGCTCACCCCAGTGATTTGACCATAGGACTCCCAGCCAGTACACCATTGTACCCAGCTGGACGCATCATCCATGTGGTTCACAACCATCCAGCTGAGCAATGTTGgtaagtgttcctatctgtgctgttttttgcacctcttattctgggtgtgg Alignment from Exonerate_coding2genome TGGCGGATCATCGTGGGGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCTGCTGAGCAGTGCTG acttcctctcctgtgacccaggtttacatctccaactctcttgcatgtagTGGCGGATCATTGTGGGGGCAACCAAGTGCATCCCAAAGTCTGAACTGCCAAAGGATCAGGTAGAGGTGACAACTTTGGCAAGCACACGACTTTGGGCTCACCCCAGTGATTTGACCATAGGACTCCCAGCCAGTACACCATTGTACCCAGCTGGACGCATCATCCATGTGGTTCACAACCATCCAGCTGAGCAATGTTGgtaagtgttcctatctgtgctgttttttgcacctcttattctgggtgtgg Alignment from GeneWise TGGCGGATCATCGTGGGGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCTGCTGAGCAGTGCTG acttcctctcctgtgacccaggtttacatctccaactctcttgcatgtagTGGCGGATCATTGTGGGGGCAACCAAGTGCATCCCAAAGTCTGAACTGCCAAAGGATCAGGTAGAGGTGACAACTTTGGCAAGCACACGACTTTGGGCTCACCCCAGTGATTTGACCATAGGACTCCCAGCCAGTACACCATTGTACCCAGCTGGACGCATCATCCATGTGGTTCACAACCATCCAGCTGAGCAATGTTGgtaagtgttcctatctgtgctgttttttgcacctcttattctgggtgtgg #### Dagla_ID2757_13 --> 0 - 2 Original Alignment GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAag acaaaaatttactgtgcctgttattgcgtttcctatgtctcctttaccagGGGCGTGGCACCAAACACTATGGCCTAATCGTGGTAGGCCACTCCCTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACTCTCAAGTGCTTTGCTTATTCCCCACCTGGAGGGCTGCTAatgtgagcagtatgtggctttggttttggacacagtgaaaaagccctccaaa Alignment from CESAR GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAag acaaaaatttactgtgcctgttattgcgtttcctatgtctcctttaccagGGGCGTGGCACCAAACACTATGGCCTAATCGTGGTAGGCCACTCCCTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACTCTCAAGTGCTTTGCTTATTCCCCACCTGGAGGGCTGCTAatgtgagcagtatgtggctttggttttggacacagtgaaaaagccctccaaa Alignment from Spaln_aa2Genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG acaaaaatttactgtgcctgttattgcgtttcctatgtctcctttaccagGGGCGTGGCACCAAACACTATGGCCTAATCGTGGTAGGCCACTCCCTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACTCTCAAGTGCTTTGCTTATTCCCCACCTGGAGGGCTGCTAATgtgagcagtatgtggctttggttttggacacagtgaaaaagccctccaaa Alignment from Spaln_nt2Genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG acaaaaatttactgtgcctgttattgcgtttcctatgtctcctttaccagGGGCGTGGCACCAAACACTATGGCCTAATCGTGGTAGGCCACTCCCTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACTCTCAAGTGCTTTGCTTATTCCCCACCTGGAGGGCTGCTAATgtgagcagtatgtggctttggttttggacacagtgaaaaagccctccaaa Alignment from Pairagon GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG acaaaaatttactgtgcctgttattgcgtttcctatgtctcctttaccagGGGCGTGGCACCAAACACTATGGCCTAATCGTGGTAGGCCACTCCCTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACTCTCAAGTGCTTTGCTTATTCCCCACCTGGAGGGCTGCTAATgtgagcagtatgtggctttggttttggacacagtgaaaaagccctccaaa Alignment from Exonerate_protein2genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG acaaaaatttactgtgcctgttattgcgtttcctatgtctcctttaccagGGGCGTGGCACCAAACACTATGGCCTAATCGTGGTAGGCCACTCCCTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACTCTCAAGTGCTTTGCTTATTCCCCACCTGGAGGGCTGCTAATgtgagcagtatgtggctttggttttggacacagtgaaaaagccctccaaa Alignment from Exonerate_coding2genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG acaaaaatttactgtgcctgttattgcgtttcctatgtctcctttaccagGGGCGTGGCACCAAACACTATGGCCTAATCGTGGTAGGCCACTCCCTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACTCTCAAGTGCTTTGCTTATTCCCCACCTGGAGGGCTGCTAATgtgagcagtatgtggctttggttttggacacagtgaaaaagccctccaaa Alignment from GeneWise GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG acaaaaatttactgtgcctgttattgcgtttcctatgtctcctttaccagGGGCGTGGCACCAAACACTATGGCCTAATCGTGGTAGGCCACTCCCTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACTCTCAAGTGCTTTGCTTATTCCCCACCTGGAGGGCTGCTAATgtgagcagtatgtggctttggttttggacacagtgaaaaagccctccaaa #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctcttcaaggtatatctgattaaccttccttcaatccaaacaaaatacagGTTTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAAAAAGTAGTGGTCAGCATCAGGGGGAATTTATCCCCGAAAgtgcttgccattgtattcaactttacacttcacttttgttacactaccaa Alignment from CESAR GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctcttcaaggtatatctgattaaccttccttcaatccaaacaaaatacagGTTTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAAAAAGTAGTGGTCAGCATCAGGGGGAATTTATCCCCGAAAgtgcttgccattgtattcaactttacacttcacttttgttacactaccac Alignment from Spaln_aa2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctcttcaaggtatatctgattaaccttccttcaatccaaacaaaatacagGTTTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAAAAAGTAGTGGTCAGCATCAGGGGGAATTTATCCCCGAAAgtgcttgccattgtattcaactttacacttcacttttgttacactaccaa Alignment from Spaln_nt2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctcttcaaggtatatctgattaaccttccttcaatccaaacaaaatacagGTTTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAAAAAGTAGTGGTCAGCATCAGGGGGAATTTATCCCCGAAAgtgcttgccattgtattcaactttacacttcacttttgttacactaccaa Alignment from Pairagon GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCA---------------------------------------------------- ctcttcaaggtatatctgattaaccttccttcaatccaaacaaaatacagGTTTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAAAAAGTAGTGGTCAGCATCAGGGGGAATTTATCCCCGAAAGTGCTTGCCATTGTATTCAACTTTACACTTCACTTTTGTTACACTACCAA Alignment from Exonerate_protein2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctcttcaaggtatatctgattaaccttccttcaatccaaacaaaatacagGTTTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAAAAAGTAGTGGTCAGCATCAGGGGGAATTTATCCCCGAAAgtgcttgccattgtattcaactttacacttcacttttgttacactaccaa Alignment from Exonerate_coding2genome ctcttcaaggtatatctgattaaccttccttcaatccaaacaaaatacaggtttatgaaactcccttttatgttgctgttgaccatgataagaaaaaagtagtggtcagcatcagggggaatttatccccgaaagtgcttgccattgtattcaactttacacttcacttttgttacactaccaa Alignment from GeneWise GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctcttcaaggtatatctgattaaccttccttcaatccaaacaaaatacagGTTTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAAAAAGTAGTGGTCAGCATCAGGGGGAATTTATCCCCGAAAgtgcttgccattgtattcaactttacacttcacttttgttacactaccaa #### Dagla_ID2762_8 --> 0 - 2 Original Alignment CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc aaaccagatgaatcttaaaagctcttgacttgctttctgccaaactttagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTACATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCAATGTACTTGATGAGGAAGCCCACCTGTGGGCTTTGTCAATTCGCCCGGTCATGCgcgtaagatcctgttggctcctcattgaaaattaactatggtgcttaaactg Alignment from CESAR CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc aaaccagatgaatcttaaaagctcttgacttgctttctgccaaactttagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTACATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCAATGTACTTGATGAGGAAGCCCACCTGTGGGCTTTGTCAATTCGCCCGGTCATGCgcgtaagatcctgttggctcctcattgaaaattaactatggtgcttaaactg Alignment from Spaln_aa2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC aaaccagatgaatcttaaaagctcttgacttgctttctgccaaactttagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTACATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCAATGTACTTGATGAGGAAGCCCACCTGTGGGCTTTGTCAATTCGCCCGGTCATGCGCgtaagatcctgttggctcctcattgaaaattaactatggtgcttaaactg Alignment from Spaln_nt2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC aaaccagatgaatcttaaaagctcttgacttgctttctgccaaactttagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTACATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCAATGTACTTGATGAGGAAGCCCACCTGTGGGCTTTGTCAATTCGCCCGGTCATGCGCgtaagatcctgttggctcctcattgaaaattaactatggtgcttaaactg Alignment from Pairagon CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC aaaccagatgaatcttaaaagctcttgacttgctttctgccaaactttagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTACATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCAATGTACTTGATGAGGAAGCCCACCTGTGGGCTTTGTCAATTCGCCCGGTCATGCGCgtaagatcctgttggctcctcattgaaaattaactatggtgcttaaactg Alignment from Exonerate_protein2genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC aaaccagatgaatcttaaaagctcttgacttgctttctgccaaactttagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTACATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCAATGTACTTGATGAGGAAGCCCACCTGTGGGCTTTGTCAATTCGCCCGGTCATGCGCgtaagatcctgttggctcctcattgaaaattaactatggtgcttaaactg Alignment from Exonerate_coding2genome aaaccagatgaatcttaaaagctcttgacttgctttctgccaaactttagcctgagatgttacactacaaagaggtttgctattacatgctcttagctctagctgcctgtgggtggccaatgtacttgatgaggaagcccacctgtgggctttgtcaattcgcccggtcatgcgcgtaagatcctgttggctcctcattgaaaattaactatggtgcttaaactg Alignment from GeneWise CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC aaaccagatgaatcttaaaagctcttgacttgctttctgccaaactttagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTACATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCAATGTACTTGATGAGGAAGCCCACCTGTGGGCTTTGTCAATTCGCCCGGTCATGCGCgtaagatcctgttggctcctcattgaaaattaactatggtgcttaaactg #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaactaaagtggcttgtggttcagataggcacacgcccctacccccagccATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaagagaacagtttttaggactatcataggaagccttaccacagctag Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaactaaagtggcttgtggttcagataggcacacgcccctacccccagccATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaagagaacagtttttaggactatcataggaagccttaccacagctag Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaactaaagtggcttgtggttcagataggcacacgcccctacccccagCCATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaagagaacagtttttaggactatcataggaagccttaccacagctag Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaactaaagtggcttgtggttcagataggcacacgcccctacccccagCCATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaagagaacagtttttaggactatcataggaagccttaccacagctag Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaactaaagtggcttgtggttcagataggcacacgcccctacccccagCCATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaagagaacagtttttaggactatcataggaagccttaccacagctag Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaactaaagtggcttgtggttcagataggcacacgcccctacccccagCCATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaagagaacagtttttaggactatcataggaagccttaccacagctag Alignment from Exonerate_coding2genome agaaactaaagtggcttgtggttcagataggcacacgcccctacccccagccatccaggggtggttgaaagagggcccatcactgaccagcccaacccagctactctccagattgcctgtcctgctgctggagaggatgggagcttcatctggggcagtaaagagaacagtttttaggactatcataggaagccttaccacagctag Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG agaaactaaagtggcttgtggttcagataggcacacgcccctacccccagCCATCCAGGGGTGGTTGAAAGAGGGCCCATCACTGACCAGCCCAACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaagagaacagtttttaggactatcataggaagccttaccacagctag #### Dak_ID2905_8 --> 0 - 1 Original Alignment ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAg gtatggatagtaagttgagacatgctatactattttttaaaatcaaacagATAGCACCTGTTGAGCAAATAGTCACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTTCCTGTTCGGTCAggtaaagcactggcttatacagggttaataatttggagacctagaaatcct Alignment from CESAR ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAg gtatggatagtaagttgagacatgctatactattttttaaaatcaaacagATAGCACCTGTTGAGCAAATAGTCACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTTCCTGTTCGGTCAggtaaagcactggcttatacagggttaataatttggagacctagaaatcct Alignment from Spaln_aa2Genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gtatggatagtaagttgagacatgctatactattttttaaaatcaaacagATAGCACCTGTTGAGCAAATAGTCACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTTCCTGTTCGGTCAGgtaaagcactggcttatacagggttaataatttggagacctagaaatcct Alignment from Spaln_nt2Genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gtatggatagtaagttgagacatgctatactattttttaaaatcaaacagATAGCACCTGTTGAGCAAATAGTCACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTTCCTGTTCGGTCAGgtaaagcactggcttatacagggttaataatttggagacctagaaatcct Alignment from Pairagon ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gtatggatagtaagttgagacatgctatactattttttaaaatcaaacagATAGCACCTGTTGAGCAAATAGTCACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTTCCTGTTCGGTCAGgtaaagcactggcttatacagggttaataatttggagacctagaaatcct Alignment from Exonerate_protein2genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gtatggatagtaagttgagacatgctatactattttttaaaatcaaacagATAGCACCTGTTGAGCAAATAGTCACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTTCCTGTTCGGTCAGgtaaagcactggcttatacagggttaataatttggagacctagaaatcct Alignment from Exonerate_coding2genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gtatggatagtaagttgagacatgctatactattttttaaaatcaaacagATAGCACCTGTTGAGCAAATAGTCACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTTCCTGTTCGGTCAGgtaaagcactggcttatacagggttaataatttggagacctagaaatcct Alignment from GeneWise CCATGGGGAAGCTGGTGTTCGTCGGATAAAGATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gtatggatagtaagttgagACATGCTATACTATTTTTTAAAATCAAACAGATAGCACCTGTTGAGCAAATAGTCACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTTCCTGTTCGGTCAGgtaaagcactggcttatacagggttaataatttggagacctagaaatcct #### Dak_ID2908_5 --> 0 - 1 Original Alignment GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGg accctatatgttgatccaaatgccgctgctccaacccctactttccacagGTTACAGGAGCTTTAGCAGAGGATAGTATGGGGCTGGAGGAGATCACAAAAAGGGTCAGTGTCATTGCTAAGGCAATGggtcagttcaacaggcatgaagttacagcaatctattacaccccactatta Alignment from CESAR GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGg accctatatgttgatccaaatgccgctgctccaacccctactttccacagGTTACAGGAGCTTTAGCAGAGGATAGTATGGGGCTGGAGGAGATCACAAAAAGGGTCAGTGTCATTGCTAAGGCAATGggtcagttcaacaggcatgaagttacagcaatctattacaccccactatta Alignment from Spaln_aa2Genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG accctatatgttgatccaaatgccgctgctccaacccctactttccacagGTTACAGGAGCTTTAGCAGAGGATAGTATGGGGCTGGAGGAGATCACAAAAAGGGTCAGTGTCATTGCTAAGGCAATGGgtcagttcaacaggcatgaagttacagcaatctattacaccccactatta Alignment from Spaln_nt2Genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG accctatatgttgatccaaatgccgctgctccaacccctactttccacagGTTACAGGAGCTTTAGCAGAGGATAGTATGGGGCTGGAGGAGATCACAAAAAGGGTCAGTGTCATTGCTAAGGCAATGGgtcagttcaacaggcatgaagttacagcaatctattacaccccactatta Alignment from Pairagon GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG accctatatgttgatccaaatgccgctgctccaacccctactttccacagGTTACAGGAGCTTTAGCAGAGGATAGTATGGGGCTGGAGGAGATCACAAAAAGGGTCAGTGTCATTGCTAAGGCAATGGgtcagttcaacaggcatgaagttacagcaatctattacaccccactatta Alignment from Exonerate_protein2genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG accctatatgttgatccaaatgccgctgctccaacccctactttccacagGTTACAGGAGCTTTAGCAGAGGATAGTATGGGGCTGGAGGAGATCACAAAAAGGGTCAGTGTCATTGCTAAGGCAATGGgtcagttcaacaggcatgaagttacagcaatctattacaccccactatta Alignment from Exonerate_coding2genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG accctatatgttgatccaaatgccgctgctccaacccctactttccacagGTTACAGGAGCTTTAGCAGAGGATAGTATGGGGCTGGAGGAGATCACAAAAAGGGTCAGTGTCATTGCTAAGGCAATGGgtcagttcaacaggcatgaagttacagcaatctattacaccccactatta Alignment from GeneWise GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG accctatatgttgatccaaatgccgctgctccaacccctactttccacagGTTACAGGAGCTTTAGCAGAGGATAGTATGGGGCTGGAGGAGATCACAAAAAGGGTCAGTGTCATTGCTAAGGCAATGGgtcagttcaacaggcatgaagttacagcaatctattacaccccactatta #### Dclre1a_ID12123_4 --> 0 - 2 Original Alignment ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATca tctcattcaaccaaaatatgttgcgaagccttctcttgtgccctccacagATAACAGGCAATCTATTGAAGAAGAAGCTACGAGTACAAAAACAATACATGCATCAATTACCAATGGACACAGAGTGTGTTGTGGACAGTGTGAAAGTTCTTCTGCTGGATGCCAACcagtgagcgtgaaccctagcatcaatcagtggcttaacaagtttttttaggc Alignment from CESAR ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATca tctcattcaaccaaaatatgttgcgaagccttctcttgtgccctccacagATAACAGGCAATCTATTGAAGAAGAAGCTACGAGTACAAAAACAATACATGCATCAATTACCAATGGACACAGAGTGTGTTGTGGACAGTGTGAAAGTTCTTCTGCTGGATGCCAACcagtgagcgtgaaccctagcatcaatcagtggcttaacaagtttttttaggc Alignment from Spaln_aa2Genome ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA tctcattcaaccaaaatatgttgcgaagccttctcttgtgccctccacagATAACAGGCAATCTATTGAAGAAGAAGCTACGAGTACAAAAACAATACATGCATCAATTACCAATGGACACAGAGTGTGTTGTGGACAGTGTGAAAGTTCTTCTGCTGGATGCCAACCAgtgagcgtgaaccctagcatcaatcagtggcttaacaagtttttttaggc Alignment from Spaln_nt2Genome ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA tctcattcaaccaaaatatgttgcgaagccttctcttgtgccctccacagATAACAGGCAATCTATTGAAGAAGAAGCTACGAGTACAAAAACAATACATGCATCAATTACCAATGGACACAGAGTGTGTTGTGGACAGTGTGAAAGTTCTTCTGCTGGATGCCAACCAgtgagcgtgaaccctagcatcaatcagtggcttaacaagtttttttaggc Alignment from Pairagon ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA tctcattcaaccaaaatatgttgcgaagccttctcttgtgccctccacagATAACAGGCAATCTATTGAAGAAGAAGCTACGAGTACAAAAACAATACATGCATCAATTACCAATGGACACAGAGTGTGTTGTGGACAGTGTGAAAGTTCTTCTGCTGGATGCCAACCAgtgagcgtgaaccctagcatcaatcagtggcttaacaagtttttttaggc Alignment from Exonerate_protein2genome ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA tctcattcaaccaaaatatgttgcgaagccttctcttgtgccctccacagATAACAGGCAATCTATTGAAGAAGAAGCTACGAGTACAAAAACAATACATGCATCAATTACCAATGGACACAGAGTGTGTTGTGGACAGTGTGAAAGTTCTTCTGCTGGATGCCAACCAgtgagcgtgaaccctagcatcaatcagtggcttaacaagtttttttaggc Alignment from Exonerate_coding2genome ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA tctcattcaaccaaaatatgttgcgaagccttctcttgtgccctccacagATAACAGGCAATCTATTGAAGAAGAAGCTACGAGTACAAAAACAATACATGCATCAATTACCAATGGACACAGAGTGTGTTGTGGACAGTGTGAAAGTTCTTCTGCTGGATGCCAACCAgtgagcgtgaaccctagcatcaatcagtggcttaacaagtttttttaggc Alignment from GeneWise ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA tctcattcaaccaaaatatgttgcgaagccttctcttgtgccctccacagATAACAGGCAATCTATTGAAGAAGAAGCTACGAGTACAAAAACAATACATGCATCAATTACCAATGGACACAGAGTGTGTTGTGGACAGTGTGAAAGTTCTTCTGCTGGATGCCAACCAgtgagcgtgaaccctagcatcaatcagtggcttaacaagtttttttaggc #### Ddb1_ID2918_3 --> 0 - 0 Original Alignment GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG acaaaaagatctaagactttaaagcaatcgctgcttctctcctccattagGGTGAGAGCAAAGATCTGTTATTCATTTTGATTGCTAAGTATAATGCCTGTATCTTAGAGTATAAGGAGAGTAGTGAAAGCATTGACATTATTGCACGGGCCCATGGCAATGTCCAGgtgtgtctccaattttaaactgatgatcccctgcaaaagtgaaaaaagat Alignment from CESAR GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG acaaaaagatctaagactttaaagcaatcgctgcttctctcctccattagGGTGAGAGCAAAGATCTGTTATTCATTTTGATTGCTAAGTATAATGCCTGTATCTTAGAGTATAAGGAGAGTAGTGAAAGCATTGACATTATTGCACGGGCCCATGGCAATGTCCAGgtgtgtctccaattttaaactgatgatcccctgcaaaagtgaaaaaagat Alignment from Spaln_aa2Genome GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG acaaaaagatctaagactttaaagcaatcgctgcttctctcctccattagGGTGAGAGCAAAGATCTGTTATTCATTTTGATTGCTAAGTATAATGCCTGTATCTTAGAGTATAAGGAGAGTAGTGAAAGCATTGACATTATTGCACGGGCCCATGGCAATGTCCAGgtgtgtctccaattttaaactgatgatcccctgcaaaagtgaaaaaagat Alignment from Spaln_nt2Genome GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG acaaaaagatctaagactttaaagcaatcgctgcttctctcctccattagGGTGAGAGCAAAGATCTGTTATTCATTTTGATTGCTAAGTATAATGCCTGTATCTTAGAGTATAAGGAGAGTAGTGAAAGCATTGACATTATTGCACGGGCCCATGGCAATGTCCAGgtgtgtctccaattttaaactgatgatcccctgcaaaagtgaaaaaagat Alignment from Pairagon GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG acaaaaagatctaagactttaaagcaatcgctgcttctctcctccattagGGTGAGAGCAAAGATCTGTTATTCATTTTGATTGCTAAGTATAATGCCTGTATCTTAGAGTATAAGGAGAGTAGTGAAAGCATTGACATTATTGCACGGGCCCATGGCAATGTCCAGgtgtgtctccaattttaaactgatgatcccctgcaaaagtgaaaaaagat Alignment from Exonerate_protein2genome GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG acaaaaagatctaagactttaaagcaatcgctgcttctctcctccattagGGTGAGAGCAAAGATCTGTTATTCATTTTGATTGCTAAGTATAATGCCTGTATCTTAGAGTATAAGGAGAGTAGTGAAAGCATTGACATTATTGCACGGGCCCATGGCAATGTCCAGgtgtgtctccaattttaaactgatgatcccctgcaaaagtgaaaaaagat Alignment from Exonerate_coding2genome GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG acaaaaagatctaagactttaaagcaatcgctgcttctctcctccattagGGTGAGAGCAAAGATCTGTTATTCATTTTGATTGCTAAGTATAATGCCTGTATCTTAGAGTATAAGGAGAGTAGTGAAAGCATTGACATTATTGCACGGGCCCATGGCAATGTCCAGgtgtgtctccaattttaaactgatgatcccctgcaaaagtgaaaaaagat Alignment from GeneWise GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG acaaaaagatctaagactttaaagcaatcgctgcttctctcctccattagGGTGAGAGCAAAGATCTGTTATTCATTTTGATTGCTAAGTATAATGCCTGTATCTTAGAGTATAAGGAGAGTAGTGAAAGCATTGACATTATTGCACGGGCCCATGGCAATGTCCAGgtgtgtctccaattttaaactgatgatcccctgcaaaagtgaaaaaagat #### Ddb1_ID2919_4 --> 0 - 0 Original Alignment GACCGCATTGGTCGCCCCTCGGAGACTGGCATCATTGGCATCATTGACCCTGAGTGCCGTATGATTGGCCTTCGACTCTACGATGGCCTTTTCAAGGTCATTCCACTAGACCGAGACAATAAAGAGCTCAAGGCCTTTAACATCCGCCTAGAGGAA------------CTGCACGTCATTGATGTCAAGTTCCTGTATGGTTGTCAAGCACCTACCATTTGCTTTGTCTACCAG cacacccctgtccaggcgcaccatggttaaatttcttccttctatcacagGACCATATTGGCCGTCCATCAGAAACTAGTATAATTGGTATT---GACTCCAAGTGCCGTATCATCAGCCTGAGACTTTATGATGGCCTATTTGAGGTCATCCCATTA---GGAGACAATGAAGAGTTAGAGGCTTTCAATATCCGCTTAGAAGATCCCTTGAGGGGATTT---GCCAGTGATGTTAAACTTTTATATGGCTGCCAAGTACCCACAATCTGCATTGCCTATGAGgtgagttcactaggagaaattcaagagttggttttgaacagttagtggaa Alignment from CESAR GACCGCATTGGTCGCCCCTCGGAGACTGGCATCATTGGCATCATTGACCCTGAGTGCCGTATGATTGGCCTTCGACTCTACGATGGCCTTTTCAAGGTCATTCCACTAGACCGAGACAATAAAGAGCTCAAGGCCTTTAACATCCGCCTAGAGGAA---CTGCAC------GTCATTGATGTCAAGTTCCTGTATGGTTGTCAAGCACCTACCATTTGCTTTGTCTACCAG cacacccctgtccaggcgcaccatggttaaatttcttccttctatcacagGACCATATTGGCCGTCCATCAGAAACTAGTATAATTGGT---ATTGACTCCAAGTGCCGTATCATCAGCCTGAGACTTTATGATGGCCTATTTGAGGTCATCCCATTAGGA---GACAATGAAGAGTTAGAGGCTTTCAATATCCGCTTAGAAGATCCCTTGAGGGGATTTGCCAGTGATGTTAAACTTTTATATGGCTGCCAAGTACCCACAATCTGCATTGCCTATGAGgtgagttcactaggagaaattcaagagttggttttgaacagttagtggaa Alignment from Spaln_aa2Genome GACCGCATTGGTCGCCCCTCGGAGACTGGCATCATTGGCATCATTGACCCTGAGTGCCGTATGATTGGCCTTCGACTCTACGATGGCCTTTTCAAGGTCATTCCACTAGACCGAGACAATAAAGAGCTCAAGGCCTTTAACATCCGCCTAGAGGAACTG---------CACGTCATTGATGTCAAGTTCCTGTATGGTTGTCAAGCACCTACCATTTGCTTTGTCTACCAG cacacccctgtccaggcgcaccatggttaaatttcttccttctatcacagGACCATATTGGCCGTCCATCAGAAACTAGTATAATTGGT---ATTGACTCCAAGTGCCGTATCATCAGCCTGAGACTTTATGATGGCCTATTTGAGGTCATCCCATTAGGA---GACAATGAAGAGTTAGAGGCTTTCAATATCCGCTTAGAAGATCCCTTGAGGGGATTTGCCAGTGATGTTAAACTTTTATATGGCTGCCAAGTACCCACAATCTGCATTGCCTATGAGgtgagttcactaggagaaattcaagagttggttttgaacagttagtggaa Alignment from Spaln_nt2Genome GACCGCATTGGTCGCCCCTCGGAGACTGGCATCATTGGCATCATTGACCCTGAGTGCCGTATGATTGGCCTTCGACTCTACGATGGCCTTTTCAAGGTCATTCCACTAGACCGAGACAATAAAGAGCTCAAGGCCTTTAACATCCGCCTAGAGGAAC--TGCACGTCATT-------GATGTCAAGTTCCTGTATGGTTGTCAAGCACCTACCATTTGCTTTGTCTACCAG cacacccctgtccaggcgcaccatggttaaatttcttccttctatcacagGACCATATTGGCCGTCCATCAGAAACTAGTATAATTGG---TATTGACTCCAAGTGCCGTATCATCAGCCTGAGACTTTATGATGGCCTATTTGAGGTCATCCCATTAG---GAGACAATGAAGAGTTAGAGGCTTTCAATATCCGCTTAGAAGATCCCTTGAGGGGATTTGCCAGTGATGTTAAACTTTTATATGGCTGCCAAGTACCCACAATCTGCATTGCCTATGAGgtgagttcactaggagaaattcaagagttggttttgaacagttagtggaa Alignment from Pairagon GACCGCATTGGTCGCCCCTCGGAGACTGGCATCATTGGCATCATTGACCCTGAGTGCCGTATGATTGGCCTTCGACTCTACGATGGCCTTTTCAAGGTCATTCCACTAGACCGAGACAATAAAGAGCTCAAGGCCTTTAACATCCGCCTAGA-------------GGAACTGCACGTCATTGATGTCAAGTTCCTGTATGGTTGTCAAGCACCTACCATTTGCTTTGTCTACCAG cacacccctgtccaggcgcaccatggttaaatttcttccttctatcacagGACCATATTGGCCGTCCATCAGAAACTAGTATAATTGG---TATTGACTCCAAGTGCCGTATCATCAGCCTGAGACTTTATGATGGCCTATTTGAGGTCATCCCATTAG---GAGACAATGAAGAGTTAGAGGCTTTCAATATCCGCTTAGAAGATCCCTTGAGGGGATTTGC----CAGTGATGTTAAACTTTTATATGGCTGCCAAGTACCCACAATCTGCATTGCCTATGAGgtgagttcactaggagaaattcaagagttggttttgaacagttagtggaa Alignment from Exonerate_protein2genome GACCGCATTGGTCGCCCCTCGGAGACTGGCATCATTGGCATCATTGACCCTGAGTGCCGTATGATTGGCCTTCGACTCTACGATGGCCTTTTCAAGGTCATTCCACTAGACCGAGACAATAAAGAGCTCAAGGCCTTTAACATCCGCCTAGAGGAACTG---------CACGTCATTGATGTCAAGTTCCTGTATGGTTGTCAAGCACCTACCATTTGCTTTGTCTACCAG cacacccctgtccaggcgcaccatggttaaatttcttccttctatcacagGACCATATTGGCCGTCCATCAGAAACTAGTATAATTGGT---ATTGACTCCAAGTGCCGTATCATCAGCCTGAGACTTTATGATGGCCTATTTGAGGTCATCCCATTAGGA---GACAATGAAGAGTTAGAGGCTTTCAATATCCGCTTAGAAGATCCCTTGAGGGGATTTGCCAGTGATGTTAAACTTTTATATGGCTGCCAAGTACCCACAATCTGCATTGCCTATGAGgtgagttcactaggagaaattcaagagttggttttgaacagttagtggaa Alignment from Exonerate_coding2genome GACCGCATTGGTCGCCCCTCGGAGACTGGCATCATTGGCATCATTGACCCTGAGTGCCGTATGATTGGCCTTCGACTCTACGATGGCCTTTTCAAGGTCATTCCACTAGACCGAGACAATAAAGAGCTCAAGGCCTTTAACATCCGCCTAGAGGAACTG---------CACGTCATTGATGTCAAGTTCCTGTATGGTTGTCAAGCACCTACCATTTGCTTTGTCTACCAG cacacccctgtccaggcgcaccatggttaaatttcttccttctatcacagGACCATATTGGCCGTCCATCAGAAACTAGTATAATTGGT---ATTGACTCCAAGTGCCGTATCATCAGCCTGAGACTTTATGATGGCCTATTTGAGGTCATCCCATTAGGA---GACAATGAAGAGTTAGAGGCTTTCAATATCCGCTTAGAAGATCCCTTGAGGGGATTTGCCAGTGATGTTAAACTTTTATATGGCTGCCAAGTACCCACAATCTGCATTGCCTATGAGgtgagttcactaggagaaattcaagagttggttttgaacagttagtggaa Alignment from GeneWise GACCGCATTGGTCGCCCCTCGGAGACTGGCATCATTGGCATCATTGACCCTGAGTGCCGTATGATTGGCCTTCGACTCTACGATGGCCTTTTCAAGGTCATTCCACTAGACCGAGACAATAAAGAGCTCAAGGCCTTTAACATCCGCCTAGAGGAACTG---------CACGTCATTGATGTCAAGTTCCTGTATGGTTGTCAAGCACCTACCATTTGCTTTGTCTACCAG cacacccctgtccaggcgcaccatggttaaatttcttccttctatcacagGACCATATTGGCCGTCCATCAGAAACTAGTATAATTGGT---ATTGACTCCAAGTGCCGTATCATCAGCCTGAGACTTTATGATGGCCTATTTGAGGTCATCCCATTAGGA---GACAATGAAGAGTTAGAGGCTTTCAATATCCGCTTAGAAGATCCCTTGAGGGGATTTGCCAGTGATGTTAAACTTTTATATGGCTGCCAAGTACCCACAATCTGCATTGCCTATGAGgtgagttcactaggagaaattcaagagttggttttgaacagttagtggaa #### Ddb1_ID2920_5 --> 0 - 1 Original Alignment GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg caaaaacatgatgctgatgccttttcaatgataccttgtttatcttgtagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACAGTAACAGCAggtaagtggcctagattctaggtctgaaagacttctctcccaatgcctcct Alignment from CESAR GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAG---------TTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg caaaaacatgatgctgatgccttttcaatgataccttgtttatcttgtagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACAGTAACAGCAggtaagtggcctagattctaggtctgaaagacttctctcccaatgcctcct Alignment from Spaln_aa2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caaaaacatgatgctgatgccttttcaatgataccttgtttatcttgtagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACAGTAACAGCAGgtaagtggcctagattctaggtctgaaagacttctctcccaatgcctcct Alignment from Spaln_nt2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTT---------CAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caaaaacatgatgctgatgccttttcaatgataccttgtttatcttgtagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACAGTAACAGCAGgtaagtggcctagattctaggtctgaaagacttctctcccaatgcctcct Alignment from Pairagon GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGA---------AGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caaaaacatgatgctgatgccttttcaatgataccttgtttatcttgtagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACAGTAACAGCAGgtaagtggcctagattctaggtctgaaagacttctctcccaatgcctcct Alignment from Exonerate_protein2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caaaaacatgatgctgatgccttttcaatgataccttgtttatcttgtagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACAGTAACAGCAGgtaagtggcctagattctaggtctgaaagacttctctcccaatgcctcct Alignment from Exonerate_coding2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caaaaacatgatgctgatgccttttcaatgataccttgtttatcttgtagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACAGTAACAGCAGgtaagtggcctagattctaggtctgaaagacttctctcccaatgcctcct Alignment from GeneWise GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAG---------TTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caaaaacatgatgctgatgccttttcaatgataccttgtttatcttgtagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACAGTAACAGCAGgtaagtggcctagattctaggtctgaaagacttctctcccaatgcctcct #### Ddb1_ID2921_6 --> 2 - 0 Original Alignment tcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagactatttgaaaagggtccttagtgttttgtttgtcttccttcagtcCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAAGTGCTCCTCCAATCATTAAGgtgagcatagcgtccatatgtcactctgtttcatctacaggctatagttt Alignment from CESAR tcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagactatttgaaaagggtccttagtgttttgtttgtcttccttcagtcCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAAGTGCTCCTCCAATCATTAAGgtgagcatagcgtccatatgtcactctgtttcatctacaggctatagttt Alignment from Spaln_aa2Genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagactatttgaaaagggtccttagtgttttgtttgtcttccttcagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAAGTGCTCCTCCAATCATTAAGgtgagcatagcgtccatatgtcactctgtttcatctacaggctatagttt Alignment from Spaln_nt2Genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagactatttgaaaagggtccttagtgttttgtttgtcttccttcagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAAGTGCTCCTCCAATCATTAAGgtgagcatagcgtccatatgtcactctgtttcatctacaggctatagttt Alignment from Pairagon TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagactatttgaaaagggtccttagtgttttgtttgtcttccttcagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAAGTGCTCCTCCAATCATTAAGgtgagcatagcgtccatatgtcactctgtttcatctacaggctatagttt Alignment from Exonerate_protein2genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagactatttgaaaagggtccttagtgttttgtttgtcttccttcagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAAGTGCTCCTCCAATCATTAAGgtgagcatagcgtccatatgtcactctgtttcatctacaggctatagttt Alignment from Exonerate_coding2genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagactatttgaaaagggtccttagtgttttgtttgtcttccttcagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAAGTGCTCCTCCAATCATTAAGgtgagcatagcgtccatatgtcactctgtttcatctacaggctatagttt Alignment from GeneWise TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagactatttgaaaagggtccttagtgttttgtttgtcttccttcagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAAGTGCTCCTCCAATCATTAAGgtgagcatagcgtccatatgtcactctgtttcatctacaggctatagttt #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg tgtcaggcacttgtttctttgtttattgtgttttctttacttttgggcagtCACACAGAAATGGAACATGAAGTAGCATGTCTGGACACTACCCCGTTAGGGGATAGCAATGGTCTCTCCCTGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCATCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAggtaaaccttttgtttatcctcaagacaacagcccagtcagggtgaacaag Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg tgtcaggcacttgtttctttgtttattgtgttttctttacttttgggcagtCACACAGAAATGGAACATGAAGTAGCATGTCTGGACACTACCCCGTTAGGGGATAGCAATGGTCTCTCCCTGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCATCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAggtaaaccttttgtttatcctcaagacaacagcccagtcagggtgaacaag Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtcaggcacttgtttctttgtttattgtgttttctttacttttgggcagTCACACAGAAATGGAACATGAAGTAGCATGTCTGGACACTACCCCGTTAGGGGATAGCAATGGTCTCTCCCTGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCATCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaaaccttttgtttatcctcaagacaacagcccagtcagggtgaacaag Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtcaggcacttgtttctttgtttattgtgttttctttacttttgggcagTCACACAGAAATGGAACATGAAGTAGCATGTCTGGACACTACCCCGTTAGGGGATAGCAATGGTCTCTCCCTGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCATCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaaaccttttgtttatcctcaagacaacagcccagtcagggtgaacaag Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtcaggcacttgtttctttgtttattgtgttttctttacttttgggcagTCACACAGAAATGGAACATGAAGTAGCATGTCTGGACACTACCCCGTTAGGGGATAGCAATGGTCTCTCCCTGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCATCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaaaccttttgtttatcctcaagacaacagcccagtcagggtgaacaag Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtcaggcacttgtttctttgtttattgtgttttctttacttttgggcagTCACACAGAAATGGAACATGAAGTAGCATGTCTGGACACTACCCCGTTAGGGGATAGCAATGGTCTCTCCCTGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCATCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaaaccttttgtttatcctcaagacaacagcccagtcagggtgaacaag Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtcaggcacttgtttctttgtttattgtgttttctttacttttgggcagTCACACAGAAATGGAACATGAAGTAGCATGTCTGGACACTACCCCGTTAGGGGATAGCAATGGTCTCTCCCTGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCATCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaaaccttttgtttatcctcaagacaacagcccagtcagggtgaacaag Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtcaggcacttgtttctttgtttattgtgttttctttacttttgggcagTCACACAGAAATGGAACATGAAGTAGCATGTCTGGACACTACCCCGTTAGGGGATAGCAATGGTCTCTCCCTGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCATCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaaaccttttgtttatcctcaagacaacagcccagtcagggtgaacaag #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag aattccaccctattttattttatttccctcgtgcttccctggtgtttcaggtTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCGGATGGCTATCCTGACaggtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag aattccaccctattttattttatttccctcgtgcttccctggtgtttcaggtTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCGGATGGCTATCCTGACaggtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG aattccaccctattttattttatttccctcgtgcttccctggtgtttcagGTTTATTGAGCGACCGTAAAAAGGTAACATTGGGCACCCAGCCCACTGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGTAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCGGATGGCTATCCTGACAGgtaagtgttcctaggtgtcgcaagagaggttacatatcattttttgattc #### Ddb1_ID2940_25 --> 2 - 2 Original Alignment ggCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTGGGCAAGATTGAGCACTCCtt tgcaaaaaagcttgcttctgcaaaaaagttttcctttggactttactcagggCTGGTCACCTCACTGTCAAAGAGCTGGTACAACCTCCTCTCGGATATGCAGAACCAGCTGAATCAGGTAATTAAGAGTGTGGGCAAAAATGAGCACTCTttgtaagttctctctgcagccacagattgttctcaacaggagctgacactgc Alignment from CESAR ggCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTGGGCAAGATTGAGCACTCCtt tgcaaaaaagcttgcttctgcaaaaaagttttcctttggactttactcagggCTGGTCACCTCACTGTCAAAGAGCTGGTACAACCTCCTCTCGGATATGCAGAACCAGCTGAATCAGGTAATTAAGAGTGTGGGCAAAAATGAGCACTCTttgtaagttctctctgcagccacagattgttctcaacaggagctgacactgc Alignment from Spaln_aa2Genome GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTGGGCAAGATTGAGCACTCCTT tgcaaaaaagcttgcttctgcaaaaaagttttcctttggactttactcagGGCTGGTCACCTCACTGTCAAAGAGCTGGTACAACCTCCTCTCGGATATGCAGAACCAGCTGAATCAGGTAATTAAGAGTGTGGGCAAAAATGAGCACTCTTTgtaagttctctctgcagccacagattgttctcaacaggagctgacactgc Alignment from Spaln_nt2Genome GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTGGGCAAGATTGAGCACTCCTT tgcaaaaaagcttgcttctgcaaaaaagttttcctttggactttactcagGGCTGGTCACCTCACTGTCAAAGAGCTGGTACAACCTCCTCTCGGATATGCAGAACCAGCTGAATCAGGTAATTAAGAGTGTGGGCAAAAATGAGCACTCTTTgtaagttctctctgcagccacagattgttctcaacaggagctgacactgc Alignment from Pairagon GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTGGGCAAGATTGAGCACTCCTT tgcaaaaaagcttgcttctgcaaaaaagttttcctttggactttactcagGGCTGGTCACCTCACTGTCAAAGAGCTGGTACAACCTCCTCTCGGATATGCAGAACCAGCTGAATCAGGTAATTAAGAGTGTGGGCAAAAATGAGCACTCTTTgtaagttctctctgcagccacagattgttctcaacaggagctgacactgc Alignment from Exonerate_protein2genome GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTGGGCAAGATTGAGCACTCCTT tgcaaaaaagcttgcttctgcaaaaaagttttcctttggactttactcagGGCTGGTCACCTCACTGTCAAAGAGCTGGTACAACCTCCTCTCGGATATGCAGAACCAGCTGAATCAGGTAATTAAGAGTGTGGGCAAAAATGAGCACTCTTTgtaagttctctctgcagccacagattgttctcaacaggagctgacactgc Alignment from Exonerate_coding2genome tgcaaaaaagcttgcttctgcaaaaaagttttcctttggactttactcagggctggtcacctcactgtcaaagagctggtacaacctcctctcggatatgcagaaccagctgaatcaggtaattaagagtgtgggcaaaaatgagcactctttgtaagttctctctgcagccacagattgttctcaacaggagctgacactgc Alignment from GeneWise GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTGGGCAAGATTGAGCACTCCTT tgcaaaaaagcttgcttctgcaaaaaagttttcctttggactttactcagGGCTGGTCACCTCACTGTCAAAGAGCTGGTACAACCTCCTCTCGGATATGCAGAACCAGCTGAATCAGGTAATTAAGAGTGTGGGCAAAAATGAGCACTCTTTgtaagttctctctgcagccacagattgttctcaacaggagctgacactgc #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcaggcATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATGGATTTCCCAGA---ACTGCATTGGCATCAAAGATTTATCATACTAAAggtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcaggcATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATGGATTTCCC---AGAACTGCATTGGCATCAAAGATTTATCATACTAAAggtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATGGATTTCCC---AGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATGGATTTCCC---AGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATGGATTTCCC---AGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATGGATTTCCC---AGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATGGATTTCCC---AGAACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcaggtatggaacaccccattgattttttttttctgatgcagGCATATGCATGCCATCCAGGCAAAGCCACTTCCCATGTGGGGAAGTCAGGGAGAGGTCTGTTGAAATGCTTGGCATTGACCACAATGCTGCCGCAGGGGATGGATTTCCCAGA---ACTGCATTGGCATCAAAGATTTATCATACTAAAGgtgagtggacagtggaagaactttgcattgcatctgcaaaaacaatgaga #### Dmrt1_ID5475_2 --> 0 - 1 Original Alignment GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg gtgcattgatcgggtcttactcactttattctttgtgtgcttgttactagGTTGGTTTGAGGAGGCAGCAGGCACAGGAAGAGGACCTTGGTATCAGCCACCCAATACCTCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGATTAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGTTCAGCTCAGCCCCCACCAGCCAGTACCCCTACCCCTGCAGCCTCAggtaagtaaagatggctcacagtttgggactgtgtggtgggctaagaagtt Alignment from CESAR GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg gtgcattgatcgggtcttactcactttattctttgtgtgcttgttactagGTTGGTTTGAGGAGGCAGCAGGCACAGGAAGAGGACCTTGGTATCAGCCACCCAATACCTCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGATTAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGTTCAGCTCAGCCCCCACCAGCCAGTACCCCTACCCCTGCAGCCTCAggtaagtaaagatggctcacagtttgggactgtgtggtgggctaagaagtt Alignment from Spaln_aa2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG gtgcattgatcgggtcttactcactttattctttgtgtgcttgttactagGTTGGTTTGAGGAGGCAGCAGGCACAGGAAGAGGACCTTGGTATCAGCCACCCAATACCTCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGATTAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGTTCAGCTCAGCCCCCACCAGCCAGTACCCCTACCCCTGCAGCCTCAGgtaagtaaagatggctcacagtttgggactgtgtggtgggctaagaagtt Alignment from Spaln_nt2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG gtgcattgatcgggtcttactcactttattctttgtgtgcttgttactagGTTGGTTTGAGGAGGCAGCAGGCACAGGAAGAGGACCTTGGTATCAGCCACCCAATACCTCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGATTAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGTTCAGCTCAGCCCCCACCAGCCAGTACCCCTACCCCTGCAGCCTCAGgtaagtaaagatggctcacagtttgggactgtgtggtgggctaagaagtt Alignment from Pairagon GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG gtgcattgatcgggtcttactcactttattctttgtgtgcttgttactagGTTGGTTTGAGGAGGCAGCAGGCACAGGAAGAGGACCTTGGTATCAGCCACCCAATACCTCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGATTAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGTTCAGCTCAGCCCCCACCAGCCAGTACCCCTACCCCTGCAGCCTCAGgtaagtaaagatggctcacagtttgggactgtgtggtgggctaagaagtt Alignment from Exonerate_protein2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG gtgcattgatcgggtcttactcactttattctttgtgtgcttgttactagGTTGGTTTGAGGAGGCAGCAGGCACAGGAAGAGGACCTTGGTATCAGCCACCCAATACCTCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGATTAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGTTCAGCTCAGCCCCCACCAGCCAGTACCCCTACCCCTGCAGCCTCAGgtaagtaaagatggctcacagtttgggactgtgtggtgggctaagaagtt Alignment from Exonerate_coding2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG gtgcattgatcgggtcttactcactttattctttgtgtgcttgttactagGTTGGTTTGAGGAGGCAGCAGGCACAGGAAGAGGACCTTGGTATCAGCCACCCAATACCTCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGATTAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGTTCAGCTCAGCCCCCACCAGCCAGTACCCCTACCCCTGCAGCCTCAGgtaagtaaagatggctcacagtttgggactgtgtggtgggctaagaagtt Alignment from GeneWise GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG gtgcattgatcgggtcttactcactttattctttgtgtgcttgttactagGTTGGTTTGAGGAGGCAGCAGGCACAGGAAGAGGACCTTGGTATCAGCCACCCAATACCTCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGATTAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGTTCAGCTCAGCCCCCACCAGCCAGTACCCCTACCCCTGCAGCCTCAGgtaagtaaagatggctcacagtttgggactgtgtggtgggctaagaagtt #### Dmrt1_ID5483_3 --> 2 - 0 Original Alignment agGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccctactagtgcacgtgacctagctggacaacctcctggtccctccacagagGAGCGCATGGTCATACAGGACATTTCAACTGTATCCAGCAGGGGAGATATGGAAAACATTTCTGACCTGGTCTCTGACCCTGCTTGCTACAGTAGCTTTTATCAGCCTTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAATATTCAATGGCCCTATGTGCTGAATCCTCATCAGGGGAGGTGGGCAATTCATTTGGAGGGTCCCCTCTAAAAAACACCATACGAGGTTTGGCAGCGCCATATGTACCTGATCGGACAGGAAACCAGTGGCAGgtacggtataatctggtaaagtagtcgacaccagcatataatgtgggtat Alignment from CESAR agGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccctactagtgcacgtgacctagctggacaacctcctggtccctccacagagGAGCGCATGGTCATACAGGACATTTCAACTGTATCCAGCAGGGGAGATATGGAAAACATTTCTGACCTGGTCTCTGACCCTGCTTGCTACAGTAGCTTTTATCAGCCTTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAATATTCAATGGCCCTATGTGCTGAATCCTCATCAGGGGAGGTGGGCAATTCATTTGGAGGGTCCCCTCTAAAAAACACCATACGAGGTTTGGCAGCGCCATATGTACCTGATCGGACAGGAAACCAGTGGCAGgtacggtataatctggtaaagtagtcgacaccagcatataatgtgggtat Alignment from Spaln_aa2Genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccctactagtgcacgtgacctagctggacaacctcctggtccctccacagAGGAGCGCATGGTCATACAGGACATTTCAACTGTATCCAGCAGGGGAGATATGGAAAACATTTCTGACCTGGTCTCTGACCCTGCTTGCTACAGTAGCTTTTATCAGCCTTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAATATTCAATGGCCCTATGTGCTGAATCCTCATCAGGGGAGGTGGGCAATTCATTTGGAGGGTCCCCTCTAAAAAACACCATACGAGGTTTGGCAGCGCCATATGTACCTGATCGGACAGGAAACCAGTGGCAGgtacggtataatctggtaaagtagtcgacaccagcatataatgtgggtat Alignment from Spaln_nt2Genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccctactagtgcacgtgacctagctggacaacctcctggtccctccacagAGGAGCGCATGGTCATACAGGACATTTCAACTGTATCCAGCAGGGGAGATATGGAAAACATTTCTGACCTGGTCTCTGACCCTGCTTGCTACAGTAGCTTTTATCAGCCTTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAATATTCAATGGCCCTATGTGCTGAATCCTCATCAGGGGAGGTGGGCAATTCATTTGGAGGGTCCCCTCTAAAAAACACCATACGAGGTTTGGCAGCGCCATATGTACCTGATCGGACAGGAAACCAGTGGCAGgtacggtataatctggtaaagtagtcgacaccagcatataatgtgggtat Alignment from Pairagon AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccctactagtgcacgtgacctagctggacaacctcctggtccctccacagAGGAGCGCATGGTCATACAGGACATTTCAACTGTATCCAGCAGGGGAGATATGGAAAACATTTCTGACCTGGTCTCTGACCCTGCTTGCTACAGTAGCTTTTATCAGCCTTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAATATTCAATGGCCCTATGTGCTGAATCCTCATCAGGGGAGGTGGGCAATTCATTTGGAGGGTCCCCTCTAAAAAACACCATACGAGGTTTGGCAGCGCCATATGTACCTGATCGGACAGGAAACCAGTGGCAGgtacggtataatctggtaaagtagtcgacaccagcatataatgtgggtat Alignment from Exonerate_protein2genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccctactagtgcacgtgacctagctggacaacctcctggtccctccacagAGGAGCGCATGGTCATACAGGACATTTCAACTGTATCCAGCAGGGGAGATATGGAAAACATTTCTGACCTGGTCTCTGACCCTGCTTGCTACAGTAGCTTTTATCAGCCTTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAATATTCAATGGCCCTATGTGCTGAATCCTCATCAGGGGAGGTGGGCAATTCATTTGGAGGGTCCCCTCTAAAAAACACCATACGAGGTTTGGCAGCGCCATATGTACCTGATCGGACAGGAAACCAGTGGCAGgtacggtataatctggtaaagtagtcgacaccagcatataatgtgggtat Alignment from Exonerate_coding2genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccctactagtgcacgtgacctagctggacaacctcctggtccctccacagAGGAGCGCATGGTCATACAGGACATTTCAACTGTATCCAGCAGGGGAGATATGGAAAACATTTCTGACCTGGTCTCTGACCCTGCTTGCTACAGTAGCTTTTATCAGCCTTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAATATTCAATGGCCCTATGTGCTGAATCCTCATCAGGGGAGGTGGGCAATTCATTTGGAGGGTCCCCTCTAAAAAACACCATACGAGGTTTGGCAGCGCCATATGTACCTGATCGGACAGGAAACCAGTGGCAGgtacggtataatctggtaaagtagtcgacaccagcatataatgtgggtat Alignment from GeneWise AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccctactagtgcacgtgacctagctggacaacctcctggtccctccacagAGGAGCGCATGGTCATACAGGACATTTCAACTGTATCCAGCAGGGGAGATATGGAAAACATTTCTGACCTGGTCTCTGACCCTGCTTGCTACAGTAGCTTTTATCAGCCTTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAATATTCAATGGCCCTATGTGCTGAATCCTCATCAGGGGAGGTGGGCAATTCATTTGGAGGGTCCCCTCTAAAAAACACCATACGAGGTTTGGCAGCGCCATATGTACCTGATCGGACAGGAAACCAGTGGCAGgtacggtataatctggtaaagtagtcgacaccagcatataatgtgggtat #### Dnmbp_ID8853_13 --> 0 - 1 Original Alignment CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAg tggcatgactacaaacaacaaatcctcttgtgccccgcttccttctgtagGCAATCTACACAGACCAGTCAGAAGAGTTACATAGCTCCCTTCTGGCAAGACATCCGTTAGGGAAGCTGTTCCATGTCCAGCAAAACTTT---GCTGTCCAGGACTTGGATGTTTTCCTTTTGGAGGATGACCTAATAGGTGAGATTAAAAAGAAAGACTCCATGGGGAGCCAGAACCATTGGCTTGTTGAT---AGGggtaaggctcatacctgcatttacagattatgcacacagtgccagaagcaa Alignment from CESAR CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAg tggcatgactacaaacaacaaatcctcttgtgccccgcttccttctgtagGCAATCTACACAGACCAGTCAGAAGAGTTACATAGCTCCCTTCTGGCAAGACATCCGTTAGGGAAGCTGTTCCATGTCCAGCAAAACTTT---GCTGTCCAGGACTTGGATGTTTTCCTTTTGGAGGATGACCTAATAGGTGAGATTAAAAAGAAAGACTCCATGGGGAGCCAGAACCATTGGCTTGTTGAT---AGGggtaaggctcatacctgcatttacagattatgcacacagtgccagaagcaa Alignment from Spaln_aa2Genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tggcatgactacaaacaacaaatcctcttgtgccccgcttccttctgtagGCAATCTACACAGACCAGTCAGAAGAGTTACATAGCTCCCTTCTGGCAAGACATCCGTTAGGGAAGCTGTTCCATGTCCAGCAAAACTTT---GCTGTCCAGGACTTGGATGTTTTCCTTTTGGAGGATGACCTAATAGGTGAGATTAAAAAGAAAGACTCCATGGGGAGCCAGAACCATTGGCTTGTTGAT---AGGGgtaaggctcatacctgcatttacagattatgcacacagtgccagaagcaa Alignment from Spaln_nt2Genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tggcatgactacaaacaacaaatcctcttgtgccccgcttccttctgtagGCAATCTACACAGACCAGTCAGAAGAGTTACATAGCTCCCTTCTGGCAAGACATCCGTTAGGGAAGCTGTTCCATGTCCAGCAAAACTT---TGCTGTCCAGGACTTGGATGTTTTCCTTTTGGAGGATGACCTAATAGGTGAGATTAAAAAGAAAGACTCCATGGGGAGCCAGAACCATTGGCTTGTTGATA---GGGgtaaggctcatacctgcatttacagattatgcacacagtgccagaagcaa Alignment from Pairagon CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tggcatgactacaaacaacaaatcctcttgtgccccgcttccttctgtagGCAATCTACACAGACCAGTCAGAAGAGTTACATAGCTCCCTTCTGGCAAGACATCCGTTAGGGAAGCTGTTCCATGTCCAGCAAAACTT---TGCTGTCCAGGACTTGGATGTTTTCCTTTTGGAGGATGACCTAATAGGTGAGATTAAAAAGAAAGACTCCATGGGGAGCCAGAACCATTGGCTTGTTGATA---GGGgtaaggctcatacctgcatttacagattatgcacacagtgccagaagcaa Alignment from Exonerate_protein2genome tggcatgactacaaacaacaaatcctcttgtgccccgcttccttctgtaggcaatctacacagaccagtcagaagagttacatagctcccttctggcaagacatccgttagggaagctgttccatgtccagcaaaactttgctgtccaggacttggatgttttccttttggaggatgacctaataggtgagattaaaaagaaagactccatggggagccagaaccattggcttgttgataggggtaaggctcatacctgcatttacagattatgcacacagtgccagaagcaa Alignment from Exonerate_coding2genome tggcatgactacaaacaacaaatcctcttgtgccccgcttccttctgtaggcaatctacacagaccagtcagaagagttacatagctcccttctggcaagacatccgttagggaagctgttccatgtccagcaaaactttgctgtccaggacttggatgttttccttttggaggatgacctaataggtgagattaaaaagaaagactccatggggagccagaaccattggcttgttgataggggtaaggctcatacctgcatttacagattatgcacacagtgccagaagcaa Alignment from GeneWise CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACG tggcatgactacaaacaacaaatcctcttgtgccccgcttccttctgtagGCAATCTACACAGACCAGTCAGAAGAGTTACATAGCTCCCTTCTGGCAAGACATCCGTTAGGGAAGCTGTTCCATGTCCAGCAAAACTTT---GCTGTCCAGGACTTGGATGTTTTCCTTTTGGAGGATGACCTAATAGGTGAGATTAAAAAGAAAGACTCCATGGGGAGCCAGAACCATTGGCTTGTTGATAGGGgtaaggctcatacctgcatttacagattatgcacacagtgccagaagcaa #### Dnmbp_ID8865_3 --> 2 - 1 Original Alignment gaGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAg agacggtacctcgatggattagatgtttcctggttggatattttgaacagagGACCTGGCAATTCTTGATGACAGTGCTCCATCAGCGGGATGGTTGCAGGGGCGTAGCTGTTGGGACGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTCTCCTCACGGAGCCAGCGCTGGCATGCCCAAGGTGCATTGCTACAGCCCCCAGAATACTCTCTTGGGCAGGCCTGTGCTTTGATGGGGCTATCTTCCCAATTGGATAAGGAGTTGGATTTCAGAGAGGGGGACCTAATTACTATCATTGGTGTTCCTGAGCTGGGCTGGTTTGGGGGAAAGCTTGAGGGCTGGAGGGGAGTCTTTCCAGAGGGCTTTATAGAAGTACTGGGTCCCCTAAGAAGTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCTGCAGTCAATGGAGAAGTAGATGTCCCTCCAGAAGAGGCAAAAAGTGGCGGTGATGAAGATGATCAACAATTGGGGACCTACAGTATTGCCCTCTACAAGTTCCAAGCTTTGGAGATGAATGAACTTGACTTTGAGGTTGGAGACAGGATACAGATTCTTGGGACACTGCAAGACGGGTGGTTAGAGGGTTACCTAAAGGGTAAAACAGGGGTTTTTCCCCATCATTTTGTAAAATTGTGTCCTACCAACCGTTCTGAGGACACCACAGCACAACCCCAGGAAAGTAGCTTTTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTAGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGGCCAGACTATGATCTTCCAGGACAAGCATCTGTGCCCCATGATCATGTGACACCTGAGTGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCATCAGGCAGTTCCCCTGATGTTGATCTCAAGAGGCCGCTAACTAAAGACCTATCAACACCTGAGCCCTCTGAGGAAGTAAATGGGGTTTCTTCTCAACCA------CCCATCCATCCCAATGTGCAGAAGTGCCAACAT---CTAACAACAGGGGGCAGCCACCAGACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCTTGGGACTATTCCAGATTGCCCCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGGGTCTCACCTTTTGAGGGCTACTTCCCTTCCAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCACCCTACCATGGCTGGCTATACACAGAAGCATCAGACTTCCATGGAGAACACTGCACGTCTGCATGATCCTCCAGAAAGACCAGAAAGAAGGCCCGGCTTACAAGACCGAGGGCCTGCCAATGATATCACTGCTGCCTCACAGGGTGAGAGCCTAGATCTAGACACTAAGCTAACTCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGCACAAGTACAGAGCCAGAATCAACTGTCCGCCATTTTTTAATTATGGACTCTTACACTGATAAAGGTATTGTAAGAGGCTCCTCAAATTCCCTAACTACACAAGCATTCCCTGAGAGAAGAAAGACTCTCAGGCCGCTACCCCTTAGACCCCATACCACCACACCAATTGCTTCCCACTTGCTAGTTGAT---CGACCAAAACCTGTACCTACATTAGTCATTCGGCCATCCAGACCAGCCTCATTGCCGCCACCTGTCCAGCAGAGGATGAACACAGCCTCACCAAAGCCTACCTCTTGTGCACATCCAGTCTGGGAGGCCCCAGAAAAGGGAGATTCTCAACATATGCAAAAAAGCCCAGCCCACACATTTCCATGCCCCTCCATGTTGGGGAGAATTCGGGATGTAGAAGATGATCTGGACACA---ATCAGGGCTCAGGAAGAGGTGAACTTACTTTCAGAGGAAAAACAAGACGACTCATTAAGGGCAGAGACT---CAGACCCTAAAGTCCTATGAGAGTACAATCCAGAGCCTGACTTTGGAGCTTCAGCAACTGAGAggtgcggatgactacctagggctctgactccatgaggagctaccctgacaa Alignment from CESAR gaGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAg agacggtacctcgatggattagatgtttcctggttggatattttgaacagagGACCTGGCAATTCTTGATGACAGTGCTCCATCAGCGGGATGGTTGCAGGGGCGTAGCTGTTGGGACGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTCTCCTCACGGAGCCAGCGCTGGCATGCCCAAGGTGCATTGCTACAGCCCCCAGAATACTCTCTTGGGCAGGCCTGTGCTTTGATGGGGCTATCTTCCCAATTGGATAAGGAGTTGGATTTCAGAGAGGGGGACCTAATTACTATCATTGGTGTTCCTGAGCTGGGCTGGTTTGGGGGAAAGCTTGAGGGCTGGAGGGGAGTCTTTCCAGAGGGCTTTATAGAAGTACTGGGTCCCCTAAGAAGTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCTGCAGTCAATGGAGAAGTAGATGTCCCTCCAGAAGAGGCAAAAAGTGGCGGTGATGAAGATGATCAACAATTGGGGACCTACAGTATTGCCCTCTACAAGTTCCAAGCTTTGGAGATGAATGAACTTGACTTTGAGGTTGGAGACAGGATACAGATTCTTGGGACACTGCAAGACGGGTGGTTAGAGGGTTACCTAAAGGGTAAAACAGGGGTTTTTCCCCATCATTTTGTAAAATTGTGTCCTACCAACCGTTCTGAGGACACCACAGCACAACCCCAGGAAAGTAGCTTTTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTAGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGGCCAGACTATGATCTTCCAGGACAAGCATCTGTGCCCCATGATCATGTGACACCTGAGTGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCATCAGGCAGTTCCCCTGATGTTGATCTCAAGAGGCCGCTAACTAAAGACCTATCAACACCTGAGCCCTCTGAGGAAGTAAATGGGGTTTCTTCTCAACCA------CCCATCCATCCCAATGTGCAGAAGTGCCAACAT---CTAACAACAGGGGGCAGCCACCAGACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCTTGGGACTATTCCAGATTGCCCCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGGGTCTCACCTTTTGAGGGCTACTTCCCTTCCAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCACCCTACCATGGCTGGCTATACACAGAAGCATCAGACTTCCATGGAGAACACTGCACGTCTGCATGATCCTCCAGAAAGACCAGAAAGAAGGCCCGGCTTACAAGACCGAGGGCCTGCCAATGATATCACTGCTGCCTCACAGGGTGAGAGCCTAGATCTAGACACTAAGCTAACTCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGCACAAGTACAGAGCCAGAATCAACTGTCCGCCATTTTTTAATTATGGACTCTTACACTGATAAAGGTATTGTAAGAGGCTCCTCAAATTCCCTAACTACACAAGCATTCCCTGAGAGAAGAAAGACTCTCAGGCCGCTACCCCTTAGACCCCATACCACCACACCAATTGCTTCCCACTTGCTAGTTGATCGA---CCAAAACCTGTACCTACATTAGTCATTCGGCCATCCAGACCAGCCTCATTGCCGCCACCTGTCCAGCAGAGGATGAACACAGCCTCACCAAAGCCTACCTCTTGTGCACATCCAGTCTGGGAGGCCCCAGAAAAGGGAGATTCTCAACATATGCAAAAAAGCCCAGCCCACACATTTCCATGCCCCTCCATGTTGGGGAGAATTCGGGATGTAGAAGATGATCTGGACACA---ATCAGGGCTCAGGAAGAGGTGAACTTACTTTCAGAGGAAAAACAAGACGACTCATTAAGGGCAGAGACT---CAGACCCTAAAGTCCTATGAGAGTACAATCCAGAGCCTGACTTTGGAGCTTCAGCAACTGAGAggtgcggatgactacctagggctctgactccatgaggagctaccctgacaa Alignment from Spaln_aa2Genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG agacggtacctcgatggattagatgtttcctggttggatattttgaacagAGGACCTGGCAATTCTTGATGACAGTGCTCCATCAGCGGGATGGTTGCAGGGGCGTAGCTGTTGGGACGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTCTCCTCACGGAGCCAGCGCTGGCATGCCCAAGGTGCATTGCTACAGCCCCCAGAATACTCTCTTGGGCAGGCCTGTGCTTTGATGGGGCTATCTTCCCAATTGGATAAGGAGTTGGATTTCAGAGAGGGGGACCTAATTACTATCATTGGTGTTCCTGAGCTGGGCTGGTTTGGGGGAAAGCTTGAGGGCTGGAGGGGAGTCTTTCCAGAGGGCTTTATAGAAGTACTGGGTCCCCTAAGAAGTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCTGCAGTCAATGGAGAAGTAGATGTCCCTCCAGAAGAGGCAAAAAGTGGCGGTGATGAAGATGATCAACAATTGGGGACCTACAGTATTGCCCTCTACAAGTTCCAAGCTTTGGAGATGAATGAACTTGACTTTGAGGTTGGAGACAGGATACAGATTCTTGGGACACTGCAAGACGGGTGGTTAGAGGGTTACCTAAAGGGTAAAACAGGGGTTTTTCCCCATCATTTTGTAAAATTGTGTCCTACCAACCGTTCTGAGGACACCACAGCACAACCCCAGGAAAGTAGCTTTTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTAGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGGCCAGACTATGATCTTCCAGGACAAGCATCTGTGCCCCATGATCATGTGACACCTGAGTGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCATCAGGCAGTTCCCCTGATGTTGATCTCAAGAGGCCGCTAACTAAAGACCTATCAACACCTGAGCCCTCTGAGGAAGTAAATGGGGTTTCTTCTCAACCA------CCCATCCATCCCAATGTGCAGAAGTGCCAACAT---CTAACAACAGGGGGCAGCCACCAGACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCTTGGGACTATTCCAGATTGCCCCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGGGTCTCACCTTTTGAGGGCTACTTCCCTTCCAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCACCCTACCATGGCTGGCTATACACAGAAGCATCAGACTTCCATGGAGAACACTGCACGTCTGCATGATCCTCCAGAAAGACCAGAAAGAAGGCCCGGCTTACAAGACCGAGGGCCTGCCAATGATATCACTGCTGCCTCACAGGGTGAGAGCCTAGATCTAGACACTAAGCTAACTCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGCACAAGTACAGAGCCAGAATCAACTGTCCGCCATTTTTTAATTATGGACTCTTACACTGATAAAGGTATTGTAAGAGGCTCCTCAAATTCCCTAACTACACAAGCATTCCCTGAGAGAAGAAAGACTCTCAGGCCGCTACCCCTTAGACCCCATACCACCACACCAATTGCTTCCCACTTGCTAGTTGATCGA---CCAAAACCTGTACCTACATTAGTCATTCGGCCATCCAGACCAGCCTCATTGCCGCCACCTGTCCAGCAGAGGATGAACACAGCCTCACCAAAGCCTACCTCTTGTGCACATCCAGTCTGGGAGGCCCCAGAAAAGGGAGATTCTCAACATATGCAAAAAAGCCCAGCCCACACATTTCCATGCCCCTCCATGTTGGGGAGAATTCGGGATGTAGAAGATGATCTGGACACA---ATCAGGGCTCAGGAAGAGGTGAACTTACTTTCAGAGGAAAAACAAGACGACTCATTAAGGGCAGAGACT---CAGACCCTAAAGTCCTATGAGAGTACAATCCAGAGCCTGACTTTGGAGCTTCAGCAACTGAGAGgtgcggatgactacctagggctctgactccatgaggagctaccctgacaa Alignment from Spaln_nt2Genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG agacggtacctcgatggattagatgtttcctggttggatattttgaacagAGGACCTGGCAATTCTTGATGACAGTGCTCCATCAGCGGGATGGTTGCAGGGGCGTAGCTGTTGGGACGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTCTCCTCACGGAGCCAGCGCTGGCATGCCCAAGGTGCATTGCTACAGCCCCCAGAATACTCTCTTGGGCAGGCCTGTGCTTTGATGGGGCTATCTTCCCAATTGGATAAGGAGTTGGATTTCAGAGAGGGGGACCTAATTACTATCATTGGTGTTCCTGAGCTGGGCTGGTTTGGGGGAAAGCTTGAGGGCTGGAGGGGAGTCTTTCCAGAGGGCTTTATAGAAGTACTGGGTCCCCTAAGAAGTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCTGCAGTCAATGGAGAAGTAGATGTCCCTCCAGAAGAGGCAAAAAGTGGCGGTGATGAAGATGATCAACAATTGGGGACCTACAGTATTGCCCTCTACAAGTTCCAAGCTTTGGAGATGAATGAACTTGACTTTGAGGTTGGAGACAGGATACAGATTCTTGGGACACTGCAAGACGGGTGGTTAGAGGGTTACCTAAAGGGTAAAACAGGGGTTTTTCCCCATCATTTTGTAAAATTGTGTCCTACCAACCGTTCTGAGGACACCACAGCACAACCCCAGGAAAGTAGCTTTTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTAGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGGCCAGACTATGATCTTCCAGGACAAGCATCTGTGCCCCATGATCATGTGACACCTGAGTGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCATCAGGCAGTTCCCCTGATGTTGATCTCAAGAGGCCGCTAACTAAAGACCTATCAACACCTGAGCCCTCTGAGGAAGTAAATGGGGTTTCTTCTCAACC------ACCCATCCATCCCAATGTGCAGAAGTGCCAAC---ATCTAACAACAGGGGGCAGCCACCAGACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCTTGGGACTATTCCAGATTGCCCCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGGGTCTCACCTTTTGAGGGCTACTTCCCTTCCAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCACCCTACCATGGCTGGCTATACACAGAAGCATCAGACTTCCATGGAGAACACTGCACGTCTGCATGATCCTCCAGAAAGACCAGAAAGAAGGCCCGGCTTACAAGACCGAGGGCCTGCCAATGATATCACTGCTGCCTCACAGGGTGAGAGCCTAGATCTAGACACTAAGCTAACTCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGCACAAGTACAGAGCCAGAATCAACTGTCCGCCATTTTTTAATTATGGACTCTTACACTGATAAAGGTATTGTAAGAGGCTCCTCAAATTCCCTAACTACACAAGCATTCCCTGAGAGAAGAAAGACTCTCAGGCCGCTACCCCTTAGACCCCATACCACCACACCAATTGCTTCCCACTTGCTAGTTGATC---GACCAAAACCTGTACCTACATTAGTCATTCGGCCATCCAGACCAGCCTCATTGCCGCCACCTGTCCAGCAGAGGATGAACACAGCCTCACCAAAGCCTACCTCTTGTGCACATCCAGTCTGGGAGGCCCCAGAAAAGGGAGATTCTCAACATATGCAAAAAAGCCCAGCCCACACATTTCCATGCCCCTCCATGTTGGGGAGAATTCGGGATGTAGAAGATGATCTGGACAC---AATCAGGGCTCAGGAAGAGGTGAACTTACTTTCAGAGGAAAAACAAGACGACTCATTAAGGGCAGAGACTC---AGACCCTAAAGTCCTATGAGAGTACAATCCAGAGCCTGACTTTGGAGCTTCAGCAACTGAGAGgtgcggatgactacctagggctctgactccatgaggagctaccctgacaa Alignment from Pairagon GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG agacggtacctcgatggattagatgtttcctggttggatattttgaacagAGGACCTGGCAATTCTTGATGACAGTGCTCCATCAGCGGGATGGTTGCAGGGGCGTAGCTGTTGGGACGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTCTCCTCACGGAGCCAGCGCTGGCATGCCCAAGGTGCATTGCTACAGCCCCCAGAATACTCTCTTGGGCAGGCCTGTGCTTTGATGGGGCTATCTTCCCAATTGGATAAGGAGTTGGATTTCAGAGAGGGGGACCTAATTACTATCATTGGTGTTCCTGAGCTGGGCTGGTTTGGGGGAAAGCTTGAGGGCTGGAGGGGAGTCTTTCCAGAGGGCTTTATAGAAGTACTGGGTCCCCTAAGAAGTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCTGCAGTCAATGGAGAAGTAGATGTCCCTCCAGAAGAGGCAAAAAGTGGCGGTGATGAAGATGATCAACAATTGGGGACCTACAGTATTGCCCTCTACAAGTTCCAAGCTTTGGAGATGAATGAACTTGACTTTGAGGTTGGAGACAGGATACAGATTCTTGGGACACTGCAAGACGGGTGGTTAGAGGGTTACCTAAAGGGTAAAACAGGGGTTTTTCCCCATCATTTTGTAAAATTGTGTCCTACCAACCGTTCTGAGGACACCACAGCACAACCCCAGGAAAGTAGCTTTTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTAGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGGCCAGACTATGATCTTCCAGGACAAGCATCTGTGCCCCATGATCATGTGACACCTGAGTGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCATCAGGCAGTTCCCCTGATGTTGATCTCAAGAGGCCGCTAACTAAAGACCTATCAACACCTGAGCCCTCTGAGGAAGTAAATGGGGTTTCTTCTCAACC------ACCCATCCATCCCAATGTGCAGAAGTGCCAAC---ATCTAACAACAGGGGGCAGCCACCAGACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCTTGGGACTATTCCAGATTGCCCCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGGGTCTCACCTTTTGAGGGCTACTTCCCTTCCAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCACCCTACCATGGCTGGCTATACACAGAAGCATCAGACTTCCATGGAGAACACTGCACGTCTGCATGATCCTCCAGAAAGACCAGAAAGAAGGCCCGGCTTACAAGACCGAGGGCCTGCCAATGATATCACTGCTGCCTCACAGGGTGAGAGCCTAGATCTAGACACTAAGCTAACTCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGCACAAGTACAGAGCCAGAATCAACTGTCCGCCATTTTTTAATTATGGACTCTTACACTGATAAAGGTATTGTAAGAGGCTCCTCAAATTCCCTAACTACACAAGCATTCCCTGAGAGAAGAAAGACTCTCAGGCCGCTACCCCTTAGACCCCATACCACCACACCAATTGCTTCCCACTTGCTAGTTGATC---GACCAAAACCTGTACCTACATTAGTCATTCGGCCATCCAGACCAGCCTCATTGCCGCCACCTGTCCAGCAGAGGATGAACACAGCCTCACCAAAGCCTACCTCTTGTGCACATCCAGTCTGGGAGGCCCCAGAAAAGGGAGATTCTCAACATATGCAAAAAAGCCCAGCCCACACATTTCCATGCCCCTCCATGTTGGGGAGAATTCGGGATGTAGAAGATGATCTGGACACA---ATCAGGGCTCAGGAAGAGGTGAACTTACTTTCAGAGGAAAAACAAGACGACTCATTAAGGGCAGAGACTC---AGACCCTAAAGTCCTATGAGAGTACAATCCAGAGCCTGACTTTGGAGCTTCAGCAACTGAGAGgtgcggatgactacctagggctctgactccatgaggagctaccctgacaa Alignment from Exonerate_protein2genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG agacggtacctcgatggattagatgtttcctggttggatattttgaacagAGGACCTGGCAATTCTTGATGACAGTGCTCCATCAGCGGGATGGTTGCAGGGGCGTAGCTGTTGGGACGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTCTCCTCACGGAGCCAGCGCTGGCATGCCCAAGGTGCATTGCTACAGCCCCCAGAATACTCTCTTGGGCAGGCCTGTGCTTTGATGGGGCTATCTTCCCAATTGGATAAGGAGTTGGATTTCAGAGAGGGGGACCTAATTACTATCATTGGTGTTCCTGAGCTGGGCTGGTTTGGGGGAAAGCTTGAGGGCTGGAGGGGAGTCTTTCCAGAGGGCTTTATAGAAGTACTGGGTCCCCTAAGAAGTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCTGCAGTCAATGGAGAAGTAGATGTCCCTCCAGAAGAGGCAAAAAGTGGCGGTGATGAAGATGATCAACAATTGGGGACCTACAGTATTGCCCTCTACAAGTTCCAAGCTTTGGAGATGAATGAACTTGACTTTGAGGTTGGAGACAGGATACAGATTCTTGGGACACTGCAAGACGGGTGGTTAGAGGGTTACCTAAAGGGTAAAACAGGGGTTTTTCCCCATCATTTTGTAAAATTGTGTCCTACCAACCGTTCTGAGGACACCACAGCACAACCCCAGGAAAGTAGCTTTTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTAGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGGCCAGACTATGATCTTCCAGGACAAGCATCTGTGCCCCATGATCATGTGACACCTGAGTGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCATCAGGCAGTTCCCCTGATGTTGATCTCAAGAGGCCGCTAACTAAAGACCTATCAACACCTGAGCCCTCTGAGGAAGTAAATGGGGTTTCTTCTCAACCA------CCCATCCATCCCAATGTGCAGAAGTGCCAACAT---CTAACAACAGGGGGCAGCCACCAGACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCTTGGGACTATTCCAGATTGCCCCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGGGTCTCACCTTTTGAGGGCTACTTCCCTTCCAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCACCCTACCATGGCTGGCTATACACAGAAGCATCAGACTTCCATGGAGAACACTGCACGTCTGCATGATCCTCCAGAAAGACCAGAAAGAAGGCCCGGCTTACAAGACCGAGGGCCTGCCAATGATATCACTGCTGCCTCACAGGGTGAGAGCCTAGATCTAGACACTAAGCTAACTCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGCACAAGTACAGAGCCAGAATCAACTGTCCGCCATTTTTTAATTATGGACTCTTACACTGATAAAGGTATTGTAAGAGGCTCCTCAAATTCCCTAACTACACAAGCATTCCCTGAGAGAAGAAAGACTCTCAGGCCGCTACCCCTTAGACCCCATACCACCACACCAATTGCTTCCCACTTGCTAGTTGATCGA---CCAAAACCTGTACCTACATTAGTCATTCGGCCATCCAGACCAGCCTCATTGCCGCCACCTGTCCAGCAGAGGATGAACACAGCCTCACCAAAGCCTACCTCTTGTGCACATCCAGTCTGGGAGGCCCCAGAAAAGGGAGATTCTCAACATATGCAAAAAAGCCCAGCCCACACATTTCCATGCCCCTCCATGTTGGGGAGAATTCGGGATGTAGAAGATGATCTGGACACA---ATCAGGGCTCAGGAAGAGGTGAACTTACTTTCAGAGGAAAAACAAGACGACTCATTAAGGGCAGAGACT---CAGACCCTAAAGTCCTATGAGAGTACAATCCAGAGCCTGACTTTGGAGCTTCAGCAACTGAGAGgtgcggatgactacctagggctctgactccatgaggagctaccctgacaa Alignment from Exonerate_coding2genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG agacggtacctcgatggattagatgtttcctggttggatattttgaacagAGGACCTGGCAATTCTTGATGACAGTGCTCCATCAGCGGGATGGTTGCAGGGGCGTAGCTGTTGGGACGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTCTCCTCACGGAGCCAGCGCTGGCATGCCCAAGGTGCATTGCTACAGCCCCCAGAATACTCTCTTGGGCAGGCCTGTGCTTTGATGGGGCTATCTTCCCAATTGGATAAGGAGTTGGATTTCAGAGAGGGGGACCTAATTACTATCATTGGTGTTCCTGAGCTGGGCTGGTTTGGGGGAAAGCTTGAGGGCTGGAGGGGAGTCTTTCCAGAGGGCTTTATAGAAGTACTGGGTCCCCTAAGAAGTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCTGCAGTCAATGGAGAAGTAGATGTCCCTCCAGAAGAGGCAAAAAGTGGCGGTGATGAAGATGATCAACAATTGGGGACCTACAGTATTGCCCTCTACAAGTTCCAAGCTTTGGAGATGAATGAACTTGACTTTGAGGTTGGAGACAGGATACAGATTCTTGGGACACTGCAAGACGGGTGGTTAGAGGGTTACCTAAAGGGTAAAACAGGGGTTTTTCCCCATCATTTTGTAAAATTGTGTCCTACCAACCGTTCTGAGGACACCACAGCACAACCCCAGGAAAGTAGCTTTTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTAGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGGCCAGACTATGATCTTCCAGGACAAGCATCTGTGCCCCATGATCATGTGACACCTGAGTGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCATCAGGCAGTTCCCCTGATGTTGATCTCAAGAGGCCGCTAACTAAAGACCTATCAACACCTGAGCCCTCTGAGGAAGTAAATGGGGTTTCTTCTCAACCA------CCCATCCATCCCAATGTGCAGAAGTGCCAACAT---CTAACAACAGGGGGCAGCCACCAGACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCTTGGGACTATTCCAGATTGCCCCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGGGTCTCACCTTTTGAGGGCTACTTCCCTTCCAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCACCCTACCATGGCTGGCTATACACAGAAGCATCAGACTTCCATGGAGAACACTGCACGTCTGCATGATCCTCCAGAAAGACCAGAAAGAAGGCCCGGCTTACAAGACCGAGGGCCTGCCAATGATATCACTGCTGCCTCACAGGGTGAGAGCCTAGATCTAGACACTAAGCTAACTCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGCACAAGTACAGAGCCAGAATCAACTGTCCGCCATTTTTTAATTATGGACTCTTACACTGATAAAGGTATTGTAAGAGGCTCCTCAAATTCCCTAACTACACAAGCATTCCCTGAGAGAAGAAAGACTCTCAGGCCGCTACCCCTTAGACCCCATACCACCACACCAATTGCTTCCCACTTGCTAGTTGATCGA---CCAAAACCTGTACCTACATTAGTCATTCGGCCATCCAGACCAGCCTCATTGCCGCCACCTGTCCAGCAGAGGATGAACACAGCCTCACCAAAGCCTACCTCTTGTGCACATCCAGTCTGGGAGGCCCCAGAAAAGGGAGATTCTCAACATATGCAAAAAAGCCCAGCCCACACATTTCCATGCCCCTCCATGTTGGGGAGAATTCGGGATGTAGAAGATGATCTGGACACA---ATCAGGGCTCAGGAAGAGGTGAACTTACTTTCAGAGGAAAAACAAGACGACTCATTAAGGGCAGAGACT---CAGACCCTAAAGTCCTATGAGAGTACAATCCAGAGCCTGACTTTGGAGCTTCAGCAACTGAGAGgtgcggatgactacctagggctctgactccatgaggagctaccctgacaa Alignment from GeneWise GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG agacggtacctcgatggattagatgtttcctggttggatattttgaacagAGGACCTGGCAATTCTTGATGACAGTGCTCCATCAGCGGGATGGTTGCAGGGGCGTAGCTGTTGGGACGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTCTCCTCACGGAGCCAGCGCTGGCATGCCCAAGGTGCATTGCTACAGCCCCCAGAATACTCTCTTGGGCAGGCCTGTGCTTTGATGGGGCTATCTTCCCAATTGGATAAGGAGTTGGATTTCAGAGAGGGGGACCTAATTACTATCATTGGTGTTCCTGAGCTGGGCTGGTTTGGGGGAAAGCTTGAGGGCTGGAGGGGAGTCTTTCCAGAGGGCTTTATAGAAGTACTGGGTCCCCTAAGAAGTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCTGCAGTCAATGGAGAAGTAGATGTCCCTCCAGAAGAGGCAAAAAGTGGCGGTGATGAAGATGATCAACAATTGGGGACCTACAGTATTGCCCTCTACAAGTTCCAAGCTTTGGAGATGAATGAACTTGACTTTGAGGTTGGAGACAGGATACAGATTCTTGGGACACTGCAAGACGGGTGGTTAGAGGGTTACCTAAAGGGTAAAACAGGGGTTTTTCCCCATCATTTTGTAAAATTGTGTCCTACCAACCGTTCTGAGGACACCACAGCACAACCCCAGGAAAGTAGCTTTTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTAGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGGCCAGACTATGATCTTCCAGGACAAGCATCTGTGCCCCATGATCATGTGACACCTGAGTGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCATCAGGCAGTTCCCCTGATGTTGATCTCAAGAGGCCGCTAACTAAAGACCTATCAACACCTGAGCCCTCTGAGGAAGTAAATGGGGTTTCTTCTCAACCA------CCCATCCATCCCAATGTGCAGAAGTGCCAACAT---CTAACAACAGGGGGCAGCCACCAGACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCTTGGGACTATTCCAGATTGCCCCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGGGTCTCACCTTTTGAGGGCTACTTCCCTTCCAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCACCCTACCATGGCTGGCTATACACAGAAGCATCAGACTTCCATGGAGAACACTGCACGTCTGCATGATCCTCCAGAAAGACCAGAAAGAAGGCCCGGCTTACAAGACCGAGGGCCTGCCAATGATATCACTGCTGCCTCACAGGGTGAGAGCCTAGATCTAGACACTAAGCTAACTCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGCACAAGTACAGAGCCAGAATCAACTGTCCGCCATTTTTTAATTATGGACTCTTACACTGATAAAGGTATTGTAAGAGGCTCCTCAAATTCCCTAACTACACAAGCATTCCCTGAGAGAAGAAAGACTCTCAGGCCGCTACCCCTTAGACCCCATACCACCACACCAATTGCTTCCCACTTGCTAGTTGATCGA---CCAAAACCTGTACCTACATTAGTCATTCGGCCATCCAGACCAGCCTCATTGCCGCCACCTGTCCAGCAGAGGATGAACACAGCCTCACCAAAGCCTACCTCTTGTGCACATCCAGTCTGGGAGGCCCCAGAAAAGGGAGATTCTCAACATATGCAAAAAAGCCCAGCCCACACATTTCCATGCCCCTCCATGTTGGGGAGAATTCGGGATGTAGAAGATGATCTGGACACA---ATCAGGGCTCAGGAAGAGGTGAACTTACTTTCAGAGGAAAAACAAGACGACTCATTAAGGGCAGAGACT---CAGACCCTAAAGTCCTATGAGAGTACAATCCAGAGCCTGACTTTGGAGCTTCAGCAACTGAGAGgtgcggatgactacctagggctctgactccatgaggagctaccctgacaa #### Dntt_ID8076_2 --> 1 - 0 Original Alignment tGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgccatcacattttggacgtagattgggcaatgtgtgtgtcaacagtGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACGGATATCCTTGAATGG---------CAA------------AGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGACGATGGGGAGACATCAGTTGGTGgtgagtcttttccatcctgcaaagacatagaattggcacaggttagacag Alignment from CESAR tGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgccatcacattttggacgtagattgggcaatgtgtgtgtcaacagtGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACGGATATCCTTGAATGGCAA---------------------AGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGACGATGGGGAGACATCAGTTGGTGgtgagtcttttccatcctgcaaagacatagaattggcacaggttagacag Alignment from Spaln_aa2Genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgccatcacattttggacgtagattgggcaatgtgtgtgtcaacagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACGGATATCCTTGAATGG---------------------CAAAGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGACGATGGGGAGACATCAGTTGGTGgtgagtcttttccatcctgcaaagacatagaattggcacaggttagacag Alignment from Spaln_nt2Genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgccatcacattttggacgtagattgggcaatgtgtgtgtcaacagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACGGATATCCTTGAATGGC------------------AA---AGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGACGATGGGGAGACATCAGTTGGTGgtgagtcttttccatcctgcaaagacatagaattggcacaggttagacag Alignment from Pairagon TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgccatcacattttggacgtagattgggcaatgtgtgtgtcaacagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACGGATATCCTTGAATGGC---------------------AAAGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGACGATGGGGAGACATCAGTTGGTGgtgagtcttttccatcctgcaaagacatagaattggcacaggttagacag Alignment from Exonerate_protein2genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCC---GAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgccatcacattttggacgtagATTGGGCAATGTGTGTGTCAACAGTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACGGATATCCTTGAATGGCAAAGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGACGATGGGGAGACATCAGTTGGTGgtgagtcttttccatcctgcaaagacatagaattggcacaggttagacag Alignment from Exonerate_coding2genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCC---GAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgccatcacattttggacgtagATTGGGCAATGTGTGTGTCAACAGTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACGGATATCCTTGAATGGCAAAGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGACGATGGGGAGACATCAGTTGGTGgtgagtcttttccatcctgcaaagacatagaattggcacaggttagacag Alignment from GeneWise TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgccatcacattttggacgtagattgggcaatgtgtgtgtcaacagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACGGATATCCTTGAATGG---------------------CAAAGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGACGATGGGGAGACATCAGTTGGTGgtgagtcttttccatcctgcaaagacatagaattggcacaggttagacag #### Dntt_ID8079_5 --> 0 - 0 Original Alignment GGAATTATTGAAGATGGAGAAAGTTCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAATCCTTCAAA aacagggagagggttataagatgatctcccccactccccgctccccacagGGAATCATTGAAGATGGGGATAGTCCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAGTCTTTCAAAgtaagccacatgtcagggggaaagccccgcagaatgtagtggttgtgttt Alignment from CESAR GGAATTATTGAAGATGGAGAAAGTTCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAATCCTTCAAA aacagggagagggttataagatgatctcccccactccccgctccccacagGGAATCATTGAAGATGGGGATAGTCCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAGTCTTTCAAAgtaagccacatgtcagggggaaagccccgcagaatgtagtggttgtgttt Alignment from Spaln_aa2Genome GGAATTATTGAAGATGGAGAAAGTTCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAATCCTTCAAA aacagggagagggttataagatgatctcccccactccccgctccccacagGGAATCATTGAAGATGGGGATAGTCCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAGTCTTTCAAAgtaagccacatgtcagggggaaagccccgcagaatgtagtggttgtgttt Alignment from Spaln_nt2Genome GGAATTATTGAAGATGGAGAAAGTTCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAATCCTTCAAA aacagggagagggttataagatgatctcccccactccccgctccccacagGGAATCATTGAAGATGGGGATAGTCCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAGTCTTTCAAAgtaagccacatgtcagggggaaagccccgcagaatgtagtggttgtgttt Alignment from Pairagon GGAATTATTGAAGATGGAGAAAGTTCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAATCCTTCAAA aacagggagagggttataagatgatctcccccactccccgctccccacagGGAATCATTGAAGATGGGGATAGTCCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAGTCTTTCAAAgtaagccacatgtcagggggaaagccccgcagaatgtagtggttgtgttt Alignment from Exonerate_protein2genome GGAATTATTGAAGATGGAGAAAGTTCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAATCCTTCAAA aacagggagagggttataagatgatctcccccactccccgctccccacagGGAATCATTGAAGATGGGGATAGTCCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAGTCTTTCAAAgtaagccacatgtcagggggaaagccccgcagaatgtagtggttgtgttt Alignment from Exonerate_coding2genome GGAATTATTGAAGATGGAGAAAGTTCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAATCCTTCAAA aacagggagagggttataagatgatctcccccactccccgctccccacagGGAATCATTGAAGATGGGGATAGTCCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAGTCTTTCAAAgtaagccacatgtcagggggaaagccccgcagaatgtagtggttgtgttt Alignment from GeneWise GGAATTATTGAAGATGGAGAAAGTTCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAATCCTTCAAA aacagggagagggttataagatgatctcccccactccccgctccccacagGGAATCATTGAAGATGGGGATAGTCCTGAAGCTAAAGCTGTGTTAAATGATGAGCGATATAAGTCTTTCAAAgtaagccacatgtcagggggaaagccccgcagaatgtagtggttgtgttt #### Dntt_ID8080_6 --> 0 - 1 Original Alignment CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAg taactcttcacatgggtcctgctagtggtttctttgtgtgcccactatagCTCTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAAGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAggtacccccttgatatatgagattgcatgtcccaatgggcaaggaaagaat Alignment from CESAR CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAg taactcttcacatgggtcctgctagtggtttctttgtgtgcccactatagCTCTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAAGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAggtacccccttgatatatgagattgcatgtcccaatgggcaaggaaagaat Alignment from Spaln_aa2Genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG taactcttcacatgggtcctgctagtggtttctttgtgtgcccactatagCTCTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAAGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacccccttgatatatgagattgcatgtcccaatgggcaaggaaagaat Alignment from Spaln_nt2Genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG taactcttcacatgggtcctgctagtggtttctttgtgtgcccactatagCTCTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAAGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacccccttgatatatgagattgcatgtcccaatgggcaaggaaagaat Alignment from Pairagon CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG taactcttcacatgggtcctgctagtggtttctttgtgtgcccactatagCTCTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAAGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacccccttgatatatgagattgcatgtcccaatgggcaaggaaagaat Alignment from Exonerate_protein2genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG taactcttcacatgggtcctgctagtggtttctttgtgtgcccactatagCTCTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAAGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacccccttgatatatgagattgcatgtcccaatgggcaaggaaagaat Alignment from Exonerate_coding2genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG taactcttcacatgggtcctgctagtggtttctttgtgtgcccactatagCTCTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAAGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacccccttgatatatgagattgcatgtcccaatgggcaaggaaagaat Alignment from GeneWise CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG taactcttcacatgggtcctgctagtggtttctttgtgtgcccactatagCTCTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAAGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacccccttgatatatgagattgcatgtcccaatgggcaaggaaagaat #### Dntt_ID8082_8 --> 1 - 0 Original Alignment gGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG ccttctttgtctcttatgatctacagcaacagtttttttcttctccttaggGGCAAGATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGATCAGTTA---TTACATAAAGTGTCAGATTTCTGGAAACGGCAGgtgagtagtaccgttataacacagctgatctttcatgatctgtcataaat Alignment from CESAR gGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG ccttctttgtctcttatgatctacagcaacagtttttttcttctccttaggGGCAAGATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGAT---CAGTTATTACATAAAGTGTCAGATTTCTGGAAACGGCAGgtgagtagtaccgttataacacagctgatctttcatgatctgtcataaat Alignment from Spaln_aa2Genome GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG ccttctttgtctcttatgatctacagcaacagtttttttcttctccttagGGGCAAGATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGAT---CAGTTATTACATAAAGTGTCAGATTTCTGGAAACGGCAGgtgagtagtaccgttataacacagctgatctttcatgatctgtcataaat Alignment from Spaln_nt2Genome GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG ccttctttgtctcttatgatctacagcaacagtttttttcttctccttagGGGCAAGATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGAT---GAGGATCAGTTATTACATAAAGTGTCAGATTTCTGGAAACGGCAGgtgagtagtaccgttataacacagctgatctttcatgatctgtcataaat Alignment from Pairagon GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG ccttctttgtctcttatgatctacagcaacagtttttttcttctccttagGGGCAAGATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGAT---GAGGATCAGTTATTACATAAAGTGTCAGATTTCTGGAAACGGCAGgtgagtagtaccgttataacacagctgatctttcatgatctgtcataaat Alignment from Exonerate_protein2genome GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG ccttctttgtctcttatgatctacagcaacagtttttttcttctccttagGGGCAAGATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGAT---CAGTTATTACATAAAGTGTCAGATTTCTGGAAACGGCAGgtgagtagtaccgttataacacagctgatctttcatgatctgtcataaat Alignment from Exonerate_coding2genome GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG ccttctttgtctcttatgatctacagcaacagtttttttcttctccttagGGGCAAGATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGAT---CAGTTATTACATAAAGTGTCAGATTTCTGGAAACGGCAGgtgagtagtaccgttataacacagctgatctttcatgatctgtcataaat Alignment from GeneWise GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG ccttctttgtctcttatgatctacagcaacagtttttttcttctccttagGGGCAAGATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGATCAG---TTATTACATAAAGTGTCAGATTTCTGGAAACGGCAGgtgagtagtaccgttataacacagctgatctttcatgatctgtcataaat #### Dock8_ID5382_5 --> 1 - 0 Original Alignment aAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG cctgtccttgccctatgaatgagaagaactgctgttctttcctttaatagaAACCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTAGATTGCAGTGAACCCGACACTCAAgtaaggtcgcattgccaaagggcttcagatataacattcatatgttcagg Alignment from CESAR aAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG cctgtccttgccctatgaatgagaagaactgctgttctttcctttaatagaAACCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTAGATTGCAGTGAACCCGACACTCAAgtaaggtcgcattgccaaagggcttcagatataacattcatatgttcagg Alignment from Spaln_aa2Genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG cctgtccttgccctatgaatgagaagaactgctgttctttcctttaatagAAACCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTAGATTGCAGTGAACCCGACACTCAAgtaaggtcgcattgccaaagggcttcagatataacattcatatgttcagg Alignment from Spaln_nt2Genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG cctgtccttgccctatgaatgagaagaactgctgttctttcctttaatagAAACCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTAGATTGCAGTGAACCCGACACTCAAgtaaggtcgcattgccaaagggcttcagatataacattcatatgttcagg Alignment from Pairagon AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG cctgtccttgccctatgaatgagaagaactgctgttctttcctttaatagAAACCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTAGATTGCAGTGAACCCGACACTCAAgtaaggtcgcattgccaaagggcttcagatataacattcatatgttcagg Alignment from Exonerate_protein2genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG cctgtccttgccctatgaatgagaagaactgctgttctttcctttaatagAAACCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTAGATTGCAGTGAACCCGACACTCAAgtaaggtcgcattgccaaagggcttcagatataacattcatatgttcagg Alignment from Exonerate_coding2genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG cctgtccttgccctatgaatgagaagaactgctgttctttcctttaatagAAACCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTAGATTGCAGTGAACCCGACACTCAAgtaaggtcgcattgccaaagggcttcagatataacattcatatgttcagg Alignment from GeneWise AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG cctgtccttgccctatgaatgagaagaactgctgttctttcctttaatagAAACCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTAGATTGCAGTGAACCCGACACTCAAgtaaggtcgcattgccaaagggcttcagatataacattcatatgttcagg #### Dock8_ID5383_6 --> 0 - 0 Original Alignment ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacgtaccccttgggttttctgtgaccatttgcagACAGGACCACATCATCCATTAAATGTGTTGTGTGATGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAACGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGACCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtagggataagttttcatagccaccagtctacacctcaggggcaatggac Alignment from CESAR ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacgtaccccttgggttttctgtgaccatttgcagACAGGACCACATCATCCATTAAATGTGTTGTGTGATGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAACGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGACCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtagggataagttttcatagccaccagtctacacctcaggggcaatggac Alignment from Spaln_aa2Genome ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacgtaccccttgggttttctgtgaccatttgcagACAGGACCACATCATCCATTAAATGTGTTGTGTGATGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAACGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGACCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtagggataagttttcatagccaccagtctacacctcaggggcaatggac Alignment from Spaln_nt2Genome ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacgtaccccttgggttttctgtgaccatttgcagACAGGACCACATCATCCATTAAATGTGTTGTGTGATGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAACGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGACCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtagggataagttttcatagccaccagtctacacctcaggggcaatggac Alignment from Pairagon ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacgtaccccttgggttttctgtgaccatttgcagACAGGACCACATCATCCATTAAATGTGTTGTGTGATGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAACGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGACCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtagggataagttttcatagccaccagtctacacctcaggggcaatggac Alignment from Exonerate_protein2genome ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacgtaccccttgggttttctgtgaccatttgcagACAGGACCACATCATCCATTAAATGTGTTGTGTGATGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAACGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGACCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtagggataagttttcatagccaccagtctacacctcaggggcaatggac Alignment from Exonerate_coding2genome ctttgaaagagtggtcacgtaccccttgggttttctgtgaccatttgcagacaggaccacatcatccattaaatgtgttgtgtgatgtatctgggaaagggccactaacatcatgtgactttgacctgcgcagcctgaagcctgatgaacggttagaaaacctcctccagcttttgagtgctgaggattttgagaaggagaaggaagaagcgcgaaagaccaaccgaccagcagagctttttgccctctatccacctgtggaggaggtagggataagttttcatagccaccagtctacacctcaggggcaatggac Alignment from GeneWise ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacgtaccccttgggttttctgtgaccatttgcagACAGGACCACATCATCCATTAAATGTGTTGTGTGATGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAACGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGACCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtagggataagttttcatagccaccagtctacacctcaggggcaatggac #### Dock8_ID5385_8 --> 1 - 0 Original Alignment gTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG aatatctgaaggcctgttagagtgagattgctgcccttgcttccattcaggTTTGATATTGAAGTTCAACCTCTA---TTAAGTATTGCCATTTATGATGCTAAGGAAAGGAAAAAGgtaactccagccctaaaagcaacatgatattgtagatccctgatagtccc Alignment from CESAR gTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG aatatctgaaggcctgttagagtgagattgctgcccttgcttccattcaggTTTGATATTGAAGTTCAACCTCTATTA---AGTATTGCCATTTATGATGCTAAGGAAAGGAAAAAGgtaactccagccctaaaagcaacatgatattgtagatccctgatagtccc Alignment from Spaln_aa2Genome GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG aatatctgaaggcctgttagagtgagattgctgcccttgcttccattcagGTTTGATATTGAAGTTCAACCTCTATTA---AGTATTGCCATTTATGATGCTAAGGAAAGGAAAAAGgtaactccagccctaaaagcaacatgatattgtagatccctgatagtccc Alignment from Spaln_nt2Genome GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG aatatctgaaggcctgttagagtgagattgctgcccttgcttccattcagGTTTGATATTGAAGTTCAACCTCTATT---AAGTATTGCCATTTATGATGCTAAGGAAAGGAAAAAGgtaactccagccctaaaagcaacatgatattgtagatccctgatagtccc Alignment from Pairagon GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG aatatctgaaggcctgttagagtgagattgctgcccttgcttccattcagGTTTGATATTGAAGTTCAACCTCTATT---AAGTATTGCCATTTATGATGCTAAGGAAAGGAAAAAGgtaactccagccctaaaagcaacatgatattgtagatccctgatagtccc Alignment from Exonerate_protein2genome GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG aatatctgaaggcctgttagagtgagattgctgcccttgcttccattcagGTTTGATATTGAAGTTCAACCTCTATTA---AGTATTGCCATTTATGATGCTAAGGAAAGGAAAAAGgtaactccagccctaaaagcaacatgatattgtagatccctgatagtccc Alignment from Exonerate_coding2genome GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG aatatctgaaggcctgttagagtgagattgctgcccttgcttccattcagGTTTGATATTGAAGTTCAACCTCTATTA---AGTATTGCCATTTATGATGCTAAGGAAAGGAAAAAGgtaactccagccctaaaagcaacatgatattgtagatccctgatagtccc Alignment from GeneWise GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG aatatctgaaggcctgttagagtgagattgctgcccttgcttccattcagGTTTGATATTGAAGTTCAACCTCTATTA---AGTATTGCCATTTATGATGCTAAGGAAAGGAAAAAGgtaactccagccctaaaagcaacatgatattgtagatccctgatagtccc #### Dock8_ID5388_11 --> 0 - 1 Original Alignment AGTAAAGAAAAGGTTGAAAAACTAAAACTTCAAGCTGAATCCTTCTGCCAACGTTTGGGGAAATACCGGATGCCCTTCGCCTGGGCCCCCATTAGCTTAGCAAGCTTCTTCAACATCTCCACCCTTGAAAGGGAGAGCACAGATGTGGAGCCTGGGGTTg tagacactccagcctagttaatgtcctgatttctgcttctctccacccagAGTAAAGAAGAGGTTGAAAAACTAAAAATCCAGGCAGAATCCTTCTGCCAACAATTAGGGAAATACCAGATGCCATTCACTTGGAGTCCCATGGGCTTGGCTAGCTTTTTTAACATTCCCACCTTA---CGTGGTAGCACAGATGTGGAGCCAGGGGTGggtaagattttccctgggacagcacttaggccctccattataggccacctt Alignment from CESAR AGTAAAGAAAAGGTTGAAAAACTAAAACTTCAAGCTGAATCCTTCTGCCAACGTTTGGGGAAATACCGGATGCCCTTCGCCTGGGCCCCCATTAGCTTAGCAAGCTTCTTCAACATCTCCACCCTTGAAAGGGAGAGCACAGATGTGGAGCCTGGGGTTg tagacactccagcctagttaatgtcctgatttctgcttctctccacccagAGTAAAGAAGAGGTTGAAAAACTAAAAATCCAGGCAGAATCCTTCTGCCAACAATTAGGGAAATACCAGATGCCATTCACTTGGAGTCCCATGGGCTTGGCTAGCTTTTTTAACATTCCCACCTTA---CGTGGTAGCACAGATGTGGAGCCAGGGGTGggtaagattttccctgggacagcacttaggccctccattataggccacctt Alignment from Spaln_aa2Genome AGTAAAGAAAAGGTTGAAAAACTAAAACTTCAAGCTGAATCCTTCTGCCAACGTTTGGGGAAATACCGGATGCCCTTCGCCTGGGCCCCCATTAGCTTAGCAAGCTTCTTCAACATCTCCACCCTTGAAAGGGAGAGCACAGATGTGGAGCCTGGGGTTG tagacactccagcctagttaatgtcctgatttctgcttctctccacccagAGTAAAGAAGAGGTTGAAAAACTAAAAATCCAGGCAGAATCCTTCTGCCAACAATTAGGGAAATACCAGATGCCATTCACTTGGAGTCCCATGGGCTTGGCTAGCTTTTTTAACATTCCCACCTTA---CGTGGTAGCACAGATGTGGAGCCAGGGGTGGgtaagattttccctgggacagcacttaggccctccattataggccacctt Alignment from Spaln_nt2Genome AGTAAAGAAAAGGTTGAAAAACTAAAACTTCAAGCTGAATCCTTCTGCCAACGTTTGGGGAAATACCGGATGCCCTTCGCCTGGGCCCCCATTAGCTTAGCAAGCTTCTTCAACATCTCCACCCTTGAAAGGGAGAGCACAGATGTGGAGCCTGGGGTTGG tagacactccagcctagttaatgtcctgatttctgcttctctccacccagAGTAAAGAAGAGGTTGAAAAACTAAAAATCCAGGCAGAATCCTTCTGCCAACAATTAGGGAAATACCAGATGCCATTCACTTGGAGTCCCATGGGCTTGGCTAGCTTTTTTAACATTCCCACCTT---ACGTGGTAGCACAGATGTGGAGCCAGGGG-TGGgtaagattttccctgggacagcacttaggccctccattataggccacctt Alignment from Pairagon AGTAAAGAAAAGGTTGAAAAACTAAAACTTCAAGCTGAATCCTTCTGCCAACGTTTGGGGAAATACCGGATGCCCTTCGCCTGGGCCCCCATTAGCTTAGCAAGCTTCTTCAACATCTCCACCCTTGAAAGGGAGAGCACAGATGTGGAGCCTGGGGTTG tagacactccagcctagttaatgtcctgatttctgcttctctccacccagAGTAAAGAAGAGGTTGAAAAACTAAAAATCCAGGCAGAATCCTTCTGCCAACAATTAGGGAAATACCAGATGCCATTCACTTGGAGTCCCATGGGCTTGGCTAGCTTTTTTAACATTCCCACCTT---ACGTGGTAGCACAGATGTGGAGCCAGGGGTGGgtaagattttccctgggacagcacttaggccctccattataggccacctt Alignment from Exonerate_protein2genome AGTAAAGAAAAGGTTGAAAAACTAAAACTTCAAGCTGAATCCTTCTGCCAACGTTTGGGGAAATACCGGATGCCCTTCGCCTGGGCCCCCATTAGCTTAGCAAGCTTCTTCAACATCTCCACCCTTGAAAGGGAGAGCACAGATGTGGAGCCTGGGGTTG tagacactccagcctagttaatgtcctgatttctgcttctctccacccagAGTAAAGAAGAGGTTGAAAAACTAAAAATCCAGGCAGAATCCTTCTGCCAACAATTAGGGAAATACCAGATGCCATTCACTTGGAGTCCCATGGGCTTGGCTAGCTTTTTTAACATTCCCACCTTA---CGTGGTAGCACAGATGTGGAGCCAGGGGTGGgtaagattttccctgggacagcacttaggccctccattataggccacctt Alignment from Exonerate_coding2genome AGTAAAGAAAAGGTTGAAAAACTAAAACTTCAAGCTGAATCCTTCTGCCAACGTTTGGGGAAATACCGGATGCCCTTCGCCTGGGCCCCCATTAGCTTAGCAAGCTTCTTCAACATCTCCACCCTTGAAAGGGAGAGCACAGATGTGGAGCCTGGGGTTG tagacactccagcctagttaatgtcctgatttctgcttctctccacccagAGTAAAGAAGAGGTTGAAAAACTAAAAATCCAGGCAGAATCCTTCTGCCAACAATTAGGGAAATACCAGATGCCATTCACTTGGAGTCCCATGGGCTTGGCTAGCTTTTTTAACATTCCCACCTTA---CGTGGTAGCACAGATGTGGAGCCAGGGGTGGgtaagattttccctgggacagcacttaggccctccattataggccacctt Alignment from GeneWise AGTAAAGAAAAGGTTGAAAAACTAAAACTTCAAGCTGAATCCTTCTGCCAACGTTTGGGGAAATACCGGATGCCCTTCGCCTGGGCCCCCATTAGCTTAGCAAGCTTCTTCAACATCTCCACCCTTGAAAGGGAGAGCACAGATGTGGAGCCTGGGGTTG tagacactccagcctagttaatgtcctgatttctgcttctctccacccagAGTAAAGAAGAGGTTGAAAAACTAAAAATCCAGGCAGAATCCTTCTGCCAACAATTAGGGAAATACCAGATGCCATTCACTTGGAGTCCCATGGGCTTGGCTAGCTTTTTTAACATTCCCACCTTA---CGTGGTAGCACAGATGTGGAGCCAGGGGTGGgtaagattttccctgggacagcacttaggccctccattataggccacctt #### Dock8_ID5397_18 --> 0 - 0 Original Alignment TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG caactgtatccatactgcaatatactcttacctcttggcatggcccatagTGGCTACCAATTCTGTTAAAGGAACGCCTCCAAACCGGATCTTACTGTTTGCCTGTTACCCTGGAAAAGCTCCCACCTAACTACTCCATTCGTTCAGCTGAGgtgagtaacaatgaggtggtactcaagtatccgcccttcaccatactgtt Alignment from CESAR TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG caactgtatccatactgcaatatactcttacctcttggcatggcccatagTGGCTACCAATTCTGTTAAAGGAACGCCTCCAAACCGGATCTTACTGTTTGCCTGTTACCCTGGAAAAGCTCCCACCTAACTACTCCATTCGTTCAGCTGAGgtgagtaacaatgaggtggtactcaagtatccgcccttcaccatactgtt Alignment from Spaln_aa2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG caactgtatccatactgcaatatactcttacctcttggcatggcccatagTGGCTACCAATTCTGTTAAAGGAACGCCTCCAAACCGGATCTTACTGTTTGCCTGTTACCCTGGAAAAGCTCCCACCTAACTACTCCATTCGTTCAGCTGAGgtgagtaacaatgaggtggtactcaagtatccgcccttcaccatactgtt Alignment from Spaln_nt2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG caactgtatccatactgcaatatactcttacctcttggcatggcccatagTGGCTACCAATTCTGTTAAAGGAACGCCTCCAAACCGGATCTTACTGTTTGCCTGTTACCCTGGAAAAGCTCCCACCTAACTACTCCATTCGTTCAGCTGAGgtgagtaacaatgaggtggtactcaagtatccgcccttcaccatactgtt Alignment from Pairagon TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG caactgtatccatactgcaatatactcttacctcttggcatggcccatagTGGCTACCAATTCTGTTAAAGGAACGCCTCCAAACCGGATCTTACTGTTTGCCTGTTACCCTGGAAAAGCTCCCACCTAACTACTCCATTCGTTCAGCTGAGgtgagtaacaatgaggtggtactcaagtatccgcccttcaccatactgtt Alignment from Exonerate_protein2genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG caactgtatccatactgcaatatactcttacctcttggcatggcccatagTGGCTACCAATTCTGTTAAAGGAACGCCTCCAAACCGGATCTTACTGTTTGCCTGTTACCCTGGAAAAGCTCCCACCTAACTACTCCATTCGTTCAGCTGAGgtgagtaacaatgaggtggtactcaagtatccgcccttcaccatactgtt Alignment from Exonerate_coding2genome caactgtatccatactgcaatatactcttacctcttggcatggcccatagtggctaccaattctgttaaaggaacgcctccaaaccggatcttactgtttgcctgttaccctggaaaagctcccacctaactactccattcgttcagctgaggtgagtaacaatgaggtggtactcaagtatccgcccttcaccatactgtt Alignment from GeneWise TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG caactgtatccatactgcaatatactcttacctcttggcatggcccatagTGGCTACCAATTCTGTTAAAGGAACGCCTCCAAACCGGATCTTACTGTTTGCCTGTTACCCTGGAAAAGCTCCCACCTAACTACTCCATTCGTTCAGCTGAGgtgagtaacaatgaggtggtactcaagtatccgcccttcaccatactgtt #### Dock8_ID5400_21 --> 2 - 1 Original Alignment caAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAg cctcaacaaacttgctattgtaaatagcaagtgtttttcttcccccacagcaAACTTCTCCCAATTTGCCTATGAGACAGTAGTTGCCATTGTAAATAGCTTGCATAACAGCAAGGACTTGTGCAAAGACCAGCATAGCAGGAATTGTCTCTTGGCATCCTCTGTGCAATATGTTTTCCGTCTGCCAGAACTGCAAAGGGATACATCCAAGTCAggtgtgtatctggttgagagagttggatattctattgagactggcaacaca Alignment from CESAR caAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAg cctcaacaaacttgctattgtaaatagcaagtgtttttcttcccccacagcaAACTTCTCCCAATTTGCCTATGAGACAGTAGTTGCCATTGTAAATAGCTTGCATAACAGCAAGGACTTGTGCAAAGACCAGCATAGCAGGAATTGTCTCTTGGCATCCTCTGTGCAATATGTTTTCCGTCTGCCAGAACTGCAAAGGGATACATCCAAGTCAggtgtgtatctggttgagagagttggatattctattgagactggcaacaca Alignment from Spaln_aa2Genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG cctcaacaaacttgctattgtaaatagcaagtgtttttcttcccccacagCAAACTTCTCCCAATTTGCCTATGAGACAGTAGTTGCCATTGTAAATAGCTTGCATAACAGCAAGGACTTGTGCAAAGACCAGCATAGCAGGAATTGTCTCTTGGCATCCTCTGTGCAATATGTTTTCCGTCTGCCAGAACTGCAAAGGGATACATCCAAGTCAGgtgtgtatctggttgagagagttggatattctattgagactggcaacaca Alignment from Spaln_nt2Genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG cctcaacaaacttgctattgtaaatagcaagtgtttttcttcccccacagCAAACTTCTCCCAATTTGCCTATGAGACAGTAGTTGCCATTGTAAATAGCTTGCATAACAGCAAGGACTTGTGCAAAGACCAGCATAGCAGGAATTGTCTCTTGGCATCCTCTGTGCAATATGTTTTCCGTCTGCCAGAACTGCAAAGGGATACATCCAAGTCAGgtgtgtatctggttgagagagttggatattctattgagactggcaacaca Alignment from Pairagon CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG cctcaacaaacttgctattgtaaatagcaagtgtttttcttcccccacagCAAACTTCTCCCAATTTGCCTATGAGACAGTAGTTGCCATTGTAAATAGCTTGCATAACAGCAAGGACTTGTGCAAAGACCAGCATAGCAGGAATTGTCTCTTGGCATCCTCTGTGCAATATGTTTTCCGTCTGCCAGAACTGCAAAGGGATACATCCAAGTCAGgtgtgtatctggttgagagagttggatattctattgagactggcaacaca Alignment from Exonerate_protein2genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG cctcaacaaacttgctattgtaaatagcaagtgtttttcttcccccacagCAAACTTCTCCCAATTTGCCTATGAGACAGTAGTTGCCATTGTAAATAGCTTGCATAACAGCAAGGACTTGTGCAAAGACCAGCATAGCAGGAATTGTCTCTTGGCATCCTCTGTGCAATATGTTTTCCGTCTGCCAGAACTGCAAAGGGATACATCCAAGTCAGgtgtgtatctggttgagagagttggatattctattgagactggcaacaca Alignment from Exonerate_coding2genome cctcaacaaacttgctattgtaaatagcaagtgtttttcttcccccacagcaaacttctcccaatttgcctatgagacagtagttgccattgtaaatagcttgcataacagcaaggacttgtgcaaagaccagcatagcaggaattgtctcttggcatcctctgtgcaatatgttttccgtctgccagaactgcaaagggatacatccaagtcaggtgtgtatctggttgagagagttggatattctattgagactggcaacaca Alignment from GeneWise CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG cctcaacaaacttgctattgtaaatagcaagtgtttttcttcccccacagCAAACTTCTCCCAATTTGCCTATGAGACAGTAGTTGCCATTGTAAATAGCTTGCATAACAGCAAGGACTTGTGCAAAGACCAGCATAGCAGGAATTGTCTCTTGGCATCCTCTGTGCAATATGTTTTCCGTCTGCCAGAACTGCAAAGGGATACATCCAAGTCAGgtgtgtatctggttgagagagttggatattctattgagactggcaacaca #### Dock8_ID5410_29 --> 1 - 1 Original Alignment aATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAg tgctttgtcagtaactgtgcctatgctagactcttccctccctcatctaggATCAGCAGAATCTGCAGAAGAGCTGTAAGTGCTATCCATAGTATC------CCATATGATCTGGATCCTCAGTGTTGCAAGCCAGAGGTCAAAATCAAAATTGCTGCTCTGTATTTACCCTTGGTTGGTATCATCCTAGACACCCTCCCACAATTATATGACTTTCCAggtgagggtccatccgtgctaagcagttcaaaaacaagcctagcttacgcc Alignment from CESAR aATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAg tgctttgtcagtaactgtgcctatgctagactcttccctccctcatctaggATCAGCAGAATCTGCAGAAGAGCTGTAAGTGCTATCCATAGTATC------CCATATGATCTGGATCCTCAGTGTTGCAAGCCAGAGGTCAAAATCAAAATTGCTGCTCTGTATTTACCCTTGGTTGGTATCATCCTAGACACCCTCCCACAATTATATGACTTTCCAggtgagggtccatccgtgctaagcagttcaaaaacaagcctagcttacgcc Alignment from Spaln_aa2Genome AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG tgctttgtcagtaactgtgcctatgctagactcttccctccctcatctagGATCAGCAGAATCTGCAGAAGAGCTGTAAGTGCTATCCATAGTATC------CCATATGATCTGGATCCTCAGTGTTGCAAGCCAGAGGTCAAAATCAAAATTGCTGCTCTGTATTTACCCTTGGTTGGTATCATCCTAGACACCCTCCCACAATTATATGACTTTCCAGgtgagggtccatccgtgctaagcagttcaaaaacaagcctagcttacgcc Alignment from Spaln_nt2Genome AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG tgctttgtcagtaactgtgcctatgctagactcttccctccctcatctagGATCAGCAGAATCTGCAGAAGAGCTGTAAGTGCTATCCATAGTATCC------CATATGATCTGGATCCTCAGTGTTGCAAGCCAGAGGTCAAAATCAAAATTGCTGCTCTGTATTTACCCTTGGTTGGTATCATCCTAGACACCCTCCCACAATTATATGACTTTCCAGgtgagggtccatccgtgctaagcagttcaaaaacaagcctagcttacgcc Alignment from Pairagon AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG tgctttgtcagtaactgtgcctatgctagactcttccctccctcatctagGATCAGCAGAATCTGCAGAAGAGCTGTAAGTGCTATCCATAGTATCCCAT------ATGATCTGGATCCTCAGTGTTGCAAGCCAGAGGTCAAAATCAAAATTGCTGCTCTGTATTTACCCTTGGTTGGTATCATCCTAGACACCCTCCCACAATTATATGACTTTCCAGgtgagggtccatccgtgctaagcagttcaaaaacaagcctagcttacgcc Alignment from Exonerate_protein2genome AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG tgctttgtcagtaactgtgcctatgctagactcttccctccctcatctagGATCAGCAGAATCTGCAGAAGAGCTGTAAGTGCTATCCATAGTATC------CCATATGATCTGGATCCTCAGTGTTGCAAGCCAGAGGTCAAAATCAAAATTGCTGCTCTGTATTTACCCTTGGTTGGTATCATCCTAGACACCCTCCCACAATTATATGACTTTCCAGgtgagggtccatccgtgctaagcagttcaaaaacaagcctagcttacgcc Alignment from Exonerate_coding2genome AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG tgctttgtcagtaactgtgcctatgctagactcttccctccctcatctagGATCAGCAGAATCTGCAGAAGAGCTGTAAGTGCTATCCATAGTATC------CCATATGATCTGGATCCTCAGTGTTGCAAGCCAGAGGTCAAAATCAAAATTGCTGCTCTGTATTTACCCTTGGTTGGTATCATCCTAGACACCCTCCCACAATTATATGACTTTCCAGgtgagggtccatccgtgctaagcagttcaaaaacaagcctagcttacgcc Alignment from GeneWise AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG tgctttgtcagtaactgtgcctatgctagactcttccctccctcatctagGATCAGCAGAATCTGCAGAAGAGCTGTAAGTGCTATCCATAGTATC------CCATATGATCTGGATCCTCAGTGTTGCAAGCCAGAGGTCAAAATCAAAATTGCTGCTCTGTATTTACCCTTGGTTGGTATCATCCTAGACACCCTCCCACAATTATATGACTTTCCAGgtgagggtccatccgtgctaagcagttcaaaaacaagcctagcttacgcc #### Dock8_ID5420_38 --> 0 - 2 Original Alignment GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACag tattgacttttttcaggacacctcatcatcattaatcttgtattttacagGTGGAAAAACTTCTGTGCAATCTCAACAGCATTCTATACGACCCAGTCAAGATGAAGGAATTCCAAGAAGATCCTCATATGCTTACAGACCTTAAGTACaagtgaatgttgtttgacaaagaaatttgactaaatgataatggacctaatg Alignment from CESAR GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACag tattgacttttttcaggacacctcatcatcattaatcttgtattttacagGTGGAAAAACTTCTGTGCAATCTCAACAGCATTCTATACGACCCAGTCAAGATGAAGGAATTCCAAGAAGATCCTCATATGCTTACAGACCTTAAGTACaagtgaatgttgtttgacaaagaaatttgactaaatgataatggacctaatg Alignment from Spaln_aa2Genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG tattgacttttttcaggacacctcatcatcattaatcttgtattttacagGTGGAAAAACTTCTGTGCAATCTCAACAGCATTCTATACGACCCAGTCAAGATGAAGGAATTCCAAGAAGATCCTCATATGCTTACAGACCTTAAGTACAAgtgaatgttgtttgacaaagaaatttgactaaatgataatggacctaatg Alignment from Spaln_nt2Genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG tattgacttttttcaggacacctcatcatcattaatcttgtattttacagGTGGAAAAACTTCTGTGCAATCTCAACAGCATTCTATACGACCCAGTCAAGATGAAGGAATTCCAAGAAGATCCTCATATGCTTACAGACCTTAAGTACAAgtgaatgttgtttgacaaagaaatttgactaaatgataatggacctaatg Alignment from Pairagon GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG tattgacttttttcaggacacctcatcatcattaatcttgtattttacagGTGGAAAAACTTCTGTGCAATCTCAACAGCATTCTATACGACCCAGTCAAGATGAAGGAATTCCAAGAAGATCCTCATATGCTTACAGACCTTAAGTACAAgtgaatgttgtttgacaaagaaatttgactaaatgataatggacctaatg Alignment from Exonerate_protein2genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG tattgacttttttcaggacacctcatcatcattaatcttgtattttacagGTGGAAAAACTTCTGTGCAATCTCAACAGCATTCTATACGACCCAGTCAAGATGAAGGAATTCCAAGAAGATCCTCATATGCTTACAGACCTTAAGTACAAgtgaatgttgtttgacaaagaaatttgactaaatgataatggacctaatg Alignment from Exonerate_coding2genome tattgacttttttcaggacacctcatcatcattaatcttgtattttacaggtggaaaaacttctgtgcaatctcaacagcattctatacgacccagtcaagatgaaggaattccaagaagatcctcatatgcttacagaccttaagtacaagtgaatgttgtttgacaaagaaatttgactaaatgataatggacctaatg Alignment from GeneWise GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG tattgacttttttcaggacacctcatcatcattaatcttgtattttacagGTGGAAAAACTTCTGTGCAATCTCAACAGCATTCTATACGACCCAGTCAAGATGAAGGAATTCCAAGAAGATCCTCATATGCTTACAGACCTTAAGTACAAgtgaatgttgtttgacaaagaaatttgactaaatgataatggacctaatg #### Dock8_ID5428_46 --> 0 - 2 Original Alignment GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcg gggcacttcaggcttgtcagaccaccctcctgtcttctttcctggcccagGGACCACTGGAGGTAACTCAAGTGTTCTTGGCTGAAATTCTAGCTGATCCCAAACTGTACCAACACCACAACAAGCTGAAGTTGTGCTTCAAGGAGTTCATAATGcggtaatgatagagctggtggctactaaagtacaattacatgagtgttacat Alignment from CESAR GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcg gggcacttcaggcttgtcagaccaccctcctgtcttctttcctggcccagGGACCACTGGAGGTAACTCAAGTGTTCTTGGCTGAAATTCTAGCTGATCCCAAACTGTACCAACACCACAACAAGCTGAAGTTGTGCTTCAAGGAGTTCATAATGcggtaatgatagagctggtggctactaaagtacaattacatgagtgttacat Alignment from Spaln_aa2Genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggcacttcaggcttgtcagaccaccctcctgtcttctttcctggcccagGGACCACTGGAGGTAACTCAAGTGTTCTTGGCTGAAATTCTAGCTGATCCCAAACTGTACCAACACCACAACAAGCTGAAGTTGTGCTTCAAGGAGTTCATAATGCGgtaatgatagagctggtggctactaaagtacaattacatgagtgttacat Alignment from Spaln_nt2Genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggcacttcaggcttgtcagaccaccctcctgtcttctttcctggcccagGGACCACTGGAGGTAACTCAAGTGTTCTTGGCTGAAATTCTAGCTGATCCCAAACTGTACCAACACCACAACAAGCTGAAGTTGTGCTTCAAGGAGTTCATAATGCGgtaatgatagagctggtggctactaaagtacaattacatgagtgttacat Alignment from Pairagon GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggcacttcaggcttgtcagaccaccctcctgtcttctttcctggcccagGGACCACTGGAGGTAACTCAAGTGTTCTTGGCTGAAATTCTAGCTGATCCCAAACTGTACCAACACCACAACAAGCTGAAGTTGTGCTTCAAGGAGTTCATAATGCGgtaatgatagagctggtggctactaaagtacaattacatgagtgttacat Alignment from Exonerate_protein2genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggcacttcaggcttgtcagaccaccctcctgtcttctttcctggcccagGGACCACTGGAGGTAACTCAAGTGTTCTTGGCTGAAATTCTAGCTGATCCCAAACTGTACCAACACCACAACAAGCTGAAGTTGTGCTTCAAGGAGTTCATAATGCGgtaatgatagagctggtggctactaaagtacaattacatgagtgttacat Alignment from Exonerate_coding2genome gggcacttcaggcttgtcagaccaccctcctgtcttctttcctggcccagggaccactggaggtaactcaagtgttcttggctgaaattctagctgatcccaaactgtaccaacaccacaacaagctgaagttgtgcttcaaggagttcataatgcggtaatgatagagctggtggctactaaagtacaattacatgagtgttacat Alignment from GeneWise GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggcacttcaggcttgtcagaccaccctcctgtcttctttcctggcccagGGACCACTGGAGGTAACTCAAGTGTTCTTGGCTGAAATTCTAGCTGATCCCAAACTGTACCAACACCACAACAAGCTGAAGTTGTGCTTCAAGGAGTTCATAATGCGgtaatgatagagctggtggctactaaagtacaattacatgagtgttacat #### Dpcd_ID9496_3 --> 2 - 0 Original Alignment tgAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT cactgcatttatgcttttcccttgggctactttccctttctcctctacagtgCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCTTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGCACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtatgcgtgcctgtgtctgttcaagggttgctgaagaccccagatagaag Alignment from CESAR tgAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT cactgcatttatgcttttcccttgggctactttccctttctcctctacagtgCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCTTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGCACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtatgcgtgcctgtgtctgttcaagggttgctgaagaccccagatagaag Alignment from Spaln_aa2Genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT cactgcatttatgcttttcccttgggctactttccctttctcctctacagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCTTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGCACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtatgcgtgcctgtgtctgttcaagggttgctgaagaccccagatagaag Alignment from Spaln_nt2Genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT cactgcatttatgcttttcccttgggctactttccctttctcctctacagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCTTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGCACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtatgcgtgcctgtgtctgttcaagggttgctgaagaccccagatagaag Alignment from Pairagon TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT cactgcatttatgcttttcccttgggctactttccctttctcctctacagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCTTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGCACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtatgcgtgcctgtgtctgttcaagggttgctgaagaccccagatagaag Alignment from Exonerate_protein2genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT cactgcatttatgcttttcccttgggctactttccctttctcctctacagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCTTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGCACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtatgcgtgcctgtgtctgttcaagggttgctgaagaccccagatagaag Alignment from Exonerate_coding2genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT cactgcatttatgcttttcccttgggctactttccctttctcctctacagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCTTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGCACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtatgcgtgcctgtgtctgttcaagggttgctgaagaccccagatagaag Alignment from GeneWise TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT cactgcatttatgcttttcccttgggctactttccctttctcctctacagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCTTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGCACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtatgcgtgcctgtgtctgttcaagggttgctgaagaccccagatagaag #### Dpcd_ID9497_4 --> 0 - 2 Original Alignment CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAaa caataagaggggtcagaggagaggttatgcctttatctctctttctccagCCAATTTTTACATGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGCCCCAGAGAGAACGCTGTGTGATCACTCGTATGACAAACAAAaagtaagtcgcatgtgtccaccaattcagtgttgtgtcaatgatggagtgtg Alignment from CESAR CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAaa caataagaggggtcagaggagaggttatgcctttatctctctttctccagCCAATTTTTACATGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGCCCCAGAGAGAACGCTGTGTGATCACTCGTATGACAAACAAAaagtaagtcgcatgtgtccaccaattcagtgttgtgtcaatgatggagtgtg Alignment from Spaln_aa2Genome CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA caataagaggggtcagaggagaggttatgcctttatctctctttctccagCCAATTTTTACATGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGCCCCAGAGAGAACGCTGTGTGATCACTCGTATGACAAACAAAAAgtaagtcgcatgtgtccaccaattcagtgttgtgtcaatgatggagtgtg Alignment from Spaln_nt2Genome CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA caataagaggggtcagaggagaggttatgcctttatctctctttctccagCCAATTTTTACATGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGCCCCAGAGAGAACGCTGTGTGATCACTCGTATGACAAACAAAAAgtaagtcgcatgtgtccaccaattcagtgttgtgtcaatgatggagtgtg Alignment from Pairagon CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA caataagaggggtcagaggagaggttatgcctttatctctctttctccagCCAATTTTTACATGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGCCCCAGAGAGAACGCTGTGTGATCACTCGTATGACAAACAAAAAgtaagtcgcatgtgtccaccaattcagtgttgtgtcaatgatggagtgtg Alignment from Exonerate_protein2genome CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA caataagaggggtcagaggagaggttatgcctttatctctctttctccagCCAATTTTTACATGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGCCCCAGAGAGAACGCTGTGTGATCACTCGTATGACAAACAAAAAgtaagtcgcatgtgtccaccaattcagtgttgtgtcaatgatggagtgtg Alignment from Exonerate_coding2genome CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA caataagaggggtcagaggagaggttatgcctttatctctctttctccagCCAATTTTTACATGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGCCCCAGAGAGAACGCTGTGTGATCACTCGTATGACAAACAAAAAgtaagtcgcatgtgtccaccaattcagtgttgtgtcaatgatggagtgtg Alignment from GeneWise CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA caataagaggggtcagaggagaggttatgcctttatctctctttctccagCCAATTTTTACATGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGCCCCAGAGAGAACGCTGTGTGATCACTCGTATGACAAACAAAAAgtaagtcgcatgtgtccaccaattcagtgttgtgtcaatgatggagtgtg #### Dpf2_ID1303_10 --> 0 - 1 Original Alignment GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAg accagtaatggagccaaagcatacacgcaagttgtaactattttttccagGGACAGCTCGTTTTTTGTGATGATTGTGACCATGGTTACTATATGTTCTGTCCCACCCCTTCCATACCTGAGCCTCCTAAAggtaagaaacatgtccaatctccttaactcaaactattttacgacagataa Alignment from CESAR GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAg accagtaatggagccaaagcatacacgcaagttgtaactattttttccagGGACAGCTCGTTTTTTGTGATGATTGTGACCATGGTTACTATATGTTCTGTCCCACCCCTTCCATACCTGAGCCTCCTAAAggtaagaaacatgtccaatctccttaactcaaactattttacgacagataa Alignment from Spaln_aa2Genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG accagtaatggagccaaagcatacacgcaagttgtaactattttttccagGGACAGCTCGTTTTTTGTGATGATTGTGACCATGGTTACTATATGTTCTGTCCCACCCCTTCCATACCTGAGCCTCCTAAAGgtaagaaacatgtccaatctccttaactcaaactattttacgacagataa Alignment from Spaln_nt2Genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG accagtaatggagccaaagcatacacgcaagttgtaactattttttccagGGACAGCTCGTTTTTTGTGATGATTGTGACCATGGTTACTATATGTTCTGTCCCACCCCTTCCATACCTGAGCCTCCTAAAGgtaagaaacatgtccaatctccttaactcaaactattttacgacagataa Alignment from Pairagon GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG accagtaatggagccaaagcatacacgcaagttgtaactattttttccagGGACAGCTCGTTTTTTGTGATGATTGTGACCATGGTTACTATATGTTCTGTCCCACCCCTTCCATACCTGAGCCTCCTAAAGgtaagaaacatgtccaatctccttaactcaaactattttacgacagataa Alignment from Exonerate_protein2genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG accagtaatggagccaaagcatacacgcaagttgtaactattttttccagGGACAGCTCGTTTTTTGTGATGATTGTGACCATGGTTACTATATGTTCTGTCCCACCCCTTCCATACCTGAGCCTCCTAAAGgtaagaaacatgtccaatctccttaactcaaactattttacgacagataa Alignment from Exonerate_coding2genome accagtaatggagccaaagcatacacgcaagttgtaactattttttccagggacagctcgttttttgtgatgattgtgaccatggttactatatgttctgtcccaccccttccatacctgagcctcctaaaggtaagaaacatgtccaatctccttaactcaaactattttacgacagataa Alignment from GeneWise GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG accagtaatggagccaaagcatacacgcaagttgtaactattttttccagGGACAGCTCGTTTTTTGTGATGATTGTGACCATGGTTACTATATGTTCTGTCCCACCCCTTCCATACCTGAGCCTCCTAAAGgtaagaaacatgtccaatctccttaactcaaactattttacgacagataa #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ataacaaagtggggctcagcaaaaaagagccttctctcacttctgaccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTTGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtaacttactatacaccccatgccaaaggcttgactctatattgtt #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gaaagcaatcccaaccattcaagggtcatggtctgttgtgttccccgcagGATGAGAAAGGAGCTTTCAATTTTGATGAGGAACCAGTGATCAACCCTGAGACCAGCGAGCAGgtgagaagaacattcgttatgaggaaattacagttgggtccatggtcaag Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gaaagcaatcccaaccattcaagggtcatggtctgttgtgttccccgcagGATGAGAAAGGAGCTTTCAATTTTGATGAGGAACCAGTGATCAACCCTGAGACCAGCGAGCAGgtgagaagaacattcgttatgaggaaattacagttgggtccatggtcaag Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gaaagcaatcccaaccattcaagggtcatggtctgttgtgttccccgcagGATGAGAAAGGAGCTTTCAATTTTGATGAGGAACCAGTGATCAACCCTGAGACCAGCGAGCAGgtgagaagaacattcgttatgaggaaattacagttgggtccatggtcaag Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gaaagcaatcccaaccattcaagggtcatggtctgttgtgttccccgcagGATGAGAAAGGAGCTTTCAATTTTGATGAGGAACCAGTGATCAACCCTGAGACCAGCGAGCAGgtgagaagaacattcgttatgaggaaattacagttgggtccatggtcaag Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gaaagcaatcccaaccattcaagggtcatggtctgttgtgttccccgcagGATGAGAAAGGAGCTTTCAATTTTGATGAGGAACCAGTGATCAACCCTGAGACCAGCGAGCAGgtgagaagaacattcgttatgaggaaattacagttgggtccatggtcaag Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gaaagcaatcccaaccattcaagggtcatggtctgttgtgttccccgcagGATGAGAAAGGAGCTTTCAATTTTGATGAGGAACCAGTGATCAACCCTGAGACCAGCGAGCAGgtgagaagaacattcgttatgaggaaattacagttgggtccatggtcaag Alignment from Exonerate_coding2genome gaaagcaatcccaaccattcaagggtcatggtctgttgtgttccccgcaggatgagaaaggagctttcaattttgatgaggaaccagtgatcaaccctgagaccagcgagcaggtgagaagaacattcgttatgaggaaattacagttgggtccatggtcaag Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gaaagcaatcccaaccattcaagggtcatggtctgttgtgttccccgcagGATGAGAAAGGAGCTTTCAATTTTGATGAGGAACCAGTGATCAACCCTGAGACCAGCGAGCAGgtgagaagaacattcgttatgaggaaattacagttgggtccatggtcaag #### Dpp3_ID749_4 --> 0 - 0 Original Alignment GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ctgtcagtatcaacatgcaattctctcagtcttgtgtttttcccctctagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCCCAGGATTTCCTGGACTCTCGTgtaattgctcagaattggtattctggctaaacattttccaattgagtgtc Alignment from CESAR GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ctgtcagtatcaacatgcaattctctcagtcttgtgtttttcccctctagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCCCAGGATTTCCTGGACTCTCGTgtaattgctcagaattggtattctggctaaacattttccaattgagtgtc Alignment from Spaln_aa2Genome GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ctgtcagtatcaacatgcaattctctcagtcttgtgtttttcccctctagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCCCAGGATTTCCTGGACTCTCGTgtaattgctcagaattggtattctggctaaacattttccaattgagtgtc Alignment from Spaln_nt2Genome GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ctgtcagtatcaacatgcaattctctcagtcttgtgtttttcccctctagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCCCAGGATTTCCTGGACTCTCGTgtaattgctcagaattggtattctggctaaacattttccaattgagtgtc Alignment from Pairagon GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ctgtcagtatcaacatgcaattctctcagtcttgtgtttttcccctctagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCCCAGGATTTCCTGGACTCTCGTgtaattgctcagaattggtattctggctaaacattttccaattgagtgtc Alignment from Exonerate_protein2genome GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ctgtcagtatcaacatgcaattctctcagtcttgtgtttttcccctctagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCCCAGGATTTCCTGGACTCTCGTgtaattgctcagaattggtattctggctaaacattttccaattgagtgtc Alignment from Exonerate_coding2genome GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ctgtcagtatcaacatgcaattctctcagtcttgtgtttttcccctctagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCCCAGGATTTCCTGGACTCTCGTgtaattgctcagaattggtattctggctaaacattttccaattgagtgtc Alignment from GeneWise GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ctgtcagtatcaacatgcaattctctcagtcttgtgtttttcccctctagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCCCAGGATTTCCTGGACTCTCGTgtaattgctcagaattggtattctggctaaacattttccaattgagtgtc #### Dpp3_ID750_3 --> 0 - 0 Original Alignment GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG acttacatgaaggggggaatggttagtccatgcatgctctttctttccagGATAAGCTTGGGCGTGTAATCCTGGGGAGTAAACCTGCTGAGCAACAGCCTGGAGAACTCAAAGATCTCTGGCAGACCTGTGGTGACCTTATGTTTGCCCTAGAGCCAAGGCTTCGACATCTTGGACTAGGGAAGGAGgtagaccctgtagaaaaggataggcactttgagactacctctaggtattt Alignment from CESAR GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG acttacatgaaggggggaatggttagtccatgcatgctctttctttccagGATAAGCTTGGGCGTGTAATCCTGGGGAGTAAACCTGCTGAGCAACAGCCTGGAGAACTCAAAGATCTCTGGCAGACCTGTGGTGACCTTATGTTTGCCCTAGAGCCAAGGCTTCGACATCTTGGACTAGGGAAGGAGgtagaccctgtagaaaaggataggcactttgagactacctctaggtattt Alignment from Spaln_aa2Genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG acttacatgaaggggggaatggttagtccatgcatgctctttctttccagGATAAGCTTGGGCGTGTAATCCTGGGGAGTAAACCTGCTGAGCAACAGCCTGGAGAACTCAAAGATCTCTGGCAGACCTGTGGTGACCTTATGTTTGCCCTAGAGCCAAGGCTTCGACATCTTGGACTAGGGAAGGAGgtagaccctgtagaaaaggataggcactttgagactacctctaggtattt Alignment from Spaln_nt2Genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG acttacatgaaggggggaatggttagtccatgcatgctctttctttccagGATAAGCTTGGGCGTGTAATCCTGGGGAGTAAACCTGCTGAGCAACAGCCTGGAGAACTCAAAGATCTCTGGCAGACCTGTGGTGACCTTATGTTTGCCCTAGAGCCAAGGCTTCGACATCTTGGACTAGGGAAGGAGgtagaccctgtagaaaaggataggcactttgagactacctctaggtattt Alignment from Pairagon GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG acttacatgaaggggggaatggttagtccatgcatgctctttctttccagGATAAGCTTGGGCGTGTAATCCTGGGGAGTAAACCTGCTGAGCAACAGCCTGGAGAACTCAAAGATCTCTGGCAGACCTGTGGTGACCTTATGTTTGCCCTAGAGCCAAGGCTTCGACATCTTGGACTAGGGAAGGAGgtagaccctgtagaaaaggataggcactttgagactacctctaggtattt Alignment from Exonerate_protein2genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG acttacatgaaggggggaatggttagtccatgcatgctctttctttccagGATAAGCTTGGGCGTGTAATCCTGGGGAGTAAACCTGCTGAGCAACAGCCTGGAGAACTCAAAGATCTCTGGCAGACCTGTGGTGACCTTATGTTTGCCCTAGAGCCAAGGCTTCGACATCTTGGACTAGGGAAGGAGgtagaccctgtagaaaaggataggcactttgagactacctctaggtattt Alignment from Exonerate_coding2genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG acttacatgaaggggggaatggttagtccatgcatgctctttctttccagGATAAGCTTGGGCGTGTAATCCTGGGGAGTAAACCTGCTGAGCAACAGCCTGGAGAACTCAAAGATCTCTGGCAGACCTGTGGTGACCTTATGTTTGCCCTAGAGCCAAGGCTTCGACATCTTGGACTAGGGAAGGAGgtagaccctgtagaaaaggataggcactttgagactacctctaggtattt Alignment from GeneWise GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG acttacatgaaggggggaatggttagtccatgcatgctctttctttccagGATAAGCTTGGGCGTGTAATCCTGGGGAGTAAACCTGCTGAGCAACAGCCTGGAGAACTCAAAGATCTCTGGCAGACCTGTGGTGACCTTATGTTTGCCCTAGAGCCAAGGCTTCGACATCTTGGACTAGGGAAGGAGgtagaccctgtagaaaaggataggcactttgagactacctctaggtattt #### Drap1_ID988_2 --> 0 - 1 Original Alignment GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt cttcctccatatcttgggggtacagtgtgaccttgcactgtcccttctagACGCGGATCACAAAGATCATGCAGACCGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATTATTtgtatccacctcaaggttattctgaggtggagttattccacacacctctgt Alignment from CESAR GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt cttcctccatatcttgggggtacagtgtgaccttgcactgtcccttctagACGCGGATCACAAAGATCATGCAGACCGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATTATTtgtatccacctcaaggttattctgaggtggagttattccacaccagtggtg Alignment from Spaln_aa2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT cttcctccatatcttgggggtacagtgtgaccttgcactgtcccttctagACGCGGATCACAAAGATCATGCAGACCGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATTATTTgtatccacctcaaggttattctgaggtggagttattccacacacctctgt Alignment from Spaln_nt2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT cttcctccatatcttgggggtacagtgtgaccttgcactgtcccttctagACGCGGATCACAAAGATCATGCAGACCGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATTATTTgtatccacctcaaggttattctgaggtggagttattccacacacctctgt Alignment from Pairagon GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT cttcctccatatcttgggggtacagtgtgaccttgcactgtcccttctagACGCGGATCACAAAGATCATGCAGACCGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATTATTTgtatccacctcaaggttattctgaggtggagttattccacacacctctgt Alignment from Exonerate_protein2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT cttcctccatatcttgggggtacagtgtgaccttgcactgtcccttctagACGCGGATCACAAAGATCATGCAGACCGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATTATTTgtatccacctcaaggttattctgaggtggagttattccacacacctctgt Alignment from Exonerate_coding2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT cttcctccatatcttgggggtacagtgtgaccttgcactgtcccttctagACGCGGATCACAAAGATCATGCAGACCGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATTATTTgtatccacctcaaggttattctgaggtggagttattccacacacctctgt Alignment from GeneWise GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT cttcctccatatcttgggggtacagtgtgaccttgcactgtcccttctagACGCGGATCACAAAGATCATGCAGACCGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATTATTTgtatccacctcaaggttattctgaggtggagttattccacacacctctgt #### Dtx4_ID3399_5 --> 2 - 0 Original Alignment gtAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG ggagaaccactgctccattcaaagctgtactgtgtgtatttccttgacaggaAAAACACCTGAGGGAGTGTTGAAAAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAAgtaagctggaaggtgtgggcaatcagtttcttaggcataagtactacgtc Alignment from CESAR gtAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG ggagaaccactgctccattcaaagctgtactgtgtgtatttccttgacaggaAAAACACCTGAGGGAGTGTTGAAAAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAAgtaagctggaaggtgtgggcaatcagtttcttaggcataagtactacgtc Alignment from Spaln_aa2Genome GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG ggagaaccactgctccattcaaagctgtactgtgtgtatttccttgacagGAAAAACACCTGAGGGAGTGTTGAAAAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAAgtaagctggaaggtgtgggcaatcagtttcttaggcataagtactacgtc Alignment from Spaln_nt2Genome GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG ggagaaccactgctccattcaaagctgtactgtgtgtatttccttgacagGAAAAACACCTGAGGGAGTGTTGAAAAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAAgtaagctggaaggtgtgggcaatcagtttcttaggcataagtactacgtc Alignment from Pairagon GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG ggagaaccactgctccattcaaagctgtactgtgtgtatttccttgacagGAAAAACACCTGAGGGAGTGTTGAAAAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAAgtaagctggaaggtgtgggcaatcagtttcttaggcataagtactacgtc Alignment from Exonerate_protein2genome GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG ggagaaccactgctccattcaaagctgtactgtgtgtatttccttgacagGAAAAACACCTGAGGGAGTGTTGAAAAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAAgtaagctggaaggtgtgggcaatcagtttcttaggcataagtactacgtc Alignment from Exonerate_coding2genome GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG ggagaaccactgctccattcaaagctgtactgtgtgtatttccttgacagGAAAAACACCTGAGGGAGTGTTGAAAAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAAgtaagctggaaggtgtgggcaatcagtttcttaggcataagtactacgtc Alignment from GeneWise GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG ggagaaccactgctccattcaaagctgtactgtgtgtatttccttgacagGAAAAACACCTGAGGGAGTGTTGAAAAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAAgtaagctggaaggtgtgggcaatcagtttcttaggcataagtactacgtc #### Eef1g_ID2560_2 --> 0 - 0 Original Alignment ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG atgttcctcacacagacactgtacacatatgcttcttttttgttttgtagTCACTGTACACCTACTCTGAGAATTGGAAGGCATTCAAAGCACTAATCGCTGCTCAGTACAGTGGTGCTCAGGTCCGAGTGCTCTCTGCCCCTCCCTATTTCCACTTTGGTCAAACAAATCGAACCCCTGAATTTCTCCGAAAATTTCCCGCTGGCAAAgtgagtcgtgtagcttgtctagtggtcatgatatcatgaaaatttagatc Alignment from CESAR ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG atgttcctcacacagacactgtacacatatgcttcttttttgttttgtagTCACTGTACACCTACTCTGAGAATTGGAAGGCATTCAAAGCACTAATCGCTGCTCAGTACAGTGGTGCTCAGGTCCGAGTGCTCTCTGCCCCTCCCTATTTCCACTTTGGTCAAACAAATCGAACCCCTGAATTTCTCCGAAAATTTCCCGCTGGCAAAgtgagtcgtgtagcttgtctagtggtcatgatatcatgaaaatttagatc Alignment from Spaln_aa2Genome ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG atgttcctcacacagacactgtacacatatgcttcttttttgttttgtagTCACTGTACACCTACTCTGAGAATTGGAAGGCATTCAAAGCACTAATCGCTGCTCAGTACAGTGGTGCTCAGGTCCGAGTGCTCTCTGCCCCTCCCTATTTCCACTTTGGTCAAACAAATCGAACCCCTGAATTTCTCCGAAAATTTCCCGCTGGCAAAgtgagtcgtgtagcttgtctagtggtcatgatatcatgaaaatttagatc Alignment from Spaln_nt2Genome ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG atgttcctcacacagacactgtacacatatgcttcttttttgttttgtagTCACTGTACACCTACTCTGAGAATTGGAAGGCATTCAAAGCACTAATCGCTGCTCAGTACAGTGGTGCTCAGGTCCGAGTGCTCTCTGCCCCTCCCTATTTCCACTTTGGTCAAACAAATCGAACCCCTGAATTTCTCCGAAAATTTCCCGCTGGCAAAgtgagtcgtgtagcttgtctagtggtcatgatatcatgaaaatttagatc Alignment from Pairagon CTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG atgttcctcacacagacactgtacacatatgcttcttttttgttttgtagtcaCTGTACACCTACTCTGAGAATTGGAAGGCATTCAAAGCACTAATCGCTGCTCAGTACAGTGGTGCTCAGGTCCGAGTGCTCTCTGCCCCTCCCTATTTCCACTTTGGTCAAACAAATCGAACCCCTGAATTTCTCCGAAAATTTCCCGCTGGCAAAgtgagtcgtgtagcttgtctagtggtcatgatatcatgaaaatttagatc Alignment from Exonerate_protein2genome ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG atgttcctcacacagacactgtacacatatgcttcttttttgttttgtagTCACTGTACACCTACTCTGAGAATTGGAAGGCATTCAAAGCACTAATCGCTGCTCAGTACAGTGGTGCTCAGGTCCGAGTGCTCTCTGCCCCTCCCTATTTCCACTTTGGTCAAACAAATCGAACCCCTGAATTTCTCCGAAAATTTCCCGCTGGCAAAgtgagtcgtgtagcttgtctagtggtcatgatatcatgaaaatttagatc Alignment from Exonerate_coding2genome ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG atgttcctcacacagacactgtacacatatgcttcttttttgttttgtagTCACTGTACACCTACTCTGAGAATTGGAAGGCATTCAAAGCACTAATCGCTGCTCAGTACAGTGGTGCTCAGGTCCGAGTGCTCTCTGCCCCTCCCTATTTCCACTTTGGTCAAACAAATCGAACCCCTGAATTTCTCCGAAAATTTCCCGCTGGCAAAgtgagtcgtgtagcttgtctagtggtcatgatatcatgaaaatttagatc Alignment from GeneWise GCGGCTGGGACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG atgttcctcacacagacactgtacacatatgcttcttttttgttttgtag---------TCACTGTACACCTACTCTGAGAATTGGAAGGCATTCAAAGCACTAATCGCTGCTCAGTACAGTGGTGCTCAGGTCCGAGTGCTCTCTGCCCCTCCCTATTTCCACTTTGGTCAAACAAATCGAACCCCTGAATTTCTCCGAAAATTTCCCGCTGGCAAAgtgagtcgtgtagcttgtctagtggtcatgatatcatgaaaatttagatc #### Eef1g_ID2561_3 --> 0 - 1 Original Alignment GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATg gactgtaactgtgcttccatctacttaccttttgtctttgttcccgttagGTCCCCACATTTGAAGGTGATGATGGGTTCTGTGCATTTGAGGGTAATGCAATCGCCTATTATggtaaaatttaggatagaagatatggggatgtgaagagctatataagggca Alignment from CESAR GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATg gactgtaactgtgcttccatctacttaccttttgtctttgttcccgttagGTCCCCACATTTGAAGGTGATGATGGGTTCTGTGCATTTGAGGGTAATGCAATCGCCTATTATggtaaaatttaggatagaagatatggggatgtgaagagctatataagggca Alignment from Spaln_aa2Genome GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG gactgtaactgtgcttccatctacttaccttttgtctttgttcccgttagGTCCCCACATTTGAAGGTGATGATGGGTTCTGTGCATTTGAGGGTAATGCAATCGCCTATTATGgtaaaatttaggatagaagatatggggatgtgaagagctatataagggca Alignment from Spaln_nt2Genome GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG gactgtaactgtgcttccatctacttaccttttgtctttgttcccgttagGTCCCCACATTTGAAGGTGATGATGGGTTCTGTGCATTTGAGGGTAATGCAATCGCCTATTATGgtaaaatttaggatagaagatatggggatgtgaagagctatataagggca Alignment from Pairagon GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG gactgtaactgtgcttccatctacttaccttttgtctttgttcccgttagGTCCCCACATTTGAAGGTGATGATGGGTTCTGTGCATTTGAGGGTAATGCAATCGCCTATTATGgtaaaatttaggatagaagatatggggatgtgaagagctatataagggca Alignment from Exonerate_protein2genome GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG gactgtaactgtgcttccatctacttaccttttgtctttgttcccgttagGTCCCCACATTTGAAGGTGATGATGGGTTCTGTGCATTTGAGGGTAATGCAATCGCCTATTATGgtaaaatttaggatagaagatatggggatgtgaagagctatataagggca Alignment from Exonerate_coding2genome GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG gactgtaactgtgcttccatctacttaccttttgtctttgttcccgttagGTCCCCACATTTGAAGGTGATGATGGGTTCTGTGCATTTGAGGGTAATGCAATCGCCTATTATGgtaaaatttaggatagaagatatggggatgtgaagagctatataagggca Alignment from GeneWise GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG gactgtaactgtgcttccatctacttaccttttgtctttgttcccgttagGTCCCCACATTTGAAGGTGATGATGGGTTCTGTGCATTTGAGGGTAATGCAATCGCCTATTATGgtaaaatttaggatagaagatatggggatgtgaagagctatataagggca #### Ehbp1l1_ID1218_17 --> 1 - 1 Original Alignment cATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAg cccttcccaaaggccctttccaagaagcgtatcttcttcacattttacagcATCAAGGAGCAAGACTTGGAGCAGAGGTTTGAACTGCTAAGCCGTGAACTGCGGTCCATGTTGGCCATTGAAggtaagcctgtctgatggatactacacgcctaaaggacttacaaatctggg Alignment from CESAR cATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAg cccttcccaaaggccctttccaagaagcgtatcttcttcacattttacagcATCAAGGAGCAAGACTTGGAGCAGAGGTTTGAACTGCTAAGCCGTGAACTGCGGTCCATGTTGGCCATTGAAggtaagcctgtctgatggatactacacgcctaaaggacttacaaatctggg Alignment from Spaln_aa2Genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG cccttcccaaaggccctttccaagaagcgtatcttcttcacattttacagCATCAAGGAGCAAGACTTGGAGCAGAGGTTTGAACTGCTAAGCCGTGAACTGCGGTCCATGTTGGCCATTGAAGgtaagcctgtctgatggatactacacgcctaaaggacttacaaatctggg Alignment from Spaln_nt2Genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG cccttcccaaaggccctttccaagaagcgtatcttcttcacattttacagCATCAAGGAGCAAGACTTGGAGCAGAGGTTTGAACTGCTAAGCCGTGAACTGCGGTCCATGTTGGCCATTGAAGgtaagcctgtctgatggatactacacgcctaaaggacttacaaatctggg Alignment from Pairagon CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG cccttcccaaaggccctttccaagaagcgtatcttcttcacattttacagCATCAAGGAGCAAGACTTGGAGCAGAGGTTTGAACTGCTAAGCCGTGAACTGCGGTCCATGTTGGCCATTGAAGgtaagcctgtctgatggatactacacgcctaaaggacttacaaatctggg Alignment from Exonerate_protein2genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG cccttcccaaaggccctttccaagaagcgtatcttcttcacattttacagCATCAAGGAGCAAGACTTGGAGCAGAGGTTTGAACTGCTAAGCCGTGAACTGCGGTCCATGTTGGCCATTGAAGgtaagcctgtctgatggatactacacgcctaaaggacttacaaatctggg Alignment from Exonerate_coding2genome cccttcccaaaggccctttccaagaagcgtatcttcttcacattttacagcatcaaggagcaagacttggagcagaggtttgaactgctaagccgtgaactgcggtccatgttggccattgaaggtaagcctgtctgatggatactacacgcctaaaggacttacaaatctggg Alignment from GeneWise CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG cccttcccaaaggccctttccaagaagcgtatcttcttcacattttacagCATCAAGGAGCAAGACTTGGAGCAGAGGTTTGAACTGCTAAGCCGTGAACTGCGGTCCATGTTGGCCATTGAAGgtaagcctgtctgatggatactacacgcctaaaggacttacaaatctggg #### Ehbp1l1_ID1219_16 --> 2 - 2 Original Alignment gtGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGct gctgctcaaggcatctcgtgtgaggtgtgacgttgtcttctcattcacaggtGTCAATAGGCTACAGGAAGAAGTACTAATTCAGGAGTGGTTTACGTTGGCA---AAAGAAAATGCACTTGTGCAGAGGCAAGACCAGTTGCAATCActgtagggagctgtaatctgtaacctccctggtccatacggagacctggtgc Alignment from CESAR gtGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGct gctgctcaaggcatctcgtgtgaggtgtgacgttgtcttctcattcacaggtGTCAATAGGCTACAGGAAGAAGTACTAATTCAGGAGTGGTTTACGTTGGCA---AAAGAAAATGCACTTGTGCAGAGGCAAGACCAGTTGCAATCActgtagggagctgtaatctgtaacctccctggtccatacggagacctggtgc Alignment from Spaln_aa2Genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgctcaaggcatctcgtgtgaggtgtgacgttgtcttctcattcacagGTGTCAATAGGCTACAGGAAGAAGTACTAATTCAGGAGTGGTTTACGTTGGCA---AAAGAAAATGCACTTGTGCAGAGGCAAGACCAGTTGCAATCACTgtagggagctgtaatctgtaacctccctggtccatacggagacctggtgc Alignment from Spaln_nt2Genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgctcaaggcatctcgtgtgaggtgtgacgttgtcttctcattcacagGTGTCAATAGGCTACAGGAAGAAGTACTAATTCAGGAGTGGTTTACGTTGG-CAA-AAGAA-AATGCACTTGTGCAGAGGCAAGACCAGTTGCAATCACTgtagggagctgtaatctgtaacctccctggtccatacggagacctggtgc Alignment from Pairagon GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgctcaaggcatctcgtgtgaggtgtgacgttgtcttctcattcacagGTGTCAATAGGCTACAGGAAGAAGTACTAATTCAGGAGTGGTTTACGTTGGC--AAAAGAA-AATGCACTTGTGCAGAGGCAAGACCAGTTGCAATCACTgtagggagctgtaatctgtaacctccctggtccatacggagacctggtgc Alignment from Exonerate_protein2genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgctcaaggcatctcgtgtgaggtgtgacgttgtcttctcattcacagGTGTCAATAGGCTACAGGAAGAAGTACTAATTCAGGAGTGGTTTACGTTGGCA---AAAGAAAATGCACTTGTGCAGAGGCAAGACCAGTTGCAATCACTgtagggagctgtaatctgtaacctccctggtccatacggagacctggtgc Alignment from Exonerate_coding2genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgctcaaggcatctcgtgtgaggtgtgacgttgtcttctcattcacagGTGTCAATAGGCTACAGGAAGAAGTACTAATTCAGGAGTGGTTTACGTTGGCA---AAAGAAAATGCACTTGTGCAGAGGCAAGACCAGTTGCAATCACTgtagggagctgtaatctgtaacctccctggtccatacggagacctggtgc Alignment from GeneWise GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgctcaaggcatctcgtgtgaggtgtgacgttgtcttctcattcacagGTGTCAATAGGCTACAGGAAGAAGTACTAATTCAGGAGTGGTTTACGTTGGCA---AAAGAAAATGCACTTGTGCAGAGGCAAGACCAGTTGCAATCACTgtagggagctgtaatctgtaacctccctggtccatacggagacctggtgc #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat gtgtgggaaggatacagtgggggaggctcccattctctcttgtcttccagACACCACCTAGCTTAGTCAGCTCGAGCCAGTCCCTGCTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACAACATCCTGGCGCAATGGCTTAGCCTTCTGTGCCATTTTGCATCAATTCTACCCAGACAAGatgtaagtcggcagtgaatgagcatttgaaattctcaggatgtcataggatg Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat gtgtgggaaggatacagtgggggaggctcccattctctcttgtcttccagACACCACCTAGCTTAGTCAGCTCGAGCCAGTCCCTGCTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACAACATCCTGGCGCAATGGCTTAGCCTTCTGTGCCATTTTGCATCAATTCTACCCAGACAAGatgtaagtcggcagtgaatgagcatttgaaattctcaggatgtcataggatg Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT gtgtgggaaggatacagtgggggaggctcccattctctcttgtcttccagACACCACCTAGCTTAGTCAGCTCGAGCCAGTCCCTGCTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACAACATCCTGGCGCAATGGCTTAGCCTTCTGTGCCATTTTGCATCAATTCTACCCAGACAAGATgtaagtcggcagtgaatgagcatttgaaattctcaggatgtcataggatg Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT gtgtgggaaggatacagtgggggaggctcccattctctcttgtcttccagACACCACCTAGCTTAGTCAGCTCGAGCCAGTCCCTGCTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACAACATCCTGGCGCAATGGCTTAGCCTTCTGTGCCATTTTGCATCAATTCTACCCAGACAAGATgtaagtcggcagtgaatgagcatttgaaattctcaggatgtcataggatg Alignment from Pairagon GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT gtgtgggaaggatacagtgggggaggctcccattctctcttgtcttccagACACCACCTAGCTTAGTCAGCTCGAGCCAGTCCCTGCTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACAACATCCTGGCGCAATGGCTTAGCCTTCTGTGCCATTTTGCATCAATTCTACCCAGACAAGATgtaagtcggcagtgaatgagcatttgaaattctcaggatgtcataggatg Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT gtgtgggaaggatacagtgggggaggctcccattctctcttgtcttccagACACCACCTAGCTTAGTCAGCTCGAGCCAGTCCCTGCTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACAACATCCTGGCGCAATGGCTTAGCCTTCTGTGCCATTTTGCATCAATTCTACCCAGACAAGATgtaagtcggcagtgaatgagcatttgaaattctcaggatgtcataggatg Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT gtgtgggaaggatacagtgggggaggctcccattctctcttgtcttccagACACCACCTAGCTTAGTCAGCTCGAGCCAGTCCCTGCTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACAACATCCTGGCGCAATGGCTTAGCCTTCTGTGCCATTTTGCATCAATTCTACCCAGACAAGATgtaagtcggcagtgaatgagcatttgaaattctcaggatgtcataggatg Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT gtgtgggaaggatacagtgggggaggctcccattctctcttgtcttccagACACCACCTAGCTTAGTCAGCTCGAGCCAGTCCCTGCTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACAACATCCTGGCGCAATGGCTTAGCCTTCTGTGCCATTTTGCATCAATTCTACCCAGACAAGATgtaagtcggcagtgaatgagcatttgaaattctcaggatgtcataggatg #### Ehbp1l1_ID1227_8 --> 2 - 2 Original Alignment ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag agatggcaatccaaacctctaaaagctagtgaactttggtttccaggtagctGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCAAGTTAGAGCAATCCGGGGCCAAGGG---GATCCAACCGCCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGGAACTCCACCTGAGCCAaagtgagcatcatcacagcttctcaggcagggttgcaccattgcagtgttgg Alignment from CESAR ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag agatggcaatccaaacctctaaaagctagtgaactttggtttccaggtagctGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCAAGTTAGAGCAATCCGGGGCCAAGGG---GATCCAACCGCCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGGAACTCCACCTGAGCCAaagtgagcatcatcacagcttctcaggcagggttgcaccattgcagtgttgg Alignment from Spaln_aa2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG agatggcaatccaaacctctaaaagctagtgaactttggtttccaggtagCTGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCAAGTTAGAGCAATCCGGGGCCAAGGG---GATCCAACCGCCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGGAACTCCACCTGAGCCAAAgtgagcatcatcacagcttctcaggcagggttgcaccattgcagtgttgg Alignment from Spaln_nt2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG agatggcaatccaaacctctaaaagctagtgaactttggtttccaggtagCTGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCAAGTTAGAGCAATCCGGGGCCAAGGG---GATCCAACCGCCATGACTGATGG---AGTGGGGCATGAGACCCTAGAGCCCCCAGGAACTCCACCTGAGCCAAAgtgagcatcatcacagcttctcaggcagggttgcaccattgcagtgttgg Alignment from Pairagon CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAG-----------------------GTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG agatggcaatccaaacctctaaaagctagtgaactttggtttccaggtagCTGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCAAGTTAGAGCAATCCGGGGCCAAGGG-----------------------------GATCCAACCGCCATGACTGATGGAGTGGGGCATGAGACCCTAGAGCCCCCAGGAACTCCACCTGAGCCAAAgtgagcatcatcacagcttctcaggcagggttgcaccattgcagtgttgg Alignment from Exonerate_protein2genome agatggcaatccaaacctctaaaagctagtgaactttggtttccaggtagctgctagaccctctagtgctgaaaagacaagtcctgccccagtaagtgcccctgcaccccaagttagagcaatccggggccaaggggatccaaccgccatgactgatggagtggggcatgagaccctagagcccccaggaactccacctgagccaaagtgagcatcatcacagcttctcaggcagggttgcaccattgcagtgttgg Alignment from Exonerate_coding2genome agatggcaatccaaacctctaaaagctagtgaactttggtttccaggtagctgctagaccctctagtgctgaaaagacaagtcctgccccagtaagtgcccctgcaccccaagttagagcaatccggggccaaggggatccaaccgccatgactgatggagtggggcatgagaccctagagcccccaggaactccacctgagccaaagtgagcatcatcacagcttctcaggcagggttgcaccattgcagtgttgg Alignment from GeneWise CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG agatggcaatccaaacctctaaaagctagtgaactttggtttccaggtagCTGCTAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCAAGTTAGAGCAATCCGGGGCCAAGGG---GATCCAACCGCCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGGAACTCCACCTGAGCCAAAgtgagcatcatcacagcttctcaggcagggttgcaccattgcagtgttgg #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTCATT------CATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCTGTC---CTTCTACAAGAAGGCCGTGCCatgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTC------ATTCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCT---GTCCTTCTACAAGAAGGCCGTGCCatgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTC------ATTCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCT---GTCCTTCTACAAGAAGGCCGTGCCATgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTCA------TTCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCT---GTCCTTCTACAAGAAGGCCGTGCCATgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTCA------TTCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCT---GTCCTTCTACAAGAAGGCCGTGCCATgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from Exonerate_protein2genome tacaacagcccatcttcacatttctcccccctctctccgcccatcttcaggagtcaaaaggacagcggaaagttttagctgcagtgggtgtcattcatcatgcaggtcccctacctggccagatctcacttcaattgcggcagaagcccaagtccatcaaagttgtacacgctgagcttaccctcacactcgctgtccttctacaagaaggccgtgccatgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from Exonerate_coding2genome tacaacagcccatcttcacatttctcccccctctctccgcccatcttcaggagtcaaaaggacagcggaaagttttagctgcagtgggtgtcattcatcatgcaggtcccctacctggccagatctcacttcaattgcggcagaagcccaagtccatcaaagttgtacacgctgagcttaccctcacactcgctgtccttctacaagaaggccgtgccatgcaagcgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCC------AC tacaacagcccatcttcacatttctcccccctctctccgcccatcttcagGAGTCAAAAGGACAGCGGAAAGTTTTAGCTGCAGTGGGTGTC------ATTCATCATGCAGGTCCCCTACCTGGCCAGATCTCACTTCAATTGCGGCAGAAGCCCAAGTCCATCAAAGTTGTACACGCTGAGCTTACCCTCACACTCGCT---GTCCTTCTACAAGAAGGCCGTGCCATGCAAGCgtacctttgtgcaggcagttttacagtgaggctgggcagcatgc #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagggGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACACCCTGCAAAAGGAGGGCCAAtggtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagggGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACACCCTGCAAAAGGAGGGCCAAtggtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACACCCTGCAAAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACACCCTGCAAAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACACCCTGCAAAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACACCCTGCAAAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACACCCTGCAAAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatgatgcatcatgctgctctacacaaaaagctcttgtaattgtttatagGGGACTTTCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTCAAGGCAGAGATTTTGTTTGTACTCTGCAAGAACCATGTCCACACCCTGCAAAAGGAGGGCCAATGgtgagccagtctccctgtgcccctgctcagtgaagtagttaggttgtcga #### Eif3a_ID13315_15 --> 0 - 0 Original Alignment ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaagggatgaaaagaatgaaacagacaccactggccccctgtcccagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCCGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgggtatgtctagcattgtgcattatgcgaaagtgataatctacttcta Alignment from CESAR ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaagggatgaaaagaatgaaacagacaccactggccccctgtcccagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCCGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgggtatgtctagcattgtgcattatgcgaaagtgataatctacttcta Alignment from Spaln_aa2Genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaagggatgaaaagaatgaaacagacaccactggccccctgtcccagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCCGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgggtatgtctagcattgtgcattatgcgaaagtgataatctacttcta Alignment from Spaln_nt2Genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaagggatgaaaagaatgaaacagacaccactggccccctgtcccagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCCGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgggtatgtctagcattgtgcattatgcgaaagtgataatctacttcta Alignment from Pairagon ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaagggatgaaaagaatgaaacagacaccactggccccctgtcccagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCCGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgggtatgtctagcattgtgcattatgcgaaagtgataatctacttcta Alignment from Exonerate_protein2genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaagggatgaaaagaatgaaacagacaccactggccccctgtcccagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCCGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgggtatgtctagcattgtgcattatgcgaaagtgataatctacttcta Alignment from Exonerate_coding2genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaagggatgaaaagaatgaaacagacaccactggccccctgtcccagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCCGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgggtatgtctagcattgtgcattatgcgaaagtgataatctacttcta Alignment from GeneWise ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaagggatgaaaagaatgaaacagacaccactggccccctgtcccagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCCGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgggtatgtctagcattgtgcattatgcgaaagtgataatctacttcta #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agtggacttaatagtctgaacattgagttaattttgtctcccaactgcagGTACATATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAGGATGCCACAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGGATTATTAGGCCTGCACACATTCTGgtgagagtctaatgcaggattgatttttaccagaatcctgaaggactcaa Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agtggacttaatagtctgaacattgagttaattttgtctcccaactgcagGTACATATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAGGATGCCACAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGGATTATTAGGCCTGCACACATTCTGgtgagagtctaatgcaggattgatttttaccagaatcctgaaggactcaa Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agtggacttaatagtctgaacattgagttaattttgtctcccaactgcagGTACATATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAGGATGCCACAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGGATTATTAGGCCTGCACACATTCTGgtgagagtctaatgcaggattgatttttaccagaatcctgaaggactcaa Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agtggacttaatagtctgaacattgagttaattttgtctcccaactgcagGTACATATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAGGATGCCACAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGGATTATTAGGCCTGCACACATTCTGgtgagagtctaatgcaggattgatttttaccagaatcctgaaggactcaa Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agtggacttaatagtctgaacattgagttaattttgtctcccaactgcagGTACATATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAGGATGCCACAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGGATTATTAGGCCTGCACACATTCTGgtgagagtctaatgcaggattgatttttaccagaatcctgaaggactcaa Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agtggacttaatagtctgaacattgagttaattttgtctcccaactgcagGTACATATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAGGATGCCACAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGGATTATTAGGCCTGCACACATTCTGgtgagagtctaatgcaggattgatttttaccagaatcctgaaggactcaa Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agtggacttaatagtctgaacattgagttaattttgtctcccaactgcagGTACATATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAGGATGCCACAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGGATTATTAGGCCTGCACACATTCTGgtgagagtctaatgcaggattgatttttaccagaatcctgaaggactcaa Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agtggacttaatagtctgaacattgagttaattttgtctcccaactgcagGTACATATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAGGATGCCACAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGGATTATTAGGCCTGCACACATTCTGgtgagagtctaatgcaggattgatttttaccagaatcctgaaggactcaa #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttagactaggcaggaccccttctattaaacaatctactttcctttcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATTTAGAAGATCTGGATAATATCCAGACTCCTGACaggtatgtcccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttagactaggcaggaccccttctattaaacaatctactttcctttcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATTTAGAAGATCTGGATAATATCCAGACTCCTGACaggtatgtcccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactaggcaggaccccttctattaaacaatctactttcctttcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATTTAGAAGATCTGGATAATATCCAGACTCCTGACAGgtatgtcccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactaggcaggaccccttctattaaacaatctactttcctttcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATTTAGAAGATCTGGATAATATCCAGACTCCTGACAGgtatgtcccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactaggcaggaccccttctattaaacaatctactttcctttcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATTTAGAAGATCTGGATAATATCCAGACTCCTGACAGgtatgtcccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactaggcaggaccccttctattaaacaatctactttcctttcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATTTAGAAGATCTGGATAATATCCAGACTCCTGACAGgtatgtcccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactaggcaggaccccttctattaaacaatctactttcctttcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATTTAGAAGATCTGGATAATATCCAGACTCCTGACAGgtatgtcccaggacactaatctcacatttgcaaatcaataaacatgttac Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttagactaggcaggaccccttctattaaacaatctactttcctttcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAGTCTCAACAAATGGTGTTGGATTTAGAAGATCTGGATAATATCCAGACTCCTGACAGgtatgtcccaggacactaatctcacatttgcaaatcaataaacatgttac #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC gttcgttgagtaagtagaattatcccaatttgatgtgtttgtccctctagcAGCATAACAGTCCCACCGGGGCGGCCACCAATCAGTAGTCCTTCCCTGCTTACAAAAGGCACACAAACTAAAGAAGAGTTGGAGATTGTTCCTTCCTCTGGACCACCTGGTCTAAGCAATGGCCCACCAGCTCTACAAGGGAGCAGCAAAGAACCTACTGGAATCCAATTACAAGGTGGTTGCCGCAGCAGTAGTGGATCAGGCTCACCAGGGCCTCCAGGAATCCTCAGGCCGGTGCAGCCGCTTGAATGTTCAGATacgttgtgccttctctctgtacaacagaCCCCGAAGAAATTCTTTGTCCTCA Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC gtaagatgagtaagtagaattatcccaatttgatgtgtttgtccctctagcAGCATAACAGTCCCACCGGGGCGGCCACCAATCAGTAGTCCTTCCCTGCTTACAAAAGGCACACAAACTAAAGAAGAGTTGGAGATTGTTCCTTCCTCTGGACCACCTGGTCTAAGCAATGGCCCACCAGCTCTACAAGGGAGCAGCAAAGAACCTACTGGAATCCAATTACAAGGTGGTTGCCGCAGCAGTAGTGGATCAGGCTCACCAGGGCCTCCAGGAATCCTCAGGCCGGTGCAGCCGCTTGAATGTTCAGATacgtgaatgtccttttcctttgtatagaCCCCGAAGAAATTCTTTGTCCTCA Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACACG-------------------------CCCCGAAGAAATTCTTCCTCCTCC gttcgttgagtaagtagaattatcccaatttgatgtgtttgtccctctagCAGCATAACAGTCCCACCGGGGCGGCCACCAATCAGTAGTCCTTCCCTGCTTACAAAAGGCACACAAACTAAAGAAGAGTTGGAGATTGTTCCTTCCTCTGGACCACCTGGTCTAAGCAATGGCCCACCAGCTCTACAAGGGAGCAGCAAAGAACCTACTGGAATCCAATTACAAGGTGGTTGCCGCAGCAGTAGTGGATCAGGCTCACCAGGGCCTCCAGGAATCCTCAGGCCGGTGCAGCCGCTTGAATGTTCAGATACGTTGTGCCTTCTCTCTGTACAACAGaCCCCGAAGAAATTCTTTGTCCTCA Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACACG-------------------------CCCCGAAGAAATTCTTCCTCCTCC gttcgttgagtaagtagaattatcccaatttgatgtgtttgtccctctagCAGCATAACAGTCCCACCGGGGCGGCCACCAATCAGTAGTCCTTCCCTGCTTACAAAAGGCACACAAACTAAAGAAGAGTTGGAGATTGTTCCTTCCTCTGGACCACCTGGTCTAAGCAATGGCCCACCAGCTCTACAAGGGAGCAGCAAAGAACCTACTGGAATCCAATTACAAGGTGGTTGCCGCAGCAGTAGTGGATCAGGCTCACCAGGGCCTCCAGGAATCCTCAGGCCGGTGCAGCCGCTTGAATGTTCAGATACGTTGTGCCTTCTCTCTGTACAACAGACCCCGAAGAAATTCTTTGTCCTCA Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACACG-------------------------CCCCGAAGAAATTCTTCCTCCTCC gttcgttgagtaagtagaattatcccaatttgatgtgtttgtccctctagCAGCATAACAGTCCCACCGGGGCGGCCACCAATCAGTAGTCCTTCCCTGCTTACAAAAGGCACACAAACTAAAGAAGAGTTGGAGATTGTTCCTTCCTCTGGACCACCTGGTCTAAGCAATGGCCCACCAGCTCTACAAGGGAGCAGCAAAGAACCTACTGGAATCCAATTACAAGGTGGTTGCCGCAGCAGTAGTGGATCAGGCTCACCAGGGCCTCCAGGAATCCTCAGGCCGGTGCAGCCGCTTGAATGTTCAGATACGTTGTGCCTTCTCTCTGTACAACAGACCCCGAAGAAATTCTTTGTCCTCA Alignment from Exonerate_protein2genome GACACGCCCCGAAGAAATTCTTCCTCCTCC gttcgttgagtaagtagaattatcccaatttgatgtgtttgtccctctagcagcataacagtcccaccggggcggccaccaatcagtagtccttccctgcttacaaaaggcacacaaactaaagaagagttggagattgttccttcctctggaccacctggtctaagcaatggcccaccagctctacaagggagcagcaaagaacctactggaatccaattacaaggtggttgccgcagcagtagtggatcaggctcaccagggcctccaggaatcctcaggccggtgcagccgcttgaatgttcagatacgttgtgccttctctctgtacAACAGACCCCGAAGAAATTCTTTGTCCTCA Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACACG---------------------------CCCCGAAGAAATTCTTCCTCCT gttcgttgagtaagtagaattatcccaatttgatgtgtttgtccctctagCAGCATAACAGTCCCACCGGGGCGGCCACCAATCAGTAGTCCTTCCCTGCTTACAAAAGGCACACAAACTAAAGAAGAGTTGGAGATTGTTCCTTCCTCTGGACCACCTGGTCTAAGCAATGGCCCACCAGCTCTACAAGGGAGCAGCAAAGAACCTACTGGAATCCAATTACAAGGTGGTTGCCGCAGCAGTAGTGGATCAGGCTCACCAGGGCCTCCAGGAATCCTCAGGCCGGTGCAGCCGCTTGAATGTTCAGATACGTTGTGCCTTCTCTCTGTACAACAGA--CCCCGAAGAAATTCTTTGTCCT #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagtTATGGATATAGAGGTCAGGATTCTTGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGAtggtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagtTATGGATATAGAGGTCAGGATTCTTGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGAtggtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagTTATGGATATAGAGGTCAGGATTCTTGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGATGgtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagTTATGGATATAGAGGTCAGGATTCTTGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGATGgtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagTTATGGATATAGAGGTCAGGATTCTTGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGATGgtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagTTATGGATATAGAGGTCAGGATTCTTGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGATGgtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise -TATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaacccccccccatagcctcatgtgtgcttatgattgcagTTATGGATATAGAGGTCAGGATTCTTGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTCGTACTGTACCGGCCAGGAGGAGGTCCAGGCGGGCCAGGAGGTGGTAGCCAGAGACATTATCGGGGCCACACAGACTGTATTCGATGgtaaggaccgtcatagtggtaaacacttgattcatgttgacttcaaggaa #### Eml3_ID2511_10 --> 0 - 0 Original Alignment GATCAAGGTGCTTTTCTGTGTGTGGTGGATGATTCCAATGAGCACATGCTGTCAGTGTGGGACTGTAGCCGGGGAGTGAAGCTGGCTGAGATTAAG agtattgtgatcagagaattgcaatatgtgtgttttaatcgtctctctagGGTAAGGGCGCTTTTCTCTGTGTAATAGAT---TCCAATGAACACATGCTGTCTGTATGGGACTGTAGCCGAGGTGTGAAGCTTACTGAGATTATGgtaaggttgcaatgcctgggccttgtacatatgctggaaatatgagaagg Alignment from CESAR GATCAAGGTGCTTTTCTGTGTGTGGTGGATGATTCCAATGAGCACATGCTGTCAGTGTGGGACTGTAGCCGGGGAGTGAAGCTGGCTGAGATTAAG agtattgtgatcagagaattgcaatatgtgtgttttaatcgtctctctagGGTAAGGGCGCTTTTCTCTGTGTAATA---GATTCCAATGAACACATGCTGTCTGTATGGGACTGTAGCCGAGGTGTGAAGCTTACTGAGATTATGgtaaggttgcaatgcctgggccttgtacatatgctggaaatatgagaagg Alignment from Spaln_aa2Genome GATCAAGGTGCTTTTCTGTGTGTGGTGGATGATTCCAATGAGCACATGCTGTCAGTGTGGGACTGTAGCCGGGGAGTGAAGCTGGCTGAGATTAAG agtattgtgatcagagaattgcaatatgtgtgttttaatcgtctctctagGGTAAGGGCGCTTTTCTCTGTGTAATA---GATTCCAATGAACACATGCTGTCTGTATGGGACTGTAGCCGAGGTGTGAAGCTTACTGAGATTATGgtaaggttgcaatgcctgggccttgtacatatgctggaaatatgagaagg Alignment from Spaln_nt2Genome GATCAAGGTGCTTTTCTGTGTGTGGTGGATGATTCCAATGAGCACATGCTGTCAGTGTGGGACTGTAGCCGGGGAGTGAAGCTGGCTGAGATTAAG agtattgtgatcagagaattgcaatatgtgtgttttaatcgtctctctagGGTAAGGGCGCTTTTCTCTGTGTAAT---AGATTCCAATGAACACATGCTGTCTGTATGGGACTGTAGCCGAGGTGTGAAGCTTACTGAGATTATGgtaaggttgcaatgcctgggccttgtacatatgctggaaatatgagaagg Alignment from Pairagon GATCAAGGTGCTTTTCTGTGTGTGGTGGATGATTCCAATGAGCACATGCTGTCAGTGTGGGACTGTAGCCGGGGAGTGAAGCTGGCTGAGATTAAG agtattgtgatcagagaattgcaatatgtgtgttttaatcgtctctctagGGTAAGGGCGCTTTTCTCTGTGTAATA---GATTCCAATGAACACATGCTGTCTGTATGGGACTGTAGCCGAGGTGTGAAGCTTACTGAGATTATGgtaaggttgcaatgcctgggccttgtacatatgctggaaatatgagaagg Alignment from Exonerate_protein2genome GATCAAGGTGCTTTTCTGTGTGTGGTGGATGATTCCAATGAGCACATGCTGTCAGTGTGGGACTGTAGCCGGGGAGTGAAGCTGGCTGAGATTAAG agtattgtgatcagagaattgcaatatgtgtgttttaatcgtctctctagGGTAAGGGCGCTTTTCTCTGTGTAATA---GATTCCAATGAACACATGCTGTCTGTATGGGACTGTAGCCGAGGTGTGAAGCTTACTGAGATTATGgtaaggttgcaatgcctgggccttgtacatatgctggaaatatgagaagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATCAAGGTGCTTTTCTGTGTGTGGTGGATGATTCCAATGAGCACATGCTGTCAGTGTGGGACTGTAGCCGGGGAGTGAAGCTGGCTGAGATTAAG agtattgtgatcagagaattgcaatatgtgtgttttaatcgtctctctagGGTAAGGGCGCTTTTCTCTGTGTAATA---GATTCCAATGAACACATGCTGTCTGTATGGGACTGTAGCCGAGGTGTGAAGCTTACTGAGATTATGgtaaggttgcaatgcctgggccttgtacatatgctggaaatatgagaagg #### Eno4_ID12833_5 --> 2 - 0 Original Alignment gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatctttctctcgctctgcggcaggaCGGAGGGACATGCTTCTGGAGAGACCTGTGTCACCCCAAGAACCACCTGAACCAGTTCAACATGGAAGTATGGCTCTAGGTGCTGTGTTGCTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTTTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtatcatgatattgtgggcatgagtgtgcatatgtagagatagagctctc Alignment from CESAR gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatctttctctcgctctgcggcaggaCGGAGGGACATGCTTCTGGAGAGACCTGTGTCACCCCAAGAACCACCTGAACCAGTTCAACATGGAAGTATGGCTCTAGGTGCTGTGTTGCTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTTTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtatcatgatattgtgggcatgagtgtgcatatgtagagatagagctctc Alignment from Spaln_aa2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatctttctctcgctctgcggcagGACGGAGGGACATGCTTCTGGAGAGACCTGTGTCACCCCAAGAACCACCTGAACCAGTTCAACATGGAAGTATGGCTCTAGGTGCTGTGTTGCTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTTTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtatcatgatattgtgggcatgagtgtgcatatgtagagatagagctctc Alignment from Spaln_nt2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatctttctctcgctctgcggcagGACGGAGGGACATGCTTCTGGAGAGACCTGTGTCACCCCAAGAACCACCTGAACCAGTTCAACATGGAAGTATGGCTCTAGGTGCTGTGTTGCTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTTTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtatcatgatattgtgggcatgagtgtgcatatgtagagatagagctctc Alignment from Pairagon GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGAT----------------------------------------------------- tttccagttttctacttccaaaaagacatctttctctcgctctgcggcagGACGGAGGGACATGCTTCTGGAGAGACCTGTGTCACCCCAAGAACCACCTGAACCAGTTCAACATGGAAGTATGGCTCTAGGTGCTGTGTTGCTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTTTACTCAGCCCTGGCATCACTGAAGCAAGATCAAGTATCATGATATTGTGGGCATGAGTGTGCATATGTAGAGATAGAGCTCTC Alignment from Exonerate_protein2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatctttctctcgctctgcggcagGACGGAGGGACATGCTTCTGGAGAGACCTGTGTCACCCCAAGAACCACCTGAACCAGTTCAACATGGAAGTATGGCTCTAGGTGCTGTGTTGCTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTTTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtatcatgatattgtgggcatgagtgtgcatatgtagagatagagctctc Alignment from Exonerate_coding2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatctttctctcgctctgcggcagGACGGAGGGACATGCTTCTGGAGAGACCTGTGTCACCCCAAGAACCACCTGAACCAGTTCAACATGGAAGTATGGCTCTAGGTGCTGTGTTGCTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTTTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtatcatgatattgtgggcatgagtgtgcatatgtagagatagagctctc Alignment from GeneWise GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttccagttttctacttccaaaaagacatctttctctcgctctgcggcagGACGGAGGGACATGCTTCTGGAGAGACCTGTGTCACCCCAAGAACCACCTGAACCAGTTCAACATGGAAGTATGGCTCTAGGTGCTGTGTTGCTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCCATGACCCTCTTTACTCAGCCCTGGCATCACTGAAGCAAGATCAAgtatcatgatattgtgggcatgagtgtgcatatgtagagatagagctctc #### Eno4_ID12835_7 --> 0 - 0 Original Alignment AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaattcccaggtgtgagttggaagagtggactgctgtttttctgtcccagAGTGTTGAGTTGCTT---CAAATTCAAAAGCAAGTGAATAGAGCGAAGAAGACAgttggtaaggaaacatgtgtaattagatgtttgtgcattggttttggcac Alignment from CESAR AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaattcccaggtgtgagttggaagagtggactgctgtttttctgtcccagAGTGTTGAGTTGCTT---CAAATTCAAAAGCAAGTGAATAGAGCGAAGAAGACAgttggtaaggaaacatgtgtaattagatgtttgtgcattggttttggcac Alignment from Spaln_aa2Genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaattcccaggtgtgagttggaagagtggactgctgtttttctgtcccagAGTGTTGAG---TTGCTTCAAATTCAAAAGCAAGTGAATAGAGCGAAGAAGACAgttggtaaggaaacatgtgtaattagatgtttgtgcattggttttggcac Alignment from Spaln_nt2Genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaattcccaggtgtgagttggaagagtggactgctgtttttctgtcccagAGTGTTGAGTTGCTTC---AAATTCAAAAGCAAGTGAATAGAGCGAAGAAGACAgttggtaaggaaacatgtgtaattagatgtttgtgcattggttttggcac Alignment from Pairagon AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaattcccaggtgtgagttggaagagtggactgctgtttttctgtcccagAGTGTTGAGTTGCTTC---AAATTCAAAAGCAAGTGAATAGAGCGAAGAAGACAgttggtaaggaaacatgtgtaattagatgtttgtgcattggttttggcac Alignment from Exonerate_protein2genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaattcccaggtgtgagttggaagagtggactgctgtttttctgtcccagAGTGTTGAG---TTGCTTCAAATTCAAAAGCAAGTGAATAGAGCGAAGAAGACAgttggtaaggaaacatgtgtaattagatgtttgtgcattggttttggcac Alignment from Exonerate_coding2genome aaattcccaggtgtgagttggaagagtggactgctgtttttctgtcccagagtgttgagttgcttcaaattcaaaagcaagtgaatagagcgaagaagacagttggtaaggaaacatgtgtaattagatgtttgtgcattggttttggcac Alignment from GeneWise AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaattcccaggtgtgagttggaagagtggactgctgtttttctgtcccagAGTGTTGAGTTGCTT---CAAATTCAAAAGCAAGTGAATAGAGCGAAGAAGACAgttggtaaggaaacatgtgtaattagatgtttgtgcattggttttggcac #### Eno4_ID12842_13 --> 0 - 1 Original Alignment GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGg aatagattccacctaaagttaatttgtttattcttcttttttccttttagGCAGTAGGCTTAGGCGCTTGGTTCATCAAACTGGAGGGTCTTTCTCATGGCGAACACTTCACCACATACAACCGTCTCCTTGCT---AAGGAAGAACTCATTCAAAGAGGAGTGTGGggtaaccctaatagcttgttctgttgaacatataggtcagttaacaaagat Alignment from CESAR GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGg aatagattccacctaaagttaatttgtttattcttcttttttccttttagGCAGTAGGCTTAGGCGCTTGGTTCATCAAACTGGAGGGTCTTTCTCATGGCGAACACTTCACCACATACAACCGTCTCCTTGCT---AAGGAAGAACTCATTCAAAGAGGAGTGTGGggtaaccctaatagcttgttctgttgaacatataggtcagttaacaaagat Alignment from Spaln_aa2Genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG aatagattccacctaaagttaatttgtttattcttcttttttccttttagGCAGTAGGCTTAGGCGCTTGGTTCATCAAACTGGAGGGTCTTTCTCATGGCGAACACTTCACCACATACAACCGTCTCCTTGCT---AAGGAAGAACTCATTCAAAGAGGAGTGTGGGgtaaccctaatagcttgttctgttgaacatataggtcagttaacaaagat Alignment from Spaln_nt2Genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG aatagattccacctaaagttaatttgtttattcttcttttttccttttagGCAGTAGGCTTAGGCGCTTGGTTCATCAAACTGGAGGGTCTTTCTCATGGCGAACACTTCACCACATACAACCGTCTCCTTGCTAAGGAA---GAACTCATTCAAAGAGGAGTGTGGGgtaaccctaatagcttgttctgttgaacatataggtcagttaacaaagat Alignment from Pairagon GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG aatagattccacctaaagttaatttgtttattcttcttttttccttttagGCAGTAGGCTTAGGCGCTTGGTTCATCAAACTGGAGGGTCTTTCTCATGGCGAACACTTCACCACATACAACCGTCTCCTTGCTA---AGGAAGAACTCATTCAAAGAGGAGTGTGGGgtaaccctaatagcttgttctgttgaacatataggtcagttaacaaagat Alignment from Exonerate_protein2genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG aatagattccacctaaagttaatttgtttattcttcttttttccttttagGCAGTAGGCTTAGGCGCTTGGTTCATCAAACTGGAGGGTCTTTCTCATGGCGAACACTTCACCACATACAACCGTCTCCTTGCT---AAGGAAGAACTCATTCAAAGAGGAGTGTGGGgtaaccctaatagcttgttctgttgaacatataggtcagttaacaaagat Alignment from Exonerate_coding2genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG aatagattccacctaaagttaatttgtttattcttcttttttccttttagGCAGTAGGCTTAGGCGCTTGGTTCATCAAACTGGAGGGTCTTTCTCATGGCGAACACTTCACCACATACAACCGTCTCCTTGCT---AAGGAAGAACTCATTCAAAGAGGAGTGTGGGgtaaccctaatagcttgttctgttgaacatataggtcagttaacaaagat Alignment from GeneWise GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG aatagattccacctaaagttaatttgtttattcttcttttttccttttagGCAGTAGGCTTAGGCGCTTGGTTCATCAAACTGGAGGGTCTTTCTCATGGCGAACACTTCACCACATACAACCGTCTCCTTGCT---AAGGAAGAACTCATTCAAAGAGGAGTGTGGGgtaaccctaatagcttgttctgttgaacatataggtcagttaacaaagat #### Entpd1_ID8007_2 --> 2 - 0 Original Alignment atTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG tagcctcaggtactgtttccttgggtgtctgacctcacttatccccgcagatTCTAAAATTCAAAAATTCTGTTCCAAGAATATTTTAATCATCCTTGGTTTTACTGCAATTTTGGCCGTCATAGCTTTAATAGCAGTGGGCCTGACCCAAAATAAACCTTTGCCAGAAAATGTTAAGgtgagtattgtggacagtaccttgcattattgagagagtaaaggcctaac Alignment from CESAR atTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG tagcctcaggtactgtttccttgggtgtctgacctcacttatccccgcagatTCTAAAATTCAAAAATTCTGTTCCAAGAATATTTTAATCATCCTTGGTTTTACTGCAATTTTGGCCGTCATAGCTTTAATAGCAGTGGGCCTGACCCAAAATAAACCTTTGCCAGAAAATGTTAAGgtgagtattgtggacagtaccttgcattattgagagagtaaaggcctaac Alignment from Spaln_aa2Genome ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG tagcctcaggtactgtttccttgggtgtctgacctcacttatccccgcagATTCTAAAATTCAAAAATTCTGTTCCAAGAATATTTTAATCATCCTTGGTTTTACTGCAATTTTGGCCGTCATAGCTTTAATAGCAGTGGGCCTGACCCAAAATAAACCTTTGCCAGAAAATGTTAAGgtgagtattgtggacagtaccttgcattattgagagagtaaaggcctaac Alignment from Spaln_nt2Genome ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG tagcctcaggtactgtttccttgggtgtctgacctcacttatccccgcagATTCTAAAATTCAAAAATTCTGTTCCAAGAATATTTTAATCATCCTTGGTTTTACTGCAATTTTGGCCGTCATAGCTTTAATAGCAGTGGGCCTGACCCAAAATAAACCTTTGCCAGAAAATGTTAAGgtgagtattgtggacagtaccttgcattattgagagagtaaaggcctaac Alignment from Pairagon ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG tagcctcaggtactgtttccttgggtgtctgacctcacttatccccgcagATTCTAAAATTCAAAAATTCTGTTCCAAGAATATTTTAATCATCCTTGGTTTTACTGCAATTTTGGCCGTCATAGCTTTAATAGCAGTGGGCCTGACCCAAAATAAACCTTTGCCAGAAAATGTTAAGgtgagtattgtggacagtaccttgcattattgagagagtaaaggcctaac Alignment from Exonerate_protein2genome GATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG tagcctcaggtactgtttccttgggtgtctgacctcacttatccccgcaGATTCTAAAATTCAAAAATTCTGTTCCAAGAATATTTTAATCATCCTTGGTTTTACTGCAATTTTGGCCGTCATAGCTTTAATAGCAGTGGGCCTGACCCAAAATAAACCTTTGCCAGAAAATGTTAAGgtgagtattgtggacagtaccttgcattattgagagagtaaaggcctaac Alignment from Exonerate_coding2genome tagcctcaggtactgtttccttgggtgtctgacctcacttatccccgcagattctaaaattcaaaaattctgttccaagaatattttaatcatccttggttttactgcaattttggccgtcatagctttaatagcagtgggcctgacccaaaataaacctttgccagaaaatgttaaggtgagtattgtggacagtaccttgcattattgagagagtaaaggcctaac Alignment from GeneWise GAAGATATAAAGGATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG gtactgtttccttgggtgtctgacctcacttatcccc---------GCAGATTCTAAAATTCAAAAATTCTGTTCCAAGAATATTTTAATCATCCTTGGTTTTACTGCAATTTTGGCCGTCATAGCTTTAATAGCAGTGGGCCTGACCCAAAATAAACCTTTGCCAGAAAATGTTAAGgtgagtattgtggacagtaccttgcattattgagagagtaaaggcctaac #### Entpd1_ID8010_5 --> 1 - 0 Original Alignment aATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCA------GTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG ggatcccctaggcaacccccagtatgttactcactgttgtctccccacagaATGGATAGTGAACAATCAGCTGATGAGGTTCTGGCTTCAGCTACAGTGTTAACAAGTCTCAAAGGCACTCCTTTTCAATTTCAGAGCGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtaagccttctagaaactaataaaactttggtggattgtgaactgtagag Alignment from CESAR aATGGAAAGCGAACAATCGGCAGACGAGGTCCTG------GCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG ggatcccctaggcaacccccagtatgttactcactgttgtctccccacagaATGGATAGTGAACAATCAGCTGATGAGGTTCTGGCTTCAGCTACAGTGTTAACAAGTCTCAAAGGCACTCCTTTTCAATTTCAGAGCGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtaagccttctagaaactaataaaactttggtggattgtgaactgtagag Alignment from Spaln_aa2Genome AATGGAAAGCGAACAATCGGCAGACGAGGTCCTG------GCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG ggatcccctaggcaacccccagtatgttactcactgttgtctccccacagAATGGATAGTGAACAATCAGCTGATGAGGTTCTGGCTTCAGCTACAGTGTTAACAAGTCTCAAAGGCACTCCTTTTCAATTTCAGAGCGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtaagccttctagaaactaataaaactttggtggattgtgaactgtagag Alignment from Spaln_nt2Genome AATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCAG------TGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG ggatcccctaggcaacccccagtatgttactcactgttgtctccccacagAATGGATAGTGAACAATCAGCTGATGAGGTTCTGGCTTCAGCTACAGTGTTAACAAGTCTCAAAGGCACTCCTTTTCAATTTCAGAGCGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtaagccttctagaaactaataaaactttggtggattgtgaactgtagag Alignment from Pairagon AATGGAAAGCGAACAATCGGCAGACGAGGTCCTG------GCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG ggatcccctaggcaacccccagtatgttactcactgttgtctccccacagAATGGATAGTGAACAATCAGCTGATGAGGTTCTGGCTTCAGCTACAGTGTTAACAAGTCTCAAAGGCACTCCTTTTCAATTTCAGAGCGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtaagccttctagaaactaataaaactttggtggattgtgaactgtagag Alignment from Exonerate_protein2genome AATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCA------GTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG ggatcccctaggcaacccccagtatgttactcactgttgtctccccacagAATGGATAGTGAACAATCAGCTGATGAGGTTCTGGCTTCAGCTACAGTGTTAACAAGTCTCAAAGGCACTCCTTTTCAATTTCAGAGCGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtaagccttctagaaactaataaaactttggtggattgtgaactgtagag Alignment from Exonerate_coding2genome ggatcccctaggcaacccccagtatgttactcactgttgtctccccacagaatggatagtgaacaatcagctgatgaggttctggcttcagctacagtgttaacaagtctcaaaggcactccttttcaatttcagagcgccaagattattactggtcacgaggagggtgcttatgggtggataactattaactacttattgggtaggttcacccatgtaagccttctagaaactaataaaactttggtggattgtgaactgtagag Alignment from GeneWise AATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCA------GTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG ggatcccctaggcaacccccagtatgttactcactgttgtctccccacagAATGGATAGTGAACAATCAGCTGATGAGGTTCTGGCTTCAGCTACAGTGTTAACAAGTCTCAAAGGCACTCCTTTTCAATTTCAGAGCGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtaagccttctagaaactaataaaactttggtggattgtgaactgtagag #### Entpd1_ID8011_6 --> 0 - 0 Original Alignment GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG catgattggacaaggatacttatgggtttgagttgcttgcttccgtccagGAGCAGAGTTGGATAAGCCTCATCTCAGACAGCCAAAAACGGAAAACCTCTGGTGCTTTAGACCTTGGTGGATCAACCATACAAATCACTTTTGTGCCGCAGAATAGTGCTATAGAGTCCCCACAAAACACCCTGCAATTCCATCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTTTATGCTATGGGAAGGATCATCCAATTTGGCAGAAACTTGCCAAGGACGTACGGgttgaaggctgcttactagtttgtcttctattggagacaagtgtgaggtt Alignment from CESAR GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG catgattggacaaggatacttatgggtttgagttgcttgcttccgtccagGAGCAGAGTTGGATAAGCCTCATCTCAGACAGCCAAAAACGGAAAACCTCTGGTGCTTTAGACCTTGGTGGATCAACCATACAAATCACTTTTGTGCCGCAGAATAGTGCTATAGAGTCCCCACAAAACACCCTGCAATTCCATCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTTTATGCTATGGGAAGGATCATCCAATTTGGCAGAAACTTGCCAAGGACGTACGGgttgaaggctgcttactagtttgtcttctattggagacaagtgtgaggtt Alignment from Spaln_aa2Genome GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG catgattggacaaggatacttatgggtttgagttgcttgcttccgtccagGAGCAGAGTTGGATAAGCCTCATCTCAGACAGCCAAAAACGGAAAACCTCTGGTGCTTTAGACCTTGGTGGATCAACCATACAAATCACTTTTGTGCCGCAGAATAGTGCTATAGAGTCCCCACAAAACACCCTGCAATTCCATCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTTTATGCTATGGGAAGGATCATCCAATTTGGCAGAAACTTGCCAAGGACGTACGGgttgaaggctgcttactagtttgtcttctattggagacaagtgtgaggtt Alignment from Spaln_nt2Genome GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGAC catgattggacaaggatacttatgggtttgagttgcttgcttccgtccagGAGCAGAGTTGGATAAGCCTCATCTCAGACAGCCAAAAACGGAAAACCTCTGGTGCTTTAGACCTTGGTGGATCAACCATACAAATCACTTTTGTGCCGCAGAATAGTGCTATAGAGTCCCCACAAAACACCCTGCAATTCCATCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTTTATGCTATGGGAAGGATCATCCAATTTGGCAGAAACTTGCCAAGGACgtacgggttgaaggctgcttactagtttgtcttctattggagacaagtgtgaggtt Alignment from Pairagon GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGAC catgattggacaaggatacttatgggtttgagttgcttgcttccgtccagGAGCAGAGTTGGATAAGCCTCATCTCAGACAGCCAAAAACGGAAAACCTCTGGTGCTTTAGACCTTGGTGGATCAACCATACAAATCACTTTTGTGCCGCAGAATAGTGCTATAGAGTCCCCACAAAACACCCTGCAATTCCATCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTTTATGCTATGGGAAGGATCATCCAATTTGGCAGAAACTTGCCAAGGACgtacgggttgaaggctgcttactagtttgtcttctattggagacaagtgtgaggtt Alignment from Exonerate_protein2genome GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG catgattggacaaggatacttatgggtttgagttgcttgcttccgtccagGAGCAGAGTTGGATAAGCCTCATCTCAGACAGCCAAAAACGGAAAACCTCTGGTGCTTTAGACCTTGGTGGATCAACCATACAAATCACTTTTGTGCCGCAGAATAGTGCTATAGAGTCCCCACAAAACACCCTGCAATTCCATCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTTTATGCTATGGGAAGGATCATCCAATTTGGCAGAAACTTGCCAAGGACGTACGGgttgaaggctgcttactagtttgtcttctattggagacaagtgtgaggtt Alignment from Exonerate_coding2genome ACTATTAACTATCTGCTGGGCAGATTCACTCAGGAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG catgattggacaaggatACTTATGGGTTTGAGTTGCTTGCTTCCGTCCAGGAGCAGAGTTGGATAAGCCTCATCTCAGACAGCCAAAAACGGAAAACCTCTGGTGCTTTAGACCTTGGTGGATCAACCATACAAATCACTTTTGTGCCGCAGAATAGTGCTATAGAGTCCCCACAAAACACCCTGCAATTCCATCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTTTATGCTATGGGAAGGATCATCCAATTTGGCAGAAACTTGCCAAGGACGTACGGgttgaaggctgcttactagtttgtcttctattggagacaagtgtgaggtt Alignment from GeneWise GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG catgattggacaaggatacttatgggtttgagttgcttgcttccgtccagGAGCAGAGTTGGATAAGCCTCATCTCAGACAGCCAAAAACGGAAAACCTCTGGTGCTTTAGACCTTGGTGGATCAACCATACAAATCACTTTTGTGCCGCAGAATAGTGCTATAGAGTCCCCACAAAACACCCTGCAATTCCATCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTTTATGCTATGGGAAGGATCATCCAATTTGGCAGAAACTTGCCAAGGACGTACGGgttgaaggctgcttactagtttgtcttctattggagacaagtgtgaggtt #### Entpd7_ID8797_6 --> 2 - 1 Original Alignment gaGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATg aagttagtatagggtcaaatgttgtgggacccctgacctctcacccacaggaGTTTATGCATGGATTGGCATTAACTTTGTCCTGGGAAGATTCGACCATGAAGATggtatgttctcactcattatatcaaaatgcatcaccatgttaaagtctact Alignment from CESAR gaGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATg aagttagtatagggtcaaatgttgtgggacccctgacctctcacccacaggaGTTTATGCATGGATTGGCATTAACTTTGTCCTGGGAAGATTCGACCATGAAGATggtatgttctcactcattatatcaaaatgcatcaccatgttaaagtctact Alignment from Spaln_aa2Genome GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG aagttagtatagggtcaaatgttgtgggacccctgacctctcacccacagGAGTTTATGCATGGATTGGCATTAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtatgttctcactcattatatcaaaatgcatcaccatgttaaagtctact Alignment from Spaln_nt2Genome GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG aagttagtatagggtcaaatgttgtgggacccctgacctctcacccacagGAGTTTATGCATGGATTGGCATTAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtatgttctcactcattatatcaaaatgcatcaccatgttaaagtctact Alignment from Pairagon GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG aagttagtatagggtcaaatgttgtgggacccctgacctctcacccacagGAGTTTATGCATGGATTGGCATTAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtatgttctcactcattatatcaaaatgcatcaccatgttaaagtctact Alignment from Exonerate_protein2genome GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG aagttagtatagggtcaaatgttgtgggacccctgacctctcacccacagGAGTTTATGCATGGATTGGCATTAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtatgttctcactcattatatcaaaatgcatcaccatgttaaagtctact Alignment from Exonerate_coding2genome GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG aagttagtatagggtcaaatgttgtgggacccctgacctctcacccacagGAGTTTATGCATGGATTGGCATTAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtatgttctcactcattatatcaaaatgcatcaccatgttaaagtctact Alignment from GeneWise GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG aagttagtatagggtcaaatgttgtgggacccctgacctctcacccacagGAGTTTATGCATGGATTGGCATTAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtatgttctcactcattatatcaaaatgcatcaccatgttaaagtctact #### Entpd7_ID8800_9 --> 1 - 0 Original Alignment aCTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG cacttaacctgtatcaaaggaaaatgtgccacgttcttctctgcgcacagtCTGCTTGGCCAAACAACAGGGCTTAGCCCTGACAATCTCTTTCTTGACTCCTGCCTTCCTGTGGGCCTCTCAGACATTGTGAAGAGGAACAATCAGGTTCTCCACTACCGAAGAAGGGGGGACTGGGCCAGTTGTCGGACACTGCTCAGCCCTCTGCTAGCTTGTCCCAATACTAGCAAGGCTCCACTTAATGGGATCTATCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTCCTGCGCATTGGTGGTCACCACCATGGTACTACCTTTGTAGAGGCTGCTCATgtgagtaagtagcaactaacggcttatactgttgttctactgggcagtat Alignment from CESAR aCTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG cacttaacctgtatcaaaggaaaatgtgccacgttcttctctgcgcacagtCTGCTTGGCCAAACAACAGGGCTTAGCCCTGACAATCTCTTTCTTGACTCCTGCCTTCCTGTGGGCCTCTCAGACATTGTGAAGAGGAACAATCAGGTTCTCCACTACCGAAGAAGGGGGGACTGGGCCAGTTGTCGGACACTGCTCAGCCCTCTGCTAGCTTGTCCCAATACTAGCAAGGCTCCACTTAATGGGATCTATCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTCCTGCGCATTGGTGGTCACCACCATGGTACTACCTTTGTAGAGGCTGCTCATgtgagtaagtagcaactaacggcttatactgttgttctactgggcagtat Alignment from Spaln_aa2Genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG cacttaacctgtatcaaaggaaaatgtgccacgttcttctctgcgcacagTCTGCTTGGCCAAACAACAGGGCTTAGCCCTGACAATCTCTTTCTTGACTCCTGCCTTCCTGTGGGCCTCTCAGACATTGTGAAGAGGAACAATCAGGTTCTCCACTACCGAAGAAGGGGGGACTGGGCCAGTTGTCGGACACTGCTCAGCCCTCTGCTAGCTTGTCCCAATACTAGCAAGGCTCCACTTAATGGGATCTATCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTCCTGCGCATTGGTGGTCACCACCATGGTACTACCTTTGTAGAGGCTGCTCATgtgagtaagtagcaactaacggcttatactgttgttctactgggcagtat Alignment from Spaln_nt2Genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG cacttaacctgtatcaaaggaaaatgtgccacgttcttctctgcgcacagTCTGCTTGGCCAAACAACAGGGCTTAGCCCTGACAATCTCTTTCTTGACTCCTGCCTTCCTGTGGGCCTCTCAGACATTGTGAAGAGGAACAATCAGGTTCTCCACTACCGAAGAAGGGGGGACTGGGCCAGTTGTCGGACACTGCTCAGCCCTCTGCTAGCTTGTCCCAATACTAGCAAGGCTCCACTTAATGGGATCTATCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTCCTGCGCATTGGTGGTCACCACCATGGTACTACCTTTGTAGAGGCTGCTCATgtgagtaagtagcaactaacggcttatactgttgttctactgggcagtat Alignment from Pairagon ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG cacttaacctgtatcaaaggaaaatgtgccacgttcttctctgcgcacagTCTGCTTGGCCAAACAACAGGGCTTAGCCCTGACAATCTCTTTCTTGACTCCTGCCTTCCTGTGGGCCTCTCAGACATTGTGAAGAGGAACAATCAGGTTCTCCACTACCGAAGAAGGGGGGACTGGGCCAGTTGTCGGACACTGCTCAGCCCTCTGCTAGCTTGTCCCAATACTAGCAAGGCTCCACTTAATGGGATCTATCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTCCTGCGCATTGGTGGTCACCACCATGGTACTACCTTTGTAGAGGCTGCTCATgtgagtaagtagcaactaacggcttatactgttgttctactgggcagtat Alignment from Exonerate_protein2genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG cacttaacctgtatcaaaggaaaatgtgccacgttcttctctgcgcacagTCTGCTTGGCCAAACAACAGGGCTTAGCCCTGACAATCTCTTTCTTGACTCCTGCCTTCCTGTGGGCCTCTCAGACATTGTGAAGAGGAACAATCAGGTTCTCCACTACCGAAGAAGGGGGGACTGGGCCAGTTGTCGGACACTGCTCAGCCCTCTGCTAGCTTGTCCCAATACTAGCAAGGCTCCACTTAATGGGATCTATCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTCCTGCGCATTGGTGGTCACCACCATGGTACTACCTTTGTAGAGGCTGCTCATgtgagtaagtagcaactaacggcttatactgttgttctactgggcagtat Alignment from Exonerate_coding2genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG cacttaacctgtatcaaaggaaaatgtgccacgttcttctctgcgcacagTCTGCTTGGCCAAACAACAGGGCTTAGCCCTGACAATCTCTTTCTTGACTCCTGCCTTCCTGTGGGCCTCTCAGACATTGTGAAGAGGAACAATCAGGTTCTCCACTACCGAAGAAGGGGGGACTGGGCCAGTTGTCGGACACTGCTCAGCCCTCTGCTAGCTTGTCCCAATACTAGCAAGGCTCCACTTAATGGGATCTATCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTCCTGCGCATTGGTGGTCACCACCATGGTACTACCTTTGTAGAGGCTGCTCATgtgagtaagtagcaactaacggcttatactgttgttctactgggcagtat Alignment from GeneWise ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG cacttaacctgtatcaaaggaaaatgtgccacgttcttctctgcgcacagTCTGCTTGGCCAAACAACAGGGCTTAGCCCTGACAATCTCTTTCTTGACTCCTGCCTTCCTGTGGGCCTCTCAGACATTGTGAAGAGGAACAATCAGGTTCTCCACTACCGAAGAAGGGGGGACTGGGCCAGTTGTCGGACACTGCTCAGCCCTCTGCTAGCTTGTCCCAATACTAGCAAGGCTCCACTTAATGGGATCTATCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTCCTGCGCATTGGTGGTCACCACCATGGTACTACCTTTGTAGAGGCTGCTCATgtgagtaagtagcaactaacggcttatactgttgttctactgggcagtat #### Entpd7_ID8801_10 --> 0 - 2 Original Alignment GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCaa ttgggctaggtctgtctatggtctttcctttcttttaattcttttccaagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCaagtaaggcactttctgacttgtggtatcctctcccaaagcctccagtgcaa Alignment from CESAR GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCaa ttgggctaggtctgtctatggtctttcctttcttttaattcttttccaagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCaagtaaggcactttctgacttgtggtatcctctcccaaagcctccagtgcaa Alignment from Spaln_aa2Genome GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtctttcctttcttttaattcttttccaagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcactttctgacttgtggtatcctctcccaaagcctccagtgcaa Alignment from Spaln_nt2Genome GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtctttcctttcttttaattcttttccaagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcactttctgacttgtggtatcctctcccaaagcctccagtgcaa Alignment from Pairagon GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtctttcctttcttttaattcttttccaagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcactttctgacttgtggtatcctctcccaaagcctccagtgcaa Alignment from Exonerate_protein2genome GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtctttcctttcttttaattcttttccaagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcactttctgacttgtggtatcctctcccaaagcctccagtgcaa Alignment from Exonerate_coding2genome GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtctttcctttcttttaattcttttccaagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcactttctgacttgtggtatcctctcccaaagcctccagtgcaa Alignment from GeneWise GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtctttcctttcttttaattcttttccaagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcactttctgacttgtggtatcctctcccaaagcctccagtgcaa #### Entpd7_ID8802_11 --> 1 - 2 Original Alignment gTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCag agtactgatccctctttttccagcatttctctctttcccaactaacccaggTATCAGTGTTTTAAGTCTGCCTGGATGTATGAAGTCTTGCACGAAGAGTTCCATTTCCCCTATGACTACCCTAACTTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACACTGGGAGCGACTTTGTATAAAACGCATTTCTTGCCCCTCaggtgagcactacatctaatatactctgttccagatgcaaataaacaatcaa Alignment from CESAR gTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCag agtactgatccctctttttccagcatttctctctttcccaactaacccaggTATCAGTGTTTTAAGTCTGCCTGGATGTATGAAGTCTTGCACGAAGAGTTCCATTTCCCCTATGACTACCCTAACTTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACACTGGGAGCGACTTTGTATAAAACGCATTTCTTGCCCCTCaggtgagcactacatctaatatactctgttccagatgcaaataaacaatcaa Alignment from Spaln_aa2Genome GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG agtactgatccctctttttccagcatttctctctttcccaactaacccagGTATCAGTGTTTTAAGTCTGCCTGGATGTATGAAGTCTTGCACGAAGAGTTCCATTTCCCCTATGACTACCCTAACTTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACACTGGGAGCGACTTTGTATAAAACGCATTTCTTGCCCCTCAGgtgagcactacatctaatatactctgttccagatgcaaataaacaatcaa Alignment from Spaln_nt2Genome GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG agtactgatccctctttttccagcatttctctctttcccaactaacccagGTATCAGTGTTTTAAGTCTGCCTGGATGTATGAAGTCTTGCACGAAGAGTTCCATTTCCCCTATGACTACCCTAACTTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACACTGGGAGCGACTTTGTATAAAACGCATTTCTTGCCCCTCAGgtgagcactacatctaatatactctgttccagatgcaaataaacaatcaa Alignment from Pairagon GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG agtactgatccctctttttccagcatttctctctttcccaactaacccagGTATCAGTGTTTTAAGTCTGCCTGGATGTATGAAGTCTTGCACGAAGAGTTCCATTTCCCCTATGACTACCCTAACTTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACACTGGGAGCGACTTTGTATAAAACGCATTTCTTGCCCCTCAGgtgagcactacatctaatatactctgttccagatgcaaataaacaatcaa Alignment from Exonerate_protein2genome GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG agtactgatccctctttttccagcatttctctctttcccaactaacccagGTATCAGTGTTTTAAGTCTGCCTGGATGTATGAAGTCTTGCACGAAGAGTTCCATTTCCCCTATGACTACCCTAACTTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACACTGGGAGCGACTTTGTATAAAACGCATTTCTTGCCCCTCAGgtgagcactacatctaatatactctgttccagatgcaaataaacaatcaa Alignment from Exonerate_coding2genome GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG agtactgatccctctttttccagcatttctctctttcccaactaacccagGTATCAGTGTTTTAAGTCTGCCTGGATGTATGAAGTCTTGCACGAAGAGTTCCATTTCCCCTATGACTACCCTAACTTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACACTGGGAGCGACTTTGTATAAAACGCATTTCTTGCCCCTCAGgtgagcactacatctaatatactctgttccagatgcaaataaacaatcaa Alignment from GeneWise GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG agtactgatccctctttttccagcatttctctctttcccaactaacccagGTATCAGTGTTTTAAGTCTGCCTGGATGTATGAAGTCTTGCACGAAGAGTTCCATTTCCCCTATGACTACCCTAACTTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACACTGGGAGCGACTTTGTATAAAACGCATTTCTTGCCCCTCAGgtgagcactacatctaatatactctgttccagatgcaaataaacaatcaa #### Erlin1_ID8897_7 --> 0 - 2 Original Alignment GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAat tggtaatggtaagttataaacatagatgtgccccttggtgtgtcctgcagGCTGTGCATATTACAAAACCCAAAATCCCAGAGGCCATAAGAAGAAACTTTGAATTAatgtgagcaagacccttgattaattaaaacagtctgaaggagctggtaaaca Alignment from CESAR GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAat tggtaatggtaagttataaacatagatgtgccccttggtgtgtcctgcagGCTGTGCATATTACAAAACCCAAAATCCCAGAGGCCATAAGAAGAAACTTTGAATTAatgtgagcaagacccttgattaattaaaacagtctgaaggagctggtaaaca Alignment from Spaln_aa2Genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT tggtaatggtaagttataaacatagatgtgccccttggtgtgtcctgcagGCTGTGCATATTACAAAACCCAAAATCCCAGAGGCCATAAGAAGAAACTTTGAATTAATgtgagcaagacccttgattaattaaaacagtctgaaggagctggtaaaca Alignment from Spaln_nt2Genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT tggtaatggtaagttataaacatagatgtgccccttggtgtgtcctgcagGCTGTGCATATTACAAAACCCAAAATCCCAGAGGCCATAAGAAGAAACTTTGAATTAATgtgagcaagacccttgattaattaaaacagtctgaaggagctggtaaaca Alignment from Pairagon GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT tggtaatggtaagttataaacatagatgtgccccttggtgtgtcctgcagGCTGTGCATATTACAAAACCCAAAATCCCAGAGGCCATAAGAAGAAACTTTGAATTAATgtgagcaagacccttgattaattaaaacagtctgaaggagctggtaaaca Alignment from Exonerate_protein2genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT tggtaatggtaagttataaacatagatgtgccccttggtgtgtcctgcagGCTGTGCATATTACAAAACCCAAAATCCCAGAGGCCATAAGAAGAAACTTTGAATTAATgtgagcaagacccttgattaattaaaacagtctgaaggagctggtaaaca Alignment from Exonerate_coding2genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT tggtaatggtaagttataaacatagatgtgccccttggtgtgtcctgcagGCTGTGCATATTACAAAACCCAAAATCCCAGAGGCCATAAGAAGAAACTTTGAATTAATgtgagcaagacccttgattaattaaaacagtctgaaggagctggtaaaca Alignment from GeneWise GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT tggtaatggtaagttataaacatagatgtgccccttggtgtgtcctgcagGCTGTGCATATTACAAAACCCAAAATCCCAGAGGCCATAAGAAGAAACTTTGAATTAATgtgagcaagacccttgattaattaaaacagtctgaaggagctggtaaaca #### Erlin1_ID8898_6 --> 2 - 0 Original Alignment atCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG cttgagtaactgactgctttactgcaatataatagagttgtgttttttagatCATATAGATGAAAATCTCAAGCAAGCTTTGCAAAAGGACTTGAATGCAATGGCCCCAGGACTCATGATCCAAgtattgtccaatagaattgttctaaactccctgtctgggaataccacact Alignment from CESAR atCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG cttgagtaactgactgctttactgcaatataatagagttgtgttttttagatCATATAGATGAAAATCTCAAGCAAGCTTTGCAAAAGGACTTGAATGCAATGGCCCCAGGACTCATGATCCAAgtattgtccaatagaattgttctaaactccctgtctgggaataccacact Alignment from Spaln_aa2Genome ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG cttgagtaactgactgctttactgcaatataatagagttgtgttttttagATCATATAGATGAAAATCTCAAGCAAGCTTTGCAAAAGGACTTGAATGCAATGGCCCCAGGACTCATGATCCAAgtattgtccaatagaattgttctaaactccctgtctgggaataccacact Alignment from Spaln_nt2Genome ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG cttgagtaactgactgctttactgcaatataatagagttgtgttttttagATCATATAGATGAAAATCTCAAGCAAGCTTTGCAAAAGGACTTGAATGCAATGGCCCCAGGACTCATGATCCAAgtattgtccaatagaattgttctaaactccctgtctgggaataccacact Alignment from Pairagon ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG cttgagtaactgactgctttactgcaatataatagagttgtgttttttagATCATATAGATGAAAATCTCAAGCAAGCTTTGCAAAAGGACTTGAATGCAATGGCCCCAGGACTCATGATCCAAgtattgtccaatagaattgttctaaactccctgtctgggaataccacact Alignment from Exonerate_protein2genome ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG cttgagtaactgactgctttactgcaatataatagagttgtgttttttagATCATATAGATGAAAATCTCAAGCAAGCTTTGCAAAAGGACTTGAATGCAATGGCCCCAGGACTCATGATCCAAgtattgtccaatagaattgttctaaactccctgtctgggaataccacact Alignment from Exonerate_coding2genome ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG cttgagtaactgactgctttactgcaatataatagagttgtgttttttagATCATATAGATGAAAATCTCAAGCAAGCTTTGCAAAAGGACTTGAATGCAATGGCCCCAGGACTCATGATCCAAgtattgtccaatagaattgttctaaactccctgtctgggaataccacact Alignment from GeneWise ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG cttgagtaactgactgctttactgcaatataatagagttgtgttttttagATCATATAGATGAAAATCTCAAGCAAGCTTTGCAAAAGGACTTGAATGCAATGGCCCCAGGACTCATGATCCAAgtattgtccaatagaattgttctaaactccctgtctgggaataccacact #### Ermp1_ID6318_12 --> 0 - 2 Original Alignment CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCag taacctgtactaactttcctgtggaccccctatgattgttgttgttccagCATGTGAGTAGAACATTCCATAACTTAGAAGGAAGTGTAGTAAAGAGAGACTCTGGAATATGGATTAATGGATTTGATTATACAGGAATGTCTCATGTGATGCCGCACATTCCTGAGATCAATGACACTATCCGGGCTCACTGTGAGGAGGATACTCCACTTTGTGGCTTCCCTTGGTATCTTCCAGTACACCTCCTGATCaggtatgcatgagacacatatgtttctaagctctgcaatccagttagtactt Alignment from CESAR CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCag taacctgtactaactttcctgtggaccccctatgattgttgttgttccagCATGTGAGTAGAACATTCCATAACTTAGAAGGAAGTGTAGTAAAGAGAGACTCTGGAATATGGATTAATGGATTTGATTATACAGGAATGTCTCATGTGATGCCGCACATTCCTGAGATCAATGACACTATCCGGGCTCACTGTGAGGAGGATACTCCACTTTGTGGCTTCCCTTGGTATCTTCCAGTACACCTCCTGATCaggtatgcatgagacacatatgtttctaagctctgcaatccagttagtactt Alignment from Spaln_aa2Genome CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG taacctgtactaactttcctgtggaccccctatgattgttgttgttccagCATGTGAGTAGAACATTCCATAACTTAGAAGGAAGTGTAGTAAAGAGAGACTCTGGAATATGGATTAATGGATTTGATTATACAGGAATGTCTCATGTGATGCCGCACATTCCTGAGATCAATGACACTATCCGGGCTCACTGTGAGGAGGATACTCCACTTTGTGGCTTCCCTTGGTATCTTCCAGTACACCTCCTGATCAGgtatgcatgagacacatatgtttctaagctctgcaatccagttagtactt Alignment from Spaln_nt2Genome CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG taacctgtactaactttcctgtggaccccctatgattgttgttgttccagCATGTGAGTAGAACATTCCATAACTTAGAAGGAAGTGTAGTAAAGAGAGACTCTGGAATATGGATTAATGGATTTGATTATACAGGAATGTCTCATGTGATGCCGCACATTCCTGAGATCAATGACACTATCCGGGCTCACTGTGAGGAGGATACTCCACTTTGTGGCTTCCCTTGGTATCTTCCAGTACACCTCCTGATCAGgtatgcatgagacacatatgtttctaagctctgcaatccagttagtactt Alignment from Pairagon CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG taacctgtactaactttcctgtggaccccctatgattgttgttgttccagCATGTGAGTAGAACATTCCATAACTTAGAAGGAAGTGTAGTAAAGAGAGACTCTGGAATATGGATTAATGGATTTGATTATACAGGAATGTCTCATGTGATGCCGCACATTCCTGAGATCAATGACACTATCCGGGCTCACTGTGAGGAGGATACTCCACTTTGTGGCTTCCCTTGGTATCTTCCAGTACACCTCCTGATCAGgtatgcatgagacacatatgtttctaagctctgcaatccagttagtactt Alignment from Exonerate_protein2genome CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG taacctgtactaactttcctgtggaccccctatgattgttgttgttccagCATGTGAGTAGAACATTCCATAACTTAGAAGGAAGTGTAGTAAAGAGAGACTCTGGAATATGGATTAATGGATTTGATTATACAGGAATGTCTCATGTGATGCCGCACATTCCTGAGATCAATGACACTATCCGGGCTCACTGTGAGGAGGATACTCCACTTTGTGGCTTCCCTTGGTATCTTCCAGTACACCTCCTGATCAGgtatgcatgagacacatatgtttctaagctctgcaatccagttagtactt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG taacctgtactaactttcctgtggaccccctatgattgttgttgttccagCATGTGAGTAGAACATTCCATAACTTAGAAGGAAGTGTAGTAAAGAGAGACTCTGGAATATGGATTAATGGATTTGATTATACAGGAATGTCTCATGTGATGCCGCACATTCCTGAGATCAATGACACTATCCGGGCTCACTGTGAGGAGGATACTCCACTTTGTGGCTTCCCTTGGTATCTTCCAGTACACCTCCTGATCAGgtatgcatgagacacatatgtttctaagctctgcaatccagttagtactt #### Ermp1_ID6322_8 --> 2 - 0 Original Alignment atGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG cccttattgggtgtgtatattaaatgttcctccctttccctttcgagcagacGCAAATTAT---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACCATAGCACTATTCATTTCCCTGATTGGACAATGT---CCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAAAGGTTTTATTACATGgtaaagatatagaacaaccttccctccatcccatttggctgcttactgaa Alignment from CESAR atGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG cccttattgggtgtgtatattaaatgttcctccctttccctttcgagcagacGCAAATTAT---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACCATAGCACTATTCATTTCCCTGATTGGACAATGT---CCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAAAGGTTTTATTACATGgtaaagatatagaacaaccttccctccatcccatttggctgcttactgaa Alignment from Spaln_aa2Genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG cccttattgggtgtgtatattaaatgttcctccctttccctttcgagcagACGCAAATTAT---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACCATAGCACTATTCATTTCCCTGATTGGACAATGT---CCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAAAGGTTTTATTACATGgtaaagatatagaacaaccttccctccatcccatttggctgcttactgaa Alignment from Spaln_nt2Genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG cccttattgggtgtgtatattaaatgttcctccctttccctttcgagcagACGCAAATTA---TAGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACCATAGCACTATTCATTTCCCTGATTGGACAATGTC---CTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAAAGGTTTTATTACATGgtaaagatatagaacaaccttccctccatcccatttggctgcttactgaa Alignment from Pairagon ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG cccttattgggtgtgtatattaaatgttcctccctttccctttcgagcagACGCAAATTAT---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACCATAGCACTATTCATTTCCCTGATTGGACAATGTC---CTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAAAGGTTTTATTACATGgtaaagatatagaacaaccttccctccatcccatttggctgcttactgaa Alignment from Exonerate_protein2genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG cccttattgggtgtgtatattaaatgttcctccctttccctttcgagcagACGCAAATTAT---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACCATAGCACTATTCATTTCCCTGATTGGACAA---TGTCCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAAAGGTTTTATTACATGgtaaagatatagaacaaccttccctccatcccatttggctgcttactgaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG cccttattgggtgtgtatattaaatgttcctccctttccctttcgagcagACGCAAATTAT---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACCATAGCACTATTCATTTCCCTGATTGGACAA---TGTCCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAAAGGTTTTATTACATGgtaaagatatagaacaaccttccctccatcccatttggctgcttactgaa #### Ermp1_ID6325_5 --> 2 - 1 Original Alignment gcCCTGAAAATCCTTGGTTGGTCCAGGCTTACGTTTCGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCTCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACCGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAg agctagcggtgtaaattgcatatattcttcattccggtctctgtttctaggtCCTGAAAATCCTTGGTTGGTCCAAGCTTACGTTTTGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCCCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACTGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAggtgagtcacttagattggagagttgtagtgtaggacgtttaaatccttgt Alignment from CESAR gcCCTGAAAATCCTTGGTTGGTCCAGGCTTACGTTTCGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCTCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACCGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAg agctagcggtgtaaattgcatatattcttcattccggtctctgtttctaggtCCTGAAAATCCTTGGTTGGTCCAAGCTTACGTTTTGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCCCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACTGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAggtgagtcacttagattggagagttgtagtgtaggacgtttaaatccttgt Alignment from Spaln_aa2Genome GCCCTGAAAATCCTTGGTTGGTCCAGGCTTACGTTTCGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCTCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACCGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAG agctagcggtgtaaattgcatatattcttcattccggtctctgtttctagGTCCTGAAAATCCTTGGTTGGTCCAAGCTTACGTTTTGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCCCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACTGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAGgtgagtcacttagattggagagttgtagtgtaggacgtttaaatccttgt Alignment from Spaln_nt2Genome GCCCTGAAAATCCTTGGTTGGTCCAGGCTTACGTTTCGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCTCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACCGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAG agctagcggtgtaaattgcatatattcttcattccggtctctgtttctagGTCCTGAAAATCCTTGGTTGGTCCAAGCTTACGTTTTGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCCCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACTGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAGgtgagtcacttagattggagagttgtagtgtaggacgtttaaatccttgt Alignment from Pairagon GCCCTGAAAATCCTTGGTTGGTCCAGGCTTACGTTTCGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCTCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACCGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAG agctagcggtgtaaattgcatatattcttcattccggtctctgtttctagGTCCTGAAAATCCTTGGTTGGTCCAAGCTTACGTTTTGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCCCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACTGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAGgtgagtcacttagattggagagttgtagtgtaggacgtttaaatccttgt Alignment from Exonerate_protein2genome GCCCTGAAAATCCTTGGTTGGTCCAGGCTTACGTTTCGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCTCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACCGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAG agctagcggtgtaaattgcatatattcttcattccggtctctgtttctagGTCCTGAAAATCCTTGGTTGGTCCAAGCTTACGTTTTGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCCCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACTGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAGgtgagtcacttagattggagagttgtagtgtaggacgtttaaatccttgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCCTGAAAATCCTTGGTTGGTCCAGGCTTACGTTTCGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCTCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACCGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAG agctagcggtgtaaattgcatatattcttcattccggtctctgtttctagGTCCTGAAAATCCTTGGTTGGTCCAAGCTTACGTTTTGGCAGCTAAACACCCTTTTGCCTCTGTGGTGGCCCAGGAGGTTTTCCAGAGTGGGATCATTCCCTCTGACACTGACTTCAGAATCTACAGGGATTTTGGGAACATTCCAGgtgagtcacttagattggagagttgtagtgtaggacgtttaaatccttgt #### Exoc6_ID7369_8 --> 0 - 0 Original Alignment GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG actgaacgccaggagttgctcttgttctatgctctctttctgtgtttcagGTCTTGACTGTTCAAGATCTTGTGGATTTTTCCACTGTTTACCGCTGTCTGCATATTTATTCTGCTTTGgtaagtattaggtgattctaacctcattgattcatatgatctctataata Alignment from CESAR GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG actgaacgccaggagttgctcttgttctatgctctctttctgtgtttcagGTCTTGACTGTTCAAGATCTTGTGGATTTTTCCACTGTTTACCGCTGTCTGCATATTTATTCTGCTTTGgtaagtattaggtgattctaacctcattgattcatatgatctctataata Alignment from Spaln_aa2Genome GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG actgaacgccaggagttgctcttgttctatgctctctttctgtgtttcagGTCTTGACTGTTCAAGATCTTGTGGATTTTTCCACTGTTTACCGCTGTCTGCATATTTATTCTGCTTTGgtaagtattaggtgattctaacctcattgattcatatgatctctataata Alignment from Spaln_nt2Genome GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG actgaacgccaggagttgctcttgttctatgctctctttctgtgtttcagGTCTTGACTGTTCAAGATCTTGTGGATTTTTCCACTGTTTACCGCTGTCTGCATATTTATTCTGCTTTGgtaagtattaggtgattctaacctcattgattcatatgatctctataata Alignment from Pairagon GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG actgaacgccaggagttgctcttgttctatgctctctttctgtgtttcagGTCTTGACTGTTCAAGATCTTGTGGATTTTTCCACTGTTTACCGCTGTCTGCATATTTATTCTGCTTTGgtaagtattaggtgattctaacctcattgattcatatgatctctataata Alignment from Exonerate_protein2genome GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG actgaacgccaggagttgctcttgttctatgctctctttctgtgtttcagGTCTTGACTGTTCAAGATCTTGTGGATTTTTCCACTGTTTACCGCTGTCTGCATATTTATTCTGCTTTGgtaagtattaggtgattctaacctcattgattcatatgatctctataata Alignment from Exonerate_coding2genome GAGGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG actgaacgccaggagttgctcttgttctatgctctctttctgtgtttCAGGTCTTGACTGTTCAAGATCTTGTGGATTTTTCCACTGTTTACCGCTGTCTGCATATTTATTCTGCTTTGgtaagtattaggtgattctaacctcattgattcatatgatctctataata Alignment from GeneWise GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG actgaacgccaggagttgctcttgttctatgctctctttctgtgtttcagGTCTTGACTGTTCAAGATCTTGTGGATTTTTCCACTGTTTACCGCTGTCTGCATATTTATTCTGCTTTGgtaagtattaggtgattctaacctcattgattcatatgatctctataata #### Exoc6_ID7378_15 --> 0 - 2 Original Alignment CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAag aagaaggatcgaatacagttctgtgtcattataaacgtttatttttatagCAGTCTTTCCCCAAGAAGTTTCCCATGTCCCAGTCTGTGCCTCTTATTTACATCCAGGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAaggtaggccagttcactctattagggaaatcaatactcattctaccaagaca Alignment from CESAR CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAag aagaaggatcgaatacagttctgtgtcattataaacgtttatttttatagCAGTCTTTCCCCAAGAAGTTTCCCATGTCCCAGTCTGTGCCTCTTATTTACATCCAGGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAaggtaggccagttcactctattagggaaatcaatactcattctaccaagaca Alignment from Spaln_aa2Genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG aagaaggatcgaatacagttctgtgtcattataaacgtttatttttatagCAGTCTTTCCCCAAGAAGTTTCCCATGTCCCAGTCTGTGCCTCTTATTTACATCCAGGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaggccagttcactctattagggaaatcaatactcattctaccaagaca Alignment from Spaln_nt2Genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG aagaaggatcgaatacagttctgtgtcattataaacgtttatttttatagCAGTCTTTCCCCAAGAAGTTTCCCATGTCCCAGTCTGTGCCTCTTATTTACATCCAGGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaggccagttcactctattagggaaatcaatactcattctaccaagaca Alignment from Pairagon CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG aagaaggatcgaatacagttctgtgtcattataaacgtttatttttatagCAGTCTTTCCCCAAGAAGTTTCCCATGTCCCAGTCTGTGCCTCTTATTTACATCCAGGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaggccagttcactctattagggaaatcaatactcattctaccaagaca Alignment from Exonerate_protein2genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG aagaaggatcgaatacagttctgtgtcattataaacgtttatttttatagCAGTCTTTCCCCAAGAAGTTTCCCATGTCCCAGTCTGTGCCTCTTATTTACATCCAGGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaggccagttcactctattagggaaatcaatactcattctaccaagaca Alignment from Exonerate_coding2genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG aagaaggatcgaatacagttctgtgtcattataaacgtttatttttatagCAGTCTTTCCCCAAGAAGTTTCCCATGTCCCAGTCTGTGCCTCTTATTTACATCCAGGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaggccagttcactctattagggaaatcaatactcattctaccaagaca Alignment from GeneWise CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG aagaaggatcgaatacagttctgtgtcattataaacgtttatttttatagCAGTCTTTCCCCAAGAAGTTTCCCATGTCCCAGTCTGTGCCTCTTATTTACATCCAGGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaggccagttcactctattagggaaatcaatactcattctaccaagaca #### Fads1_ID2692_6 --> 0 - 1 Original Alignment CTCGGGAGGGAAAAGAAGAAGCACATGCCATACAACCATCAGCACAAGTACTTCTTCCTCa atattaggaaagatcatgaggtagaaggggctgttcttctttttccatagCTTGGGAGAGAAAAGAAGAAACAGATGCCATACAACCATCAGCATAAGTACTTTTACCTTagtgagatatagccaaggagcagtagtaggcggggcatcttaacctcagag Alignment from CESAR CTCGGGAGGGAAAAGAAGAAGCACATGCCATACAACCATCAGCACAAGTACTTCTTCCTCa atattaggaaagatcatgaggtagaaggggctgttcttctttttccatagCTTGGGAGAGAAAAGAAGAAACAGATGCCATACAACCATCAGCATAAGTACTTTTACCTTagtgagatatagccaaggagcagtagtaggcggggcatcttaacctcagag Alignment from Spaln_aa2Genome CTCGGGAGGGAAAAGAAGAAGCACATGCCATACAACCATCAGCACAAGTACTTCTTCCTCA atattaggaaagatcatgaggtagaaggggctgttcttctttttccatagCTTGGGAGAGAAAAGAAGAAACAGATGCCATACAACCATCAGCATAAGTACTTTTACCTTAgtgagatatagccaaggagcagtagtaggcggggcatcttaacctcagag Alignment from Spaln_nt2Genome CTCGGGAGGGAAAAGAAGAAGCACATGCCATACAACCATCAGCACAAGTACTTCTTCCTCA atattaggaaagatcatgaggtagaaggggctgttcttctttttccatagCTTGGGAGAGAAAAGAAGAAACAGATGCCATACAACCATCAGCATAAGTACTTTTACCTTAgtgagatatagccaaggagcagtagtaggcggggcatcttaacctcagag Alignment from Pairagon CTCGGGAGGGAAAAGAAGAAGCACATGCCATACAACCATCAGCACAAGTACTTCTTCCTCA atattaggaaagatcatgaggtagaaggggctgttcttctttttccatagCTTGGGAGAGAAAAGAAGAAACAGATGCCATACAACCATCAGCATAAGTACTTTTACCTTAgtgagatatagccaaggagcagtagtaggcggggcatcttaacctcagag Alignment from Exonerate_protein2genome CTCGGGAGGGAAAAGAAGAAGCACATGCCATACAACCATCAGCACAAGTACTTCTTCCTCA atattaggaaagatcatgaggtagaaggggctgttcttctttttccatagCTTGGGAGAGAAAAGAAGAAACAGATGCCATACAACCATCAGCATAAGTACTTTTACCTTAgtgagatatagccaaggagcagtagtaggcggggcatcttaacctcagag Alignment from Exonerate_coding2genome CTCGGGAGGGAAAAGAAGAAGCACATGCCATACAACCATCAGCACAAGTACTTCTTCCTCA atattaggaaagatcatgaggtagaaggggctgttcttctttttccatagCTTGGGAGAGAAAAGAAGAAACAGATGCCATACAACCATCAGCATAAGTACTTTTACCTTAgtgagatatagccaaggagcagtagtaggcggggcatcttaacctcagag Alignment from GeneWise CTCGGGAGGGAAAAGAAGAAGCACATGCCATACAACCATCAGCACAAGTACTTCTTCCTCA atattaggaaagatcatgaggtagaaggggctgttcttctttttccatagCTTGGGAGAGAAAAGAAGAAACAGATGCCATACAACCATCAGCATAAGTACTTTTACCTTAgtgagatatagccaaggagcagtagtaggcggggcatcttaacctcagag #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGAC---TCTGCCCACTGGTGGAATTTCCAGCACTTGAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggatcaaca Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGAC---TCTGCCCACTGGTGGAATTTCCAGCACTTGAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggatttcgt Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGAC---TCTGCCCACTGGTGGAATTTCCAGCACTTGAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggatcaaca Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGAC---TCTGCCCACTGGTGGAATTTCCAGCACTTGAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggatcaaca Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGAC---TCTGCCCACTGGTGGAATTTCCAGCACTTGAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggatcaaca Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatCAGGACTCTGCCCACTGGTGGAATTTCCAGCACTTGAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggatcaaca Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatCAGGACTCTGCCCACTGGTGGAATTTCCAGCACTTGAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggatcaaca Alignment from GeneWise ---TCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tgcacacttgcacacaacaatgcaagcagacactcctctgttcccatcagGACTCTGCCCACTGGTGGAATTTCCAGCACTTGAAGCATCATGCCAAGCCCAACATATTCCACAAAGACCCTGATGTAACTGTTACACCTGTCTTCCTACTTGGTGTATCATCTGTGGAAgtaagtaggtccctgcaatctacaggatgtttctttcccctggatcaaca #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttggacaggcaaagtgattccagtttagccccctaccctgtcacctgcagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACCGGCACACTAATCCTCTTTGTCATTGTGcggtacggtgctacttgctgagcaccagatctatttaacttggccatagata Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttggacaggcaaagtgattccagtttagccccctaccctgtcacctgcagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACCGGCACACTAATCCTCTTTGTCATTGTGcggtacggtgctacttgctgagcaccagatctatttaacttggccatagata Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttggacaggcaaagtgattccagtttagccccctaccctgtcacctgcagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACCGGCACACTAATCCTCTTTGTCATTGTGCGgtacggtgctacttgctgagcaccagatctatttaacttggccatagata Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttggacaggcaaagtgattccagtttagccccctaccctgtcacctgcagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACCGGCACACTAATCCTCTTTGTCATTGTGCGgtacggtgctacttgctgagcaccagatctatttaacttggccatagata Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttggacaggcaaagtgattccagtttagccccctaccctgtcacctgcagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACCGGCACACTAATCCTCTTTGTCATTGTGCGgtacggtgctacttgctgagcaccagatctatttaacttggccatagata Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttggacaggcaaagtgattccagtttagccccctaccctgtcacctgcagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACCGGCACACTAATCCTCTTTGTCATTGTGCGgtacggtgctacttgctgagcaccagatctatttaacttggccatagata Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttggacaggcaaagtgattccagtttagccccctaccctgtcacctgcagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACCGGCACACTAATCCTCTTTGTCATTGTGCGgtacggtgctacttgctgagcaccagatctatttaacttggccatagata Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttggacaggcaaagtgattccagtttagccccctaccctgtcacctgcagGACTTACTGTGGGCTGCCAGCTTCTACACCCACTTTTTTTTGTCCTACTCACCCTTCTATGGAGTCACCGGCACACTAATCCTCTTTGTCATTGTGCGgtacggtgctacttgctgagcaccagatctatttaacttggccatagata #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTTACACCAAACTCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagatctgaatactgtcttctcctcagCAGTTG Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTTACACCAAACTCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagatcctcccatcctgtgcttcacagCAGTTG Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTTACACCAAACTCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagatctgaatactgtcttctcctcagCAGTTG Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCC------TGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTTACACCAAACTCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagatctgaatactgtcttctcctcagCAGTTG Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTTACACCAAACTCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagatctgaatactgtcttctcctcagCAGTTG Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTTACACCAAACTCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagatctgaatactgtcttctcctcagCAGTTG Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTTACACCAAACTCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagatctgaatactgtcttctcctcagCAGTTG Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG AAATTA ggactttataaatgtaggttcaccttattatcactgttctgtgtctccagTGCCCTCCAGGAATGAAACAGCAGGTGTTACTACTTTACACCAAACTCCTTGAACAAATCCAGCAGCCCCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagtaagtatagttgaagatctgaatactgtcttctcctcagCAGTTG #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG gttgataaatccttttctttgtcattattgtctcaacctgtttcttgcagaTCTGAGATGGGAATTCTGACATCAACGGCCCTGCTACACCGATTTGTCCGGCAAGTAACATCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATTCTTGCTGAACAAAAGGAACCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGGGACATAGGATAATTGAGCATTGTGATCACATATCAGATGAAgtaggtcaaatgcagtcattgtgtactcatggaacaggcaggtatatatg Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG gttgataaatccttttctttgtcattattgtctcaacctgtttcttgcagaTCTGAGATGGGAATTCTGACATCAACGGCCCTGCTACACCGATTTGTCCGGCAAGTAACATCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATTCTTGCTGAACAAAAGGAACCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGGGACATAGGATAATTGAGCATTGTGATCACATATCAGATGAAgtaggtcaaatgcagtcattgtgtactcatggaacaggcaggtatatatg Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG gttgataaatccttttctttgtcattattgtctcaacctgtttcttgcagATCTGAGATGGGAATTCTGACATCAACGGCCCTGCTACACCGATTTGTCCGGCAAGTAACATCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATTCTTGCTGAACAAAAGGAACCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGGGACATAGGATAATTGAGCATTGTGATCACATATCAGATGAAgtaggtcaaatgcagtcattgtgtactcatggaacaggcaggtatatatg Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG gttgataaatccttttctttgtcattattgtctcaacctgtttcttgcagATCTGAGATGGGAATTCTGACATCAACGGCCCTGCTACACCGATTTGTCCGGCAAGTAACATCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATTCTTGCTGAACAAAAGGAACCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGGGACATAGGATAATTGAGCATTGTGATCACATATCAGATGAAgtaggtcaaatgcagtcattgtgtactcatggaacaggcaggtatatatg Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG gttgataaatccttttctttgtcattattgtctcaacctgtttcttgcagATCTGAGATGGGAATTCTGACATCAACGGCCCTGCTACACCGATTTGTCCGGCAAGTAACATCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATTCTTGCTGAACAAAAGGAACCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGGGACATAGGATAATTGAGCATTGTGATCACATATCAGATGAAgtaggtcaaatgcagtcattgtgtactcatggaacaggcaggtatatatg Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG gttgataaatccttttctttgtcattattgtctcaacctgtttcttgcagATCTGAGATGGGAATTCTGACATCAACGGCCCTGCTACACCGATTTGTCCGGCAAGTAACATCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATTCTTGCTGAACAAAAGGAACCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGGGACATAGGATAATTGAGCATTGTGATCACATATCAGATGAAgtaggtcaaatgcagtcattgtgtactcatggaacaggcaggtatatatg Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG gttgataaatccttttctttgtcattattgtctcaacctgtttcttgcagATCTGAGATGGGAATTCTGACATCAACGGCCCTGCTACACCGATTTGTCCGGCAAGTAACATCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATTCTTGCTGAACAAAAGGAACCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGGGACATAGGATAATTGAGCATTGTGATCACATATCAGATGAAgtaggtcaaatgcagtcattgtgtactcatggaacaggcaggtatatatg Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG gttgataaatccttttctttgtcattattgtctcaacctgtttcttgcagATCTGAGATGGGAATTCTGACATCAACGGCCCTGCTACACCGATTTGTCCGGCAAGTAACATCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATTCTTGCTGAACAAAAGGAACCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGGGACATAGGATAATTGAGCATTGTGATCACATATCAGATGAAgtaggtcaaatgcagtcattgtgtactcatggaacaggcaggtatatatg #### Fam160b1_ID12360_11 --> 0 - 2 Original Alignment ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt aggaacagacaaatttgcagaaggagttaaccgacctcgtgttcctgcagATCAGCATAATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATACTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTgtgtaaaaagccctactgcatgccagagatttgtaatcttacttactgtgtt Alignment from CESAR ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt aggaacagacaaatttgcagaaggagttaaccgacctcgtgttcctgcagATCAGCATAATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATACTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTgtgtaaaaagccctactgcatgccagagatttgtaatcttacttactgtgtt Alignment from Spaln_aa2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT aggaacagacaaatttgcagaaggagttaaccgacctcgtgttcctgcagATCAGCATAATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATACTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtaaaaagccctactgcatgccagagatttgtaatcttacttactgtgtt Alignment from Spaln_nt2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT aggaacagacaaatttgcagaaggagttaaccgacctcgtgttcctgcagATCAGCATAATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATACTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtaaaaagccctactgcatgccagagatttgtaatcttacttactgtgtt Alignment from Pairagon ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT aggaacagacaaatttgcagaaggagttaaccgacctcgtgttcctgcagATCAGCATAATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATACTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtaaaaagccctactgcatgccagagatttgtaatcttacttactgtgtt Alignment from Exonerate_protein2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT aggaacagacaaatttgcagaaggagttaaccgacctcgtgttcctgcagATCAGCATAATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATACTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtaaaaagccctactgcatgccagagatttgtaatcttacttactgtgtt Alignment from Exonerate_coding2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT aggaacagacaaatttgcagaaggagttaaccgacctcgtgttcctgcagATCAGCATAATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATACTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtaaaaagccctactgcatgccagagatttgtaatcttacttactgtgtt Alignment from GeneWise ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT aggaacagacaaatttgcagaaggagttaaccgacctcgtgttcctgcagATCAGCATAATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATACTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtaaaaagccctactgcatgccagagatttgtaatcttacttactgtgtt #### Fam160b1_ID12365_16 --> 0 - 2 Original Alignment GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCat attgtgttgtttgaagttggtggcagactcttcctgttttgtgccttaagGTCGTCGGTGATCTAATGGTTCAGATCCAGCATATTCAAGACTTTACCCTTAAGCTCCTTCTGGTACGAAAAAGACTGCTTGGCCTGGAACCTGAAGGCCCCatgtgagagaaggcttccctgatcattcatggtgtcctaaatgcttaagtag Alignment from CESAR GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCat attgtgttgtttgaagttggtggcagactcttcctgttttgtgccttaagGTCGTCGGTGATCTAATGGTTCAGATCCAGCATATTCAAGACTTTACCCTTAAGCTCCTTCTGGTACGAAAAAGACTGCTTGGCCTGGAACCTGAAGGCCCCatgtgagagaaggcttccctgatcattcatggtgtcctaaatgcttaagtct Alignment from Spaln_aa2Genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT attgtgttgtttgaagttggtggcagactcttcctgttttgtgccttaagGTCGTCGGTGATCTAATGGTTCAGATCCAGCATATTCAAGACTTTACCCTTAAGCTCCTTCTGGTACGAAAAAGACTGCTTGGCCTGGAACCTGAAGGCCCCATgtgagagaaggcttccctgatcattcatggtgtcctaaatgcttaagtag Alignment from Spaln_nt2Genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT attgtgttgtttgaagttggtggcagactcttcctgttttgtgccttaagGTCGTCGGTGATCTAATGGTTCAGATCCAGCATATTCAAGACTTTACCCTTAAGCTCCTTCTGGTACGAAAAAGACTGCTTGGCCTGGAACCTGAAGGCCCCATgtgagagaaggcttccctgatcattcatggtgtcctaaatgcttaagtag Alignment from Pairagon GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT attgtgttgtttgaagttggtggcagactcttcctgttttgtgccttaagGTCGTCGGTGATCTAATGGTTCAGATCCAGCATATTCAAGACTTTACCCTTAAGCTCCTTCTGGTACGAAAAAGACTGCTTGGCCTGGAACCTGAAGGCCCCATgtgagagaaggcttccctgatcattcatggtgtcctaaatgcttaagtag Alignment from Exonerate_protein2genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT attgtgttgtttgaagttggtggcagactcttcctgttttgtgccttaagGTCGTCGGTGATCTAATGGTTCAGATCCAGCATATTCAAGACTTTACCCTTAAGCTCCTTCTGGTACGAAAAAGACTGCTTGGCCTGGAACCTGAAGGCCCCATgtgagagaaggcttccctgatcattcatggtgtcctaaatgcttaagtag Alignment from Exonerate_coding2genome attgtgttgtttgaagttggtggcagactcttcctgttttgtgccttaaggtcgtcggtgatctaatggttcagatccagcatattcaagactttacccttaagctccttctggtacgaaaaagactgcttggcctggaacctgaaggccccatgtgagagaaggcttccctgatcattcatggtgtcctaaatgcttaagtag Alignment from GeneWise GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT attgtgttgtttgaagttggtggcagactcttcctgttttgtgccttaagGTCGTCGGTGATCTAATGGTTCAGATCCAGCATATTCAAGACTTTACCCTTAAGCTCCTTCTGGTACGAAAAAGACTGCTTGGCCTGGAACCTGAAGGCCCCATgtgagagaaggcttccctgatcattcatggtgtcctaaatgcttaagtag #### Fam178a_ID9225_6 --> 0 - 2 Original Alignment GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGag gttacatgagagcaagacacattttaagttcccccatttctgcatacaagGAGTATACCCTGAGTGGGATATCCATAAATTCACTAGAGCAAGCTATAAAGAAGATGAAAGACACACAGcggtaatctaaaccatgtgttccttaaatgatttacttgtccccacctttta Alignment from CESAR GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGag gttacatgagagcaagacacattttaagttcccccatttctgcatacaagGAGTATACCCTGAGTGGGATATCCATAAATTCACTAGAGCAAGCTATAAAGAAGATGAAAGACACACAGcggtaatctaaaccatgtgttccttaaatgatttacttgtccccacctttta Alignment from Spaln_aa2Genome GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG gttacatgagagcaagacacattttaagttcccccatttctgcatacaagGAGTATACCCTGAGTGGGATATCCATAAATTCACTAGAGCAAGCTATAAAGAAGATGAAAGACACACAGCGgtaatctaaaccatgtgttccttaaatgatttacttgtccccacctttta Alignment from Spaln_nt2Genome GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG gttacatgagagcaagacacattttaagttcccccatttctgcatacaagGAGTATACCCTGAGTGGGATATCCATAAATTCACTAGAGCAAGCTATAAAGAAGATGAAAGACACACAGCGgtaatctaaaccatgtgttccttaaatgatttacttgtccccacctttta Alignment from Pairagon GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG gttacatgagagcaagacacattttaagttcccccatttctgcatacaagGAGTATACCCTGAGTGGGATATCCATAAATTCACTAGAGCAAGCTATAAAGAAGATGAAAGACACACAGCGgtaatctaaaccatgtgttccttaaatgatttacttgtccccacctttta Alignment from Exonerate_protein2genome GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG gttacatgagagcaagacacattttaagttcccccatttctgcatacaagGAGTATACCCTGAGTGGGATATCCATAAATTCACTAGAGCAAGCTATAAAGAAGATGAAAGACACACAGCGgtaatctaaaccatgtgttccttaaatgatttacttgtccccacctttta Alignment from Exonerate_coding2genome gttacatgagagcaagacacattttaagttcccccatttctgcatacaaggagtataccctgagtgggatatccataaattcactagagcaagctataaagaagatgaaagacacacagcggtaatctaaaccatgtgttccttaaatgatttacttgtccccacctttta Alignment from GeneWise GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG gttacatgagagcaagacacattttaagttcccccatttctgcatacaagGAGTATACCCTGAGTGGGATATCCATAAATTCACTAGAGCAAGCTATAAAGAAGATGAAAGACACACAGCGgtaatctaaaccatgtgttccttaaatgatttacttgtccccacctttta #### Fam178a_ID9235_16 --> 0 - 0 Original Alignment ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ttgtaatcaatttcgagcactggtaaaatacttctgcttgtttcctttagATCCCAGTTCTGCCTCGATATCTTGTGCAGATGAAGCCTTCTGACTTGTTGAAGAAAATGGTTTTGAAAAAAAGAGCTGAACAGCCAAATGAAACTATCGACGAAAGTCTTCATTTGGAGCTGGAGAAGCAGgtacataggacagcaattatagtctgtttcctcatgcaaggtccagtatt Alignment from CESAR ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ttgtaatcaatttcgagcactggtaaaatacttctgcttgtttcctttagATCCCAGTTCTGCCTCGATATCTTGTGCAGATGAAGCCTTCTGACTTGTTGAAGAAAATGGTTTTGAAAAAAAGAGCTGAACAGCCAAATGAAACTATCGACGAAAGTCTTCATTTGGAGCTGGAGAAGCAGgtacataggacagcaattatagtctgtttcctcatgcaaggtccagtatt Alignment from Spaln_aa2Genome ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ttgtaatcaatttcgagcactggtaaaatacttctgcttgtttcctttagATCCCAGTTCTGCCTCGATATCTTGTGCAGATGAAGCCTTCTGACTTGTTGAAGAAAATGGTTTTGAAAAAAAGAGCTGAACAGCCAAATGAAACTATCGACGAAAGTCTTCATTTGGAGCTGGAGAAGCAGgtacataggacagcaattatagtctgtttcctcatgcaaggtccagtatt Alignment from Spaln_nt2Genome ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ttgtaatcaatttcgagcactggtaaaatacttctgcttgtttcctttagATCCCAGTTCTGCCTCGATATCTTGTGCAGATGAAGCCTTCTGACTTGTTGAAGAAAATGGTTTTGAAAAAAAGAGCTGAACAGCCAAATGAAACTATCGACGAAAGTCTTCATTTGGAGCTGGAGAAGCAGgtacataggacagcaattatagtctgtttcctcatgcaaggtccagtatt Alignment from Pairagon ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ttgtaatcaatttcgagcactggtaaaatacttctgcttgtttcctttagATCCCAGTTCTGCCTCGATATCTTGTGCAGATGAAGCCTTCTGACTTGTTGAAGAAAATGGTTTTGAAAAAAAGAGCTGAACAGCCAAATGAAACTATCGACGAAAGTCTTCATTTGGAGCTGGAGAAGCAGgtacataggacagcaattatagtctgtttcctcatgcaaggtccagtatt Alignment from Exonerate_protein2genome ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ttgtaatcaatttcgagcactggtaaaatacttctgcttgtttcctttagATCCCAGTTCTGCCTCGATATCTTGTGCAGATGAAGCCTTCTGACTTGTTGAAGAAAATGGTTTTGAAAAAAAGAGCTGAACAGCCAAATGAAACTATCGACGAAAGTCTTCATTTGGAGCTGGAGAAGCAGgtacataggacagcaattatagtctgtttcctcatgcaaggtccagtatt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ttgtaatcaatttcgagcactggtaaaatacttctgcttgtttcctttagATCCCAGTTCTGCCTCGATATCTTGTGCAGATGAAGCCTTCTGACTTGTTGAAGAAAATGGTTTTGAAAAAAAGAGCTGAACAGCCAAATGAAACTATCGACGAAAGTCTTCATTTGGAGCTGGAGAAGCAGgtacataggacagcaattatagtctgtttcctcatgcaaggtccagtatt #### Fam178a_ID9236_17 --> 0 - 0 Original Alignment GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG tacacattgctcctttaccagctcattgtgacttgcatctccctatacagGCATATTACCTGACCTACATCCTTCTTCATTTAGCTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgtgtaaagattagatttagtttattgtaatggaagtgttgggccgcct Alignment from CESAR GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG tacacattgctcctttaccagctcattgtgacttgcatctccctatacagGCATATTACCTGACCTACATCCTTCTTCATTTAGCTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgtgtaaagattagatttagtttattgtaatggaagtgttgggccgcct Alignment from Spaln_aa2Genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG tacacattgctcctttaccagctcattgtgacttgcatctccctatacagGCATATTACCTGACCTACATCCTTCTTCATTTAGCTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgtgtaaagattagatttagtttattgtaatggaagtgttgggccgcct Alignment from Spaln_nt2Genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG tacacattgctcctttaccagctcattgtgacttgcatctccctatacagGCATATTACCTGACCTACATCCTTCTTCATTTAGCTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgtgtaaagattagatttagtttattgtaatggaagtgttgggccgcct Alignment from Pairagon GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG tacacattgctcctttaccagctcattgtgacttgcatctccctatacagGCATATTACCTGACCTACATCCTTCTTCATTTAGCTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgtgtaaagattagatttagtttattgtaatggaagtgttgggccgcct Alignment from Exonerate_protein2genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG tacacattgctcctttaccagctcattgtgacttgcatctccctatacagGCATATTACCTGACCTACATCCTTCTTCATTTAGCTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgtgtaaagattagatttagtttattgtaatggaagtgttgggccgcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG tacacattgctcctttaccagctcattgtgacttgcatctccctatacagGCATATTACCTGACCTACATCCTTCTTCATTTAGCTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgtgtaaagattagatttagtttattgtaatggaagtgttgggccgcct #### Fam178a_ID9238_19 --> 0 - 0 Original Alignment GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG acaacagtgtgccaatgaatcactcagcctttccccttttccttctctagGTGAAAGACTTAGTTGCCAGAATTCATGGGAAATGGCAGGACATAATTCAGAACTGTCGGCCAACTCAGgtgagtatcacactgattcatggtctcatctttttttaatttcagtgggg Alignment from CESAR GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG acaacagtgtgccaatgaatcactcagcctttccccttttccttctctagGTGAAAGACTTAGTTGCCAGAATTCATGGGAAATGGCAGGACATAATTCAGAACTGTCGGCCAACTCAGgtgagtatcacactgattcatggtctcatctttttttaatttcagtgggg Alignment from Spaln_aa2Genome GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG acaacagtgtgccaatgaatcactcagcctttccccttttccttctctagGTGAAAGACTTAGTTGCCAGAATTCATGGGAAATGGCAGGACATAATTCAGAACTGTCGGCCAACTCAGgtgagtatcacactgattcatggtctcatctttttttaatttcagtgggg Alignment from Spaln_nt2Genome GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG acaacagtgtgccaatgaatcactcagcctttccccttttccttctctagGTGAAAGACTTAGTTGCCAGAATTCATGGGAAATGGCAGGACATAATTCAGAACTGTCGGCCAACTCAGgtgagtatcacactgattcatggtctcatctttttttaatttcagtgggg Alignment from Pairagon GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG acaacagtgtgccaatgaatcactcagcctttccccttttccttctctagGTGAAAGACTTAGTTGCCAGAATTCATGGGAAATGGCAGGACATAATTCAGAACTGTCGGCCAACTCAGgtgagtatcacactgattcatggtctcatctttttttaatttcagtgggg Alignment from Exonerate_protein2genome GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG acaacagtgtgccaatgaatcactcagcctttccccttttccttctctagGTGAAAGACTTAGTTGCCAGAATTCATGGGAAATGGCAGGACATAATTCAGAACTGTCGGCCAACTCAGgtgagtatcacactgattcatggtctcatctttttttaatttcagtgggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG acaacagtgtgccaatgaatcactcagcctttccccttttccttctctagGTGAAAGACTTAGTTGCCAGAATTCATGGGAAATGGCAGGACATAATTCAGAACTGTCGGCCAACTCAGgtgagtatcacactgattcatggtctcatctttttttaatttcagtgggg #### Fam189a2_ID5250_8 --> 0 - 1 Original Alignment GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAg gtgcccttctctcaccccagatgttccttacttggtttttaccttggcagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACAGCAGCAAGCCCCACAGAGCCAGTTTGTACACAGATAAGCCAAggtattgactggcataatatgcataaggagtattatagaagagacatggga Alignment from CESAR GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAg gtgcccttctctcaccccagatgttccttacttggtttttaccttggcagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACAGCAGCAAGCCCCACAGAGCCAGTTTGTACACAGATAAGCCAAggtattgactggcataatatgcataaggagtattatagaagagacatggga Alignment from Spaln_aa2Genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gtgcccttctctcaccccagatgttccttacttggtttttaccttggcagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACAGCAGCAAGCCCCACAGAGCCAGTTTGTACACAGATAAGCCAAGgtattgactggcataatatgcataaggagtattatagaagagacatggga Alignment from Spaln_nt2Genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gtgcccttctctcaccccagatgttccttacttggtttttaccttggcagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACAGCAGCAAGCCCCACAGAGCCAGTTTGTACACAGATAAGCCAAGgtattgactggcataatatgcataaggagtattatagaagagacatggga Alignment from Pairagon GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gtgcccttctctcaccccagatgttccttacttggtttttaccttggcagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACAGCAGCAAGCCCCACAGAGCCAGTTTGTACACAGATAAGCCAAGgtattgactggcataatatgcataaggagtattatagaagagacatggga Alignment from Exonerate_protein2genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gtgcccttctctcaccccagatgttccttacttggtttttaccttggcagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACAGCAGCAAGCCCCACAGAGCCAGTTTGTACACAGATAAGCCAAGgtattgactggcataatatgcataaggagtattatagaagagacatggga Alignment from Exonerate_coding2genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gtgcccttctctcaccccagatgttccttacttggtttttaccttggcagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACAGCAGCAAGCCCCACAGAGCCAGTTTGTACACAGATAAGCCAAGgtattgactggcataatatgcataaggagtattatagaagagacatggga Alignment from GeneWise GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gtgcccttctctcaccccagatgttccttacttggtttttaccttggcagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACAGCAGCAAGCCCCACAGAGCCAGTTTGTACACAGATAAGCCAAGgtattgactggcataatatgcataaggagtattatagaagagacatggga #### Fam189a2_ID5254_6 --> 0 - 2 Original Alignment GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTT---GTGCCACCAGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCag acatgtaatcacttttttttgtatttttaattgttttctgttctttgaagGATGAGTCCAAGATGTCTTCTGAGGATGTGGAAGAACATGGTTGGATCCCTGACCCAGATGACTTACTA---------GGGCCCACTCTTTCATACTCTGCTACTTTT---TCTTGCACCCCTCGCATGAACTGTgcgtatgaggctccaatgtcacctgtactggaaactaccggcaacatgtcaa Alignment from CESAR GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCAGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCag acatgtaatcacttttttttgtatttttaattgttttctgttctttgaagGATGAGTCCAAGATGTCTTCTGAGGATGTGGAAGAACATGGTTGGATCCCTGACCCAGATGACTTACTA------GGGCCCACTCTTTCATACTCTGCTACTTTT---TCTTGCACCCCTCGCATGAACTGTgcgtatgaggctccaatgtcacctgtactggaaactaccggcaacatgtcaa Alignment from Spaln_aa2Genome GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCAGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG acatgtaatcacttttttttgtatttttaattgttttctgttctttgaagGATGAGTCCAAGATGTCTTCTGAGGATGTGGAAGAACATGGTTGGATCCCTGACCCAGATGACTTACTAGGGCCCACT------CTTTCATACTCTGCTACTTTT---TCTTGCACCCCTCGCATGAACTGTGCgtatgaggctccaatgtcacctgtactggaaactaccggcaacatgtcaa Alignment from Spaln_nt2Genome GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCAGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACC acatgtaatcacttttttttgtatttttaattgttttctgttctttgaagGATGAGTCCAAGATGTCTTCTGAGGATGTGGAAGAACATGGTTGGATCCCTGACCCAGATGACTT------ACTAGGGCCCACTCTTTCATACTCTGCTACTTTT---TCTTGCACCCCTCGCATGAACTgtgcgtatgaggctccaatgtcacctgtactggaaactaccggcaacatgtcaa Alignment from Pairagon GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCAGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG acatgtaatcacttttttttgtatttttaattgttttctgttctttgaagGATGAGTCCAAGATGTCTTCTGAGGATGTGGAAGAACATGGTTGGATCCCTGACCCAGATGACTT------ACTAGGGCCCACTCTTTCATACTCTGCTACTTTT---TCTTGCACCCCTCGCATGAACTGTGCgtatgaggctccaatgtcacctgtactggaaactaccggcaacatgtcaa Alignment from Exonerate_protein2genome GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCAGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG acatgtaatcacttttttttgtatttttaattgttttctgttctttgaagGATGAGTCCAAGATGTCTTCTGAGGATGTGGAAGAACATGGTTGGATCCCTGACCCAGATGACTTACTAGGGCCCACT------CTTTCATACTCTGCTACTTTT---TCTTGCACCCCTCGCATGAACTGTGCgtatgaggctccaatgtcacctgtactggaaactaccggcaacatgtcaa Alignment from Exonerate_coding2genome GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCAGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG acatgtaatcacttttttttgtatttttaattgttttctgttctttgaagGATGAGTCCAAGATGTCTTCTGAGGATGTGGAAGAACATGGTTGGATCCCTGACCCAGATGACTTACTAGGGCCCACT------CTTTCATACTCTGCTACTTTT---TCTTGCACCCCTCGCATGAACTGTGCgtatgaggctccaatgtcacctgtactggaaactaccggcaacatgtcaa Alignment from GeneWise GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCAGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG acatgtaatcacttttttttgtatttttaattgttttctgttctttgaagGATGAGTCCAAGATGTCTTCTGAGGATGTGGAAGAACATGGTTGGATCCCTGACCCAGATGACTTACTAGGGCCCACTCTT------TCATACTCTGCTACTTTT---TCTTGCACCCCTCGCATGAACTGTGCgtatgaggctccaatgtcacctgtactggaaactaccggcaacatgtcaa #### Fam189a2_ID5259_2 --> 0 - 0 Original Alignment GTGATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGATACTGCTG gggacttaaaccacggaattttcagagttggactgtttttttgacttcagGTCATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGCTACTGCTAgtgagctaagactcttcttttcagcagcagtggataaggaaaccaaatgg Alignment from CESAR GTGATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGATACTGCTG gggacttaaaccacggaattttcagagttggactgtttttttgacttcagGTCATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGCTACTGCTAgtgagctaagactcttcttttcagcagcagtggataaggaaaccaaatgg Alignment from Spaln_aa2Genome GTGATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGATACTGCTG gggacttaaaccacggaattttcagagttggactgtttttttgacttcagGTCATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGCTACTGCTAgtgagctaagactcttcttttcagcagcagtggataaggaaaccaaatgg Alignment from Spaln_nt2Genome GTGATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGATACTGCTG gggacttaaaccacggaattttcagagttggactgtttttttgacttcagGTCATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGCTACTGCTAgtgagctaagactcttcttttcagcagcagtggataaggaaaccaaatgg Alignment from Pairagon GTGATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGATACTGCTG gggacttaaaccacggaattttcagagttggactgtttttttgacttcagGTCATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGCTACTGCTAgtgagctaagactcttcttttcagcagcagtggataaggaaaccaaatgg Alignment from Exonerate_protein2genome GTGATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGATACTGCTG gggacttaaaccacggaattttcagagttggactgtttttttgacttcagGTCATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGCTACTGCTAgtgagctaagactcttcttttcagcagcagtggataaggaaaccaaatgg Alignment from Exonerate_coding2genome TCGGTGATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGATACTGCTG gggacttaaaccacggaattttcagagttggactgtttttttgacttCAGGTCATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGCTACTGCTAgtgagctaagactcttcttttcagcagcagtggataaggaaaccaaatgg Alignment from GeneWise GTGATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGATACTGCTG gggacttaaaccacggaattttcagagttggactgtttttttgacttcagGTCATACTCTCTGGAATCATTGGATTGACGACTTGGAAAAGGCCCATGCTACTGCTAgtgagctaagactcttcttttcagcagcagtggataaggaaaccaaatgg #### Fam45a_ID13334_2 --> 2 - 0 Original Alignment aaAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcatttggtaatatggttaagcacagtctagaatttgttgttgttttagagAATGACTCTAACGAAGAGGCTCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAACCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACTTGGTTTTACATTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtgatattggtcaagacaaggaaaggctagactacagttcacagggcgaa Alignment from CESAR aaAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcatttggtaatatggttaagcacagtctagaatttgttgttgttttagagAATGACTCTAACGAAGAGGCTCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAACCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACTTGGTTTTACATTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtgatattggtcaagacaaggaaaggctagactacagttcacagggcgaa Alignment from Spaln_aa2Genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcatttggtaatatggttaagcacagtctagaatttgttgttgttttagAGAATGACTCTAACGAAGAGGCTCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAACCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACTTGGTTTTACATTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtgatattggtcaagacaaggaaaggctagactacagttcacagggcgaa Alignment from Spaln_nt2Genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcatttggtaatatggttaagcacagtctagaatttgttgttgttttagAGAATGACTCTAACGAAGAGGCTCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAACCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACTTGGTTTTACATTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtgatattggtcaagacaaggaaaggctagactacagttcacagggcgaa Alignment from Pairagon AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcatttggtaatatggttaagcacagtctagaatttgttgttgttttagAGAATGACTCTAACGAAGAGGCTCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAACCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACTTGGTTTTACATTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtgatattggtcaagacaaggaaaggctagactacagttcacagggcgaa Alignment from Exonerate_protein2genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcatttggtaatatggttaagcacagtctagaatttgttgttgttttagAGAATGACTCTAACGAAGAGGCTCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAACCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACTTGGTTTTACATTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtgatattggtcaagacaaggaaaggctagactacagttcacagggcgaa Alignment from Exonerate_coding2genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcatttggtaatatggttaagcacagtctagaatttgttgttgttttagAGAATGACTCTAACGAAGAGGCTCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAACCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACTTGGTTTTACATTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtgatattggtcaagacaaggaaaggctagactacagttcacagggcgaa Alignment from GeneWise AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcatttggtaatatggttaagcacagtctagaatttgttgttgttttagAGAATGACTCTAACGAAGAGGCTCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAACCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACTTGGTTTTACATTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtgatattggtcaagacaaggaaaggctagactacagttcacagggcgaa #### Fam45a_ID13335_3 --> 0 - 2 Original Alignment GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTag tctggcaacataatcccctttcaaggtgcatccacgcgttccttcaccagGTGACTCATTTTTCAATAGTGCTGACTGCTAAAGACTTCAACCCAGACAAATATGCCGCCTTCACTCGGATCCAGTGTaggtgagtataccttgcaaagaaaataactcttttcagtgtcagtgttcctg Alignment from CESAR GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTag tctggcaacataatcccctttcaaggtgcatccacgcgttccttcaccagGTGACTCATTTTTCAATAGTGCTGACTGCTAAAGACTTCAACCCAGACAAATATGCCGCCTTCACTCGGATCCAGTGTaggtgagtataccttgcaaagaaaataactcttttcagtgtcagtgttcctg Alignment from Spaln_aa2Genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG tctggcaacataatcccctttcaaggtgcatccacgcgttccttcaccagGTGACTCATTTTTCAATAGTGCTGACTGCTAAAGACTTCAACCCAGACAAATATGCCGCCTTCACTCGGATCCAGTGTAGgtgagtataccttgcaaagaaaataactcttttcagtgtcagtgttcctg Alignment from Spaln_nt2Genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG tctggcaacataatcccctttcaaggtgcatccacgcgttccttcaccagGTGACTCATTTTTCAATAGTGCTGACTGCTAAAGACTTCAACCCAGACAAATATGCCGCCTTCACTCGGATCCAGTGTAGgtgagtataccttgcaaagaaaataactcttttcagtgtcagtgttcctg Alignment from Pairagon GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG tctggcaacataatcccctttcaaggtgcatccacgcgttccttcaccagGTGACTCATTTTTCAATAGTGCTGACTGCTAAAGACTTCAACCCAGACAAATATGCCGCCTTCACTCGGATCCAGTGTAGgtgagtataccttgcaaagaaaataactcttttcagtgtcagtgttcctg Alignment from Exonerate_protein2genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG tctggcaacataatcccctttcaaggtgcatccacgcgttccttcaccagGTGACTCATTTTTCAATAGTGCTGACTGCTAAAGACTTCAACCCAGACAAATATGCCGCCTTCACTCGGATCCAGTGTAGgtgagtataccttgcaaagaaaataactcttttcagtgtcagtgttcctg Alignment from Exonerate_coding2genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG tctggcaacataatcccctttcaaggtgcatccacgcgttccttcaccagGTGACTCATTTTTCAATAGTGCTGACTGCTAAAGACTTCAACCCAGACAAATATGCCGCCTTCACTCGGATCCAGTGTAGgtgagtataccttgcaaagaaaataactcttttcagtgtcagtgttcctg Alignment from GeneWise GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG tctggcaacataatcccctttcaaggtgcatccacgcgttccttcaccagGTGACTCATTTTTCAATAGTGCTGACTGCTAAAGACTTCAACCCAGACAAATATGCCGCCTTCACTCGGATCCAGTGTAGgtgagtataccttgcaaagaaaataactcttttcagtgtcagtgttcctg #### Fam45a_ID13338_6 --> 1 - 1 Original Alignment gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg tacaacaattatcctccagcaagtccttatcccttgttttgtgattttagtACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAggtgagcagcaataccccattggtggagttacttgttatttgactttcttg Alignment from CESAR gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg tacaacaattatcctccagcaagtccttatcccttgttttgtgattttagtACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAggtgagcagcaataccccattggtggagttacttgttatttgactttcttg Alignment from Spaln_aa2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattatcctccagcaagtccttatcccttgttttgtgattttagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtgagcagcaataccccattggtggagttacttgttatttgactttcttg Alignment from Spaln_nt2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattatcctccagcaagtccttatcccttgttttgtgattttagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtgagcagcaataccccattggtggagttacttgttatttgactttcttg Alignment from Pairagon GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattatcctccagcaagtccttatcccttgttttgtgattttagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtgagcagcaataccccattggtggagttacttgttatttgactttcttg Alignment from Exonerate_protein2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattatcctccagcaagtccttatcccttgttttgtgattttagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtgagcagcaataccccattggtggagttacttgttatttgactttcttg Alignment from Exonerate_coding2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattatcctccagcaagtccttatcccttgttttgtgattttagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtgagcagcaataccccattggtggagttacttgttatttgactttcttg Alignment from GeneWise GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattatcctccagcaagtccttatcccttgttttgtgattttagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtgagcagcaataccccattggtggagttacttgttatttgactttcttg #### Fam45a_ID13340_8 --> 2 - 0 Original Alignment agGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gggtacattggtagcctggggcattgatgtatcatgtctttatctttcagagGCCATGACTATGGGTAAGCTACATAAAGAGATTGGTCAACTGATTGTACAGTCTGCAGAAGATCCAAAGAAATCGGACAGTCAGGTTATACAAgtaagtttaatcttaatttgctacatgcaatatacaggggctacagtgag Alignment from CESAR agGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gggtacattggtagcctggggcattgatgtatcatgtctttatctttcagagGCCATGACTATGGGTAAGCTACATAAAGAGATTGGTCAACTGATTGTACAGTCTGCAGAAGATCCAAAGAAATCGGACAGTCAGGTTATACAAgtaagtttaatcttaatttgctacatgcaatatacaggggctacagtgag Alignment from Spaln_aa2Genome AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gggtacattggtagcctggggcattgatgtatcatgtctttatctttcagAGGCCATGACTATGGGTAAGCTACATAAAGAGATTGGTCAACTGATTGTACAGTCTGCAGAAGATCCAAAGAAATCGGACAGTCAGGTTATACAAgtaagtttaatcttaatttgctacatgcaatatacaggggctacagtgag Alignment from Spaln_nt2Genome AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gggtacattggtagcctggggcattgatgtatcatgtctttatctttcagAGGCCATGACTATGGGTAAGCTACATAAAGAGATTGGTCAACTGATTGTACAGTCTGCAGAAGATCCAAAGAAATCGGACAGTCAGGTTATACAAgtaagtttaatcttaatttgctacatgcaatatacaggggctacagtgag Alignment from Pairagon AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gggtacattggtagcctggggcattgatgtatcatgtctttatctttcagAGGCCATGACTATGGGTAAGCTACATAAAGAGATTGGTCAACTGATTGTACAGTCTGCAGAAGATCCAAAGAAATCGGACAGTCAGGTTATACAAgtaagtttaatcttaatttgctacatgcaatatacaggggctacagtgag Alignment from Exonerate_protein2genome AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gggtacattggtagcctggggcattgatgtatcatgtctttatctttcagAGGCCATGACTATGGGTAAGCTACATAAAGAGATTGGTCAACTGATTGTACAGTCTGCAGAAGATCCAAAGAAATCGGACAGTCAGGTTATACAAgtaagtttaatcttaatttgctacatgcaatatacaggggctacagtgag Alignment from Exonerate_coding2genome AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gggtacattggtagcctggggcattgatgtatcatgtctttatctttcagAGGCCATGACTATGGGTAAGCTACATAAAGAGATTGGTCAACTGATTGTACAGTCTGCAGAAGATCCAAAGAAATCGGACAGTCAGGTTATACAAgtaagtttaatcttaatttgctacatgcaatatacaggggctacagtgag Alignment from GeneWise AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gggtacattggtagcctggggcattgatgtatcatgtctttatctttcagAGGCCATGACTATGGGTAAGCTACATAAAGAGATTGGTCAACTGATTGTACAGTCTGCAGAAGATCCAAAGAAATCGGACAGTCAGGTTATACAAgtaagtttaatcttaatttgctacatgcaatatacaggggctacagtgag #### Fas_ID6924_5 --> 1 - 1 Original Alignment gTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAa aatagggccgaataaatttgtgtgctacctgaactctctgcctgttctaggTGTGAGCATGGAACTCTTGAGCCATACACAGCAACCAGTAATACAAACTGTAGGAAACAAagtaaggatctcatgtcttcttctttgaccactggagtaaagaggattgtc Alignment from CESAR gTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAa aatagggccgaataaatttgtgtgctacctgaactctctgcctgttctaggTGTGAGCATGGAACTCTTGAGCCATACACAGCAACCAGTAATACAAACTGTAGGAAACAAagtaaggatctcatgtcttcttctttgaccactggagtaaagaggattgtc Alignment from Spaln_aa2Genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA aatagggccgaataaatttgtgtgctacctgaactctctgcctgttctagGTGTGAGCATGGAACTCTTGAGCCATACACAGCAACCAGTAATACAAACTGTAGGAAACAAAgtaaggatctcatgtcttcttctttgaccactggagtaaagaggattgtc Alignment from Spaln_nt2Genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA aatagggccgaataaatttgtgtgctacctgaactctctgcctgttctagGTGTGAGCATGGAACTCTTGAGCCATACACAGCAACCAGTAATACAAACTGTAGGAAACAAAgtaaggatctcatgtcttcttctttgaccactggagtaaagaggattgtc Alignment from Pairagon GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA aatagggccgaataaatttgtgtgctacctgaactctctgcctgttctagGTGTGAGCATGGAACTCTTGAGCCATACACAGCAACCAGTAATACAAACTGTAGGAAACAAAgtaaggatctcatgtcttcttctttgaccactggagtaaagaggattgtc Alignment from Exonerate_protein2genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA aatagggccgaataaatttgtgtgctacctgaactctctgcctgttctagGTGTGAGCATGGAACTCTTGAGCCATACACAGCAACCAGTAATACAAACTGTAGGAAACAAAgtaaggatctcatgtcttcttctttgaccactggagtaaagaggattgtc Alignment from Exonerate_coding2genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA aatagggccgaataaatttgtgtgctacctgaactctctgcctgttctagGTGTGAGCATGGAACTCTTGAGCCATACACAGCAACCAGTAATACAAACTGTAGGAAACAAAgtaaggatctcatgtcttcttctttgaccactggagtaaagaggattgtc Alignment from GeneWise GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA aatagggccgaataaatttgtgtgctacctgaactctctgcctgttctagGTGTGAGCATGGAACTCTTGAGCCATACACAGCAACCAGTAATACAAACTGTAGGAAACAAAgtaaggatctcatgtcttcttctttgaccactggagtaaagaggattgtc #### Fas_ID6927_8 --> 0 - 1 Original Alignment GAAACCATACCAATGAATGCCTCAa actatatacatgaaaacccctcttcctctccttttatttctttggcccagGAAACAATACCT---AAGGCCTTGagtatgttgctacagggattctgcttgcgggaattggctttaagtgtgaat Alignment from CESAR GAAACCATACCAATGAATGCCTCAa actatatacatgaaaacccctcttcctctccttttatttctttggcccagGAAACAATACCT---AAGGCCTTGagtatgttgctacagggattctgcttgcgggaattggctttaagtgtgaat Alignment from Spaln_aa2Genome GAAACCATACCAATGAATGCCTCAA actatatacatgaaaacccctcttcctctccttttatttctttggcccagGAAACAATACCT---AAGGCCTTGAgtatgttgctacagggattctgcttgcgggaattggctttaagtgtgaat Alignment from Spaln_nt2Genome GAAACCATACCAATGAATGCCTCAA actatatacatgaaaacccctcttcctctccttttatttctttggcccagGAAACAATACC---TAAGGCCTTGAgtatgttgctacagggattctgcttgcgggaattggctttaagtgtgaat Alignment from Pairagon actatatacatgaaaacccctcttcctctccttttatttctttggcccaggaaacaatacctaaggccttgagtatgttgctacagggattctgcttgcgggaattggctttaagtgtgaat Alignment from Exonerate_protein2genome actatatacatgaaaacccctcttcctctccttttatttctttggcccaggaaacaatacctaaggccttgagtatgttgctacagggattctgcttgcgggaattggctttaagtgtgaat Alignment from Exonerate_coding2genome actatatacatgaaaacccctcttcctctccttttatttctttggcccaggaaacaatacctaaggccttgagtatgttgctacagggattctgcttgcgggaattggctttaagtgtgaat Alignment from GeneWise actatatacatgaaaacccctcttcctctccttttatttctttggcccaggaaacaatacctaaggccttgagtatgttgctacagggattctgcttgcgggaattggctttaagtgtgaat #### Fau_ID1402_2 --> 0 - 1 Original Alignment GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg ttcacttactcactacataggaccagatccttttcacccatccctcccagGATCATGTTGCATCACTTGAAGGCATGGCTCCTGAGGATCAAGCTGTACTCTTAGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAATAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTggtaagaaatactctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from CESAR GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg ttcacttactcactacataggaccagatccttttcacccatccctcccagGATCATGTTGCATCACTTGAAGGCATGGCTCCTGAGGATCAAGCTGTACTCTTAGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAATAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTggtaagaaatactctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from Spaln_aa2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactcactacataggaccagatccttttcacccatccctcccagGATCATGTTGCATCACTTGAAGGCATGGCTCCTGAGGATCAAGCTGTACTCTTAGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAATAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtaagaaatactctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from Spaln_nt2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactcactacataggaccagatccttttcacccatccctcccagGATCATGTTGCATCACTTGAAGGCATGGCTCCTGAGGATCAAGCTGTACTCTTAGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAATAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtaagaaatactctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from Pairagon GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactcactacataggaccagatccttttcacccatccctcccagGATCATGTTGCATCACTTGAAGGCATGGCTCCTGAGGATCAAGCTGTACTCTTAGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAATAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtaagaaatactctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from Exonerate_protein2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactcactacataggaccagatccttttcacccatccctcccagGATCATGTTGCATCACTTGAAGGCATGGCTCCTGAGGATCAAGCTGTACTCTTAGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAATAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtaagaaatactctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from Exonerate_coding2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactcactacataggaccagatccttttcacccatccctcccagGATCATGTTGCATCACTTGAAGGCATGGCTCCTGAGGATCAAGCTGTACTCTTAGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAATAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtaagaaatactctgtgagctatcacaaggtaactgccagtgcatgtata Alignment from GeneWise GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG ttcacttactcactacataggaccagatccttttcacccatccctcccagGATCATGTTGCATCACTTGAAGGCATGGCTCCTGAGGATCAAGCTGTACTCTTAGCAGGTTCCCCACTGGAAGATGATGCAACCCTGGGCCAGTGTGGTGTAATAGCACCAACTACTCTAGAGGTGGCAGGTCGCATGCTTGGTGgtaagaaatactctgtgagctatcacaaggtaactgccagtgcatgtata #### Fau_ID1403_3 --> 2 - 0 Original Alignment gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG tttcaagaggagaagaggagttcgactaattacttttaatctttaaacaggcATAGTTCATGGCTCCTTGGCCCGGGCTGGAAAAGTCAGAGGCCAGACTCCCAAAgtaaggagcaggggtaaatcttcctttaagtcagaatgatcattgacagc Alignment from CESAR gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG tttcaagaggagaagaggagttcgactaattacttttaatctttaaacaggcATAGTTCATGGCTCCTTGGCCCGGGCTGGAAAAGTCAGAGGCCAGACTCCCAAAgtaaggagcaggggtaaatcttcctttaagtcagaatgatcattgacagc Alignment from Spaln_aa2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG tttcaagaggagaagaggagttcgactaattacttttaatctttaaacagGCATAGTTCATGGCTCCTTGGCCCGGGCTGGAAAAGTCAGAGGCCAGACTCCCAAAgtaaggagcaggggtaaatcttcctttaagtcagaatgatcattgacagc Alignment from Spaln_nt2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG tttcaagaggagaagaggagttcgactaattacttttaatctttaaacagGCATAGTTCATGGCTCCTTGGCCCGGGCTGGAAAAGTCAGAGGCCAGACTCCCAAAgtaaggagcaggggtaaatcttcctttaagtcagaatgatcattgacagc Alignment from Pairagon GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG tttcaagaggagaagaggagttcgactaattacttttaatctttaaacagGCATAGTTCATGGCTCCTTGGCCCGGGCTGGAAAAGTCAGAGGCCAGACTCCCAAAgtaaggagcaggggtaaatcttcctttaagtcagaatgatcattgacagc Alignment from Exonerate_protein2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG tttcaagaggagaagaggagttcgactaattacttttaatctttaaacagGCATAGTTCATGGCTCCTTGGCCCGGGCTGGAAAAGTCAGAGGCCAGACTCCCAAAgtaaggagcaggggtaaatcttcctttaagtcagaatgatcattgacagc Alignment from Exonerate_coding2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG tttcaagaggagaagaggagttcgactaattacttttaatctttaaacagGCATAGTTCATGGCTCCTTGGCCCGGGCTGGAAAAGTCAGAGGCCAGACTCCCAAAgtaaggagcaggggtaaatcttcctttaagtcagaatgatcattgacagc Alignment from GeneWise GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG tttcaagaggagaagaggagttcgactaattacttttaatctttaaacagGCATAGTTCATGGCTCCTTGGCCCGGGCTGGAAAAGTCAGAGGCCAGACTCCCAAAgtaaggagcaggggtaaatcttcctttaagtcagaatgatcattgacagc #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggtagggagccaacatccgtcttgttgcttttcttttcagGGAGGCCCTGGTGGGGGGCCTGCGCTTGGCAGGGAGCCGACCTCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtgagcagttagagagatggggaagattcctccattttaggccctgggtt Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggtagggagccaacatccgtcttgttgcttttcttttcagGGAGGCCCTGGTGGGGGGCCTGCGCTTGGCAGGGAGCCGACCTCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtgagcagttagagagatggggaagattcctccattttaggccctgggtt Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggtagggagccaacatccgtcttgttgcttttcttttcagGGAGGCCCTGGTGGGGGGCCTGCGCTTGGCAGGGAGCCGACCTCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtgagcagttagagagatggggaagattcctccattttaggccctgggtt Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggtagggagccaacatccgtcttgttgcttttcttttcagGGAGGCCCTGGTGGGGGGCCTGCGCTTGGCAGGGAGCCGACCTCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtgagcagttagagagatggggaagattcctccattttaggccctgggtt Alignment from Pairagon CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggtagggagccaacatccgtcttgttgcttttcttttCAGGGAGGCCCTGGTGGGGGGCCTGCGCTTGGCAGGGAGCCGACCTCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtgagcagttagagagatggggaagattcctccattttaggccctgggtt Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggtagggagccaacatccgtcttgttgcttttcttttcagGGAGGCCCTGGTGGGGGGCCTGCGCTTGGCAGGGAGCCGACCTCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtgagcagttagagagatggggaagattcctccattttaggccctgggtt Alignment from Exonerate_coding2genome TGCCTCCAAGCCCAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggtagggagccaacatccgtcttgtTGCTTTTCTTTTCAGGGAGGCCCTGGTGGGGGGCCTGCGCTTGGCAGGGAGCCGACCTCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtgagcagttagagagatggggaagattcctccattttaggccctgggtt Alignment from GeneWise TGCCTCCAAGCCCAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggtagggagccaacatccgtcttgtTGCTTTTCTTTTCAGGGAGGCCCTGGTGGGGGGCCTGCGCTTGGCAGGGAGCCGACCTCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtgagcagttagagagatggggaagattcctccattttaggccctgggtt #### Fibp_ID1006_3 --> 1 - 0 Original Alignment gTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG cttgctgtccccaccagtgtctgaatctcgctcaactcttgcccatctaggTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGATCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaggtaaaccccttgatctgacacattgggcccactcatttgtcaagtg Alignment from CESAR gTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG cttgctgtccccaccagtgtctgaatctcgctcaactcttgcccatctaggTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGATCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaggtaaaccccttgatctgacacattgggcccactcatttgtcaagtg Alignment from Spaln_aa2Genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG cttgctgtccccaccagtgtctgaatctcgctcaactcttgcccatctagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGATCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaggtaaaccccttgatctgacacattgggcccactcatttgtcaagtg Alignment from Spaln_nt2Genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG cttgctgtccccaccagtgtctgaatctcgctcaactcttgcccatctagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGATCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaggtaaaccccttgatctgacacattgggcccactcatttgtcaagtg Alignment from Pairagon GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG cttgctgtccccaccagtgtctgaatctcgctcaactcttgcccatctagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGATCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaggtaaaccccttgatctgacacattgggcccactcatttgtcaagtg Alignment from Exonerate_protein2genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG cttgctgtccccaccagtgtctgaatctcgctcaactcttgcccatctagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGATCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaggtaaaccccttgatctgacacattgggcccactcatttgtcaagtg Alignment from Exonerate_coding2genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG cttgctgtccccaccagtgtctgaatctcgctcaactcttgcccatctagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGATCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaggtaaaccccttgatctgacacattgggcccactcatttgtcaagtg Alignment from GeneWise GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG cttgctgtccccaccagtgtctgaatctcgctcaactcttgcccatctagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGATCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaggtaaaccccttgatctgacacattgggcccactcatttgtcaagtg #### Fra10ac1_ID7558_11 --> 2 - 1 Original Alignment gaCATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACa aatgcccatcacatgtgagagagtgggcaactcaactctgcttctaacaggaCATTCATCCTCAAAGAAGTCAGAAGACTCTAGGAACagtgaggggactattccgagctgatgtgtagagtttgctcctcctaggatc Alignment from CESAR gaCATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACa aatgcccatcacatgtgagagagtgggcaactcaactctgcttctaacaggaCATTCATCCTCAAAGAAGTCAGAAGACTCTAGGAACagtgaggggactattccgagctgatgtgtagagtttgctcctcctaggatc Alignment from Spaln_aa2Genome GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA aatgcccatcacatgtgagagagtgggcaactcaactctgcttctaacagGACATTCATCCTCAAAGAAGTCAGAAGACTCTAGGAACAgtgaggggactattccgagctgatgtgtagagtttgctcctcctaggatc Alignment from Spaln_nt2Genome GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA aatgcccatcacatgtgagagagtgggcaactcaactctgcttctaacagGACATTCATCCTCAAAGAAGTCAGAAGACTCTAGGAACAgtgaggggactattccgagctgatgtgtagagtttgctcctcctaggatc Alignment from Pairagon GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA aatgcccatcacatgtgagagagtgggcaactcaactctgcttctaacagGACATTCATCCTCAAAGAAGTCAGAAGACTCTAGGAACAgtgaggggactattccgagctgatgtgtagagtttgctcctcctaggatc Alignment from Exonerate_protein2genome GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA aatgcccatcacatgtgagagagtgggcaactcaactctgcttctaacagGACATTCATCCTCAAAGAAGTCAGAAGACTCTAGGAACAgtgaggggactattccgagctgatgtgtagagtttgctcctcctaggatc Alignment from Exonerate_coding2genome GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA aatgcccatcacatgtgagagagtgggcaactcaactctgcttctaacagGACATTCATCCTCAAAGAAGTCAGAAGACTCTAGGAACAgtgaggggactattccgagctgatgtgtagagtttgctcctcctaggatc Alignment from GeneWise GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA aatgcccatcacatgtgagagagtgggcaactcaactctgcttctaacagGACATTCATCCTCAAAGAAGTCAGAAGACTCTAGGAACAgtgaggggactattccgagctgatgtgtagagtttgctcctcctaggatc #### Fra10ac1_ID7562_7 --> 0 - 1 Original Alignment TTTGGATTTAGGTGGCGAATAGAAAAAGAAGTAATTTCAGGAAAAg actgaattcatcatggctttctatggatcttgcctttttggcctttgtagTTTGGATTTAGGTGGCGGGCAGAAAAGGAAGTAATCTCAGGAAAAggtaaatcccacttactccaggaagggtgtggtaaagaatacactttccaa Alignment from CESAR TTTGGATTTAGGTGGCGAATAGAAAAAGAAGTAATTTCAGGAAAAg actgaattcatcatggctttctatggatcttgcctttttggcctttgtagTTTGGATTTAGGTGGCGGGCAGAAAAGGAAGTAATCTCAGGAAAAggtaaatcccacttactccaggaagggtgtggtaaagaatacactttccaa Alignment from Spaln_aa2Genome TTTGGATTTAGGTGGCGAATAGAAAAAGAAGTAATTTCAGGAAAAG actgaattcatcatggctttctatggatcttgcctttttggcctttgtagTTTGGATTTAGGTGGCGGGCAGAAAAGGAAGTAATCTCAGGAAAAGgtaaatcccacttactccaggaagggtgtggtaaagaatacactttccaa Alignment from Spaln_nt2Genome TTTGGATTTAGGTGGCGAATAGAAAAAGAAGTAATTTCAGGAAAAG actgaattcatcatggctttctatggatcttgcctttttggcctttgtagTTTGGATTTAGGTGGCGGGCAGAAAAGGAAGTAATCTCAGGAAAAGgtaaatcccacttactccaggaagggtgtggtaaagaatacactttccaa Alignment from Pairagon TTTGGATTTAGGTGGCGAATAGAAAAAGAAGTAATTTCAGGAAAAG actgaattcatcatggctttctatggatcttgcctttttggcctttgtagTTTGGATTTAGGTGGCGGGCAGAAAAGGAAGTAATCTCAGGAAAAGgtaaatcccacttactccaggaagggtgtggtaaagaatacactttccaa Alignment from Exonerate_protein2genome TTTGGATTTAGGTGGCGAATAGAAAAAGAAGTAATTTCAGGAAAAG actgaattcatcatggctttctatggatcttgcctttttggcctttgtagTTTGGATTTAGGTGGCGGGCAGAAAAGGAAGTAATCTCAGGAAAAGgtaaatcccacttactccaggaagggtgtggtaaagaatacactttccaa Alignment from Exonerate_coding2genome TTTGGATTTAGGTGGCGAATAGAAAAAGAAGTAATTTCAGGAAAAG actgaattcatcatggctttctatggatcttgcctttttggcctttgtagTTTGGATTTAGGTGGCGGGCAGAAAAGGAAGTAATCTCAGGAAAAGgtaaatcccacttactccaggaagggtgtggtaaagaatacactttccaa Alignment from GeneWise TTTGGATTTAGGTGGCGAATAGAAAAAGAAGTAATTTCAGGAAAAG actgaattcatcatggctttctatggatcttgcctttttggcctttgtagTTTGGATTTAGGTGGCGGGCAGAAAAGGAAGTAATCTCAGGAAAAGgtaaatcccacttactccaggaagggtgtggtaaagaatacactttccaa #### Fra10ac1_ID7568_2 --> 1 - 2 Original Alignment gACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACag ccatccctctttggaaggacacccagatttctacccaactcccgacccaggACAGTAGAAGATGAGTTGCTGCTTACAAAACCATTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACaggtaagtcatttttccctaaccatagatgaagttcatacctatttttaccc Alignment from CESAR gACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACag ccatccctctttggaaggacacccagatttctacccaactcccgacccaggACAGTAGAAGATGAGTTGCTGCTTACAAAACCATTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACaggtaagtcatttttccctaaccatagatgaagttcatacctatttttaccc Alignment from Spaln_aa2Genome GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG ccatccctctttggaaggacacccagatttctacccaactcccgacccagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCATTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtaagtcatttttccctaaccatagatgaagttcatacctatttttaccc Alignment from Spaln_nt2Genome GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG ccatccctctttggaaggacacccagatttctacccaactcccgacccagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCATTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtaagtcatttttccctaaccatagatgaagttcatacctatttttaccc Alignment from Pairagon GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG ccatccctctttggaaggacacccagatttctacccaactcccgacccagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCATTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtaagtcatttttccctaaccatagatgaagttcatacctatttttaccc Alignment from Exonerate_protein2genome GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG ccatccctctttggaaggacacccagatttctacccaactcccgacccagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCATTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtaagtcatttttccctaaccatagatgaagttcatacctatttttaccc Alignment from Exonerate_coding2genome GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG ccatccctctttggaaggacacccagatttctacccaactcccgacccagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCATTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtaagtcatttttccctaaccatagatgaagttcatacctatttttaccc Alignment from GeneWise GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG ccatccctctttggaaggacacccagatttctacccaactcccgacccagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCATTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtaagtcatttttccctaaccatagatgaagttcatacctatttttaccc #### Frmd8_ID1279_9 --> 0 - 1 Original Alignment GCTGAGCTGATGAGCGGCCTCATTGAGTACTGCATTGAGCTGAGCCAGGCTGCCGAGCCTACTCTTTCCCAGGAGAGTGCATCCGGCCCTCACGAAGCTCCCAGCCCCTCTCCACCTCCCACCCAGCGCCCCAAGCTGCGAAGGCAGGGTAGCGTGGTGTGTAGCCGGATTCAGCATCTCTCTACCATTGACTATGTGGAAGACg atgattcttggcagagcaaccagccaccaactgttttcttcctccttcagGCTGAGCAAATGAGTGGACTTATTGAGTATTGCATTCAATTGAGCCAACCTGCAGAGCCGATATTGTCTCGGGAGAGTGCATCTGGTCCACATGAAGCTCCCAGCCCCTCACCACCACCCACCCAACGCCCAAAAGTACGAAGGCAGGGGAGTGTGGTCTGTAGTCGGGTTCAGCATCTTTTCCCCATTGACTATGTGGAAGACagtgagtgggaaaatggtataagttggaaaaaactctgcagggtattacct Alignment from CESAR GCTGAGCTGATGAGCGGCCTCATTGAGTACTGCATTGAGCTGAGCCAGGCTGCCGAGCCTACTCTTTCCCAGGAGAGTGCATCCGGCCCTCACGAAGCTCCCAGCCCCTCTCCACCTCCCACCCAGCGCCCCAAGCTGCGAAGGCAGGGTAGCGTGGTGTGTAGCCGGATTCAGCATCTCTCTACCATTGACTATGTGGAAGACg atgattcttggcagagcaaccagccaccaactgttttcttcctccttcagGCTGAGCAAATGAGTGGACTTATTGAGTATTGCATTCAATTGAGCCAACCTGCAGAGCCGATATTGTCTCGGGAGAGTGCATCTGGTCCACATGAAGCTCCCAGCCCCTCACCACCACCCACCCAACGCCCAAAAGTACGAAGGCAGGGGAGTGTGGTCTGTAGTCGGGTTCAGCATCTTTTCCCCATTGACTATGTGGAAGACagtgagtgggaaaatggtataagttggaaaaaactctgcagggtattacct Alignment from Spaln_aa2Genome GCTGAGCTGATGAGCGGCCTCATTGAGTACTGCATTGAGCTGAGCCAGGCTGCCGAGCCTACTCTTTCCCAGGAGAGTGCATCCGGCCCTCACGAAGCTCCCAGCCCCTCTCCACCTCCCACCCAGCGCCCCAAGCTGCGAAGGCAGGGTAGCGTGGTGTGTAGCCGGATTCAGCATCTCTCTACCATTGACTATGTGGAAGACG atgattcttggcagagcaaccagccaccaactgttttcttcctccttcagGCTGAGCAAATGAGTGGACTTATTGAGTATTGCATTCAATTGAGCCAACCTGCAGAGCCGATATTGTCTCGGGAGAGTGCATCTGGTCCACATGAAGCTCCCAGCCCCTCACCACCACCCACCCAACGCCCAAAAGTACGAAGGCAGGGGAGTGTGGTCTGTAGTCGGGTTCAGCATCTTTTCCCCATTGACTATGTGGAAGACAgtgagtgggaaaatggtataagttggaaaaaactctgcagggtattacct Alignment from Spaln_nt2Genome GCTGAGCTGATGAGCGGCCTCATTGAGTACTGCATTGAGCTGAGCCAGGCTGCCGAGCCTACTCTTTCCCAGGAGAGTGCATCCGGCCCTCACGAAGCTCCCAGCCCCTCTCCACCTCCCACCCAGCGCCCCAAGCTGCGAAGGCAGGGTAGCGTGGTGTGTAGCCGGATTCAGCATCTCTCTACCATTGACTATGTGGAAGACG atgattcttggcagagcaaccagccaccaactgttttcttcctccttcagGCTGAGCAAATGAGTGGACTTATTGAGTATTGCATTCAATTGAGCCAACCTGCAGAGCCGATATTGTCTCGGGAGAGTGCATCTGGTCCACATGAAGCTCCCAGCCCCTCACCACCACCCACCCAACGCCCAAAAGTACGAAGGCAGGGGAGTGTGGTCTGTAGTCGGGTTCAGCATCTTTTCCCCATTGACTATGTGGAAGACAgtgagtgggaaaatggtataagttggaaaaaactctgcagggtattacct Alignment from Pairagon GCTGAGCTGATGAGCGGCCTCATTGAGTACTGCATTGAGCTGAGCCAGGCTGCCGAGCCTACTCTTTCCCAGGAGAGTGCATCCGGCCCTCACGAAGCTCCCAGCCCCTCTCCACCTCCCACCCAGCGCCCCAAGCTGCGAAGGCAGGGTAGCGTGGTGTGTAGCCGGATTCAGCATCTCTCTACCATTGACTATGTGGAAGACG atgattcttggcagagcaaccagccaccaactgttttcttcctccttcagGCTGAGCAAATGAGTGGACTTATTGAGTATTGCATTCAATTGAGCCAACCTGCAGAGCCGATATTGTCTCGGGAGAGTGCATCTGGTCCACATGAAGCTCCCAGCCCCTCACCACCACCCACCCAACGCCCAAAAGTACGAAGGCAGGGGAGTGTGGTCTGTAGTCGGGTTCAGCATCTTTTCCCCATTGACTATGTGGAAGACAgtgagtgggaaaatggtataagttggaaaaaactctgcagggtattacct Alignment from Exonerate_protein2genome GCTGAGCTGATGAGCGGCCTCATTGAGTACTGCATTGAGCTGAGCCAGGCTGCCGAGCCTACTCTTTCCCAGGAGAGTGCATCCGGCCCTCACGAAGCTCCCAGCCCCTCTCCACCTCCCACCCAGCGCCCCAAGCTGCGAAGGCAGGGTAGCGTGGTGTGTAGCCGGATTCAGCATCTCTCTACCATTGACTATGTGGAAGACG atgattcttggcagagcaaccagccaccaactgttttcttcctccttcagGCTGAGCAAATGAGTGGACTTATTGAGTATTGCATTCAATTGAGCCAACCTGCAGAGCCGATATTGTCTCGGGAGAGTGCATCTGGTCCACATGAAGCTCCCAGCCCCTCACCACCACCCACCCAACGCCCAAAAGTACGAAGGCAGGGGAGTGTGGTCTGTAGTCGGGTTCAGCATCTTTTCCCCATTGACTATGTGGAAGACAgtgagtgggaaaatggtataagttggaaaaaactctgcagggtattacct Alignment from Exonerate_coding2genome GCTGAGCTGATGAGCGGCCTCATTGAGTACTGCATTGAGCTGAGCCAGGCTGCCGAGCCTACTCTTTCCCAGGAGAGTGCATCCGGCCCTCACGAAGCTCCCAGCCCCTCTCCACCTCCCACCCAGCGCCCCAAGCTGCGAAGGCAGGGTAGCGTGGTGTGTAGCCGGATTCAGCATCTCTCTACCATTGACTATGTGGAAGACG atgattcttggcagagcaaccagccaccaactgttttcttcctccttcagGCTGAGCAAATGAGTGGACTTATTGAGTATTGCATTCAATTGAGCCAACCTGCAGAGCCGATATTGTCTCGGGAGAGTGCATCTGGTCCACATGAAGCTCCCAGCCCCTCACCACCACCCACCCAACGCCCAAAAGTACGAAGGCAGGGGAGTGTGGTCTGTAGTCGGGTTCAGCATCTTTTCCCCATTGACTATGTGGAAGACAgtgagtgggaaaatggtataagttggaaaaaactctgcagggtattacct Alignment from GeneWise GCTGAGCTGATGAGCGGCCTCATTGAGTACTGCATTGAGCTGAGCCAGGCTGCCGAGCCTACTCTTTCCCAGGAGAGTGCATCCGGCCCTCACGAAGCTCCCAGCCCCTCTCCACCTCCCACCCAGCGCCCCAAGCTGCGAAGGCAGGGTAGCGTGGTGTGTAGCCGGATTCAGCATCTCTCTACCATTGACTATGTGGAAGACG atgattcttggcagagcaaccagccaccaactgttttcttcctccttcagGCTGAGCAAATGAGTGGACTTATTGAGTATTGCATTCAATTGAGCCAACCTGCAGAGCCGATATTGTCTCGGGAGAGTGCATCTGGTCCACATGAAGCTCCCAGCCCCTCACCACCACCCACCCAACGCCCAAAAGTACGAAGGCAGGGGAGTGTGGTCTGTAGTCGGGTTCAGCATCTTTTCCCCATTGACTATGTGGAAGACAgtgagtgggaaaatggtataagttggaaaaaactctgcagggtattacct #### Frmd8_ID1282_6 --> 1 - 2 Original Alignment aGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACgg tcataatctcaaggtgcatcagaggcttctgtccctcctgtgccctgcaggGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTCGCTGCTTTCCAAGGACGGGGTACAAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCTTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAACATAAGGCCACCTTGGGCTATCATTACCGAGCATATCTCCTTAAGTGCCATGGGCTGCCATTCTATgggtgagcgagtccccttagtacttttcaggtccctagcacaggtccatgtg Alignment from CESAR aGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACgg tcataatctcaaggtgcatcagaggcttctgtccctcctgtgccctgcaggGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTCGCTGCTTTCCAAGGACGGGGTACAAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCTTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAACATAAGGCCACCTTGGGCTATCATTACCGAGCATATCTCCTTAAGTGCCATGGGCTGCCATTCTATgggtgagcgagtccccttagtacttttcaggtccctagcacaggtccatgtg Alignment from Spaln_aa2Genome AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG tcataatctcaaggtgcatcagaggcttctgtccctcctgtgccctgcagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTCGCTGCTTTCCAAGGACGGGGTACAAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCTTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAACATAAGGCCACCTTGGGCTATCATTACCGAGCATATCTCCTTAAGTGCCATGGGCTGCCATTCTATGGgtgagcgagtccccttagtacttttcaggtccctagcacaggtccatgtg Alignment from Spaln_nt2Genome AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG tcataatctcaaggtgcatcagaggcttctgtccctcctgtgccctgcagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTCGCTGCTTTCCAAGGACGGGGTACAAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCTTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAACATAAGGCCACCTTGGGCTATCATTACCGAGCATATCTCCTTAAGTGCCATGGGCTGCCATTCTATGGgtgagcgagtccccttagtacttttcaggtccctagcacaggtccatgtg Alignment from Pairagon AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG tcataatctcaaggtgcatcagaggcttctgtccctcctgtgccctgcagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTCGCTGCTTTCCAAGGACGGGGTACAAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCTTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAACATAAGGCCACCTTGGGCTATCATTACCGAGCATATCTCCTTAAGTGCCATGGGCTGCCATTCTATGGgtgagcgagtccccttagtacttttcaggtccctagcacaggtccatgtg Alignment from Exonerate_protein2genome AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG tcataatctcaaggtgcatcagaggcttctgtccctcctgtgccctgcagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTCGCTGCTTTCCAAGGACGGGGTACAAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCTTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAACATAAGGCCACCTTGGGCTATCATTACCGAGCATATCTCCTTAAGTGCCATGGGCTGCCATTCTATGGgtgagcgagtccccttagtacttttcaggtccctagcacaggtccatgtg Alignment from Exonerate_coding2genome AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG tcataatctcaaggtgcatcagaggcttctgtccctcctgtgccctgcagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTCGCTGCTTTCCAAGGACGGGGTACAAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCTTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAACATAAGGCCACCTTGGGCTATCATTACCGAGCATATCTCCTTAAGTGCCATGGGCTGCCATTCTATGGgtgagcgagtccccttagtacttttcaggtccctagcacaggtccatgtg Alignment from GeneWise AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG tcataatctcaaggtgcatcagaggcttctgtccctcctgtgccctgcagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTCGCTGCTTTCCAAGGACGGGGTACAAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCTTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAACATAAGGCCACCTTGGGCTATCATTACCGAGCATATCTCCTTAAGTGCCATGGGCTGCCATTCTATGGgtgagcgagtccccttagtacttttcaggtccctagcacaggtccatgtg #### Frmd8_ID1286_2 --> 2 - 1 Original Alignment caGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGg tgtggtctcattgaccgtggagtagctcttaaccttaccactgcttacagcaGCTGATGTTTTGGTGTATCTGGCAGACGATACAGTGGTTCCCTTGGCTGTGGATAATCTTTCTTCAACCAGTGCCCATGAGTTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTCGCACTCTGGCTAGTTCCTCCTCTCTTAggtaagttactctagggacgcgtctagaagagaggacagacatcatcgact Alignment from CESAR caGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGg tgtggtctcattgaccgtggagtagctcttaaccttaccactgcttacagcaGCTGATGTTTTGGTGTATCTGGCAGACGATACAGTGGTTCCCTTGGCTGTGGATAATCTTTCTTCAACCAGTGCCCATGAGTTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTCGCACTCTGGCTAGTTCCTCCTCTCTTAggtaagttactctagggacgcgtctagaagagaggacagacatcatcgact Alignment from Spaln_aa2Genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG tgtggtctcattgaccgtggagtagctcttaaccttaccactgcttacagCAGCTGATGTTTTGGTGTATCTGGCAGACGATACAGTGGTTCCCTTGGCTGTGGATAATCTTTCTTCAACCAGTGCCCATGAGTTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTCGCACTCTGGCTAGTTCCTCCTCTCTTAGgtaagttactctagggacgcgtctagaagagaggacagacatcatcgact Alignment from Spaln_nt2Genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG tgtggtctcattgaccgtggagtagctcttaaccttaccactgcttacagCAGCTGATGTTTTGGTGTATCTGGCAGACGATACAGTGGTTCCCTTGGCTGTGGATAATCTTTCTTCAACCAGTGCCCATGAGTTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTCGCACTCTGGCTAGTTCCTCCTCTCTTAGgtaagttactctagggacgcgtctagaagagaggacagacatcatcgact Alignment from Pairagon CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG tgtggtctcattgaccgtggagtagctcttaaccttaccactgcttacagCAGCTGATGTTTTGGTGTATCTGGCAGACGATACAGTGGTTCCCTTGGCTGTGGATAATCTTTCTTCAACCAGTGCCCATGAGTTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTCGCACTCTGGCTAGTTCCTCCTCTCTTAGgtaagttactctagggacgcgtctagaagagaggacagacatcatcgact Alignment from Exonerate_protein2genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG tgtggtctcattgaccgtggagtagctcttaaccttaccactgcttacagCAGCTGATGTTTTGGTGTATCTGGCAGACGATACAGTGGTTCCCTTGGCTGTGGATAATCTTTCTTCAACCAGTGCCCATGAGTTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTCGCACTCTGGCTAGTTCCTCCTCTCTTAGgtaagttactctagggacgcgtctagaagagaggacagacatcatcgact Alignment from Exonerate_coding2genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG tgtggtctcattgaccgtggagtagctcttaaccttaccactgcttacagCAGCTGATGTTTTGGTGTATCTGGCAGACGATACAGTGGTTCCCTTGGCTGTGGATAATCTTTCTTCAACCAGTGCCCATGAGTTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTCGCACTCTGGCTAGTTCCTCCTCTCTTAGgtaagttactctagggacgcgtctagaagagaggacagacatcatcgact Alignment from GeneWise CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG tgtggtctcattgaccgtggagtagctcttaaccttaccactgcttacagCAGCTGATGTTTTGGTGTATCTGGCAGACGATACAGTGGTTCCCTTGGCTGTGGATAATCTTTCTTCAACCAGTGCCCATGAGTTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTCGCACTCTGGCTAGTTCCTCCTCTCTTAGgtaagttactctagggacgcgtctagaagagaggacagacatcatcgact #### Ganab_ID2464_3 --> 1 - 0 Original Alignment aCGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG gccatccggagggctttcattgttgacttttgcatttctgccccttttaggAAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACACTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtctgtcagttgacacatcatttactgtaggtgacaattagtagttatga Alignment from CESAR aCGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG gccatccggagggctttcattgttgacttttgcatttctgccccttttaggAAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACACTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtctgtcagttgacacatcatttactgtaggtgacaattagtagttatga Alignment from Spaln_aa2Genome ACGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG gccatccggagggctttcattgttgacttttgcatttctgccccttttagGAAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACACTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtctgtcagttgacacatcatttactgtaggtgacaattagtagttatga Alignment from Spaln_nt2Genome ACGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG gccatccggagggctttcattgttgacttttgcatttctgccccttttagGAAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACACTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtctgtcagttgacacatcatttactgtaggtgacaattagtagttatga Alignment from Pairagon ACGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG gccatccggagggctttcattgttgacttttgcatttctgccccttttagGAAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACACTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtctgtcagttgacacatcatttactgtaggtgacaattagtagttatga Alignment from Exonerate_protein2genome ACGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG gccatccggagggctttcattgttgacttttgcatttctgccccttttagGAAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACACTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtctgtcagttgacacatcatttactgtaggtgacaattagtagttatga Alignment from Exonerate_coding2genome gccatccggagggctttcattgttgacttttgcatttctgccccttttaggaaacagcgcagcattcaatctggcctctccccctatcgggacttacttgatacactacagcttggccctgatgcccttacagtccaactaattcatgaagtcactaaagtctgtcagttgacacatcatttactgtaggtgacaattagtagttatga Alignment from GeneWise ACGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG gccatccggagggctttcattgttgacttttgcatttctgccccttttagGAAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACACTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtctgtcagttgacacatcatttactgtaggtgacaattagtagttatga #### Ganab_ID2475_14 --> 2 - 0 Original Alignment Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AggtaagatccatgaccaatgaagttttgcctttctcctttccattgcaggcTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from CESAR Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AggtaacttccatgaccaatgaagttttgcctttctcctttccattgcaggcTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from Spaln_aa2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from Spaln_nt2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from Pairagon AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from Exonerate_protein2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from Exonerate_coding2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat Alignment from GeneWise AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaagatccatgaccaatgaagttttgcctttctcctttccattgcagGCTCAGCTAGTTACCCTGACTACACCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaaacaattgggccagttggttgtccacataattttgattattagtcat #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctaggtGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccagaccactgc Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctaggtGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccagcatgctga Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccagaccactgc Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccagaccactgc Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccagaccactgc Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccagaccactgc Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaacaggctgctcagatgtgtccaaagtgctctcttctcattgatctagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTTTATTTGCCCGGCCAAGAAGAAgtaagttgccaaatggcaatacataggtgtgtcaggagccagaccactgc Alignment from GeneWise ----------------------------------------------CTTGGTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA-------------------------------------------------- GGAACAGGCTGCTCAGATGTGTCCAAAGTGCTCTCTTCTCATTGATCTAGGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTTTATTTGCCCGGCCAAGAAGAAGTAAGTTGCCAAATGGCAATACATAGGTGTGTCAGGAGCCAGACCACTGC #### Gbf1_ID9784_6 --> 2 - 2 Original Alignment agTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAag gtgattggccctacccagttcaacccactttttctcttattttttattagagTTATTGAGAAAATCTGCGGAGCACACTCTTGTGGACATGGTGCAGCTGCTCTTCACAaggtgagtctctaatagatacaacccttacctgccagctttcacagaattgc Alignment from CESAR agTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAag gtgattggccctacccagttcaacccactttttctcttattttttattagagTTATTGAGAAAATCTGCGGAGCACACTCTTGTGGACATGGTGCAGCTGCTCTTCACAaggtgagtctctaatagatacaacccttacctgccagctttcacagaattgc Alignment from Spaln_aa2Genome AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG gtgattggccctacccagttcaacccactttttctcttattttttattagAGTTATTGAGAAAATCTGCGGAGCACACTCTTGTGGACATGGTGCAGCTGCTCTTCACAAGgtgagtctctaatagatacaacccttacctgccagctttcacagaattgc Alignment from Spaln_nt2Genome AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG gtgattggccctacccagttcaacccactttttctcttattttttattagAGTTATTGAGAAAATCTGCGGAGCACACTCTTGTGGACATGGTGCAGCTGCTCTTCACAAGgtgagtctctaatagatacaacccttacctgccagctttcacagaattgc Alignment from Pairagon AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG gtgattggccctacccagttcaacccactttttctcttattttttattagAGTTATTGAGAAAATCTGCGGAGCACACTCTTGTGGACATGGTGCAGCTGCTCTTCACAAGgtgagtctctaatagatacaacccttacctgccagctttcacagaattgc Alignment from Exonerate_protein2genome AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAGGTTACCTCAGTTTAAAGAAGAACCCAAGAGCTATGTGGGAACCAACATGA gtgattggccctacccagttcaacccactttttctcttattttttattagAGTTATTGAGAAAATCTGCGGAGCACACTCTTGTGGACATGGTGCAGCTGCTCTTCACAAGGTGAGTCTCTAATAGATACAACCCTTACCTGCCAGCTTTCACAGAATTGC Alignment from Exonerate_coding2genome AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAGGTTACCTCAGTTTAAAGAAGAACCCAAGAGCTATGTGGGAACCAACATGA gtgattggccctacccagttcaacccactttttctcttattttttattagAGTTATTGAGAAAATCTGCGGAGCACACTCTTGTGGACATGGTGCAGCTGCTCTTCACAAGGTGAGTCTCTAATAGATACAACCCTTACCTGCCAGCTTTCACAGAATTGC Alignment from GeneWise AGTTATTGAGAAAATCCGCAGAGCACACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG gtgattggccctacccagttcaacccactttttctcttattttttattagAGTTATTGAGAAAATCTGCGGAGCACACTCTTGTGGACATGGTGCAGCTGCTCTTCACAAGgtgagtctctaatagatacaacccttacctgccagctttcacagaattgc #### Gbf1_ID9790_9 --> 2 - 0 Original Alignment gtGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctactaagtttactgcaattgaataaacttgtccattttgtttttcacagggGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACGGATAGTGGCCTGGAGTTGTCTTCACAAACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGGTTACCACAAGTGAGCCTGGAATTAGTGGTTCAGGTAGTTCTGACCAACTTGACACCCAGgttaacctaaaggcattttcataactggggttatatattgtacaaatctc Alignment from CESAR gtGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctactaagtttactgcaattgaataaacttgtccattttgtttttcacagggGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACGGATAGTGGCCTGGAGTTGTCTTCACAAACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGGTTACCACAAGTGAGCCTGGAATTAGTGGTTCAGGTAGTTCTGACCAACTTGACACCCAGgttaacctaaaggcattttcataactggggttatatattgtacaaatctc Alignment from Spaln_aa2Genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctactaagtttactgcaattgaataaacttgtccattttgtttttcacagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACGGATAGTGGCCTGGAGTTGTCTTCACAAACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGGTTACCACAAGTGAGCCTGGAATTAGTGGTTCAGGTAGTTCTGACCAACTTGACACCCAGgttaacctaaaggcattttcataactggggttatatattgtacaaatctc Alignment from Spaln_nt2Genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctactaagtttactgcaattgaataaacttgtccattttgtttttcacagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACGGATAGTGGCCTGGAGTTGTCTTCACAAACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGGTTACCACAAGTGAGCCTGGAATTAGTGGTTCAGGTAGTTCTGACCAACTTGACACCCAGgttaacctaaaggcattttcataactggggttatatattgtacaaatctc Alignment from Pairagon GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTG--------AGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctactaagtttactgcaattgaataaacttgtccattttgtttttcacagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACGGATAGTGGCCTGGAGTTGTCTTCACAAACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGGTTACCACAAGTGAGCCTGGAATTAGTGGTTCAGGTAG--------TTCTGACCAACTTGACACCCAGgttaacctaaaggcattttcataactggggttatatattgtacaaatctc Alignment from Exonerate_protein2genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctactaagtttactgcaattgaataaacttgtccattttgtttttcacagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACGGATAGTGGCCTGGAGTTGTCTTCACAAACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGGTTACCACAAGTGAGCCTGGAATTAGTGGTTCAGGTAGTTCTGACCAACTTGACACCCAGgttaacctaaaggcattttcataactggggttatatattgtacaaatctc Alignment from Exonerate_coding2genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctactaagtttactgcaattgaataaacttgtccattttgtttttcacagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACGGATAGTGGCCTGGAGTTGTCTTCACAAACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGGTTACCACAAGTGAGCCTGGAATTAGTGGTTCAGGTAGTTCTGACCAACTTGACACCCAGgttaacctaaaggcattttcataactggggttatatattgtacaaatctc Alignment from GeneWise GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctactaagtttactgcaattgaataaacttgtccattttgtttttcacagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACGGATAGTGGCCTGGAGTTGTCTTCACAAACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGGTTACCACAAGTGAGCCTGGAATTAGTGGTTCAGGTAGTTCTGACCAACTTGACACCCAGgttaacctaaaggcattttcataactggggttatatattgtacaaatctc #### Gbf1_ID9794_13 --> 0 - 0 Original Alignment ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG caacttgaggagactgtttttgagagatcttcacacccttctgtccccagATGTATATCAAACGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCAACTATTTGGCTTTGGCGCATATCCAGCTCTGTCACTGAGATTTACATTAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaaaacttaccccacttgacagtatagaggttgaataagcctgtttgcc Alignment from CESAR ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG caacttgaggagactgtttttgagagatcttcacacccttctgtccccagATGTATATCAAACGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCAACTATTTGGCTTTGGCGCATATCCAGCTCTGTCACTGAGATTTACATTAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaaaacttaccccacttgacagtatagaggttgaatatatcctgtttct Alignment from Spaln_aa2Genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG caacttgaggagactgtttttgagagatcttcacacccttctgtccccagATGTATATCAAACGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCAACTATTTGGCTTTGGCGCATATCCAGCTCTGTCACTGAGATTTACATTAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaaaacttaccccacttgacagtatagaggttgaataagcctgtttgcc Alignment from Spaln_nt2Genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG caacttgaggagactgtttttgagagatcttcacacccttctgtccccagATGTATATCAAACGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCAACTATTTGGCTTTGGCGCATATCCAGCTCTGTCACTGAGATTTACATTAACTATGAATGTGACTATTATTGTTCAAATCTCTT---AGACCTCATCCAGTTACTTTCCAAAgtaaaacttaccccacttgacagtatagaggttgaataagcctgtttgcc Alignment from Pairagon ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG caacttgaggagactgtttttgagagatcttcacacccttctgtccccagATGTATATCAAACGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCAACTATTTGGCTTTGGCGCATATCCAGCTCTGTCACTGAGATTTACATTAACTATGAATGTGACTATTATTGTTCAAATCTCTT---AGACCTCATCCAGTTACTTTCCAAAgtaaaacttaccccacttgacagtatagaggttgaataagcctgtttgcc Alignment from Exonerate_protein2genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG caacttgaggagactgtttttgagagatcttcacacccttctgtccccagATGTATATCAAACGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCAACTATTTGGCTTTGGCGCATATCCAGCTCTGTCACTGAGATTTACATTAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaaaacttaccccacttgacagtatagaggttgaataagcctgtttgcc Alignment from Exonerate_coding2genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG caacttgaggagactgtttttgagagatcttcacacccttctgtccccagATGTATATCAAACGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCAACTATTTGGCTTTGGCGCATATCCAGCTCTGTCACTGAGATTTACATTAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaaaacttaccccacttgacagtatagaggttgaataagcctgtttgcc Alignment from GeneWise ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG caacttgaggagactgtttttgagagatcttcacacccttctgtccccagATGTATATCAAACGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCAACTATTTGGCTTTGGCGCATATCCAGCTCTGTCACTGAGATTTACATTAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaaaacttaccccacttgacagtatagaggttgaataagcctgtttgcc #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtattttctttttttgttccccatggcagccGACAAAAAGTTCACCAGGAAGCCACCTCGTTATTCCTGCCTCCTGCCAGATCCGTGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagtgtagtgaacctgttcaactatttccaatactcacctgtcacagc Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtattttctttttttgttccccatggcagccGACAAAAAGTTCACCAGGAAGCCACCTCGTTATTCCTGCCTCCTGCCAGATCCGTGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagtgtagtgaacctgttcaactatttccaatactcacctgtcacagc Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtattttctttttttgttccccatggcagCCGACAAAAAGTTCACCAGGAAGCCACCTCGTTATTCCTGCCTCCTGCCAGATCCGTGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagtgtagtgaacctgttcaactatttccaatactcacctgtcacagc Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtattttctttttttgttccccatggcagCCGACAAAAAGTTCACCAGGAAGCCACCTCGTTATTCCTGCCTCCTGCCAGATCCGTGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagtgtagtgaacctgttcaactatttccaatactcacctgtcacagc Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtattttctttttttgttccccatggcagCCGACAAAAAGTTCACCAGGAAGCCACCTCGTTATTCCTGCCTCCTGCCAGATCCGTGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagtgtagtgaacctgttcaactatttccaatactcacctgtcacagc Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtattttctttttttgttccccatggcagCCGACAAAAAGTTCACCAGGAAGCCACCTCGTTATTCCTGCCTCCTGCCAGATCCGTGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagtgtagtgaacctgttcaactatttccaatactcacctgtcacagc Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtattttctttttttgttccccatggcagCCGACAAAAAGTTCACCAGGAAGCCACCTCGTTATTCCTGCCTCCTGCCAGATCCGTGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagtgtagtgaacctgttcaactatttccaatactcacctgtcacagc Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gagtcctttacattgtgccctgtattttctttttttgttccccatggcagCCGACAAAAAGTTCACCAGGAAGCCACCTCGTTATTCCTGCCTCCTGCCAGATCCGTGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagtgtagtgaacctgttcaactatttccaatactcacctgtcacagc #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG cttggacatgtgcaccaggtgtttcctgatactttattgttgtctttaagaAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatgaaactaccaagtaaactaatcagaggttaatgctgcacatcatcc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG cttggacatgtgcaccaggtgtttcctgatactttattgttgtctttaagaAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatgaaactaccaagtaaactaatcagaggttaatgctgcacatcatcc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG cttggacatgtgcaccaggtgtttcctgatactttattgttgtctttaagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatgaaactaccaagtaaactaatcagaggttaatgctgcacatcatcc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG cttggacatgtgcaccaggtgtttcctgatactttattgttgtctttaagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatgaaactaccaagtaaactaatcagaggttaatgctgcacatcatcc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG cttggacatgtgcaccaggtgtttcctgatactttattgttgtctttaagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatgaaactaccaagtaaactaatcagaggttaatgctgcacatcatcc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG cttggacatgtgcaccaggtgtttcctgatactttattgttgtctttaagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatgaaactaccaagtaaactaatcagaggttaatgctgcacatcatcc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG cttggacatgtgcaccaggtgtttcctgatactttattgttgtctttaagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatgaaactaccaagtaaactaatcagaggttaatgctgcacatcatcc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG cttggacatgtgcaccaggtgtttcctgatactttattgttgtctttaagAAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtatgaaactaccaagtaaactaatcagaggttaatgctgcacatcatcc #### Gbf1_ID9808_27 --> 0 - 2 Original Alignment GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAAGAGACATATGATGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACaggtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from CESAR GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAAGAGACATATGATGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACaggtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from Spaln_aa2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAAGAGACATATGATGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from Spaln_nt2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAAGAGACATATGATGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from Pairagon GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAAGAGACATATGATGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from Exonerate_protein2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAAGAGACATATGATGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from Exonerate_coding2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAAGAGACATATGATGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg Alignment from GeneWise GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG agtgtgctagaatcccagcccctttaatctatgtttttatttgtttgcagTCTCTGGTCTCTGTAGCCCCTGATGAAGAGACATATGATGAAGAAGATGCTGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaacctaagttggcctgtagaagtcacaagaatacctcccaaagagatg #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccaggaATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccaggaATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from Exonerate_coding2genome gaacacttggtgactttcacaattgctctgcccttttctctctctcccaggaattgcttgcttatgctgtgatgctcgacgccaggtgcggatgcaggccttgacatatctccaacatgcacttcttgtccctgacctgcagcaactagatgccctggagtgggagtcttgttcaaacaaggtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG gaacacttggtgactttcacaattgctctgcccttttctctctctcccagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTCCCTGACCTGCAGCAACTAGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtaggtgtaactcataatagatgctggttcacagcatacaccccaaaggg #### Gda_ID4890_13 --> 0 - 1 Original Alignment GCTGTTATCCAGAAGTTTCTTTATCTAg aattccgggaacattaggaaattactcataacgttgtggtctttgttaagGCTATTATTCAGAAATTTCTTTATCTAggtgagtacttataaacagtgtcccttttacattataaaatgtagtcgtct Alignment from CESAR GCTGTTATCCAGAAGTTTCTTTATCTAg aattccgggaacattaggaaattactcataacgttgtggtctttgttaagGCTATTATTCAGAAATTTCTTTATCTAggtgagtacttataaacagtgtcccttttacattataaaatgtagtcgtct Alignment from Spaln_aa2Genome GCTGTTATCCAGAAGTTTCTTTATCTAG aattccgggaacattaggaaattactcataacgttgtggtctttgttaagGCTATTATTCAGAAATTTCTTTATCTAGgtgagtacttataaacagtgtcccttttacattataaaatgtagtcgtct Alignment from Spaln_nt2Genome GCTGTTATCCAGAAGTTTCTTTATCTAG aattccgggaacattaggaaattactcataacgttgtggtctttgttaagGCTATTATTCAGAAATTTCTTTATCTAGgtgagtacttataaacagtgtcccttttacattataaaatgtagtcgtct Alignment from Pairagon GCTGTTATCCAGAAGTTTCTTTATCTAG aattccgggaacattaggaaattactcataacgttgtggtctttgttaagGCTATTATTCAGAAATTTCTTTATCTAGgtgagtacttataaacagtgtcccttttacattataaaatgtagtcgtct Alignment from Exonerate_protein2genome GCTGTTATCCAGAAGTTTCTTTATCTAG aattccgggaacattaggaaattactcataacgttgtggtctttgttaagGCTATTATTCAGAAATTTCTTTATCTAGgtgagtacttataaacagtgtcccttttacattataaaatgtagtcgtct Alignment from Exonerate_coding2genome GCTGTTATCCAGAAGTTTCTTTATCTAG aattccgggaacattaggaaattactcataacgttgtggtctttgttaagGCTATTATTCAGAAATTTCTTTATCTAGgtgagtacttataaacagtgtcccttttacattataaaatgtagtcgtct Alignment from GeneWise ---GTTATCCAGAAGTTTCTTTATCTAG aattccgggaacattaggaaattactcataacgttgtggtctttgttaagGCTATTATTCAGAAATTTCTTTATCTAGgtgagtacttataaacagtgtcccttttacattataaaatgtagtcgtct #### Gda_ID4891_12 --> 2 - 0 Original Alignment ccCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCT---CCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG aagttgatgatgcacgggatttctttgtacttttgtttccttttcttcagctTTGGGGCTTGACAGTGAAACTGGAAACTATGAAGTTGGA------------------------------------ACAGACTCACCTCCCATTGACCTATTTTATGGAGACTTTGCTGGTGATATTTCTCAAgtgagtgtattcaactgaatgctttttagtgtgaggagaagggggttggt Alignment from CESAR ccCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG aagttgatgatgcacgggatttctttgtacttttgtttccttttcttcagctTTGGGGCTTGACAGTGAAACTGGAAACTATGAAGTTGGAACAGAC------------------------------TCA---CCTCCCATTGACCTATTTTATGGAGACTTTGCTGGTGATATTTCTCAAgtgagtgtattcaactgaatgctttttagtgtgaggagaagggggttggt Alignment from Spaln_aa2Genome CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG aagttgatgatgcacgggatttctttgtacttttgtttccttttcttcagCTTTGGGGCTTGACAGTGAAACTGGAAACTATGAAGTTGGAACAGAC---------------------------------TCACCTCCCATTGACCTATTTTATGGAGACTTTGCTGGTGATATTTCTCAAgtgagtgtattcaactgaatgctttttagtgtgaggagaagggggttggt Alignment from Spaln_nt2Genome CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG aagttgatgatgcacgggatttctttgtacttttgtttccttttcttcagCTTTGGGGCTTGACAGTGAAACTGGAAACTATGAAGTTGG-------------------------AAC-----AGACTCA---CCTCCCATTGACCTATTTTATGGAGACTTTGCTGGTGATATTTCTCAAgtgagtgtattcaactgaatgctttttagtgtgaggagaagggggttggt Alignment from Pairagon CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACT---CTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG aagttgatgatgcacgggatttctttgtacttttgtttccttttcttcagCTTTGGGGCTTGACAGTGAAACTGGAAACTATGAAGTTGGAA------------------------------------CAGACTCACCTCCCATTGACCTATTTTATGGAGACTTTGCTGGTGATATTTCTCAAgtgagtgtattcaactgaatgctttttagtgtgaggagaagggggttggt Alignment from Exonerate_protein2genome CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG aagttgatgatgcacggGATTTCTTTGTACTTTTGTTTCCTTTTCTTCAGCTTTGGGGCTTGACAGTGAAACTGGAAACTATGAAGTTGGAACAGACTCACCTCCCATTGACCTATTTTATGGAGACTTTGCTGGTGATATTTCTCAAgtgagtgtattcaactgaatgctttttagtgtgaggagaagggggttggt Alignment from Exonerate_coding2genome CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG aagttgatgatgcacggGATTTCTTTGTACTTTTGTTTCCTTTTCTTCAGCTTTGGGGCTTGACAGTGAAACTGGAAACTATGAAGTTGGAACAGACTCACCTCCCATTGACCTATTTTATGGAGACTTTGCTGGTGATATTTCTCAAgtgagtgtattcaactgaatgctttttagtgtgaggagaagggggttggt Alignment from GeneWise CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAGGCT- aagttgatgatgcacgggatttctttgtacttttgtttccttttcttcagCTTTGGGGCTTGACAGTGAAACTGGAAACTATGAAGTTGGAACAGAC---------------------------------TCACCTCCCATTGACCTATTTTATGGAGACTTTGCTGGTGATATTTCTCAAGTGAgtgtattcaactgaatgctttttagtgtgaggagaagggggttggt #### Gda_ID4894_10 --> 1 - 1 Original Alignment gCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAg ttgctgatgagtcagctggagctgagtgcgctagctctctgcttctccagaCTTAGTAGTGGTTTG------------CAAGTTTTGAAGCATAAAATTCAGATAGGAGTGAGGACAggtgagtatacaagggatataaacttgacacaatctcctgatcttatggtg Alignment from CESAR gCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAg ttgctgatgagtcagctggagctgagtgcgctagctctctgcttctccagaCTTAGTAGTGGTTTG------------CAAGTTTTGAAGCATAAAATTCAGATAGGAGTGAGGACAggtgagtatacaagggatataaacttgacacaatctcctgatcttatggtg Alignment from Spaln_aa2Genome GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG ttgctgatgagtcagctggagctgagtgcgctagctctctgcttctccagACTTAGTAGTGGT------------TTGCAAGTTTTGAAGCATAAAATTCAGATAGGAGTGAGGACAGgtgagtatacaagggatataaacttgacacaatctcctgatcttatggtg Alignment from Spaln_nt2Genome GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG ttgctgatgagtcagctggagctgagtgcgctagctctctgcttctccagACTTAGTAGTGGTTTGC------------AAGTTTTGAAGCATAAAATTCAGATAGGAGTGAGGACAGgtgagtatacaagggatataaacttgacacaatctcctgatcttatggtg Alignment from Pairagon GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG ttgctgatgagtcagctggagctgagtgcgctagctctctgcttctccagACTTAGTAGTGGTTTGC------------AAGTTTTGAAGCATAAAATTCAGATAGGAGTGAGGACAGgtgagtatacaagggatataaacttgacacaatctcctgatcttatggtg Alignment from Exonerate_protein2genome CTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG ttgctgatgagtcagctggagctgagtgcgctagctctctgcttctccagACTTAGTAGTGGTTTGCAAGTTTTGAAGCATAAAATTCAGATAGGAGTGAGGACAGgtgagtatacaagggatataaacttgacacaatctcctgatcttatggtg Alignment from Exonerate_coding2genome ttgctgatgagtcagctggagctgagtgcgctagctctctgcttctccagacttagtagtggtttgcaagttttgaagcataaaattcagataggagtgaggacaggtgagtatacaagggatataaacttgacacaatctcctgatcttatggtg Alignment from GeneWise GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG ttgctgatgagtcagctggagctgagtgcgctagctctctgcttctccagACTTAGTAGTGGTTTG------------CAAGTTTTGAAGCATAAAATTCAGATAGGAGTGAGGACAGgtgagtatacaagggatataaacttgacacaatctcctgatcttatggtg #### Gda_ID4896_8 --> 0 - 0 Original Alignment AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG ctttggcaaaaaatatatgcaactacagaagactctgttctctggtgcagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTATCAAAAGCCTGTATCCAAGTTATAAAAACTATACGGATGTCTATGATAAGAACAACCTTTTAACAAACAAGgtcagttgacaaatataggtgctcaatcaaactactgcaaaagattgtca Alignment from CESAR AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG ctttggcaaaaaatatatgcaactacagaagactctgttctctggtgcagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTATCAAAAGCCTGTATCCAAGTTATAAAAACTATACGGATGTCTATGATAAGAACAACCTTTTAACAAACAAGgtcagttgacaaatataggtgctcaatcaaactactgcaaaagattgtca Alignment from Spaln_aa2Genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG ctttggcaaaaaatatatgcaactacagaagactctgttctctggtgcagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTATCAAAAGCCTGTATCCAAGTTATAAAAACTATACGGATGTCTATGATAAGAACAACCTTTTAACAAACAAGgtcagttgacaaatataggtgctcaatcaaactactgcaaaagattgtca Alignment from Spaln_nt2Genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG ctttggcaaaaaatatatgcaactacagaagactctgttctctggtgcagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTATCAAAAGCCTGTATCCAAGTTATAAAAACTATACGGATGTCTATGATAAGAACAACCTTTTAACAAACAAGgtcagttgacaaatataggtgctcaatcaaactactgcaaaagattgtca Alignment from Pairagon AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG ctttggcaaaaaatatatgcaactacagaagactctgttctctggtgcagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTATCAAAAGCCTGTATCCAAGTTATAAAAACTATACGGATGTCTATGATAAGAACAACCTTTTAACAAACAAGgtcagttgacaaatataggtgctcaatcaaactactgcaaaagattgtca Alignment from Exonerate_protein2genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG ctttggcaaaaaatatatgcaactacagaagactctgttctctggtgcagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTATCAAAAGCCTGTATCCAAGTTATAAAAACTATACGGATGTCTATGATAAGAACAACCTTTTAACAAACAAGgtcagttgacaaatataggtgctcaatcaaactactgcaaaagattgtca Alignment from Exonerate_coding2genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG ctttggcaaaaaatatatgcaactacagaagactctgttctctggtgcagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTATCAAAAGCCTGTATCCAAGTTATAAAAACTATACGGATGTCTATGATAAGAACAACCTTTTAACAAACAAGgtcagttgacaaatataggtgctcaatcaaactactgcaaaagattgtca Alignment from GeneWise AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG ctttggcaaaaaatatatgcaactacagaagactctgttctctggtgcagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTATCAAAAGCCTGTATCCAAGTTATAAAAACTATACGGATGTCTATGATAAGAACAACCTTTTAACAAACAAGgtcagttgacaaatataggtgctcaatcaaactactgcaaaagattgtca #### Gda_ID4899_6 --> 1 - 0 Original Alignment aTTTGTGTCAGAAATGCTGCAAAAGAAT gagaactggacagaaaataccttgaatcatgctatcgttaaccttttcagaTTTGTGTTAATAATGTTGCAAAAAAATgtgcgtaattctgtacctgactcctctaaatggtccagtccgaattactg Alignment from CESAR aTTTGTGTCAGAAATGCTGCAAAAGAAT gagaactggacagaaaataccttgaatcatgctatcgttaaccttttcagaTTTGTGTTAATAATGTTGCAAAAAAATgtgcgtaattctgtacctgactcctctaaatggtccagtccgaattactg Alignment from Spaln_aa2Genome ATTTGTGTCAGAAATGCTGCAAAAGAAT gagaactggacagaaaataccttgaatcatgctatcgttaaccttttcagATTTGTGTTAATAATGTTGCAAAAAAATgtgcgtaattctgtacctgactcctctaaatggtccagtccgaattactg Alignment from Spaln_nt2Genome ATTTGTGTCAGAAATGCTGCAAAAGAAT gagaactggacagaaaataccttgaatcatgctatcgttaaccttttcagATTTGTGTTAATAATGTTGCAAAAAAATgtgcgtaattctgtacctgactcctctaaatggtccagtccgaattactg Alignment from Pairagon ATTTGTGTCAGAAATGCTGCAAAAGAAT gagaactggacagaaaataccttgaatcatgctatcgttaaccttttcagATTTGTGTTAATAATGTTGCAAAAAAATgtgcgtaattctgtacctgactcctctaaatggtccagtccgaattactg Alignment from Exonerate_protein2genome gagaactggacagaaaataccttgaatcatgctatcgttaaccttttcagatttgtgttaataatgttgcaaaaaaatgtgcgtaattctgtacctgactcctctaaatggtccagtccgaattactg Alignment from Exonerate_coding2genome gagaactggacagaaaataccttgaatcatgctatcgttaaccttttcagatttgtgttaataatgttgcaaaaaaatgtgcgtaattctgtacctgactcctctaaatggtccagtccgaattactg Alignment from GeneWise ATTTGTGTCAGAAATGCTGCAAAAGAAT gagaactggacagaaaataccttgaatcatgctatcgttaaccttttcagATTTGTGTTAATAATGTTGCAAAAAAATgtgcgtaattctgtacctgactcctctaaatggtccagtccgaattactg #### Gda_ID4901_4 --> 0 - 1 Original Alignment AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAg agggatgcagttatgattagctgattaaccacgttgctttttccatgtagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACTTTACATACAGCCCCATCCCTACTGCTTGCA---ATCATGggtgagccattaagttctcaaatttgtatctaaatagcattgtagtgctcc Alignment from CESAR AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAg agggatgcagttatgattagctgattaaccacgttgctttttccatgtagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACTTTACATACAGCCCCATCCCTACTGCTTGCA---ATCATGggtgagccattaagttctcaaatttgtatctaaatagcattgtagtgctcc Alignment from Spaln_aa2Genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG agggatgcagttatgattagctgattaaccacgttgctttttccatgtagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACTTTACATACAGCCCCATCCCTACTGCTTGCA---ATCATGGgtgagccattaagttctcaaatttgtatctaaatagcattgtagtgctcc Alignment from Spaln_nt2Genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG agggatgcagttatgattagctgattaaccacgttgctttttccatgtagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACTTTACATACAGCCCCATCCCTACTGCTTGC---AATCATGGgtgagccattaagttctcaaatttgtatctaaatagcattgtagtgctcc Alignment from Pairagon AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG agggatgcagttatgattagctgattaaccacgttgctttttccatgtagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACTTTACATACAGCCCCATCCCTACTGCTTGC---AATCATGGgtgagccattaagttctcaaatttgtatctaaatagcattgtagtgctcc Alignment from Exonerate_protein2genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG agggatgcagttatgattagctgattaaccacgttgctttttccatgtagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACTTTACATACAGCCCCATCCCTACTGCTTGCA---ATCATGGgtgagccattaagttctcaaatttgtatctaaatagcattgtagtgctcc Alignment from Exonerate_coding2genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG agggatgcagttatgattagctgattaaccacgttgctttttccatgtagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACTTTACATACAGCCCCATCCCTACTGCTTGCA---ATCATGGgtgagccattaagttctcaaatttgtatctaaatagcattgtagtgctcc Alignment from GeneWise AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG agggatgcagttatgattagctgattaaccacgttgctttttccatgtagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACTTTACATACAGCCCCATCCCTACTGCTTGCA---ATCATGGgtgagccattaagttctcaaatttgtatctaaatagcattgtagtgctcc #### Gfra1_ID12598_7 --> 2 - 0 Original Alignment aaAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaatgtttttgtggctccgttgcagaaAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACCACCATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaacaaatggttgttctgtatcaatgacaaactcacgggtaggccagaa Alignment from CESAR aaAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaatgtttttgtggctccgttgcagaaAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACCACCATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaacaaatggttgttctgtatcaatgacaaactcacgggtaggccagaa Alignment from Spaln_aa2Genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaatgtttttgtggctccgttgcagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACCACCATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaacaaatggttgttctgtatcaatgacaaactcacgggtaggccagaa Alignment from Spaln_nt2Genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaatgtttttgtggctccgttgcagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACCACCATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaacaaatggttgttctgtatcaatgacaaactcacgggtaggccagaa Alignment from Pairagon AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaatgtttttgtggctccgttgcagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACCACCATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaacaaatggttgttctgtatcaatgacaaactcacgggtaggccagaa Alignment from Exonerate_protein2genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaatgtttttgtggctccgttgcagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACCACCATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaacaaatggttgttctgtatcaatgacaaactcacgggtaggccagaa Alignment from Exonerate_coding2genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaatgtttttgtggctccgttgcagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACCACCATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaacaaatggttgttctgtatcaatgacaaactcacgggtaggccagaa Alignment from GeneWise AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaatgtttttgtggctccgttgcagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACCACCATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaacaaatggttgttctgtatcaatgacaaactcacgggtaggccagaa #### Gfra1_ID12601_6 --> 2 - 1 Original Alignment gcACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCa tcctgtgatggtgaaatgacatcttactctgtttttgctctgccttacaggcACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACATGTCTCagtacttttcactgtttgaatcatgtgtgtgatgtggtgatagctccaggt Alignment from CESAR gcACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCa tcctgtgatggtgaaatgacatcttactctgtttttgctctgccttacaggcACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACATGTCTCagtacttttcactgtttgaatcatgtgtgtgatgtggtgatagctccaggt Alignment from Spaln_aa2Genome GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA tcctgtgatggtgaaatgacatcttactctgtttttgctctgccttacagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACATGTCTCAgtacttttcactgtttgaatcatgtgtgtgatgtggtgatagctccaggt Alignment from Spaln_nt2Genome GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA tcctgtgatggtgaaatgacatcttactctgtttttgctctgccttacagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACATGTCTCAgtacttttcactgtttgaatcatgtgtgtgatgtggtgatagctccaggt Alignment from Pairagon GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA tcctgtgatggtgaaatgacatcttactctgtttttgctctgccttacagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACATGTCTCAgtacttttcactgtttgaatcatgtgtgtgatgtggtgatagctccaggt Alignment from Exonerate_protein2genome GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA tcctgtgatggtgaaatgacatcttactctgtttttgctctgccttacagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACATGTCTCAgtacttttcactgtttgaatcatgtgtgtgatgtggtgatagctccaggt Alignment from Exonerate_coding2genome GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA tcctgtgatggtgaaatgacatcttactctgtttttgctctgccttacagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACATGTCTCAgtacttttcactgtttgaatcatgtgtgtgatgtggtgatagctccaggt Alignment from GeneWise GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA tcctgtgatggtgaaatgacatcttactctgtttttgctctgccttacagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACATGTCTCAgtacttttcactgtttgaatcatgtgtgtgatgtggtgatagctccaggt #### Gfra1_ID12679_3 --> 2 - 1 Original Alignment gaAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAg ctcaccaccaaaacaactactctgtatgtgtaccttcctctctctcacaggaAATGACTTACTGGAAGATTCCCCTTATGAGCCAGTTAACAGCAGGGTGTCAGATATTTTTCGAGCAGTTCCAATTATATCCggtaagtaatattgatgagaccacctacggccttcccacatctctgatctg Alignment from CESAR gaAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAg ctcaccaccaaaacaactactctgtatgtgtaccttcctctctctcacaggaAATGACTTACTGGAAGATTCCCCTTATGAGCCAGTTAACAGCAGGGTGTCAGATATTTTTCGAGCAGTTCCAATTATATCCggtaagtaatattgatgagaccacctacggccttcccacatctctgatctg Alignment from Spaln_aa2Genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ctcaccaccaaaacaactactctgtatgtgtaccttcctctctctcacagGAAATGACTTACTGGAAGATTCCCCTTATGAGCCAGTTAACAGCAGGGTGTCAGATATTTTTCGAGCAGTTCCAATTATATCCGgtaagtaatattgatgagaccacctacggccttcccacatctctgatctg Alignment from Spaln_nt2Genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ctcaccaccaaaacaactactctgtatgtgtaccttcctctctctcacagGAAATGACTTACTGGAAGATTCCCCTTATGAGCCAGTTAACAGCAGGGTGTCAGATATTTTTCGAGCAGTTCCAATTATATCCGgtaagtaatattgatgagaccacctacggccttcccacatctctgatctg Alignment from Pairagon GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ctcaccaccaaaacaactactctgtatgtgtaccttcctctctctcacagGAAATGACTTACTGGAAGATTCCCCTTATGAGCCAGTTAACAGCAGGGTGTCAGATATTTTTCGAGCAGTTCCAATTATATCCGgtaagtaatattgatgagaccacctacggccttcccacatctctgatctg Alignment from Exonerate_protein2genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ctcaccaccaaaacaactactctgtatgtgtaccttcctctctctcacagGAAATGACTTACTGGAAGATTCCCCTTATGAGCCAGTTAACAGCAGGGTGTCAGATATTTTTCGAGCAGTTCCAATTATATCCGgtaagtaatattgatgagaccacctacggccttcccacatctctgatctg Alignment from Exonerate_coding2genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ctcaccaccaaaacaactactctgtatgtgtaccttcctctctctcacagGAAATGACTTACTGGAAGATTCCCCTTATGAGCCAGTTAACAGCAGGGTGTCAGATATTTTTCGAGCAGTTCCAATTATATCCGgtaagtaatattgatgagaccacctacggccttcccacatctctgatctg Alignment from GeneWise GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ctcaccaccaaaacaactactctgtatgtgtaccttcctctctctcacagGAAATGACTTACTGGAAGATTCCCCTTATGAGCCAGTTAACAGCAGGGTGTCAGATATTTTTCGAGCAGTTCCAATTATATCCGgtaagtaatattgatgagaccacctacggccttcccacatctctgatctg #### Gfra1_ID12683_2 --> 2 - 1 Original Alignment atTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGg agataccctatactcagatctatctaagagtcccatcttctcattgacagatTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTTGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAAGATGAGTGCTGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGTTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGggtacatcaccagacccccgaccaccccaatcactgcctggcaacggggga Alignment from CESAR atTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGg agataccctatactcagatctatctaagagtcccatcttctcattgacagatTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTTGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAAGATGAGTGCTGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGTTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGggtacatcaccagacccccgaccaccccaatcactgcctggcaacggggga Alignment from Spaln_aa2Genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG agataccctatactcagatctatctaagagtcccatcttctcattgacagATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTTGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAAGATGAGTGCTGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGTTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtacatcaccagacccccgaccaccccaatcactgcctggcaacggggga Alignment from Spaln_nt2Genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG agataccctatactcagatctatctaagagtcccatcttctcattgacagATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTTGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAAGATGAGTGCTGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGTTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtacatcaccagacccccgaccaccccaatcactgcctggcaacggggga Alignment from Pairagon ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG agataccctatactcagatctatctaagagtcccatcttctcattgacagATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTTGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAAGATGAGTGCTGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGTTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtacatcaccagacccccgaccaccccaatcactgcctggcaacggggga Alignment from Exonerate_protein2genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG agataccctatactcagatctatctaagagtcccatcttctcattgacagATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTTGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAAGATGAGTGCTGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGTTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtacatcaccagacccccgaccaccccaatcactgcctggcaacggggga Alignment from Exonerate_coding2genome GTGCTGCCACTCCTGGATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG agataccctatactcagatctatctaagagtcccATCTTCTCATTGACAGATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTTGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAAGATGAGTGCTGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGTTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtacatcaccagacccccgaccaccccaatcactgcctggcaacggggga Alignment from GeneWise TTCCTAGCCACTCTGTACTTCGTGCTGCCACTCCTGGATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG cctatactcagat------CTATCTAAGAGTCCCATCTTCTCATTGACAGATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTTGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAAGATGAGTGCTGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGTTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtacatcaccagacccccgaccaccccaatcactgcctggcaacggggga #### Gldc_ID6392_22 --> 2 - 1 Original Alignment ggTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATg acttggccacaaagactccataatctgggttttgctttgcccaacattagggTATGTGGCTCATGAGTTGATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATggtaataatggtctgcactggtggagataagaattgccctagaaaaatccc Alignment from CESAR ggTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATg acttggccacaaagactccataatctgggttttgctttgcccaacattagggTATGTGGCTCATGAGTTGATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATggtaataatggtctgcactggtggagataagaattgccctagaaaaatccc Alignment from Spaln_aa2Genome GGGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTAT acttggccacaaagactccataatctgggttttgctttgcccaacattagGGTATGTGGCTCATGAGTTGATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtaataatggtctgcactggtggagataagaattgccctagaaaaatccc Alignment from Spaln_nt2Genome GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG acttggccacaaagactccataatctgggttttgctttgcccaacattagGGTATGTGGCTCATGAGTTGATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtaataatggtctgcactggtggagataagaattgccctagaaaaatccc Alignment from Pairagon GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG acttggccacaaagactccataatctgggttttgctttgcccaacattagGGTATGTGGCTCATGAGTTGATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtaataatggtctgcactggtggagataagaattgccctagaaaaatccc Alignment from Exonerate_protein2genome GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG acttggccacaaagactccataatctgggttttgctttgcccaacattagGGTATGTGGCTCATGAGTTGATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtaataatggtctgcactggtggagataagaattgccctagaaaaatccc Alignment from Exonerate_coding2genome acttggccacaaagactccataatctgggttttgctttgcccaacattagggtatgtggctcatgagttgatcttggacactcgacccttcaaaaagtctgccaatgttgaggctgtggatgttgccaagaggctccaggattatggtaataatggtctgcactggtggagataagaattgccctagaaaaatccc Alignment from GeneWise GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG acttggccacaaagactccataatctgggttttgctttgcccaacattagGGTATGTGGCTCATGAGTTGATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtaataatggtctgcactggtggagataagaattgccctagaaaaatccc #### Gldc_ID6398_17 --> 0 - 0 Original Alignment GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcatcatttatgttggcagctctgctcttcccattagGTGTGCCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCACATGGCAGGCATGAAAATCCAGCCAGTAGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagccatgacaaggatcatcatcagtatcttctgacattaaaattgat Alignment from CESAR GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcatcatttatgttggcagctctgctcttcccattagGTGTGCCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCACATGGCAGGCATGAAAATCCAGCCAGTAGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagccatgacaaggatcatcatcagtatcttctgacattaaaattgat Alignment from Spaln_aa2Genome AGTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCAT agtcttaaaaggtgcatcatttatgttggcagctctgctcttcccattagGTGTGCCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCACATGGCAGGCATGAAAATCCAGCCAGTAGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagccatgacaaggatcatcatcagtatcttctgacattaaaattgat Alignment from Spaln_nt2Genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcatcatttatgttggcagctctgctcttcccattagGTGTGCCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCACATGGCAGGCATGAAAATCCAGCCAGTAGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagccatgacaaggatcatcatcagtatcttctgacattaaaattgat Alignment from Pairagon GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcatcatttatgttggcagctctgctcttcccattagGTGTGCCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCACATGGCAGGCATGAAAATCCAGCCAGTAGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagccatgacaaggatcatcatcagtatcttctgacattaaaattgat Alignment from Exonerate_protein2genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcatcatttatgttggcagctctgctcttcccattagGTGTGCCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCACATGGCAGGCATGAAAATCCAGCCAGTAGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagccatgacaaggatcatcatcagtatcttctgacattaaaattgat Alignment from Exonerate_coding2genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcatcatttatgttggcagctctgctcttcccattagGTGTGCCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCACATGGCAGGCATGAAAATCCAGCCAGTAGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagccatgacaaggatcatcatcagtatcttctgacattaaaattgat Alignment from GeneWise GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcatcatttatgttggcagctctgctcttcccattagGTGTGCCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCACATGGCAGGCATGAAAATCCAGCCAGTAGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagccatgacaaggatcatcatcagtatcttctgacattaaaattgat #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagtTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCTTACACAGTATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagtTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCTTACACAGTATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from Spaln_aa2Genome GCTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACT cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagTTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCTTACACAGTATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagTTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCTTACACAGTATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagTTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCTTACACAGTATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagTTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCTTACACAGTATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from Exonerate_coding2genome cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagttaccacttagaaactaaccttgtcccatacatgaagagattggaaaaccgagatatttccctcttacacagtatgatccctctagtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG cctgtggagtggctaatctctgtgtttaccatcgacccccacttccccagTTACCACTTAGAAACTAACCTTGTCCCATACATGAAGAGATTGGAAAACCGAGATATTTCCCTCTTACACAGTATGATCCCTCTAgtaagtgcagtctgacttgttaccatgtacattggtatctatcaggtgtg #### Gldc_ID6403_12 --> 0 - 2 Original Alignment GAATTAGTTGCTGAAGGCATGGGAGAGGAG---CGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACag tgatgatcttttttacatgttgctgtgcagctgtcatgtgtgtcttctagGAATTTGTTTCCAAGGGGATGGGAGAGGAAGAGCAGAAGGGTCTCCTGGGCTGCTCCTTTAAGCGAACCAGCCCCTACCTGAGTCACCAGGTCTTCAATaggtaagttttggctaactcaggagattctgccttggtgccttggtgcaagc Alignment from CESAR GAATTAGTTGCTGAAGGCATGGGAGAG---GAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACag tgatgatcttttttacatgttgctgtgcagctgtcatgtgtgtcttctagGAATTTGTTTCCAAGGGGATGGGAGAGGAAGAGCAGAAGGGTCTCCTGGGCTGCTCCTTTAAGCGAACCAGCCCCTACCTGAGTCACCAGGTCTTCAATaggtaagttttggctaactcaggagattctgccttggtgccttggtgcaagc Alignment from Spaln_aa2Genome AGAATTAGTTGCTGAAGGCATGGGA---GAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACA tgatgatcttttttacatgttgctgtgcagctgtcatgtgtgtcttctagGAATTTGTTTCCAAGGGGATGGGAGAGGAAGAGCAGAAGGGTCTCCTGGGCTGCTCCTTTAAGCGAACCAGCCCCTACCTGAGTCACCAGGTCTTCAATAGgtaagttttggctaactcaggagattctgccttggtgccttggtgcaagc Alignment from Spaln_nt2Genome GAATTAGTTGCTGAAGGCATGGGAGAGGA---GCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG tgatgatcttttttacatgttgctgtgcagctgtcatgtgtgtcttctagGAATTTGTTTCCAAGGGGATGGGAGAGGAAGAGCAGAAGGGTCTCCTGGGCTGCTCCTTTAAGCGAACCAGCCCCTACCTGAGTCACCAGGTCTTCAATAGgtaagttttggctaactcaggagattctgccttggtgccttggtgcaagc Alignment from Pairagon GAATTAGTTGCTGAAGGCATGGGAGAG---GAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG tgatgatcttttttacatgttgctgtgcagctgtcatgtgtgtcttctagGAATTTGTTTCCAAGGGGATGGGAGAGGAAGAGCAGAAGGGTCTCCTGGGCTGCTCCTTTAAGCGAACCAGCCCCTACCTGAGTCACCAGGTCTTCAATAGgtaagttttggctaactcaggagattctgccttggtgccttggtgcaagc Alignment from Exonerate_protein2genome GAATTAGTTGCTGAAGGCATGGGA---GAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG tgatgatcttttttacatgttgctgtgcagctgtcatgtgtgtcttctagGAATTTGTTTCCAAGGGGATGGGAGAGGAAGAGCAGAAGGGTCTCCTGGGCTGCTCCTTTAAGCGAACCAGCCCCTACCTGAGTCACCAGGTCTTCAATAGgtaagttttggctaactcaggagattctgccttggtgccttggtgcaagc Alignment from Exonerate_coding2genome GAATTAGTTGCTGAAGGCATGGGA---GAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG tgatgatcttttttacatgttgctgtgcagctgtcatgtgtgtcttctagGAATTTGTTTCCAAGGGGATGGGAGAGGAAGAGCAGAAGGGTCTCCTGGGCTGCTCCTTTAAGCGAACCAGCCCCTACCTGAGTCACCAGGTCTTCAATAGgtaagttttggctaactcaggagattctgccttggtgccttggtgcaagc Alignment from GeneWise GAATTAGTTGCTGAAGGCATGGGAGAGGAG---CGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG tgatgatcttttttacatgttgctgtgcagctgtcatgtgtgtcttctagGAATTTGTTTCCAAGGGGATGGGAGAGGAAGAGCAGAAGGGTCTCCTGGGCTGCTCCTTTAAGCGAACCAGCCCCTACCTGAGTCACCAGGTCTTCAATAGgtaagttttggctaactcaggagattctgccttggtgccttggtgcaagc #### Gldc_ID6409_6 --> 1 - 0 Original Alignment aTATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG aaatgagagacactgaacctggaaggacatggacttttggcatttcatagaTATAGGGGTGTGCTTGTCAAATTGAAGTTGCCCCATAGAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTCCTCTTCCAATACCAGGACACTGAGGGGAAGGTGGAGGACTTCACAGAGCTTGTTCAAAGAGCTCATCAGACTGGAgtgagaactctgccgaaactggatctcagctgcgttctgatacccacatg Alignment from CESAR aTATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG aaatgagagacactgaacctggaaggacatggacttttggcatttcatagaTATAGGGGTGTGCTTGTCAAATTGAAGTTGCCCCATAGAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTCCTCTTCCAATACCAGGACACTGAGGGGAAGGTGGAGGACTTCACAGAGCTTGTTCAAAGAGCTCATCAGACTGGAgtgagaactctgccgaaactggatctcagctgcgttctgatacccacatg Alignment from Spaln_aa2Genome ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG aaatgagagacactgaacctggaaggacatggacttttggcatttcatagATATAGGGGTGTGCTTGTCAAATTGAAGTTGCCCCATAGAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTCCTCTTCCAATACCAGGACACTGAGGGGAAGGTGGAGGACTTCACAGAGCTTGTTCAAAGAGCTCATCAGACTGGAgtgagaactctgccgaaactggatctcagctgcgttctgatacccacatg Alignment from Spaln_nt2Genome ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG aaatgagagacactgaacctggaaggacatggacttttggcatttcatagATATAGGGGTGTGCTTGTCAAATTGAAGTTGCCCCATAGAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTCCTCTTCCAATACCAGGACACTGAGGGGAAGGTGGAGGACTTCACAGAGCTTGTTCAAAGAGCTCATCAGACTGGAgtgagaactctgccgaaactggatctcagctgcgttctgatacccacatg Alignment from Pairagon ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG aaatgagagacactgaacctggaaggacatggacttttggcatttcatagATATAGGGGTGTGCTTGTCAAATTGAAGTTGCCCCATAGAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTCCTCTTCCAATACCAGGACACTGAGGGGAAGGTGGAGGACTTCACAGAGCTTGTTCAAAGAGCTCATCAGACTGGAgtgagaactctgccgaaactggatctcagctgcgttctgatacccacatg Alignment from Exonerate_protein2genome ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG aaatgagagacactgaacctggaaggacatggacttttggcatttcatagATATAGGGGTGTGCTTGTCAAATTGAAGTTGCCCCATAGAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTCCTCTTCCAATACCAGGACACTGAGGGGAAGGTGGAGGACTTCACAGAGCTTGTTCAAAGAGCTCATCAGACTGGAgtgagaactctgccgaaactggatctcagctgcgttctgatacccacatg Alignment from Exonerate_coding2genome ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG aaatgagagacactgaacctggaaggacatggacttttggcatttcatagATATAGGGGTGTGCTTGTCAAATTGAAGTTGCCCCATAGAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTCCTCTTCCAATACCAGGACACTGAGGGGAAGGTGGAGGACTTCACAGAGCTTGTTCAAAGAGCTCATCAGACTGGAgtgagaactctgccgaaactggatctcagctgcgttctgatacccacatg Alignment from GeneWise ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG aaatgagagacactgaacctggaaggacatggacttttggcatttcatagATATAGGGGTGTGCTTGTCAAATTGAAGTTGCCCCATAGAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTCCTCTTCCAATACCAGGACACTGAGGGGAAGGTGGAGGACTTCACAGAGCTTGTTCAAAGAGCTCATCAGACTGGAgtgagaactctgccgaaactggatctcagctgcgttctgatacccacatg #### Gldc_ID6414_3 --> 2 - 2 Original Alignment gtGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGAtg tttgccatgctggtaggctgagatcctcggatttatatttcattttataggtGAGAACGATGTCCTTGAGACCTCACATGCAATTGCCAGCAAGAACCAAATTTGGAGGTCTTATGTTGGTATGGGCTATTATAACTGCTCAGTGCCCCAGACCATATTGCGGAACTTGTTGGAGAACTCTGGGtggtgagtcctgctgtactactcaccaaacaaattctcatgattatattgta Alignment from CESAR gtGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGAtg tttgccatgctggtaggctgagatcctcggatttatatttcattttataggtGAGAACGATGTCCTTGAGACCTCACATGCAATTGCCAGCAAGAACCAAATTTGGAGGTCTTATGTTGGTATGGGCTATTATAACTGCTCAGTGCCCCAGACCATATTGCGGAACTTGTTGGAGAACTCTGGGtggtgagtcctgctgtactactcaccaaacaaattctcatgattatattgta Alignment from Spaln_aa2Genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgccatgctggtaggctgagatcctcggatttatatttcattttatagGTGAGAACGATGTCCTTGAGACCTCACATGCAATTGCCAGCAAGAACCAAATTTGGAGGTCTTATGTTGGTATGGGCTATTATAACTGCTCAGTGCCCCAGACCATATTGCGGAACTTGTTGGAGAACTCTGGGTGgtgagtcctgctgtactactcaccaaacaaattctcatgattatattgta Alignment from Spaln_nt2Genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgccatgctggtaggctgagatcctcggatttatatttcattttatagGTGAGAACGATGTCCTTGAGACCTCACATGCAATTGCCAGCAAGAACCAAATTTGGAGGTCTTATGTTGGTATGGGCTATTATAACTGCTCAGTGCCCCAGACCATATTGCGGAACTTGTTGGAGAACTCTGGGTGgtgagtcctgctgtactactcaccaaacaaattctcatgattatattgta Alignment from Pairagon GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgccatgctggtaggctgagatcctcggatttatatttcattttatagGTGAGAACGATGTCCTTGAGACCTCACATGCAATTGCCAGCAAGAACCAAATTTGGAGGTCTTATGTTGGTATGGGCTATTATAACTGCTCAGTGCCCCAGACCATATTGCGGAACTTGTTGGAGAACTCTGGGTGgtgagtcctgctgtactactcaccaaacaaattctcatgattatattgta Alignment from Exonerate_protein2genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgccatgctggtaggctgagatcctcggatttatatttcattttatagGTGAGAACGATGTCCTTGAGACCTCACATGCAATTGCCAGCAAGAACCAAATTTGGAGGTCTTATGTTGGTATGGGCTATTATAACTGCTCAGTGCCCCAGACCATATTGCGGAACTTGTTGGAGAACTCTGGGTGgtgagtcctgctgtactactcaccaaacaaattctcatgattatattgta Alignment from Exonerate_coding2genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgccatgctggtaggctgagatcctcggatttatatttcattttatagGTGAGAACGATGTCCTTGAGACCTCACATGCAATTGCCAGCAAGAACCAAATTTGGAGGTCTTATGTTGGTATGGGCTATTATAACTGCTCAGTGCCCCAGACCATATTGCGGAACTTGTTGGAGAACTCTGGGTGgtgagtcctgctgtactactcaccaaacaaattctcatgattatattgta Alignment from GeneWise GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgccatgctggtaggctgagatcctcggatttatatttcattttatagGTGAGAACGATGTCCTTGAGACCTCACATGCAATTGCCAGCAAGAACCAAATTTGGAGGTCTTATGTTGGTATGGGCTATTATAACTGCTCAGTGCCCCAGACCATATTGCGGAACTTGTTGGAGAACTCTGGGTGgtgagtcctgctgtactactcaccaaacaaattctcatgattatattgta #### Glyat_ID3430_3 --> 0 - 1 Original Alignment GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAa acagtggtcattttatggtgttatacatttctgttgctatggtaatcaagGAAATGACAGACGACCTTGAGTTCTACATCATTACCTACCAGGCCTACTCAAAGGACACCCAAAATTTGCAAGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAGagtaaggacatgtgtaatgaggaaatgtcaaattagtaacttgactttata Alignment from CESAR GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAa acagtggtcattttatggtgttatacatttctgttgctatggtaatcaagGAAATGACAGACGACCTTGAGTTCTACATCATTACCTACCAGGCCTACTCAAAGGACACCCAAAATTTGCAAGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAGagtaaggacatgtgtaatgaggaaatgtcaaattagtaacttgactttata Alignment from Spaln_aa2Genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA acagtggtcattttatggtgttatacatttctgttgctatggtaatcaagGAAATGACAGACGACCTTGAGTTCTACATCATTACCTACCAGGCCTACTCAAAGGACACCCAAAATTTGCAAGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAGAgtaaggacatgtgtaatgaggaaatgtcaaattagtaacttgactttata Alignment from Spaln_nt2Genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA acagtggtcattttatggtgttatacatttctgttgctatggtaatcaagGAAATGACAGACGACCTTGAGTTCTACATCATTACCTACCAGGCCTACTCAAAGGACACCCAAAATTTGCAAGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAGAgtaaggacatgtgtaatgaggaaatgtcaaattagtaacttgactttata Alignment from Pairagon GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA acagtggtcattttatggtgttatacatttctgttgctatggtaatcaagGAAATGACAGACGACCTTGAGTTCTACATCATTACCTACCAGGCCTACTCAAAGGACACCCAAAATTTGCAAGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAGAgtaaggacatgtgtaatgaggaaatgtcaaattagtaacttgactttata Alignment from Exonerate_protein2genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA acagtggtcattttatggtgttatacatttctgttgctatggtaatcaagGAAATGACAGACGACCTTGAGTTCTACATCATTACCTACCAGGCCTACTCAAAGGACACCCAAAATTTGCAAGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAGAgtaaggacatgtgtaatgaggaaatgtcaaattagtaacttgactttata Alignment from Exonerate_coding2genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA acagtggtcattttatggtgttatacatttctgttgctatggtaatcaagGAAATGACAGACGACCTTGAGTTCTACATCATTACCTACCAGGCCTACTCAAAGGACACCCAAAATTTGCAAGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAGAgtaaggacatgtgtaatgaggaaatgtcaaattagtaacttgactttata Alignment from GeneWise GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA acagtggtcattttatggtgttatacatttctgttgctatggtaatcaagGAAATGACAGACGACCTTGAGTTCTACATCATTACCTACCAGGCCTACTCAAAGGACACCCAAAATTTGCAAGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAGAgtaaggacatgtgtaatgaggaaatgtcaaattagtaacttgactttata #### Gm4952_ID3421_2 --> 0 - 0 Original Alignment GTTTATGGGACTGTCTTCCACATGAACCAGGGAAACCCATTCAAGCTCAAGGCTCTGGTGGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGTCCTCGGGAACAG ttataatgatcagacctccaaatttaacgctttgtgtttcctcttcacagGTCTATGGGACTGTCTTCCATATGAACCATGGGAACCCATTCAAGCTCAAGTCCCTGGTGGACAAGTGGCCTGATTTTAACACAATTGTTGTCCGTCCACGAGAGCAGgttagttgggatcgttgtgtaagcatttgctgggtgtcattgtggggatg Alignment from CESAR GTTTATGGGACTGTCTTCCACATGAACCAGGGAAACCCATTCAAGCTCAAGGCTCTGGTGGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGTCCTCGGGAACAG ttataatgatcagacctccaaatttaacgctttgtgtttcctcttcacagGTCTATGGGACTGTCTTCCATATGAACCATGGGAACCCATTCAAGCTCAAGTCCCTGGTGGACAAGTGGCCTGATTTTAACACAATTGTTGTCCGTCCACGAGAGCAGgttagttgggatcgttgtgtaagcatttgctgggtgtcattgtggggatg Alignment from Spaln_aa2Genome GTTTATGGGACTGTCTTCCACATGAACCAGGGAAACCCATTCAAGCTCAAGGCTCTGGTGGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGTCCTCGGGAACAG ttataatgatcagacctccaaatttaacgctttgtgtttcctcttcacagGTCTATGGGACTGTCTTCCATATGAACCATGGGAACCCATTCAAGCTCAAGTCCCTGGTGGACAAGTGGCCTGATTTTAACACAATTGTTGTCCGTCCACGAGAGCAGgttagttgggatcgttgtgtaagcatttgctgggtgtcattgtggggatg Alignment from Spaln_nt2Genome GTTTATGGGACTGTCTTCCACATGAACCAGGGAAACCCATTCAAGCTCAAGGCTCTGGTGGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGTCCTCGGGAACAG ttataatgatcagacctccaaatttaacgctttgtgtttcctcttcacagGTCTATGGGACTGTCTTCCATATGAACCATGGGAACCCATTCAAGCTCAAGTCCCTGGTGGACAAGTGGCCTGATTTTAACACAATTGTTGTCCGTCCACGAGAGCAGgttagttgggatcgttgtgtaagcatttgctgggtgtcattgtggggatg Alignment from Pairagon GTTTATGGGACTGTCTTCCACATGAACCAGGGAAACCCATTCAAGCTCAAGGCTCTGGTGGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGTCCTCGGGAACAG ttataatgatcagacctccaaatttaacgctttgtgtttcctcttcacagGTCTATGGGACTGTCTTCCATATGAACCATGGGAACCCATTCAAGCTCAAGTCCCTGGTGGACAAGTGGCCTGATTTTAACACAATTGTTGTCCGTCCACGAGAGCAGgttagttgggatcgttgtgtaagcatttgctgggtgtcattgtggggatg Alignment from Exonerate_protein2genome GTTTATGGGACTGTCTTCCACATGAACCAGGGAAACCCATTCAAGCTCAAGGCTCTGGTGGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGTCCTCGGGAACAG ttataatgatcagacctccaaatttaacgctttgtgtttcctcttcacagGTCTATGGGACTGTCTTCCATATGAACCATGGGAACCCATTCAAGCTCAAGTCCCTGGTGGACAAGTGGCCTGATTTTAACACAATTGTTGTCCGTCCACGAGAGCAGgttagttgggatcgttgtgtaagcatttgctgggtgtcattgtggggatg Alignment from Exonerate_coding2genome GTTTATGGGACTGTCTTCCACATGAACCAGGGAAACCCATTCAAGCTCAAGGCTCTGGTGGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGTCCTCGGGAACAG ttataatgatcagacctccaaatttaacgctttgtgtttcctcttcacagGTCTATGGGACTGTCTTCCATATGAACCATGGGAACCCATTCAAGCTCAAGTCCCTGGTGGACAAGTGGCCTGATTTTAACACAATTGTTGTCCGTCCACGAGAGCAGgttagttgggatcgttgtgtaagcatttgctgggtgtcattgtggggatg Alignment from GeneWise GTTTATGGGACTGTCTTCCACATGAACCAGGGAAACCCATTCAAGCTCAAGGCTCTGGTGGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGTCCTCGGGAACAG ttataatgatcagacctccaaatttaacgctttgtgtttcctcttcacagGTCTATGGGACTGTCTTCCATATGAACCATGGGAACCCATTCAAGCTCAAGTCCCTGGTGGACAAGTGGCCTGATTTTAACACAATTGTTGTCCGTCCACGAGAGCAGgttagttgggatcgttgtgtaagcatttgctgggtgtcattgtggggatg #### Gm815_ID5778_2 --> 0 - 1 Original Alignment TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACt tacagcttttttatacaccacaccttatgtttctctcacttccatttcagTCCTTAGGTACCATGCTTCTATGT------------------------------------------------------------TCACAGAGC------CACCACtgtaattaaaaaaaaagacaagcccgtaatcttagtaaagttgatgcatta Alignment from CESAR TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACt tacagcttttttatacaccacaccttatgtttctctcacttccatttcagTCCTTAGGTACCATGCTTCTATGTTCA------------------------CAGAGC------------------------------CAC------------CACtgtaattaaaaaaaaagacaagcccgtaatcttagtaaagttgatgcatta Alignment from Spaln_aa2Genome TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATG tacagcttttttatacaccacaccttatgtttctctcacttccatttcagTCCTTAGGTACCATGCTTCTATGTTCACAGAGCCACCACTgtaattaaaaaaaaagacaagcccgtaatcttagtaaagttgatgcatta Alignment from Spaln_nt2Genome TCCTTAGGAACGATGCTTCTGTGCTG-CGTAGAAGCCCAT tacagcttttttatacaccacaccttatgtttctctcacttccatttcagTCCTTAGGTACCATGCTTCTATGTTCACAGAGCCACCACTgtaattaaaaaaaaagacaagcccgtaatcttagtaaagttgatgcatta Alignment from Pairagon TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTC-------CCCCACT tacagcttttttatacaccacaccttatgtttctctcacttccatttcagTCCTTAGGTACCATGCTTCTATG-------------------------------------------------------------------------TTCACAGAGCCACCACTgtaattaaaaaaaaagacaagcccgtaatcttagtaaagttgatgcatta Alignment from Exonerate_protein2genome GAGTCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAA tacagcttttttatacaccacaccttatgtttctctcacttccatttCAGTCCTTAGGTACCATGCTTCTATGTTCACAGAGCCACCACTGTAATTAAAAAAAAAGACAAGCCCGTAATCTTAGTAAAGttgatgcatta Alignment from Exonerate_coding2genome tacagcttttttatacaccacaccttatgtttctctcacttccatttcagtccttaggtaccatgcttctatgttcacagagccaccactgtaattaaaaaaaaagacaagcccgtaatcttagtaaagttgatgcatta Alignment from GeneWise tacagcttttttatacaccacaccttatgtttctctcacttccatttcagtccttaggtaccatgcttctatgttcacagagccaccactgtaattaaaaaaaaagacaagcccgtaatcttagtaaagttgatgcatta #### Gm815_ID5779_3 --> 2 - 0 Original Alignment gtGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctatttcacagatattgttgtttcatctcatttcttaggtGCCTCAAGGGAGGAAGGCCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgcatgtccatttatggctcatggtcccaaaaagtggaaact Alignment from CESAR gtGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctatttcacagatattgttgtttcatctcatttcttaggtGCCTCAAGGGAGGAAGGCCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgcatgtccatttatggctcatggtcccaaaaagtggaaact Alignment from Spaln_aa2Genome GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctatttcacagatattgttgtttcatctcatttcttagGTGCCTCAAGGGAGGAAGGCCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgcatgtccatttatggctcatggtcccaaaaagtggaaact Alignment from Spaln_nt2Genome GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctatttcacagatattgttgtttcatctcatttcttagGTGCCTCAAGGGAGGAAGGCCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgcatgtccatttatggctcatggtcccaaaaagtggaaact Alignment from Pairagon GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctatttcacagatattgttgtttcatctcatttcttagGTGCCTCAAGGGAGGAAGGCCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgcatgtccatttatggctcatggtcccaaaaagtggaaact Alignment from Exonerate_protein2genome CTGCTTCCCATACTTTTTTCCCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctatttcacagATATTGTTGTTTCATCTCATTTCTTAGGTGCCTCAAGGGAGGAAGGCCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgcatgtccatttatggctcatggtcccaaaaagtggaaact Alignment from Exonerate_coding2genome GCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctatttcacagatattgttgtttcatctcatttcttaggtGCCTCAAGGGAGGAAGGCCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgcatgtccatttatggctcatggtcccaaaaagtggaaact Alignment from GeneWise GCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctatttcacagatattgttgtttcatctcatttcttaggtGCCTCAAGGGAGGAAGGCCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgcatgtccatttatggctcatggtcccaaaaagtggaaact #### Gm8369_ID3206_2 --> 0 - 0 Original Alignment TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tttgggtgagctggcctaattctggcagttgccgtcaccttccgttctagGTTATTGTCTCAGGATCATTTTCAATTGTAGCAGAAGTGAAAAATGCAAAAAGATTAgtatgttactcagctgcttgtattatagaaaggccactgcacatacccct Alignment from CESAR TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tttgggtgagctggcctaattctggcagttgccgtcaccttccgttctagGTTATTGTCTCAGGATCATTTTCAATTGTAGCAGAAGTGAAAAATGCAAAAAGATTAgtatgttactcagctgcttgtattatagaaaggccactgcacatacccct Alignment from Spaln_aa2Genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tttgggtgagctggcctaattctggcagttgccgtcaccttccgttctagGTTATTGTCTCAGGATCATTTTCAATTGTAGCAGAAGTGAAAAATGCAAAAAGATTAgtatgttactcagctgcttgtattatagaaaggccactgcacatacccct Alignment from Spaln_nt2Genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tttgggtgagctggcctaattctggcagttgccgtcaccttccgttctagGTTATTGTCTCAGGATCATTTTCAATTGTAGCAGAAGTGAAAAATGCAAAAAGATTAgtatgttactcagctgcttgtattatagaaaggccactgcacatacccct Alignment from Pairagon TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tttgggtgagctggcctaattctggcagttgccgtcaccttccgttctagGTTATTGTCTCAGGATCATTTTCAATTGTAGCAGAAGTGAAAAATGCAAAAAGATTAgtatgttactcagctgcttgtattatagaaaggccactgcacatacccct Alignment from Exonerate_protein2genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tttgggtgagctggcctaattctggcagttgccgtcaccttccgttctagGTTATTGTCTCAGGATCATTTTCAATTGTAGCAGAAGTGAAAAATGCAAAAAGATTAgtatgttactcagctgcttgtattatagaaaggccactgcacatacccct Alignment from Exonerate_coding2genome CCAATAATGTTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tttgggtgagctggcctaattctggcagttgccgtcaccttCCGTTCTAGGTTATTGTCTCAGGATCATTTTCAATTGTAGCAGAAGTGAAAAATGCAAAAAGATTAgtatgttactcagctgcttgtattatagaaaggccactgcacatacccct Alignment from GeneWise TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tttgggtgagctggcctaattctggcagttgccgtcaccttccgttctagGTTATTGTCTCAGGATCATTTTCAATTGTAGCAGAAGTGAAAAATGCAAAAAGATTAgtatgttactcagctgcttgtattatagaaaggccactgcacatacccct #### Golga7b_ID8450_3 --> 0 - 0 Original Alignment ATTGAGCGGCAGCTCTTTGAGGAGACGGTGAAGACCCTCAATGGTTTTTATGCGGAGGCTGAGAAGATCGGGGGC---AGCTCCTATCTGGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG GTTCTCAAG gtaaaaactgtgctgaatgccatagtggtgataccgtttttctcttgcagACTGACCGA---CTTTTCAAAGCAACAGTCAAAACCCTCAATGGATTCTATGCAGAGGCCAAGAAAATTGGT---GGGAGCTCATACTTGGAGGGGTGCCTTGCCTGCAGAACTGCCTCGTTTATCTTTCTTTGCATGGAG---AACTACAAGAAGgtaagcggctagcccattgagttgctttctgtctttcgcagGTTCTGAAG Alignment from CESAR ATTGAGCGGCAGCTCTTTGAGGAGACGGTGAAGACCCTCAATGGTTTTTATGCGGAGGCTGAGAAGATCGGGGGCAGCTCCTATCTGGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG GTTCTCAAG gtaaaaactgtgctgaatgccatagtggtgataccgtttttctcttgcagACTGACCGA---CTTTTCAAAGCAACAGTCAAAACCCTCAATGGATTCTATGCAGAGGCCAAGAAAATTGGTGGGAGCTCATACTTGGAGGGGTGCCTTGCCTGCAGAACTGCCTCGTTTATCTTTCTTTGCATGGAG---AACTACAAGAAGgtaagcggctagcccattgtccatatggaatttatttccagGTTCTGAAG Alignment from Spaln_aa2Genome ATTGAGCGGCAGCTCTTTGAGGAGACGGTGAAGACCCTCAATGGTTTTTATGCGGAGGCTGAGAAGATCGGGGGCAGCTCCTATCTGGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG GTTCTCAAG gtaaaaactgtgctgaatgccatagtggtgataccgtttttctcttgcagACTGACCGA---CTTTTCAAAGCAACAGTCAAAACCCTCAATGGATTCTATGCAGAGGCCAAGAAAATTGGTGGGAGCTCATACTTGGAGGGGTGCCTTGCCTGCAGAACTGCCTCGTTTATCTTTCTTTGCATGGAG---AACTACAAGAAGgtaagcggctagcccattgagttgctttctgtctttcgcagGTTCTGAAG Alignment from Spaln_nt2Genome ATTGAGCGGCAGCTCTTTGAGGAGACGGTGAAGACCCTCAATGGTTTTTATGCGGAGGCTGAGAAGATCGGGGGCAGCTCCTATCTGGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG GTTCTCAAG gtaaaaactgtgctgaatgccatagtggtgataccgtttttctcttgcagACTGACCG---ACTTTTCAAAGCAACAGTCAAAACCCTCAATGGATTCTATGCAGAGGCCAAGAAAATTGGTGGGAGCTCATACTTGGAGGGGTGCCTTGCCTGCAGAACTGCCTCGTTTATCTTTCTTTGCATGGAGA---ACTACAAGAAGgtaagcggctagcccattgagttgctttctgtctttcgcagGTTCTGAAG Alignment from Pairagon ATTGAGCGGCAGCTCTTTGAGGAGACGGTGAAGACCCTCAATGGTTTTTATGCGGAGGCTGAGAAGATCGGGGGCAGCTCCTATCTGGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG GTTCTCAAG gtaaaaactgtgctgaatgccatagtggtgataccgtttttctcttgcagactgaccgacttttcaaagcaacag----------------------------TCAAAACCCTCAATGGATTCTATGCAGAGGCCAAGAAAATTGGTGGGAGCTCATACTTGGAGGGGTGCCTTGCCTGCAGAACTGCCTCGTTTATCTTTCTTTGCATGGAGA---ACTACAAGAAGgtaagcggctagcccattgagttgctttctgtctttcgcagGTTCTGAAG Alignment from Exonerate_protein2genome ATTGAGCGGCAGCTCTTTGAGGAGACGGTGAAGACCCTCAATGGTTTTTATGCGGAGGCTGAGAAGATCGGGGGCAGCTCCTATCTGGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG GTTCTCAAG gtaaaaactgtgctgaatgccatagtggtgataccgtttttctcttgcagACTGACCGA---CTTTTCAAAGCAACAGTCAAAACCCTCAATGGATTCTATGCAGAGGCCAAGAAAATTGGTGGGAGCTCATACTTGGAGGGGTGCCTTGCCTGCAGAACTGCCTCGTTTATCTTTCTTTGCATGGAG---AACTACAAGAAGgtaagcggctagcccattgagttgctttctgtctttcgcagGTTCTGAAG Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTGAGCGGCAGCTCTTTGAGGAGACGGTGAAGACCCTCAATGGTTTTTATGCGGAGGCTGAGAAGATCGGGGGCAGCTCCTATCTGGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG GTTCTCAAG gtaaaaactgtgctgaatgccatagtggtgataccgtttttctcttgcagACTGACCGA---CTTTTCAAAGCAACAGTCAAAACCCTCAATGGATTCTATGCAGAGGCCAAGAAAATTGGTGGGAGCTCATACTTGGAGGGGTGCCTTGCCTGCAGAACTGCCTCGTTTATCTTTCTTTGCATGGAG---AACTACAAGAAGgtaagcggctagcccattgagttgctttctgtctttcgcagGTTCTGAAG #### Golga7b_ID8451_4 --> 0 - 0 Original Alignment TATGAGAAG GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT TACAAGAAGgtaaggggctagcccattgtccatatggaatttatttccagGTTCTGAAGAAGGTTCTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCTCGTGGACTGCTGCTGACTGATCCAGTGGAACGTGGAATGAGGGTAgtaagctactgggtatcctgaacatataacttgctcgatggctaagatct Alignment from CESAR TATGAGAAG GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT TACAAGAAGgtaagcggctagcccattgtccatatggaatttatttccagGTTCTGAAGAAGGTTCTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCTCGTGGACTGCTGCTGACTGATCCAGTGGAACGTGGAATGAGGGTAgtaagctactgggtatcctgaacatataacttgctcgatggctaagatct Alignment from Spaln_aa2Genome TATGAGAAG GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT TACAAGAAGgtaaggggctagcccattgtccatatggaatttatttccagGTTCTGAAGAAGGTTCTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCTCGTGGACTGCTGCTGACTGATCCAGTGGAACGTGGAATGAGGGTAgtaagctactgggtatcctgaacatataacttgctcgatggctaagatct Alignment from Spaln_nt2Genome TATGAGAAG GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT TACAAGAAGgtaaggggctagcccattgtccatatggaatttatttccagGTTCTGAAGAAGGTTCTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCTCGTGGACTGCTGCTGACTGATCCAGTGGAACGTGGAATGAGGGTAgtaagctactgggtatcctgaacatataacttgctcgatggctaagatct Alignment from Pairagon TATGAGAAG GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT TACAAGAAGgtaaggggctagcccattgtccatatggaatttatttccagGTTCTGAAGAAGGTTCTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCTCGTGGACTGCTGCTGACTGATCCAGTGGAACGTGGAATGAGGGTAgtaagctactgggtatcctgaacatataacttgctcgatggctaagatct Alignment from Exonerate_protein2genome TATGAGAAG GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT TACAAGAAGgtaaggggctagcccattgtccatatggaatttatttccagGTTCTGAAGAAGGTTCTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCTCGTGGACTGCTGCTGACTGATCCAGTGGAACGTGGAATGAGGGTAgtaagctactgggtatcctgaacatataacttgctcgatggctaagatct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TATGAGAAG GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT TACAAGAAGgtaaggggctagcccattgtccatatggaatttatttccagGTTCTGAAGAAGGTTCTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCTCGTGGACTGCTGCTGACTGATCCAGTGGAACGTGGAATGAGGGTAgtaagctactgggtatcctgaacatataacttgctcgatggctaagatct #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG agtttctatccccattaatagtggataacacaatctgtccttctccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtgagggaagataagaatagatgcccaagcttagtgcaggagggttttcc #### Gpam_ID11531_18 --> 0 - 1 Original Alignment GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACg tccttatgcaattaatcaatatgagaggctgtaattttggggctgttcagGTCAGCCAGTCTAAAGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCTTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATggcaagttggtcacatgcatggacttagtggaaatggaatactgaccatga Alignment from CESAR GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACg tccttatgcaattaatcaatatgagaggctgtaattttggggctgttcagGTCAGCCAGTCTAAAGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCTTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATggcaagttggtcacatgcatggacttagtggaaatggaatactgaccatga Alignment from Spaln_aa2Genome GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG tccttatgcaattaatcaatatgagaggctgtaattttggggctgttcagGTCAGCCAGTCTAAAGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCTTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATGgcaagttggtcacatgcatggacttagtggaaatggaatactgaccatga Alignment from Spaln_nt2Genome GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG tccttatgcaattaatcaatatgagaggctgtaattttggggctgttcagGTCAGCCAGTCTAAAGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCTTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATGgcaagttggtcacatgcatggacttagtggaaatggaatactgaccatga Alignment from Pairagon GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG tccttatgcaattaatcaatatgagaggctgtaattttggggctgttcagGTCAGCCAGTCTAAAGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCTTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATGgcaagttggtcacatgcatggacttagtggaaatggaatactgaccatga Alignment from Exonerate_protein2genome GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG tccttatgcaattaatcaatatgagaggctgtaattttggggctgttcagGTCAGCCAGTCTAAAGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCTTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATGgcaagttggtcacatgcatggacttagtggaaatggaatactgaccatga Alignment from Exonerate_coding2genome tccttatgcaattaatcaatatgagaggctgtaattttggggctgttcaggtcagccagtctaaagagcatcagcagttcatcccctctcttcagaggcttctgggacccctattggaagcttacagctctggtgtcatttttgtccataacttcagtgggcctgtacctgaatccgagtaccaaaagcttcataggtaccttatctcacggacagaaaggaatattgctgtgtatggcaagttggtcacatgcatggacttagtggaaatggaatactgaccatga Alignment from GeneWise GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACGCTGAGAGT tccttatgcaattaatcaatatgagaggctgtaattttggggctgttcagGTCAGCCAGTCTAAAGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCTTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATGGCAAGTTGgtcacatgcatggacttagtggaaatggaatactgaccatga #### Gpam_ID11534_15 --> 2 - 0 Original Alignment ctTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG agtactggcagccctagtaagtcttccccttgttttcttttatattatagctTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGAGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACTATTTCATTAgtgagtgaatgaaacaggactgggggtttcaagcctcttcatgatggggt Alignment from CESAR ctTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG agtactggcagccctagtaagtcttccccttgttttcttttatattatagctTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGAGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACTATTTCATTAgtgagtgaatgaaacaggactgggggtttcaagcctcttcatgatggggt Alignment from Spaln_aa2Genome CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG agtactggcagccctagtaagtcttccccttgttttcttttatattatagCTTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGAGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACTATTTCATTAgtgagtgaatgaaacaggactgggggtttcaagcctcttcatgatggggt Alignment from Spaln_nt2Genome CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG agtactggcagccctagtaagtcttccccttgttttcttttatattatagCTTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGAGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACTATTTCATTAgtgagtgaatgaaacaggactgggggtttcaagcctcttcatgatggggt Alignment from Pairagon CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG agtactggcagccctagtaagtcttccccttgttttcttttatattatagCTTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGAGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACTATTTCATTAgtgagtgaatgaaacaggactgggggtttcaagcctcttcatgatggggt Alignment from Exonerate_protein2genome CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG agtactggcagccctagtaagtcttccccttgttttcttttatattatagCTTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGAGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACTATTTCATTAgtgagtgaatgaaacaggactgggggtttcaagcctcttcatgatggggt Alignment from Exonerate_coding2genome agtactggcagccctagtaagtcttccccttgttttcttttatattatagcttgcagtgtatacacagtcctaaataagagatgctcagggggttttgctggaggacttggcaacctcatcagccaggaacacctagtaaaaaaggccaccagcttgtgctacctactttctaatgaaggaactatttcattagtgagtgaatgaaacaggactgggggtttcaagcctcttcatgatggggt Alignment from GeneWise CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG agtactggcagccctagtaagtcttccccttgttttcttttatattatagCTTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGAGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACTATTTCATTAgtgagtgaatgaaacaggactgggggtttcaagcctcttcatgatggggt #### Gpam_ID11536_13 --> 2 - 0 Original Alignment ccGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaaggggtaactttgtctcgtaacatccccttttctccttgctttccagcaGCCAGTAAGCCTGGGGCTATCATGTCAACCCACATCATTGCCTGTCTACTCCTATACAAACACAGACAGgtaggtcttacatttaattggtagataagtggaggtcaccacgttcatta Alignment from CESAR ccGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaaggggtaactttgtctcgtaacatccccttttctccttgctttccagcaGCCAGTAAGCCTGGGGCTATCATGTCAACCCACATCATTGCCTGTCTACTCCTATACAAACACAGACAGgtaggtcttacatttaattggtagataagtggaggtcaccacgttcatta Alignment from Spaln_aa2Genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaaggggtaactttgtctcgtaacatccccttttctccttgctttccagCAGCCAGTAAGCCTGGGGCTATCATGTCAACCCACATCATTGCCTGTCTACTCCTATACAAACACAGACAGgtaggtcttacatttaattggtagataagtggaggtcaccacgttcatta Alignment from Spaln_nt2Genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaaggggtaactttgtctcgtaacatccccttttctccttgctttccagCAGCCAGTAAGCCTGGGGCTATCATGTCAACCCACATCATTGCCTGTCTACTCCTATACAAACACAGACAGgtaggtcttacatttaattggtagataagtggaggtcaccacgttcatta Alignment from Pairagon CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaaggggtaactttgtctcgtaacatccccttttctccttgctttccagCAGCCAGTAAGCCTGGGGCTATCATGTCAACCCACATCATTGCCTGTCTACTCCTATACAAACACAGACAGgtaggtcttacatttaattggtagataagtggaggtcaccacgttcatta Alignment from Exonerate_protein2genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaaggggtaactttgtctcgtaacatccccttttctccttgctttccagCAGCCAGTAAGCCTGGGGCTATCATGTCAACCCACATCATTGCCTGTCTACTCCTATACAAACACAGACAGgtaggtcttacatttaattggtagataagtggaggtcaccacgttcatta Alignment from Exonerate_coding2genome gaaaggggtaactttgtctcgtaacatccccttttctccttgctttccagcagccagtaagcctggggctatcatgtcaacccacatcattgcctgtctactcctatacaaacacagacaggtaggtcttacatttaattggtagataagtggaggtcaccacgttcatta Alignment from GeneWise CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaaggggtaactttgtctcgtaacatccccttttctccttgctttccagCAGCCAGTAAGCCTGGGGCTATCATGTCAACCCACATCATTGCCTGTCTACTCCTATACAAACACAGACAGgtaggtcttacatttaattggtagataagtggaggtcaccacgttcatta #### Gpam_ID11540_9 --> 0 - 0 Original Alignment CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcacagttggtagttccatctctgctctgtttgtcccttctctgcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAGGGGAGTCCCTCTTGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGTTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGTATATCCTATGACTGTATAATCGAAGGCCACTATAATAGTGAACAGTTAgtacgtaattgtatacaatggaatgacaacatttaaacatgggtatgctg Alignment from CESAR CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcacagttggtagttccatctctgctctgtttgtcccttctctgcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAGGGGAGTCCCTCTTGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGTTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGTATATCCTATGACTGTATAATCGAAGGCCACTATAATAGTGAACAGTTAgtacgtaattgtatacaatggaatgacaacatttaaacatgggtatgctg Alignment from Spaln_aa2Genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcacagttggtagttccatctctgctctgtttgtcccttctctgcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAGGGGAGTCCCTCTTGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGTTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGTATATCCTATGACTGTATAATCGAAGGCCACTATAATAGTGAACAGTTAgtacgtaattgtatacaatggaatgacaacatttaaacatgggtatgctg Alignment from Spaln_nt2Genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATCTTC---CTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcacagttggtagttccatctctgctctgtttgtcccttctctgcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAGGGGAGTCCCTCTTGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGTTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGTATATCCTATGACTGTATAATCGAAGGCCACTATAATAGTGAACAGTTAgtacgtaattgtatacaatggaatgacaacatttaaacatgggtatgctg Alignment from Pairagon CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGA---TCTTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcacagttggtagttccatctctgctctgtttgtcccttctctgcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAGGGGAGTCCCTCTTGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGTTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGTATATCCTATGACTGTATAATCGAAGGCCACTATAATAGTGAACAGTTAgtacgtaattgtatacaatggaatgacaacatttaaacatgggtatgctg Alignment from Exonerate_protein2genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcacagttggtagttccatctctgctctgtttgtcccttctctgcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAGGGGAGTCCCTCTTGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGTTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGTATATCCTATGACTGTATAATCGAAGGCCACTATAATAGTGAACAGTTAgtacgtaattgtatacaatggaatgacaacatttaaacatgggtatgctg Alignment from Exonerate_coding2genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcacagttggtagttccatctctgctctgtttgtcccttctctgcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAGGGGAGTCCCTCTTGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGTTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGTATATCCTATGACTGTATAATCGAAGGCCACTATAATAGTGAACAGTTAgtacgtaattgtatacaatggaatgacaacatttaaacatgggtatgctg Alignment from GeneWise CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcacagttggtagttccatctctgctctgtttgtcccttctctgcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAGGGGAGTCCCTCTTGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGTTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGTATATCCTATGACTGTATAATCGAAGGCCACTATAATAGTGAACAGTTAgtacgtaattgtatacaatggaatgacaacatttaaacatgggtatgctg #### Gpam_ID11543_6 --> 1 - 0 Original Alignment gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG aatagtgcacccactctctggttcaccaagcctccctcctgtctgctcaggTTGACTGGCTGGGTATTACTAAAGCTTTTCAACTGCTTCTTCTGGAACATACAGATCCACAAGGGCCAATTAGAGATGGTCAAAGCTGCCACCGAGgtgagatccatacttatatgcagtcccacaacttaaatgggatcaactgc Alignment from CESAR gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG aatagtgcacccactctctggttcaccaagcctccctcctgtctgctcaggTTGACTGGCTGGGTATTACTAAAGCTTTTCAACTGCTTCTTCTGGAACATACAGATCCACAAGGGCCAATTAGAGATGGTCAAAGCTGCCACCGAGgtgagatccatacttatatgcagtcccacaacttaaatgggatcaactgc Alignment from Spaln_aa2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG aatagtgcacccactctctggttcaccaagcctccctcctgtctgctcagGTTGACTGGCTGGGTATTACTAAAGCTTTTCAACTGCTTCTTCTGGAACATACAGATCCACAAGGGCCAATTAGAGATGGTCAAAGCTGCCACCGAGgtgagatccatacttatatgcagtcccacaacttaaatgggatcaactgc Alignment from Spaln_nt2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG aatagtgcacccactctctggttcaccaagcctccctcctgtctgctcagGTTGACTGGCTGGGTATTACTAAAGCTTTTCAACTGCTTCTTCTGGAACATACAGATCCACAAGGGCCAATTAGAGATGGTCAAAGCTGCCACCGAGgtgagatccatacttatatgcagtcccacaacttaaatgggatcaactgc Alignment from Pairagon GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG aatagtgcacccactctctggttcaccaagcctccctcctgtctgctcagGTTGACTGGCTGGGTATTACTAAAGCTTTTCAACTGCTTCTTCTGGAACATACAGATCCACAAGGGCCAATTAGAGATGGTCAAAGCTGCCACCGAGgtgagatccatacttatatgcagtcccacaacttaaatgggatcaactgc Alignment from Exonerate_protein2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG aatagtgcacccactctctggttcaccaagcctccctcctgtctgctcagGTTGACTGGCTGGGTATTACTAAAGCTTTTCAACTGCTTCTTCTGGAACATACAGATCCACAAGGGCCAATTAGAGATGGTCAAAGCTGCCACCGAGgtgagatccatacttatatgcagtcccacaacttaaatgggatcaactgc Alignment from Exonerate_coding2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG aatagtgcacccactctctggttcaccaagcctccctcctgtctgctcagGTTGACTGGCTGGGTATTACTAAAGCTTTTCAACTGCTTCTTCTGGAACATACAGATCCACAAGGGCCAATTAGAGATGGTCAAAGCTGCCACCGAGgtgagatccatacttatatgcagtcccacaacttaaatgggatcaactgc Alignment from GeneWise GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG aatagtgcacccactctctggttcaccaagcctccctcctgtctgctcagGTTGACTGGCTGGGTATTACTAAAGCTTTTCAACTGCTTCTTCTGGAACATACAGATCCACAAGGGCCAATTAGAGATGGTCAAAGCTGCCACCGAGgtgagatccatacttatatgcagtcccacaacttaaatgggatcaactgc #### Grk5_ID13388_2 --> 2 - 1 Original Alignment ggGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAg taagataagccttgaatcctacccttttatctttgtctcttggctttcagggGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAggttaatataaaatgccttatttgtcaagcccttatctaccatgggaactg Alignment from CESAR ggGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAg taagataagccttgaatcctacccttttatctttgtctcttggctttcagggGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAggttaatataaaatgccttatttgtcaagcccttatctaccatgggaactg Alignment from Spaln_aa2Genome GGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG taagataagccttgaatcctacccttttatctttgtctcttggctttcagGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgttaatataaaatgccttatttgtcaagcccttatctaccatgggaactg Alignment from Spaln_nt2Genome GGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG taagataagccttgaatcctacccttttatctttgtctcttggctttcagGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgttaatataaaatgccttatttgtcaagcccttatctaccatgggaactg Alignment from Pairagon GGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG taagataagccttgaatcctacccttttatctttgtctcttggctttcagGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgttaatataaaatgccttatttgtcaagcccttatctaccatgggaactg Alignment from Exonerate_protein2genome GGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG taagataagccttgaatcctacccttttatctttgtctcttggctttcagGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgttaatataaaatgccttatttgtcaagcccttatctaccatgggaactg Alignment from Exonerate_coding2genome GAAGGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG taagataagccttgaatcctacccttttatctttgtctcttggcttTCAGGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgttaatataaaatgccttatttgtcaagcccttatctaccatgggaactg Alignment from GeneWise GGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG taagataagccttgaatcctacccttttatctttgtctcttggctttcagGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgttaatataaaatgccttatttgtcaagcccttatctaccatgggaactg #### Grk5_ID13403_4 --> 0 - 0 Original Alignment GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgtatattccaacactggtagtaaaactatctctttcttgatccccagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtaacttatcaaaaactacttaatgcagtgtgttgacagcctatgctgtg Alignment from CESAR GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgtatattccaacactggtagtaaaactatctctttcttgatccccagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtaacttatcaaaaactacttaatgcagtgtgttgacagcctatgctgtg Alignment from Spaln_aa2Genome GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgtatattccaacactggtagtaaaactatctctttcttgatccccagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtaacttatcaaaaactacttaatgcagtgtgttgacagcctatgctgtg Alignment from Spaln_nt2Genome GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgtatattccaacactggtagtaaaactatctctttcttgatccccagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtaacttatcaaaaactacttaatgcagtgtgttgacagcctatgctgtg Alignment from Pairagon GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgtatattccaacactggtagtaaaactatctctttcttgatccccagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtaacttatcaaaaactacttaatgcagtgtgttgacagcctatgctgtg Alignment from Exonerate_protein2genome GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgtatattccaacactggtagtaaaactatctctttcttgatccccagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtaacttatcaaaaactacttaatgcagtgtgttgacagcctatgctgtg Alignment from Exonerate_coding2genome GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgtatattccaacactggtagtaaaactatctctttcttgatccccagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtaacttatcaaaaactacttaatgcagtgtgttgacagcctatgctgtg Alignment from GeneWise GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgtatattccaacactggtagtaaaactatctctttcttgatccccagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtaacttatcaaaaactacttaatgcagtgtgttgacagcctatgctgtg #### Grk5_ID13414_8 --> 0 - 0 Original Alignment GTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCTTAGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAACGAAAAGCAGATTCTTGAGAAGGTCAACAGCCAGTTTGTG gcccccaacatgtttttgattggggaggattttgtaaaattctatttcagGTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCCTGGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAATGAAAAGCAGATTCTCGAGAAGGTCAACAGCCAGTTTGTGgtaagactaactgtgcgaaattaggtctcttaagcagaccatcctgttta Alignment from CESAR GTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCTTAGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAACGAAAAGCAGATTCTTGAGAAGGTCAACAGCCAGTTTGTG gcccccaacatgtttttgattggggaggattttgtaaaattctatttcagGTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCCTGGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAATGAAAAGCAGATTCTCGAGAAGGTCAACAGCCAGTTTGTGgtaagactaactgtgcgaaattaggtctcttaagcagaccatcctgttta Alignment from Spaln_aa2Genome GTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCTTAGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAACGAAAAGCAGATTCTTGAGAAGGTCAACAGCCAGTTTGTG gcccccaacatgtttttgattggggaggattttgtaaaattctatttcagGTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCCTGGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAATGAAAAGCAGATTCTCGAGAAGGTCAACAGCCAGTTTGTGgtaagactaactgtgcgaaattaggtctcttaagcagaccatcctgttta Alignment from Spaln_nt2Genome GTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCTTAGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAACGAAAAGCAGATTCTTGAGAAGGTCAACAGCCAGTTTGTG gcccccaacatgtttttgattggggaggattttgtaaaattctatttcagGTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCCTGGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAATGAAAAGCAGATTCTCGAGAAGGTCAACAGCCAGTTTGTGgtaagactaactgtgcgaaattaggtctcttaagcagaccatcctgttta Alignment from Pairagon GTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCTTAGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAACGAAAAGCAGATTCTTGAGAAGGTCAACAGCCAGTTTGTG gcccccaacatgtttttgattggggaggattttgtaaaattctatttcagGTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCCTGGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAATGAAAAGCAGATTCTCGAGAAGGTCAACAGCCAGTTTGTGgtaagactaactgtgcgaaattaggtctcttaagcagaccatcctgttta Alignment from Exonerate_protein2genome GTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCTTAGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAACGAAAAGCAGATTCTTGAGAAGGTCAACAGCCAGTTTGTG gcccccaacatgtttttgattggggaggattttgtaaaattctatttcagGTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCCTGGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAATGAAAAGCAGATTCTCGAGAAGGTCAACAGCCAGTTTGTGgtaagactaactgtgcgaaattaggtctcttaagcagaccatcctgttta Alignment from Exonerate_coding2genome GTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCTTAGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAACGAAAAGCAGATTCTTGAGAAGGTCAACAGCCAGTTTGTG gcccccaacatgtttttgattggggaggattttgtaaaattctatttcagGTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCCTGGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAATGAAAAGCAGATTCTCGAGAAGGTCAACAGCCAGTTTGTGgtaagactaactgtgcgaaattaggtctcttaagcagaccatcctgttta Alignment from GeneWise GTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCTTAGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAACGAAAAGCAGATTCTTGAGAAGGTCAACAGCCAGTTTGTG gcccccaacatgtttttgattggggaggattttgtaaaattctatttcagGTCTGTGCCTGCCAGGTTCGGGCCACTGGTAAAATGTATGCTTGTAAACGCCTGGAGAAGAAGAGGATCAAAAAGAGGAAAGGCGAATCCATGGCACTCAATGAAAAGCAGATTCTCGAGAAGGTCAACAGCCAGTTTGTGgtaagactaactgtgcgaaattaggtctcttaagcagaccatcctgttta #### Grk5_ID13416_10 --> 1 - 1 Original Alignment aGATCTAAAACCCGAAAACATCTTGCTGGATGATTATg ctacagagtgaggatcagtgagatttagtcttcctgtgcctcccccgcagaGATGTGAAACCTGAAAACATTTTGCTGGAT---TACggtgggtcaaaatttgaaagtttcttctattcgaactctgagtgagcaaca Alignment from CESAR aGATCTAAAACCCGAAAACATCTTGCTGGATGATTATg ctacagagtgaggatcagtgagatttagtcttcctgtgcctcccccgcagaGATGTGAAACCTGAAAACATTTTGCTG---GATTACggtgggtcaaaatttgaaagtttcttctattcgaactctgagtgagcaaca Alignment from Spaln_aa2Genome AGATCTAAAACCCGAAAACATCTTGCTGGATGATTATG ctacagagtgaggatcagtgagatttagtcttcctgtgcctcccccgcagAGATGTGAAACCTGAAAACATTTTGCTG---GATTACGgtgggtcaaaatttgaaagtttcttctattcgaactctgagtgagcaaca Alignment from Spaln_nt2Genome AGATCTAAAACCCGAAAACATCTTGCTGGATGATTATG ctacagagtgaggatcagtgagatttagtcttcctgtgcctcccccgcagAGATGTGAAACCTGAAAACATTTTGCTG---GATTACGgtgggtcaaaatttgaaagtttcttctattcgaactctgagtgagcaaca Alignment from Pairagon AGATCTAAAACCCGAAAACATCTTGCTGGATGATTATG ctacagagtgaggatcagtgagatttagtcttcctgtgcctcccccgcagAGATGTGAAACCTGAAAACATTTTGCTG---GATTACGgtgggtcaaaatttgaaagtttcttctattcgaactctgagtgagcaaca Alignment from Exonerate_protein2genome AGATCTAAAACCCGAAAACATCTTGCTGGATGATTATG ctacagagtgaggatcagtgagatttagtcttcctgtgcctcccccgcagAGATGTGAAACCTGAAAACATTTTGCTG---GATTACGgtgggtcaaaatttgaaagtttcttctattcgaactctgagtgagcaaca Alignment from Exonerate_coding2genome ctacagagtgaggatcagtgagatttagtcttcctgtgcctcccccgcagagatgtgaaacctgaaaacattttgctggattacggtgggtcaaaatttgaaagtttcttctattcgaactctgagtgagcaaca Alignment from GeneWise ctacagagtgaggatcagtgagatttagtcttcctgtgcctcccccgcagagatgtgaaacctgaaaacattttgctggattacggtgggtcaaaatttgaaagtttcttctattcgaactctgagtgagcaaca #### Gucy2g_ID11573_18 --> 0 - 1 Original Alignment GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAg ctcataggtgcagctaaacaggaaggagaaaagtccatctcttttatcagATAGAAACTATTGGAGATGCACACATGGTGGCCAGCAGTCTTCCTATCCGCAATGGTGCCCAGCATGCTGACACGATGATTGTTACCATGGCCCTGCATCTGCTATGTGTCACAACCCACTTCCAGATTGGTCACATGCCAGAAGAGAGCCTCAAGCTCAGCATAGGCCTCCACCCAggtgagcagcttcattactgtgggtagttaccacacactgccgacctatca Alignment from CESAR GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAg ctcataggtgcagctaaacaggaaggagaaaagtccatctcttttatcagATAGAAACTATTGGAGATGCACACATGGTGGCCAGCAGTCTTCCTATCCGCAATGGTGCCCAGCATGCTGACACGATGATTGTTACCATGGCCCTGCATCTGCTATGTGTCACAACCCACTTCCAGATTGGTCACATGCCAGAAGAGAGCCTCAAGCTCAGCATAGGCCTCCACCCAggtgagcagcttcattactgtgggtagttaccacacactgccgacctatca Alignment from Spaln_aa2Genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG ctcataggtgcagctaaacaggaaggagaaaagtccatctcttttatcagATAGAAACTATTGGAGATGCACACATGGTGGCCAGCAGTCTTCCTATCCGCAATGGTGCCCAGCATGCTGACACGATGATTGTTACCATGGCCCTGCATCTGCTATGTGTCACAACCCACTTCCAGATTGGTCACATGCCAGAAGAGAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagcagcttcattactgtgggtagttaccacacactgccgacctatca Alignment from Spaln_nt2Genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGAC--GA-GATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG ctcataggtgcagctaaacaggaaggagaaaagtccatctcttttatcagATAGAAACTATTGGAGATGCACACATGGTGGCCAGCAGTCTTCCTATCCGCAATGGTGCCCAGCATGCTGACACGATGATTGTTACCATGGCCCTGCATCTGCTATGTGTCACAACCCACTTCCAGATTGGTCACATGCCAGAAGAGAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagcagcttcattactgtgggtagttaccacacactgccgacctatca Alignment from Pairagon GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGA---GATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG ctcataggtgcagctaaacaggaaggagaaaagtccatctcttttatcagATAGAAACTATTGGAGATGCACACATGGTGGCCAGCAGTCTTCCTATCCGCAATGGTGCCCAGCATGCTGACACGATGATTGTTACCATGGCCCTGCATCTGCTATGTGTCACAACCCACTTCCAGATTGGTCACATGCCAGAAGAGAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagcagcttcattactgtgggtagttaccacacactgccgacctatca Alignment from Exonerate_protein2genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG ctcataggtgcagctaaacaggaaggagaaaagtccatctcttttatcagATAGAAACTATTGGAGATGCACACATGGTGGCCAGCAGTCTTCCTATCCGCAATGGTGCCCAGCATGCTGACACGATGATTGTTACCATGGCCCTGCATCTGCTATGTGTCACAACCCACTTCCAGATTGGTCACATGCCAGAAGAGAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagcagcttcattactgtgggtagttaccacacactgccgacctatca Alignment from Exonerate_coding2genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG ctcataggtgcagctaaacaggaaggagaaaagtccatctcttttatcagATAGAAACTATTGGAGATGCACACATGGTGGCCAGCAGTCTTCCTATCCGCAATGGTGCCCAGCATGCTGACACGATGATTGTTACCATGGCCCTGCATCTGCTATGTGTCACAACCCACTTCCAGATTGGTCACATGCCAGAAGAGAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagcagcttcattactgtgggtagttaccacacactgccgacctatca Alignment from GeneWise GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG ctcataggtgcagctaaacaggaaggagaaaagtccatctcttttatcagATAGAAACTATTGGAGATGCACACATGGTGGCCAGCAGTCTTCCTATCCGCAATGGTGCCCAGCATGCTGACACGATGATTGTTACCATGGCCCTGCATCTGCTATGTGTCACAACCCACTTCCAGATTGGTCACATGCCAGAAGAGAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagcagcttcattactgtgggtagttaccacacactgccgacctatca #### Gucy2g_ID11578_13 --> 0 - 1 Original Alignment GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAg gtgcacctgtactccactacctttgttgccacttctttcttctcttgcagGGCTTGCTATTCCCCCATGGGAGCCCACTGAGGTCTCATAGCAATTTGAAACTATCAAACTGTCTGGTTTATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGCACATGGAGGAGTTACAACCAGGAGGCTACTGACCATTCAggtcagttttgctagaaataagaatgaaagtctgattgccccactgctgag Alignment from CESAR GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAg gtgcacctgtactccactacctttgttgccacttctttcttctcttgcagGGCTTGCTATTCCCCCATGGGAGCCCACTGAGGTCTCATAGCAATTTGAAACTATCAAACTGTCTGGTTTATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGCACATGGAGGAGTTACAACCAGGAGGCTACTGACCATTCAggtcagttttgctagaaataagaatgaaagtctgattgccccactgctgag Alignment from Spaln_aa2Genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtactccactacctttgttgccacttctttcttctcttgcagGGCTTGCTATTCCCCCATGGGAGCCCACTGAGGTCTCATAGCAATTTGAAACTATCAAACTGTCTGGTTTATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGCACATGGAGGAGTTACAACCAGGAGGCTACTGACCATTCAGgtcagttttgctagaaataagaatgaaagtctgattgccccactgctgag Alignment from Spaln_nt2Genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtactccactacctttgttgccacttctttcttctcttgcagGGCTTGCTATTCCCCCATGGGAGCCCACTGAGGTCTCATAGCAATTTGAAACTATCAAACTGTCTGGTTTATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGCACATGGAGGAGTTACAACCAGGAGGCTACTGACCATTCAGgtcagttttgctagaaataagaatgaaagtctgattgccccactgctgag Alignment from Pairagon GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtactccactacctttgttgccacttctttcttctcttgcagGGCTTGCTATTCCCCCATGGGAGCCCACTGAGGTCTCATAGCAATTTGAAACTATCAAACTGTCTGGTTTATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGCACATGGAGGAGTTACAACCAGGAGGCTACTGACCATTCAGgtcagttttgctagaaataagaatgaaagtctgattgccccactgctgag Alignment from Exonerate_protein2genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtactccactacctttgttgccacttctttcttctcttgcagGGCTTGCTATTCCCCCATGGGAGCCCACTGAGGTCTCATAGCAATTTGAAACTATCAAACTGTCTGGTTTATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGCACATGGAGGAGTTACAACCAGGAGGCTACTGACCATTCAGgtcagttttgctagaaataagaatgaaagtctgattgccccactgctgag Alignment from Exonerate_coding2genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtactccactacctttgttgccacttctttcttctcttgcagGGCTTGCTATTCCCCCATGGGAGCCCACTGAGGTCTCATAGCAATTTGAAACTATCAAACTGTCTGGTTTATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGCACATGGAGGAGTTACAACCAGGAGGCTACTGACCATTCAGgtcagttttgctagaaataagaatgaaagtctgattgccccactgctgag Alignment from GeneWise GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtactccactacctttgttgccacttctttcttctcttgcagGGCTTGCTATTCCCCCATGGGAGCCCACTGAGGTCTCATAGCAATTTGAAACTATCAAACTGTCTGGTTTATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGCACATGGAGGAGTTACAACCAGGAGGCTACTGACCATTCAGgtcagttttgctagaaataagaatgaaagtctgattgccccactgctgag #### Gucy2g_ID11579_12 --> 0 - 0 Original Alignment GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT actctaaactagctttgatcatggagtgttgattatcgcctcccgtttagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCCTATGACATAGTCAACgtgagtttctcactgtactctgccatgtgtctggttacaccctccccatg Alignment from CESAR GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT actctaaactagctttgatcatggagtgttgattatcgcctcccgtttagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCCTATGACATAGTCAACgtgagtttctcactgtactctgccatgtgtctggttacaccctccccatg Alignment from Spaln_aa2Genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT actctaaactagctttgatcatggagtgttgattatcgcctcccgtttagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCCTATGACATAGTCAACgtgagtttctcactgtactctgccatgtgtctggttacaccctccccatg Alignment from Spaln_nt2Genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT actctaaactagctttgatcatggagtgttgattatcgcctcccgtttagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCCTATGACATAGTCAACgtgagtttctcactgtactctgccatgtgtctggttacaccctccccatg Alignment from Pairagon GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT actctaaactagctttgatcatggagtgttgattatcgcctcccgtttagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCCTATGACATAGTCAACgtgagtttctcactgtactctgccatgtgtctggttacaccctccccatg Alignment from Exonerate_protein2genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT actctaaactagctttgatcatggagtgttgattatcgcctcccgtttagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCCTATGACATAGTCAACgtgagtttctcactgtactctgccatgtgtctggttacaccctccccatg Alignment from Exonerate_coding2genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT actctaaactagctttgatcatggagtgttgattatcgcctcccgtttagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCCTATGACATAGTCAACgtgagtttctcactgtactctgccatgtgtctggttacaccctccccatg Alignment from GeneWise GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT actctaaactagctttgatcatggagtgttgattatcgcctcccgtttagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCCTATGACATAGTCAACgtgagtttctcactgtactctgccatgtgtctggttacaccctccccatg #### Gucy2g_ID11580_11 --> 0 - 0 Original Alignment ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattctgactgcatagaatagattaatttgtgctgtccttatcctgcagATGTGTGAATTGAAGCATGAAAACATAGTCCCTTTGTTTGGTGTCTGCACAGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgagtagatatcctgtgccaaataagttggcattagttgagataggtgg Alignment from CESAR ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattctgactgcatagaatagattaatttgtgctgtccttatcctgcagATGTGTGAATTGAAGCATGAAAACATAGTCCCTTTGTTTGGTGTCTGCACAGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgagtagatatcctgtgccaaataagttggcattagttgagataggtgg Alignment from Spaln_aa2Genome ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattctgactgcatagaatagattaatttgtgctgtccttatcctgcagATGTGTGAATTGAAGCATGAAAACATAGTCCCTTTGTTTGGTGTCTGCACAGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgagtagatatcctgtgccaaataagttggcattagttgagataggtgg Alignment from Spaln_nt2Genome ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattctgactgcatagaatagattaatttgtgctgtccttatcctgcagATGTGTGAATTGAAGCATGAAAACATAGTCCCTTTGTTTGGTGTCTGCACAGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgagtagatatcctgtgccaaataagttggcattagttgagataggtgg Alignment from Pairagon ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattctgactgcatagaatagattaatttgtgctgtccttatcctgcagATGTGTGAATTGAAGCATGAAAACATAGTCCCTTTGTTTGGTGTCTGCACAGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgagtagatatcctgtgccaaataagttggcattagttgagataggtgg Alignment from Exonerate_protein2genome ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattctgactgcatagaatagattaatttgtgctgtccttatcctgcagATGTGTGAATTGAAGCATGAAAACATAGTCCCTTTGTTTGGTGTCTGCACAGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgagtagatatcctgtgccaaataagttggcattagttgagataggtgg Alignment from Exonerate_coding2genome ggattctgactgcatagaatagattaatttgtgctgtccttatcctgcagatgtgtgaattgaagcatgaaaacatagtccctttgtttggtgtctgcacagaacctccaaacatatgcattattacacaatactgcaagaagggaagtctcaaggtgagtagatatcctgtgccaaataagttggcattagttgagataggtgg Alignment from GeneWise ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattctgactgcatagaatagattaatttgtgctgtccttatcctgcagATGTGTGAATTGAAGCATGAAAACATAGTCCCTTTGTTTGGTGTCTGCACAGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgagtagatatcctgtgccaaataagttggcattagttgagataggtgg #### Gucy2g_ID11583_8 --> 2 - 0 Original Alignment gtATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA tgatataggcaggcatacaggcagggatcctctgcctcttcatcttctaggcATGACAGTAAATGTGGCAGCTGTGATACCAACTGTAACATTCCTAGTTCTAGTATCAGGAGCTACTATAACAGGCCTAATGCTCTGGTGGCTGAGAGAAAAAGCGCAAAGCCATCTTGGGGACACTTGGTGGCAAGTCCACTATTTCAGTGTAACGCTGTCACCTCAACACAAAgtgagtactcagttagacagcatttcatgacttccttaaggtgccttaaa Alignment from CESAR gtATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA tgatataggcaggcatacaggcagggatcctctgcctcttcatcttctaggcATGACAGTAAATGTGGCAGCTGTGATACCAACTGTAACATTCCTAGTTCTAGTATCAGGAGCTACTATAACAGGCCTAATGCTCTGGTGGCTGAGAGAAAAAGCGCAAAGCCATCTTGGGGACACTTGGTGGCAAGTCCACTATTTCAGTGTAACGCTGTCACCTCAACACAAAgtgagtactcagttagacagcatttcatgacttccttaaggtgccttaaa Alignment from Spaln_aa2Genome GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA tgatataggcaggcatacaggcagggatcctctgcctcttcatcttctagGCATGACAGTAAATGTGGCAGCTGTGATACCAACTGTAACATTCCTAGTTCTAGTATCAGGAGCTACTATAACAGGCCTAATGCTCTGGTGGCTGAGAGAAAAAGCGCAAAGCCATCTTGGGGACACTTGGTGGCAAGTCCACTATTTCAGTGTAACGCTGTCACCTCAACACAAAgtgagtactcagttagacagcatttcatgacttccttaaggtgccttaaa Alignment from Spaln_nt2Genome GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA tgatataggcaggcatacaggcagggatcctctgcctcttcatcttctagGCATGACAGTAAATGTGGCAGCTGTGATACCAACTGTAACATTCCTAGTTCTAGTATCAGGAGCTACTATAACAGGCCTAATGCTCTGGTGGCTGAGAGAAAAAGCGCAAAGCCATCTTGGGGACACTTGGTGGCAAGTCCACTATTTCAGTGTAACGCTGTCACCTCAACACAAAgtgagtactcagttagacagcatttcatgacttccttaaggtgccttaaa Alignment from Pairagon GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA tgatataggcaggcatacaggcagggatcctctgcctcttcatcttctagGCATGACAGTAAATGTGGCAGCTGTGATACCAACTGTAACATTCCTAGTTCTAGTATCAGGAGCTACTATAACAGGCCTAATGCTCTGGTGGCTGAGAGAAAAAGCGCAAAGCCATCTTGGGGACACTTGGTGGCAAGTCCACTATTTCAGTGTAACGCTGTCACCTCAACACAAAgtgagtactcagttagacagcatttcatgacttccttaaggtgccttaaa Alignment from Exonerate_protein2genome GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA tgatataggcaggcatacaggcagggatcctctgcctcttcatcttctagGCATGACAGTAAATGTGGCAGCTGTGATACCAACTGTAACATTCCTAGTTCTAGTATCAGGAGCTACTATAACAGGCCTAATGCTCTGGTGGCTGAGAGAAAAAGCGCAAAGCCATCTTGGGGACACTTGGTGGCAAGTCCACTATTTCAGTGTAACGCTGTCACCTCAACACAAAgtgagtactcagttagacagcatttcatgacttccttaaggtgccttaaa Alignment from Exonerate_coding2genome tgatataggcaggcatacaggcagggatcctctgcctcttcatcttctaggcatgacagtaaatgtggcagctgtgataccaactgtaacattcctagttctagtatcaggagctactataacaggcctaatgctctggtggctgagagaaaaagcgcaaagccatcttggggacacttggtggcaagtccactatttcagtgtaacgctgtcacctcaacacaaagtgagtactcagttagacagcatttcatgacttccttaaggtgccttaaa Alignment from GeneWise GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA tgatataggcaggcatacaggcagggatcctctgcctcttcatcttctagGCATGACAGTAAATGTGGCAGCTGTGATACCAACTGTAACATTCCTAGTTCTAGTATCAGGAGCTACTATAACAGGCCTAATGCTCTGGTGGCTGAGAGAAAAAGCGCAAAGCCATCTTGGGGACACTTGGTGGCAAGTCCACTATTTCAGTGTAACGCTGTCACCTCAACACAAAgtgagtactcagttagacagcatttcatgacttccttaaggtgccttaaa #### Gucy2g_ID11584_7 --> 1 - 1 Original Alignment aCCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAg caacagacagaataagagtctcctaatagctacctgtccgtcgcccccaggCCCTGGAGAAATGAATCAAACACCTCCTGGCCCCATGGCTCATTACCTGATTACAAACCTGGCTGTGGATTTTTTAATGGACTATGTATAACAAAGACACCCACAGTAACAggtaagtctacctaatcacactttaaaatgcaaaatatctttcaagttctg Alignment from CESAR aCCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAg caacagacagaataagagtctcctaatagctacctgtccgtcgcccccaggCCCTGGAGAAATGAATCAAACACCTCCTGGCCCCATGGCTCATTACCTGATTACAAACCTGGCTGTGGATTTTTTAATGGACTATGTATAACAAAGACACCCACAGTAACAggtaagtctacctaatcacactttaaaatgcaaaatatctttcaagttctg Alignment from Spaln_aa2Genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG caacagacagaataagagtctcctaatagctacctgtccgtcgcccccagGCCCTGGAGAAATGAATCAAACACCTCCTGGCCCCATGGCTCATTACCTGATTACAAACCTGGCTGTGGATTTTTTAATGGACTATGTATAACAAAGACACCCACAGTAACAGgtaagtctacctaatcacactttaaaatgcaaaatatctttcaagttctg Alignment from Spaln_nt2Genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG caacagacagaataagagtctcctaatagctacctgtccgtcgcccccagGCCCTGGAGAAATGAATCAAACACCTCCTGGCCCCATGGCTCATTACCTGATTACAAACCTGGCTGTGGATTTTTTAATGGACTATGTATAACAAAGACACCCACAGTAACAGgtaagtctacctaatcacactttaaaatgcaaaatatctttcaagttctg Alignment from Pairagon ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG caacagacagaataagagtctcctaatagctacctgtccgtcgcccccagGCCCTGGAGAAATGAATCAAACACCTCCTGGCCCCATGGCTCATTACCTGATTACAAACCTGGCTGTGGATTTTTTAATGGACTATGTATAACAAAGACACCCACAGTAACAGgtaagtctacctaatcacactttaaaatgcaaaatatctttcaagttctg Alignment from Exonerate_protein2genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG caacagacagaataagagtctcctaatagctacctgtccgtcgcccccagGCCCTGGAGAAATGAATCAAACACCTCCTGGCCCCATGGCTCATTACCTGATTACAAACCTGGCTGTGGATTTTTTAATGGACTATGTATAACAAAGACACCCACAGTAACAGgtaagtctacctaatcacactttaaaatgcaaaatatctttcaagttctg Alignment from Exonerate_coding2genome caacagacagaataagagtctcctaatagctacctgtccgtcgcccccaggccctggagaaatgaatcaaacacctcctggccccatggctcattacctgattacaaacctggctgtggattttttaatggactatgtataacaaagacacccacagtaacaggtaagtctacctaatcacactttaaaatgcaaaatatctttcaagttctg Alignment from GeneWise ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG caacagacagaataagagtctcctaatagctacctgtccgtcgcccccagGCCCTGGAGAAATGAATCAAACACCTCCTGGCCCCATGGCTCATTACCTGATTACAAACCTGGCTGTGGATTTTTTAATGGACTATGTATAACAAAGACACCCACAGTAACAGgtaagtctacctaatcacactttaaaatgcaaaatatctttcaagttctg #### Gucy2g_ID11588_3 --> 2 - 0 Original Alignment tcATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG tgaccctaaaagaggtgtataacaccataatatgtagaatttcttcgtagttATCGTCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAGCTGGAAgtgaggctagtaaacacctgtattaacatgatgctgggaaggcagggtga Alignment from CESAR tcATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG tgaccctaaaagaggtgtataacaccataatatgtagaatttcttcgtagttATCGTCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAGCTGGAAgtgaggctagtaaacacctgtattaacatgatgctgggaaggcagggtga Alignment from Spaln_aa2Genome TCATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG tgaccctaaaagaggtgtataacaccataatatgtagaatttcttcgtagTTATCGTCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAGCTGGAAgtgaggctagtaaacacctgtattaacatgatgctgggaaggcagggtga Alignment from Spaln_nt2Genome TCATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG tgaccctaaaagaggtgtataacaccataatatgtagaatttcttcgtagTTATCGTCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAGCTGGAAgtgaggctagtaaacacctgtattaacatgatgctgggaaggcagggtga Alignment from Pairagon TCATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG tgaccctaaaagaggtgtataacaccataatatgtagaatttcttcgtagTTATCGTCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAGCTGGAAgtgaggctagtaaacacctgtattaacatgatgctgggaaggcagggtga Alignment from Exonerate_protein2genome TCATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG tgaccctaaaagaggtgtataacaccataatatgtagaatttcttcgtagTTATCGTCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAGCTGGAAgtgaggctagtaaacacctgtattaacatgatgctgggaaggcagggtga Alignment from Exonerate_coding2genome tgaccctaaaagaggtgtataacaccataatatgtagaatttcttcgtagttatcgtcttaatctgcagttcagaagacgccaggcacattcttcaggcagcagtagatctagggcttgacactggagattttgtttttattctcttgcagcagctggaagtgaggctagtaaacacctgtattaacatgatgctgggaaggcagggtga Alignment from GeneWise TCATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG tgaccctaaaagaggtgtataacaccataatatgtagaatttcttcgtagTTATCGTCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAGCTGGAAgtgaggctagtaaacacctgtattaacatgatgctgggaaggcagggtga #### Habp2_ID12057_3 --> 2 - 1 Original Alignment atCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTg cccctgtgtttcatgttcatttatctttcctgtgctgcttcgtcctccagatCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGACTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCATGAGTggtgagcatatggttaggcctccacaatgctgctctactgatctgttccaa Alignment from CESAR atCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTg cccctgtgtttcatgttcatttatctttcctgtgctgcttcgtcctccagatCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGACTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCATGAGTggtgagcatatggttaggcctccacaatgctgctctactgatctgttccaa Alignment from Spaln_aa2Genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgtttcatgttcatttatctttcctgtgctgcttcgtcctccagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGACTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCATGAGTGgtgagcatatggttaggcctccacaatgctgctctactgatctgttccaa Alignment from Spaln_nt2Genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgtttcatgttcatttatctttcctgtgctgcttcgtcctccagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGACTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCATGAGTGgtgagcatatggttaggcctccacaatgctgctctactgatctgttccaa Alignment from Pairagon ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgtttcatgttcatttatctttcctgtgctgcttcgtcctccagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGACTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCATGAGTGgtgagcatatggttaggcctccacaatgctgctctactgatctgttccaa Alignment from Exonerate_protein2genome cccctgtgtttcatgttcatttatctttcctgtgctgcttcgtcctccagatctatgccagtccaacccttgtgaacatgggggtgactgtattctcagaggggacacctccacctgtagctgtcccggcccattctcaggaagccgatgcatgagtggtgagcatatggttaggcctccacaatgctgctctactgatctgttccaa Alignment from Exonerate_coding2genome cccctgtgtttcatgttcatttatctttcctgtgctgcttcgtcctccagatctatgccagtccaacccttgtgaacatgggggtgactgtattctcagaggggacacctccacctgtagctgtcccggcccattctcaggaagccgatgcatgagtggtgagcatatggttaggcctccacaatgctgctctactgatctgttccaa Alignment from GeneWise TGGGCTCTCACTGATGTCCTTCATTGCGCCCCCA---------GACCCAGATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG CCCCTGTGTTTCATGTTCATTTATCTTTCCTGTGCTGCTTCGTCCTCCAGATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGACTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCATGAGTGgtgagcatatggttaggcctccacaatgctgctctactgatctgttccaa #### Habp2_ID12065_11 --> 2 - 0 Original Alignment ggGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG ccaccatcccacatatgctatctttatagttgactgggcgtaatttacaggtGAAGGCTCACACCAGCTCTTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATCGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAAGCTGGTTCAGACACTTGCCGAgtaaggacctcatccaaagctcctatatgatggtcatgtcactgggtgca Alignment from CESAR ggGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG ccaccatcccacatatgctatctttatagttgactgggcgtaatttacaggtGAAGGCTCACACCAGCTCTTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATCGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAAGCTGGTTCAGACACTTGCCGAgtaaggacctcatccaaagctcctatatgatggtcatgtcactgggtgca Alignment from Spaln_aa2Genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG ccaccatcccacatatgctatctttatagttgactgggcgtaatttacagGTGAAGGCTCACACCAGCTCTTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATCGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAAGCTGGTTCAGACACTTGCCGAgtaaggacctcatccaaagctcctatatgatggtcatgtcactgggtgca Alignment from Spaln_nt2Genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG ccaccatcccacatatgctatctttatagttgactgggcgtaatttacagGTGAAGGCTCACACCAGCTCTTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATCGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAAGCTGGTTCAGACACTTGCCGAgtaaggacctcatccaaagctcctatatgatggtcatgtcactgggtgca Alignment from Pairagon GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG ccaccatcccacatatgctatctttatagttgactgggcgtaatttacagGTGAAGGCTCACACCAGCTCTTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATCGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAAGCTGGTTCAGACACTTGCCGAgtaaggacctcatccaaagctcctatatgatggtcatgtcactgggtgca Alignment from Exonerate_protein2genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG ccaccatcccacatatgctatctttatagttgactgggcgtaatttacagGTGAAGGCTCACACCAGCTCTTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATCGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAAGCTGGTTCAGACACTTGCCGAgtaaggacctcatccaaagctcctatatgatggtcatgtcactgggtgca Alignment from Exonerate_coding2genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG ccaccatcccacatatgctatctttatagttgactgggcgtaatttacagGTGAAGGCTCACACCAGCTCTTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATCGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAAGCTGGTTCAGACACTTGCCGAgtaaggacctcatccaaagctcctatatgatggtcatgtcactgggtgca Alignment from GeneWise GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG ccaccatcccacatatgctatctttatagttgactgggcgtaatttacagGTGAAGGCTCACACCAGCTCTTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATCGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAAGCTGGTTCAGACACTTGCCGAgtaaggacctcatccaaagctcctatatgatggtcatgtcactgggtgca #### Hectd2_ID7146_4 --> 1 - 0 Original Alignment gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG cctaagtttgcctacctctttttggttctcatcttcttttcttctggtaggGAAGATCTAGAAAAAGCTGAAGCTACAGGGAACTGGAAAGCAGTACATGCTTTCTATATTACGGCATTTGATTCCTTTACAGAGCTAAACACTGCATTTAAGgtgagtatacaaaaaaaagttgcctctcactttttggttgtacacaaaag Alignment from CESAR gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG cctaagtttgcctacctctttttggttctcatcttcttttcttctggtaggGAAGATCTAGAAAAAGCTGAAGCTACAGGGAACTGGAAAGCAGTACATGCTTTCTATATTACGGCATTTGATTCCTTTACAGAGCTAAACACTGCATTTAAGgtgagtatacaaaaaaaagttgcctctcactttttggttgtacacaaaag Alignment from Spaln_aa2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG cctaagtttgcctacctctttttggttctcatcttcttttcttctggtagGGAAGATCTAGAAAAAGCTGAAGCTACAGGGAACTGGAAAGCAGTACATGCTTTCTATATTACGGCATTTGATTCCTTTACAGAGCTAAACACTGCATTTAAGgtgagtatacaaaaaaaagttgcctctcactttttggttgtacacaaaag Alignment from Spaln_nt2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG cctaagtttgcctacctctttttggttctcatcttcttttcttctggtagGGAAGATCTAGAAAAAGCTGAAGCTACAGGGAACTGGAAAGCAGTACATGCTTTCTATATTACGGCATTTGATTCCTTTACAGAGCTAAACACTGCATTTAAGgtgagtatacaaaaaaaagttgcctctcactttttggttgtacacaaaag Alignment from Pairagon GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG cctaagtttgcctacctctttttggttctcatcttcttttcttctggtagGGAAGATCTAGAAAAAGCTGAAGCTACAGGGAACTGGAAAGCAGTACATGCTTTCTATATTACGGCATTTGATTCCTTTACAGAGCTAAACACTGCATTTAAGgtgagtatacaaaaaaaagttgcctctcactttttggttgtacacaaaag Alignment from Exonerate_protein2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG cctaagtttgcctacctctttttggttctcatcttcttttcttctggtagGGAAGATCTAGAAAAAGCTGAAGCTACAGGGAACTGGAAAGCAGTACATGCTTTCTATATTACGGCATTTGATTCCTTTACAGAGCTAAACACTGCATTTAAGgtgagtatacaaaaaaaagttgcctctcactttttggttgtacacaaaag Alignment from Exonerate_coding2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG cctaagtttgcctacctctttttggttctcatcttcttttcttctggtagGGAAGATCTAGAAAAAGCTGAAGCTACAGGGAACTGGAAAGCAGTACATGCTTTCTATATTACGGCATTTGATTCCTTTACAGAGCTAAACACTGCATTTAAGgtgagtatacaaaaaaaagttgcctctcactttttggttgtacacaaaag Alignment from GeneWise GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG cctaagtttgcctacctctttttggttctcatcttcttttcttctggtagGGAAGATCTAGAAAAAGCTGAAGCTACAGGGAACTGGAAAGCAGTACATGCTTTCTATATTACGGCATTTGATTCCTTTACAGAGCTAAACACTGCATTTAAGgtgagtatacaaaaaaaagttgcctctcactttttggttgtacacaaaag #### Hectd2_ID7150_8 --> 0 - 2 Original Alignment AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAaa acacccaatagttaaagtcagttcaactctaacacagtgcttccctttagAACCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAaagtaagtaaacttcttcaggttaactaccactcatagagttttagctatgt Alignment from CESAR AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAaa acacccaatagttaaagtcagttcaactctaacacagtgcttccctttagAACCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAaagtaagtaaacttcttcaggttaactaccactcatagagttttagctatgt Alignment from Spaln_aa2Genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA acacccaatagttaaagtcagttcaactctaacacagtgcttccctttagAACCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaagtaaacttcttcaggttaactaccactcatagagttttagctatgt Alignment from Spaln_nt2Genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA acacccaatagttaaagtcagttcaactctaacacagtgcttccctttagAACCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaagtaaacttcttcaggttaactaccactcatagagttttagctatgt Alignment from Pairagon AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA acacccaatagttaaagtcagttcaactctaacacagtgcttccctttagAACCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaagtaaacttcttcaggttaactaccactcatagagttttagctatgt Alignment from Exonerate_protein2genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA acacccaatagttaaagtcagttcaactctaacacagtgcttccctttagAACCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaagtaaacttcttcaggttaactaccactcatagagttttagctatgt Alignment from Exonerate_coding2genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA acacccaatagttaaagtcagttcaactctaacacagtgcttccctttagAACCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaagtaaacttcttcaggttaactaccactcatagagttttagctatgt Alignment from GeneWise AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA acacccaatagttaaagtcagttcaactctaacacagtgcttccctttagAACCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaagtaaacttcttcaggttaactaccactcatagagttttagctatgt #### Hectd2_ID7163_19 --> 0 - 2 Original Alignment CTGCTTCGTCCAGAAGAAGTAGAAATCCTGGTTTGTGGCAGTCCTGAACTGGATATGCATGCACTGCAGAGGAGCACACAGTACGACGGCTATGCGAAGACAGACCTGACCATAcg gaactgttgtaatgtatgaattctcatttctcctgccttgctttttgcagCCACTTCGTCCAGAAGAAGTGGAGATCCTGGTCTGTGGCAGCCCTGAACTAGATATGCATACACTGCAAAGGAGCACTCAGTATGACAGTTATGCAAAAACAGACTTGACAGTAcggtaaagaggaaaacacactttgccatgtcttagacgggtaaagacctaat Alignment from CESAR CTGCTTCGTCCAGAAGAAGTAGAAATCCTGGTTTGTGGCAGTCCTGAACTGGATATGCATGCACTGCAGAGGAGCACACAGTACGACGGCTATGCGAAGACAGACCTGACCATAcg gaactgttgtaatgtatgaattctcatttctcctgccttgctttttgcagCCACTTCGTCCAGAAGAAGTGGAGATCCTGGTCTGTGGCAGCCCTGAACTAGATATGCATACACTGCAAAGGAGCACTCAGTATGACAGTTATGCAAAAACAGACTTGACAGTAcggtaaagaggaaaacacactttgccatgtcttagacgggtaaagacctaat Alignment from Spaln_aa2Genome CTGCTTCGTCCAGAAGAAGTAGAAATCCTGGTTTGTGGCAGTCCTGAACTGGATATGCATGCACTGCAGAGGAGCACACAGTACGACGGCTATGCGAAGACAGACCTGACCATACG gaactgttgtaatgtatgaattctcatttctcctgccttgctttttgcagCCACTTCGTCCAGAAGAAGTGGAGATCCTGGTCTGTGGCAGCCCTGAACTAGATATGCATACACTGCAAAGGAGCACTCAGTATGACAGTTATGCAAAAACAGACTTGACAGTACGgtaaagaggaaaacacactttgccatgtcttagacgggtaaagacctaat Alignment from Spaln_nt2Genome CTGCTTCGTCCAGAAGAAGTAGAAATCCTGGTTTGTGGCAGTCCTGAACTGGATATGCATGCACTGCAGAGGAGCACACAGTACGACGGCTATGCGAAGACAGACCTGACCATACG gaactgttgtaatgtatgaattctcatttctcctgccttgctttttgcagCCACTTCGTCCAGAAGAAGTGGAGATCCTGGTCTGTGGCAGCCCTGAACTAGATATGCATACACTGCAAAGGAGCACTCAGTATGACAGTTATGCAAAAACAGACTTGACAGTACGgtaaagaggaaaacacactttgccatgtcttagacgggtaaagacctaat Alignment from Pairagon CTGCTTCGTCCAGAAGAAGTAGAAATCCTGGTTTGTGGCAGTCCTGAACTGGATATGCATGCACTGCAGAGGAGCACACAGTACGACGGCTATGCGAAGACAGACCTGACCATACG gaactgttgtaatgtatgaattctcatttctcctgccttgctttttgcagCCACTTCGTCCAGAAGAAGTGGAGATCCTGGTCTGTGGCAGCCCTGAACTAGATATGCATACACTGCAAAGGAGCACTCAGTATGACAGTTATGCAAAAACAGACTTGACAGTACGgtaaagaggaaaacacactttgccatgtcttagacgggtaaagacctaat Alignment from Exonerate_protein2genome CTGCTTCGTCCAGAAGAAGTAGAAATCCTGGTTTGTGGCAGTCCTGAACTGGATATGCATGCACTGCAGAGGAGCACACAGTACGACGGCTATGCGAAGACAGACCTGACCATACG gaactgttgtaatgtatgaattctcatttctcctgccttgctttttgcagCCACTTCGTCCAGAAGAAGTGGAGATCCTGGTCTGTGGCAGCCCTGAACTAGATATGCATACACTGCAAAGGAGCACTCAGTATGACAGTTATGCAAAAACAGACTTGACAGTACGgtaaagaggaaaacacactttgccatgtcttagacgggtaaagacctaat Alignment from Exonerate_coding2genome CTGCTTCGTCCAGAAGAAGTAGAAATCCTGGTTTGTGGCAGTCCTGAACTGGATATGCATGCACTGCAGAGGAGCACACAGTACGACGGCTATGCGAAGACAGACCTGACCATACG gaactgttgtaatgtatgaattctcatttctcctgccttgctttttgcagCCACTTCGTCCAGAAGAAGTGGAGATCCTGGTCTGTGGCAGCCCTGAACTAGATATGCATACACTGCAAAGGAGCACTCAGTATGACAGTTATGCAAAAACAGACTTGACAGTACGgtaaagaggaaaacacactttgccatgtcttagacgggtaaagacctaat Alignment from GeneWise CTGCTTCGTCCAGAAGAAGTAGAAATCCTGGTTTGTGGCAGTCCTGAACTGGATATGCATGCACTGCAGAGGAGCACACAGTACGACGGCTATGCGAAGACAGACCTGACCATACG gaactgttgtaatgtatgaattctcatttctcctgccttgctttttgcagCCACTTCGTCCAGAAGAAGTGGAGATCCTGGTCTGTGGCAGCCCTGAACTAGATATGCATACACTGCAAAGGAGCACTCAGTATGACAGTTATGCAAAAACAGACTTGACAGTACGgtaaagaggaaaacacactttgccatgtcttagacgggtaaagacctaat #### Hells_ID7695_2 --> 0 - 0 Original Alignment GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggatctagcataatgttatacatctgaccctcccccaccccgcagGCTCAAAAGTCCTGGGACAGAGAGTCCACTGAGATCCGGTACTGCAGATTGCAGCACTTACTTGAAAAAAGCAATATTTACTCGAAATTTTTGGTGACCAAAATGGAACAACAACAATTAGAAgtaaatatttctgtcatgcagcaaaaccagctgtctggttagatgtctgt Alignment from CESAR GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggatctagcataatgttatacatctgaccctcccccaccccgcagGCTCAAAAGTCCTGGGACAGAGAGTCCACTGAGATCCGGTACTGCAGATTGCAGCACTTACTTGAAAAAAGCAATATTTACTCGAAATTTTTGGTGACCAAAATGGAACAACAACAATTAGAAgtaaatatttctgtcatgcagcaaaaccagctgtctggttagatgtctgt Alignment from Spaln_aa2Genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggatctagcataatgttatacatctgaccctcccccaccccgcagGCTCAAAAGTCCTGGGACAGAGAGTCCACTGAGATCCGGTACTGCAGATTGCAGCACTTACTTGAAAAAAGCAATATTTACTCGAAATTTTTGGTGACCAAAATGGAACAACAACAATTAGAAgtaaatatttctgtcatgcagcaaaaccagctgtctggttagatgtctgt Alignment from Spaln_nt2Genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggatctagcataatgttatacatctgaccctcccccaccccgcagGCTCAAAAGTCCTGGGACAGAGAGTCCACTGAGATCCGGTACTGCAGATTGCAGCACTTACTTGAAAAAAGCAATATTTACTCGAAATTTTTGGTGACCAAAATGGAACAACAACAATTAGAAgtaaatatttctgtcatgcagcaaaaccagctgtctggttagatgtctgt Alignment from Pairagon GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggatctagcataatgttatacatctgaccctcccccaccccgcagGCTCAAAAGTCCTGGGACAGAGAGTCCACTGAGATCCGGTACTGCAGATTGCAGCACTTACTTGAAAAAAGCAATATTTACTCGAAATTTTTGGTGACCAAAATGGAACAACAACAATTAGAAgtaaatatttctgtcatgcagcaaaaccagctgtctggttagatgtctgt Alignment from Exonerate_protein2genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggatctagcataatgttatacatctgaccctcccccaccccgcagGCTCAAAAGTCCTGGGACAGAGAGTCCACTGAGATCCGGTACTGCAGATTGCAGCACTTACTTGAAAAAAGCAATATTTACTCGAAATTTTTGGTGACCAAAATGGAACAACAACAATTAGAAgtaaatatttctgtcatgcagcaaaaccagctgtctggttagatgtctgt Alignment from Exonerate_coding2genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggatctagcataatgttatacatctgaccctcccccaccccgcagGCTCAAAAGTCCTGGGACAGAGAGTCCACTGAGATCCGGTACTGCAGATTGCAGCACTTACTTGAAAAAAGCAATATTTACTCGAAATTTTTGGTGACCAAAATGGAACAACAACAATTAGAAgtaaatatttctgtcatgcagcaaaaccagctgtctggttagatgtctgt Alignment from GeneWise GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggatctagcataatgttatacatctgaccctcccccaccccgcagGCTCAAAAGTCCTGGGACAGAGAGTCCACTGAGATCCGGTACTGCAGATTGCAGCACTTACTTGAAAAAAGCAATATTTACTCGAAATTTTTGGTGACCAAAATGGAACAACAACAATTAGAAgtaaatatttctgtcatgcagcaaaaccagctgtctggttagatgtctgt #### Hells_ID7702_9 --> 0 - 0 Original Alignment ATTCCTACTCTGCTGTATCATGGAACCCGGGAGGACCGTCGGAAATTAGTAAAGAATATCCACAAAAGACAAGGGACACTGCAGATTCATCCTGTGGTGGTCACATCATTCGAGATCGCTATGCGAGACCAGAATGCTTTACAG aggactgacgggaggaggcctttcacaattctcttctttctaacccccagATCCCTACTTTGCTGTATCAGGGAACCCAGGATGACTGCCAAAGACTAGTTAAGAATATTCACAAAAGACAGGGGACA---------CAACCTCTGGTAGTTATATCATTTAAGATTGCAATGAGAGACCAAAATGTATTACAGgtgactctgttagtcatggatattaatcaaaggaagtattaaaagaagat Alignment from CESAR ATTCCTACTCTGCTGTATCATGGAACCCGGGAGGACCGTCGGAAATTAGTAAAGAATATCCACAAAAGACAAGGGACACTGCAGATTCATCCTGTGGTGGTCACATCATTCGAGATCGCTATGCGAGACCAGAATGCTTTACAG aggactgacgggaggaggcctttcacaattctcttctttctaacccccagATCCCTACTTTGCTGTATCAGGGAACCCAGGATGACTGCCAAAGACTAGTTAAGAATATTCACAAAAGACAGGGGACA---------CAACCTCTGGTAGTTATATCATTTAAGATTGCAATGAGAGACCAAAATGTATTACAGgtgactctgttagtcatggatattaatcaaaggaagtattaaaagaagat Alignment from Spaln_aa2Genome ATTCCTACTCTGCTGTATCATGGAACCCGGGAGGACCGTCGGAAATTAGTAAAGAATATCCACAAAAGACAAGGGACACTGCAGATTCATCCTGTGGTGGTCACATCATTCGAGATCGCTATGCGAGACCAGAATGCTTTACAG aggactgacgggaggaggcctttcacaattctcttctttctaacccccagATCCCTACTTTGCTGTATCAGGGAACCCAGGATGACTGCCAAAGACTAGTTAAGAATATTCACAAAAGACAGGGGACA---------CAACCTCTGGTAGTTATATCATTTAAGATTGCAATGAGAGACCAAAATGTATTACAGgtgactctgttagtcatggatattaatcaaaggaagtattaaaagaagat Alignment from Spaln_nt2Genome ATTCCTACTCTGCTGTATCATGGAACCCGGGAGGACCGTCGGAAATTAGTAAAGAATATCCACAAAAGACAAGGGACACTGCAGATTCATCCTGTGGTGGTCACATCATTCGAGATCGCTATGCGAGACCAGAATGCTTTACAG aggactgacgggaggaggcctttcacaattctcttctttctaacccccagATCCCTACTTTGCTGTATCAGGGAACCCAGGATGACTGCCAAAGACTAGTTAAGAATATTCACAAAAGACAGGGGACA---------CAACCTCTGGTAGTTATATCATTTAAGATTGCAATGAGAGACCAAAATGTATTACAGgtgactctgttagtcatggatattaatcaaaggaagtattaaaagaagat Alignment from Pairagon ATTCCTACTCTGCTGTATCATGGAACCCGGGAGGACCGTCGGAAATTAGTAAAGAATATCCACAAAAGACAAGGGACACTGCAGATTCATCCTGTGGTGGTCACATCATTCGAGATCGCTATGCGAGACCAGAATGCTTTACAG aggactgacgggaggaggcctttcacaattctcttctttctaacccccagATCCCTACTTTGCTGTATCAGGGAACCCAGGATGACTGCCAAAGACTAGTTAAGAATATTCACAAAAGACAGGGGACA---------CAACCTCTGGTAGTTATATCATTTAAGATTGCAATGAGAGACCAAAATGTATTACAGgtgactctgttagtcatggatattaatcaaaggaagtattaaaagaagat Alignment from Exonerate_protein2genome ATTCCTACTCTGCTGTATCATGGAACCCGGGAGGACCGTCGGAAATTAGTAAAGAATATCCACAAAAGACAAGGGACACTGCAGATTCATCCTGTGGTGGTCACATCATTCGAGATCGCTATGCGAGACCAGAATGCTTTACAG aggactgacgggaggaggcctttcacaattctcttctttctaacccccagATCCCTACTTTGCTGTATCAGGGAACCCAGGATGACTGCCAAAGACTAGTTAAGAATATTCACAAAAGACAGGGGACA---------CAACCTCTGGTAGTTATATCATTTAAGATTGCAATGAGAGACCAAAATGTATTACAGgtgactctgttagtcatggatattaatcaaaggaagtattaaaagaagat Alignment from Exonerate_coding2genome ATTCCTACTCTGCTGTATCATGGAACCCGGGAGGACCGTCGGAAATTAGTAAAGAATATCCACAAAAGACAAGGGACACTGCAGATTCATCCTGTGGTGGTCACATCATTCGAGATCGCTATGCGAGACCAGAATGCTTTACAG aggactgacgggaggaggcctttcacaattctcttctttctaacccccagATCCCTACTTTGCTGTATCAGGGAACCCAGGATGACTGCCAAAGACTAGTTAAGAATATTCACAAAAGACAGGGGACA---------CAACCTCTGGTAGTTATATCATTTAAGATTGCAATGAGAGACCAAAATGTATTACAGgtgactctgttagtcatggatattaatcaaaggaagtattaaaagaagat Alignment from GeneWise ATTCCTACTCTGCTGTATCATGGAACCCGGGAGGACCGTCGGAAATTAGTAAAGAATATCCACAAAAGACAAGGGACACTGCAGATTCATCCTGTGGTGGTCACATCATTCGAGATCGCTATGCGAGACCAGAATGCTTTACAG aggactgacgggaggaggcctttcacaattctcttctttctaacccccagATCCCTACTTTGCTGTATCAGGGAACCCAGGATGACTGCCAAAGACTAGTTAAGAATATTCACAAAAGACAGGGGACA---------CAACCTCTGGTAGTTATATCATTTAAGATTGCAATGAGAGACCAAAATGTATTACAGgtgactctgttagtcatggatattaatcaaaggaagtattaaaagaagat #### Hells_ID7704_11 --> 1 - 0 Original Alignment cTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tctaaatctgtttcaccaccagagctttaccttttcttttgtctccacagcTTTGAGTCTTGGTTTGATATCACCAGTCTTTCAGAAACTGCTGAAGACATCATAGCTACAGAGAGAGAACAGAATGTTTTATATATGCTACACCAGgtaagttgacacttctcttcctattttctgtgtctcatcccaggactcat Alignment from CESAR cTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tctaaatctgtttcaccaccagagctttaccttttcttttgtctccacagcTTTGAGTCTTGGTTTGATATCACCAGTCTTTCAGAAACTGCTGAAGACATCATAGCTACAGAGAGAGAACAGAATGTTTTATATATGCTACACCAGgtaagttgacacttctcttcctattttctgtgtctcatcccaggactcat Alignment from Spaln_aa2Genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tctaaatctgtttcaccaccagagctttaccttttcttttgtctccacagCTTTGAGTCTTGGTTTGATATCACCAGTCTTTCAGAAACTGCTGAAGACATCATAGCTACAGAGAGAGAACAGAATGTTTTATATATGCTACACCAGgtaagttgacacttctcttcctattttctgtgtctcatcccaggactcat Alignment from Spaln_nt2Genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tctaaatctgtttcaccaccagagctttaccttttcttttgtctccacagCTTTGAGTCTTGGTTTGATATCACCAGTCTTTCAGAAACTGCTGAAGACATCATAGCTACAGAGAGAGAACAGAATGTTTTATATATGCTACACCAGgtaagttgacacttctcttcctattttctgtgtctcatcccaggactcat Alignment from Pairagon CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tctaaatctgtttcaccaccagagctttaccttttcttttgtctccacagCTTTGAGTCTTGGTTTGATATCACCAGTCTTTCAGAAACTGCTGAAGACATCATAGCTACAGAGAGAGAACAGAATGTTTTATATATGCTACACCAGgtaagttgacacttctcttcctattttctgtgtctcatcccaggactcat Alignment from Exonerate_protein2genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tctaaatctgtttcaccaccagagctttaccttttcttttgtctccacagCTTTGAGTCTTGGTTTGATATCACCAGTCTTTCAGAAACTGCTGAAGACATCATAGCTACAGAGAGAGAACAGAATGTTTTATATATGCTACACCAGgtaagttgacacttctcttcctattttctgtgtctcatcccaggactcat Alignment from Exonerate_coding2genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tctaaatctgtttcaccaccagagctttaccttttcttttgtctccacagCTTTGAGTCTTGGTTTGATATCACCAGTCTTTCAGAAACTGCTGAAGACATCATAGCTACAGAGAGAGAACAGAATGTTTTATATATGCTACACCAGgtaagttgacacttctcttcctattttctgtgtctcatcccaggactcat Alignment from GeneWise CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tctaaatctgtttcaccaccagagctttaccttttcttttgtctccacagCTTTGAGTCTTGGTTTGATATCACCAGTCTTTCAGAAACTGCTGAAGACATCATAGCTACAGAGAGAGAACAGAATGTTTTATATATGCTACACCAGgtaagttgacacttctcttcctattttctgtgtctcatcccaggactcat #### Hells_ID7706_13 --> 0 - 2 Original Alignment AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGag tcactttgctcctaggtgccaaacagattactctctacggttttctgcagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGACCAGTTTCCCAGCGAACTTGAGAAACTGATAAGCCAAATTCAA---CAAGCTAATAGAGATaggtgagtcagataagaacctataaactaggaactgtgtgccactttccacc Alignment from CESAR AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGag tcactttgctcctaggtgccaaacagattactctctacggttttctgcagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGACCAGTTTCCCAGCGAACTTGAGAAACTGATAAGCCAAATTCAACAA---GCTAATAGAGATaggtgagtcagataagaacctataaactaggactttcgttcttttgtttttc Alignment from Spaln_aa2Genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG tcactttgctcctaggtgccaaacagattactctctacggttttctgcagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGACCAGTTTCCCAGCGAACTTGAGAAACTGATAAGCCAAATTCAA---CAAGCTAATAGAGATAGgtgagtcagataagaacctataaactaggaactgtgtgccactttccacc Alignment from Spaln_nt2Genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG tcactttgctcctaggtgccaaacagattactctctacggttttctgcagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGACCAGTTTCCCAGCGAACTTGAGAAACTGATAAGCCAAATTCA---ACAAGCTAATAGAGATAGgtgagtcagataagaacctataaactaggaactgtgtgccactttccacc Alignment from Pairagon AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG tcactttgctcctaggtgccaaacagattactctctacggttttctgcagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGACCAGTTTCCCAGCGAACTTGAGAAACTGATAAGCCAAATTCAAC---AAGCTAATAGAGATAGgtgagtcagataagaacctataaactaggaactgtgtgccactttccacc Alignment from Exonerate_protein2genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG tcactttgctcctaggtgccaaacagattactctctacggttttctgcagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGACCAGTTTCCCAGCGAACTTGAGAAACTGATAAGCCAAATTCAA---CAAGCTAATAGAGATAGgtgagtcagataagaacctataaactaggaactgtgtgccactttccacc Alignment from Exonerate_coding2genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG tcactttgctcctaggtgccaaacagattactctctacggttttctgcagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGACCAGTTTCCCAGCGAACTTGAGAAACTGATAAGCCAAATTCAA---CAAGCTAATAGAGATAGgtgagtcagataagaacctataaactaggaactgtgtgccactttccacc Alignment from GeneWise AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG tcactttgctcctaggtgccaaacagattactctctacggttttctgcagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGACCAGTTTCCCAGCGAACTTGAGAAACTGATAAGCCAAATTCAA---CAAGCTAATAGAGATAGgtgagtcagataagaacctataaactaggaactgtgtgccactttccacc #### Hells_ID7707_14 --> 1 - 0 Original Alignment gACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagaACAGCTGTGCAAGGTAATATTCCTATAGAATCAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from CESAR gACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG gagtcagataagaacctataaactaggactttcgttcttttgtttttcagaACAGCTGTGCAAGGTAATATTCCTATAGAATCAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from Spaln_aa2Genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCTATAGAATCAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from Spaln_nt2Genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCTATAGAATCAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from Pairagon GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCTATAGAATCAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from Exonerate_protein2genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCTATAGAATCAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from Exonerate_coding2genome GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCTATAGAATCAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta Alignment from GeneWise GACTGTTGTGGAAGGTAATATCCCTATAGAATCTGAAGTTAATCTGAAGCTGCGGAATATAATGATGCTACTTCGAAAGTGCTGTAATCACCCATATATGATTGAATATCCTATTGACCCTGTCACACAAGAATTTAAG aaggcagataagaacctataaactaggactttcgttcttttgtttttcagAACAGCTGTGCAAGGTAATATTCCTATAGAATCAGAAGTGAATTTGAAGCTGCGCAATATCATGATGTTACTCCAGAGGTGCTATAACCACCCTTATATGATTGAATATCCCATTGACCCAGTGACACAGGAGTTTAAAgtaaatgtgacaaatgaaccaaccagattacagaatgcaagattaagcta #### Hells_ID7708_15 --> 0 - 0 Original Alignment ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG gttacattcaaatctacaagctgtcattgacttgccttctttcttattagAATGATGAAGAGTTTGTAACAAACTCTGGGAGGTTCCTAATTTCAGATCGAATGCTGCCAGAACTCAAGAAAAGAGGTCATAAGgtgagttcaactaaaatttatgctgtctgtccagtgtatttggcatcagc Alignment from CESAR ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG gttacattcaaatctacaagctgtcattgacttgccttctttcttattagAATGATGAAGAGTTTGTAACAAACTCTGGGAGGTTCCTAATTTCAGATCGAATGCTGCCAGAACTCAAGAAAAGAGGTCATAAGgtgagttcaactaaaatttatgctgtctgtccagtgtatttggcatcagc Alignment from Spaln_aa2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG gttacattcaaatctacaagctgtcattgacttgccttctttcttattagAATGATGAAGAGTTTGTAACAAACTCTGGGAGGTTCCTAATTTCAGATCGAATGCTGCCAGAACTCAAGAAAAGAGGTCATAAGgtgagttcaactaaaatttatgctgtctgtccagtgtatttggcatcagc Alignment from Spaln_nt2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG gttacattcaaatctacaagctgtcattgacttgccttctttcttattagAATGATGAAGAGTTTGTAACAAACTCTGGGAGGTTCCTAATTTCAGATCGAATGCTGCCAGAACTCAAGAAAAGAGGTCATAAGgtgagttcaactaaaatttatgctgtctgtccagtgtatttggcatcagc Alignment from Pairagon ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG gttacattcaaatctacaagctgtcattgacttgccttctttcttattagAATGATGAAGAGTTTGTAACAAACTCTGGGAGGTTCCTAATTTCAGATCGAATGCTGCCAGAACTCAAGAAAAGAGGTCATAAGgtgagttcaactaaaatttatgctgtctgtccagtgtatttggcatcagc Alignment from Exonerate_protein2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG gttacattcaaatctacaagctgtcattgacttgccttctttcttattagAATGATGAAGAGTTTGTAACAAACTCTGGGAGGTTCCTAATTTCAGATCGAATGCTGCCAGAACTCAAGAAAAGAGGTCATAAGgtgagttcaactaaaatttatgctgtctgtccagtgtatttggcatcagc Alignment from Exonerate_coding2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG gttacattcaaatctacaagctgtcattgacttgccttctttcttattagAATGATGAAGAGTTTGTAACAAACTCTGGGAGGTTCCTAATTTCAGATCGAATGCTGCCAGAACTCAAGAAAAGAGGTCATAAGgtgagttcaactaaaatttatgctgtctgtccagtgtatttggcatcagc Alignment from GeneWise ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG gttacattcaaatctacaagctgtcattgacttgccttctttcttattagAATGATGAAGAGTTTGTAACAAACTCTGGGAGGTTCCTAATTTCAGATCGAATGCTGCCAGAACTCAAGAAAAGAGGTCATAAGgtgagttcaactaaaatttatgctgtctgtccagtgtatttggcatcagc #### Hells_ID7709_16 --> 0 - 0 Original Alignment GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGAT---TATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgtatttggcatcagcttagtcccctcctcttgcttccaaagTTTCTCGTGTTCTCACAAATGACTAGCATGTTGGACATCCTGATGGATTATTATTGTCATCTTAGAAACTTCATATTTAGCCGACTAGATGGGTCAACGACTTATTCCGAAAGAGAAAACAATgcaagtaagactggaatatattgtatatagccatggcacctgtatacaga Alignment from CESAR GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGAT---TATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgtatttggcatcagcttagtcccctcctcttgcttccaaagTTTCTCGTGTTCTCACAAATGACTAGCATGTTGGACATCCTGATGGATTATTATTGTCATCTTAGAAACTTCATATTTAGCCGACTAGATGGGTCAACGACTTATTCCGAAAGAGAAAACAATgcaagtaagactggaatatattgtatatagccatggcacctgtatacaga Alignment from Spaln_aa2Genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGAT---TATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgtatttggcatcagcttagtcccctcctcttgcttccaaagTTTCTCGTGTTCTCACAAATGACTAGCATGTTGGACATCCTGATGGATTATTATTGTCATCTTAGAAACTTCATATTTAGCCGACTAGATGGGTCAACGACTTATTCCGAAAGAGAAAACAATgcaagtaagactggaatatattgtatatagccatggcacctgtatacaga Alignment from Spaln_nt2Genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGG---ATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgtatttggcatcagcttagtcccctcctcttgcttccaaagTTTCTCGTGTTCTCACAAATGACTAGCATGTTGGACATCCTGATGGATTATTATTGTCATCTTAGAAACTTCATATTTAGCCGACTAGATGGGTCAACGACTTATTCCGAAAGAGAAAACAATgcaagtaagactggaatatattgtatatagccatggcacctgtatacaga Alignment from Pairagon ---------------------------------------------------TTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGG---ATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT CTGTCCAGTGTATTTGGCATCAGCTTAGTCCCCTCCTCTTGCTTCCAAAGTTTCTCGTGTTCTCACAAATGACTAGCATGTTGGACATCCTGATGGATTATTATTGTCATCTTAGAAACTTCATATTTAGCCGACTAGATGGGTCAACGACTTATTCCGAAAGAGAAAACAATgcaagtaagactggaatatattgtatatagccatggcacctgtatacaga Alignment from Exonerate_protein2genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGAT---TATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgtatttggcatcagcttagtcccctcctcttgcttccaaagTTTCTCGTGTTCTCACAAATGACTAGCATGTTGGACATCCTGATGGATTATTATTGTCATCTTAGAAACTTCATATTTAGCCGACTAGATGGGTCAACGACTTATTCCGAAAGAGAAAACAATgcaagtaagactggaatatattgtatatagccatggcacctgtatacaga Alignment from Exonerate_coding2genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGAT---TATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgtatttggcatcagcttagtcccctcctcttgcttccaaagTTTCTCGTGTTCTCACAAATGACTAGCATGTTGGACATCCTGATGGATTATTATTGTCATCTTAGAAACTTCATATTTAGCCGACTAGATGGGTCAACGACTTATTCCGAAAGAGAAAACAATgcaagtaagactggaatatattgtatatagccatggcacctgtatacaga Alignment from GeneWise GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTAT---TGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT-ATA ctgtccagtgtatttggcatcagcttagtcccctcctcttgcttccaaagTTTCTCGTGTTCTCACAAATGACTAGCATGTTGGACATCCTGATGGATTATTATTGTCATCTTAGAAACTTCATATTTAGCCGACTAGATGGGTCAACGACTTATTCCGAAAGAGAAAACAATGCAAgtaagactggaatatattgtatatagccatggcacctgtatacaga #### Hhex_ID7337_2 --> 2 - 0 Original Alignment gcAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCCCCACCC---GAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG tgtttatggttggtccacaggcccctttcatgtgtttgctctgttcacaggtGAGCCCTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCATCAAAAAAAGGGTGGTCAAGTCAGATTCTCCAATGACCAAACTGTTGAGTTGGAGAGGAAGTTTGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgaggcacacccatccattaagaacacagctgcacaagggtctgaatat Alignment from CESAR gcAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCC---CCACCCGAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG tgtttatggttggtccacaggcccctttcatgtgtttgctctgttcacaggtGAGCCCTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCATCAAAAAAAGGGTGGTCAAGTCAGATTCTCCAATGACCAAACTGTTGAGTTGGAGAGGAAGTTTGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgaggcacacccatccattaagaacacagctgcacaagggtctgaatat Alignment from Spaln_aa2Genome GCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCC---CCACCCGAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG tgtttatggttggtccacaggcccctttcatgtgtttgctctgttcacagGTGAGCCCTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCATCAAAAAAAGGGTGGTCAAGTCAGATTCTCCAATGACCAAACTGTTGAGTTGGAGAGGAAGTTTGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgaggcacacccatccattaagaacacagctgcacaagggtctgaatat Alignment from Spaln_nt2Genome GCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCCCCACCC---GAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG tgtttatggttggtccacaggcccctttcatgtgtttgctctgttcacagGTGAGCCCTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCATCAAAAAAAGGGTGGTCAAGTCAGATTCTCCAATGACCAAACTGTTGAGTTGGAGAGGAAGTTTGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgaggcacacccatccattaagaacacagctgcacaagggtctgaatat Alignment from Pairagon GCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCC---CCACCCGAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG tgtttatggttggtccacaggcccctttcatgtgtttgctctgttcacagGTGAGCCCTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCATCAAAAAAAGGGTGGTCAAGTCAGATTCTCCAATGACCAAACTGTTGAGTTGGAGAGGAAGTTTGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgaggcacacccatccattaagaacacagctgcacaagggtctgaatat Alignment from Exonerate_protein2genome GCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCC---CCACCCGAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG tgtttatggttggtccacaggcccctttcatgtgtttgctctgttcacagGTGAGCCCTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCATCAAAAAAAGGGTGGTCAAGTCAGATTCTCCAATGACCAAACTGTTGAGTTGGAGAGGAAGTTTGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgaggcacacccatccattaagaacacagctgcacaagggtctgaatat Alignment from Exonerate_coding2genome GGCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCC---CCACCCGAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG tgtttatggttggtccacaggcccctttcatgtgtttgctctgttcacaGGTGAGCCCTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCATCAAAAAAAGGGTGGTCAAGTCAGATTCTCCAATGACCAAACTGTTGAGTTGGAGAGGAAGTTTGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgaggcacacccatccattaagaacacagctgcacaagggtctgaatat Alignment from GeneWise GCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCCCCACCC---GAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG tgtttatggttggtccacaggcccctttcatgtgtttgctctgttcacagGTGAGCCCTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCATCAAAAAAAGGGTGGTCAAGTCAGATTCTCCAATGACCAAACTGTTGAGTTGGAGAGGAAGTTTGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgaggcacacccatccattaagaacacagctgcacaagggtctgaatat #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTAATGTGGTTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATtggtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTAATGTGGTTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATtggtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTAATGTGGTTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTAATGTGGTTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTAATGTGGTTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTAATGTGGTTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTAATGTGGTTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG ttgccacatgtgtgaaatgacagcttgtctcctgtatcccctcgccacagGTGGATTTTGATAATCCAGACTATGAGAGGTTCCCCAACTTTCGTAATGTGGTTGGCTATGAGACAGTGGTTGGCCCTGGGGATGTACTATACATCCCCATGTATTGgtaaggtgcaaatgaatgaagcagtgctttcacctccctacaatggtatt #### Hif1an_ID9068_6 --> 1 - 0 Original Alignment gTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG actatgctccttgctcccctttactgatcacctacttcttctccaaacaggTGGCACCATATAGAGTCCCTGCTGAATGGAGGAATTACTATCACTGTGAACTTCTGGTATAGGgtaagtaattagcttgtcattgatcatttttatctcttgtgatgaatgtg Alignment from CESAR gTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG actatgctccttgctcccctttactgatcacctacttcttctccaaacaggTGGCACCATATAGAGTCCCTGCTGAATGGAGGAATTACTATCACTGTGAACTTCTGGTATAGGgtaagtaattagcttgtcattgatcatttttatctcttgtgatgaatgtg Alignment from Spaln_aa2Genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG actatgctccttgctcccctttactgatcacctacttcttctccaaacagGTGGCACCATATAGAGTCCCTGCTGAATGGAGGAATTACTATCACTGTGAACTTCTGGTATAGGgtaagtaattagcttgtcattgatcatttttatctcttgtgatgaatgtg Alignment from Spaln_nt2Genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG actatgctccttgctcccctttactgatcacctacttcttctccaaacagGTGGCACCATATAGAGTCCCTGCTGAATGGAGGAATTACTATCACTGTGAACTTCTGGTATAGGgtaagtaattagcttgtcattgatcatttttatctcttgtgatgaatgtg Alignment from Pairagon GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG actatgctccttgctcccctttactgatcacctacttcttctccaaacagGTGGCACCATATAGAGTCCCTGCTGAATGGAGGAATTACTATCACTGTGAACTTCTGGTATAGGgtaagtaattagcttgtcattgatcatttttatctcttgtgatgaatgtg Alignment from Exonerate_protein2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG actatgctccttgctcccctttactgatcacctacttcttctccaaacagGTGGCACCATATAGAGTCCCTGCTGAATGGAGGAATTACTATCACTGTGAACTTCTGGTATAGGgtaagtaattagcttgtcattgatcatttttatctcttgtgatgaatgtg Alignment from Exonerate_coding2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG actatgctccttgctcccctttactgatcacctacttcttctccaaacagGTGGCACCATATAGAGTCCCTGCTGAATGGAGGAATTACTATCACTGTGAACTTCTGGTATAGGgtaagtaattagcttgtcattgatcatttttatctcttgtgatgaatgtg Alignment from GeneWise GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG actatgctccttgctcccctttactgatcacctacttcttctccaaacagGTGGCACCATATAGAGTCCCTGCTGAATGGAGGAATTACTATCACTGTGAACTTCTGGTATAGGgtaagtaattagcttgtcattgatcatttttatctcttgtgatgaatgtg #### Hnrnpul2_ID2399_3 --> 1 - 1 Original Alignment cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt taagttataataacatgtctggcattctcttttggattcttttccttcagcTCAAGATCACCCCTACCTCCAGAGGAAGAAGGTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAATTTGGATACTtgtgagcggttgcatgttctggcttatcttcagaaatgtgctactttctta Alignment from CESAR cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt taagttataataacatgtctggcattctcttttggattcttttccttcagcTCAAGATCACCCCTACCTCCAGAGGAAGAAGGTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAATTTGGATACTtgtgagcggttgcatgttctggcttatcttcagaaatgtgctactttctta Alignment from Spaln_aa2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT taagttataataacatgtctggcattctcttttggattcttttccttcagCTCAAGATCACCCCTACCTCCAGAGGAAGAAGGTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAATTTGGATACTTgtgagcggttgcatgttctggcttatcttcagaaatgtgctactttctta Alignment from Spaln_nt2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT taagttataataacatgtctggcattctcttttggattcttttccttcagCTCAAGATCACCCCTACCTCCAGAGGAAGAAGGTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAATTTGGATACTTgtgagcggttgcatgttctggcttatcttcagaaatgtgctactttctta Alignment from Pairagon CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT taagttataataacatgtctggcattctcttttggattcttttccttcagCTCAAGATCACCCCTACCTCCAGAGGAAGAAGGTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAATTTGGATACTTgtgagcggttgcatgttctggcttatcttcagaaatgtgctactttctta Alignment from Exonerate_protein2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT taagttataataacatgtctggcattctcttttggattcttttccttcagCTCAAGATCACCCCTACCTCCAGAGGAAGAAGGTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAATTTGGATACTTgtgagcggttgcatgttctggcttatcttcagaaatgtgctactttctta Alignment from Exonerate_coding2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT taagttataataacatgtctggcattctcttttggattcttttccttcagCTCAAGATCACCCCTACCTCCAGAGGAAGAAGGTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAATTTGGATACTTgtgagcggttgcatgttctggcttatcttcagaaatgtgctactttctta Alignment from GeneWise CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT taagttataataacatgtctggcattctcttttggattcttttccttcagCTCAAGATCACCCCTACCTCCAGAGGAAGAAGGTAAAGATGAGGAGGAGGCCCAGTCATTAGTGAATTTGGATACTTgtgagcggttgcatgttctggcttatcttcagaaatgtgctactttctta #### Hnrnpul2_ID2407_11 --> 2 - 1 Original Alignment ccAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATg taatgaaggtgactgtaaagctcccagcaaatttctttctatatgtacagctAACTTCTCTCTGGCTGAGAAATGCGATTACATGGATGAAGTTACGTATTGCGAGCTTGAAAAAGAGGAGGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCAGAGAAACGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAATCGAAGCCGAGGCCAAGGTTATggtaagctctcaacaccagttatggataaggggagcatggtaatttcctca Alignment from CESAR ccAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATg taatgaaggtgactgtaaagctcccagcaaatttctttctatatgtacagctAACTTCTCTCTGGCTGAGAAATGCGATTACATGGATGAAGTTACGTATTGCGAGCTTGAAAAAGAGGAGGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCAGAGAAACGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAATCGAAGCCGAGGCCAAGGTTATggtaagctctcaacaccagttatggataaggggagcatggtaatttcctca Alignment from Spaln_aa2Genome CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG taatgaaggtgactgtaaagctcccagcaaatttctttctatatgtacagCTAACTTCTCTCTGGCTGAGAAATGCGATTACATGGATGAAGTTACGTATTGCGAGCTTGAAAAAGAGGAGGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCAGAGAAACGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAATCGAAGCCGAGGCCAAGGTTATGgtaagctctcaacaccagttatggataaggggagcatggtaatttcctca Alignment from Spaln_nt2Genome CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG taatgaaggtgactgtaaagctcccagcaaatttctttctatatgtacagCTAACTTCTCTCTGGCTGAGAAATGCGATTACATGGATGAAGTTACGTATTGCGAGCTTGAAAAAGAGGAGGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCAGAGAAACGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAATCGAAGCCGAGGCCAAGGTTATGgtaagctctcaacaccagttatggataaggggagcatggtaatttcctca Alignment from Pairagon CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG taatgaaggtgactgtaaagctcccagcaaatttctttctatatgtacagCTAACTTCTCTCTGGCTGAGAAATGCGATTACATGGATGAAGTTACGTATTGCGAGCTTGAAAAAGAGGAGGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCAGAGAAACGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAATCGAAGCCGAGGCCAAGGTTATGgtaagctctcaacaccagttatggataaggggagcatggtaatttcctca Alignment from Exonerate_protein2genome CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG taatgaaggtgactgtaaagctcccagcaaatttctttctatatgtacagCTAACTTCTCTCTGGCTGAGAAATGCGATTACATGGATGAAGTTACGTATTGCGAGCTTGAAAAAGAGGAGGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCAGAGAAACGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAATCGAAGCCGAGGCCAAGGTTATGgtaagctctcaacaccagttatggataaggggagcatggtaatttcctca Alignment from Exonerate_coding2genome CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG taatgaaggtgactgtaaagctcccagcaaatttctttctatatgtacagCTAACTTCTCTCTGGCTGAGAAATGCGATTACATGGATGAAGTTACGTATTGCGAGCTTGAAAAAGAGGAGGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCAGAGAAACGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAATCGAAGCCGAGGCCAAGGTTATGgtaagctctcaacaccagttatggataaggggagcatggtaatttcctca Alignment from GeneWise CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG taatgaaggtgactgtaaagctcccagcaaatttctttctatatgtacagCTAACTTCTCTCTGGCTGAGAAATGCGATTACATGGATGAAGTTACGTATTGCGAGCTTGAAAAAGAGGAGGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCAGAGAAACGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAATCGAAGCCGAGGCCAAGGTTATGgtaagctctcaacaccagttatggataaggggagcatggtaatttcctca #### Hpse2_ID8641_11 --> 1 - 2 Original Alignment cCACAACTATGTCCGTGGCTCTATCACACTTTTCATCATCAACCTACATCGATCAAGAAAGAAAATCAAACTGGCTGGGACTCTGAGGGACAAGCTCGTGCACCAGTATCTGCTGCAGCCCTATGGGCAGGAAGGCCTAAAGTCCaa agtttcttatttttgtcagtgacgctgtttggataaattttcttatccagcCAAAACTATGTCTGTGGGTCTATCACACTATTTATTACCAATTTA---------------AAAATCAGACGTGCAGGG------AGGGACAAACTAGTGCAGCAATACCTCTTGCAGCCTTATGGACATGAA---CCAAGGTCCaagtgacatttacaacaagcaaggtccaagcatgggccaccaccttgatgca Alignment from CESAR cCACAACTATGTCCGTGGCTCTATCACACTTTTCATCATCAACCTACATCGATCAAGAAAGAAAATCAAACTGGCTGGGACTCTGAGGGACAAGCTCGTGCACCAGTATCTGCTGCAGCCCTATGGGCAGGAAGGCCTAAAGTCCaa agtttcttatttttgtcagtgacgctgtttggataaattttcttatccagcCAAAACTATGTCTGTGGGTCTATCACACTATTTATTACCAATTTA---------------AAAATCAGACGTGCAGGG------AGGGACAAACTAGTGCAGCAATACCTCTTGCAGCCTTATGGACATGAA---CCAAGGTCCaagtgacatttacaacaagcaaggtccaagcatgggccaccaccttgatgca Alignment from Spaln_aa2Genome CCACAACTATGTCCGTGGCTCTATCACACTTTTCATCATCAACCTACATCGATCAAGAAAGAAAATCAAACTGGCTGGGACTCTGAGGGACAAGCTCGTGCACCAGTATCTGCTGCAGCCCTATGGGCAGGAAGGCCTAAAGTCCAA agtttcttatttttgtcagtgacgctgtttggataaattttcttatccagCCAAAACTATGTCTGTGGGTCTATCACACTATTTATTACCAATTTA---------------AAAATCAGACGTGCAGGG------AGGGACAAACTAGTGCAGCAATACCTCTTGCAGCCTTATGGACATGAA---CCAAGGTCCAAgtgacatttacaacaagcaaggtccaagcatgggccaccaccttgatgca Alignment from Spaln_nt2Genome CCACAACTATGTCCGTGGCTCTATCACACTTTTCATCATCAACCTACATCGATCAAGAAAGAAAATCAAACTGGCTGGGACTCTGAGGGACAAGCTCGTGCACCAGTATCTGCTGCAGCCCTATGGGCAGGAAGGCCTAAAGTCCAA agtttcttatttttgtcagtgacgctgtttggataaattttcttatccagCCAAAACTATGTCTGTGGGTCTATCACACTATTTATTACCAATTTA---------------AAAATCAGACGTGCAGG------GAGGGACAAACTAGTGCAGCAATACCTCTTGCAGCCTTATGGACATGAA---CCAAGGTCCAAgtgacatttacaacaagcaaggtccaagcatgggccaccaccttgatgca Alignment from Pairagon CCACAACTATGTCCGTGGCTCTATCACACTTTTCATCATCAACCTACATCGATCAAGAAAGAAAATCAAACTGGCTGGGACTCTGAGGGACAAGCTCGTGCACCAGTATCTGCTGCAGCCCTATGGGCAGGAAGGCCTAAAGTCCAA agtttcttatttttgtcagtgacgctgtttggataaattttcttatccagCCAAAACTATGTCTGTGGGTCTATCACACTATTTATTACCAATTTA---------------AAAATCAGACGTGCAGG------GAGGGACAAACTAGTGCAGCAATACCTCTTGCAGCCTTATGGACATGAA---CCAAGGTCCAAgtgacatttacaacaagcaaggtccaagcatgggccaccaccttgatgca Alignment from Exonerate_protein2genome CACACTTTTCATCATC---AACCTACATCGATCAAGAAAGAAAATCAAACTGGCTGGGACTCTGAGGGACAAGCTCGTGCACCAGTATCTGCTGCAGCCCTATGGGCAGGAAGGCCTAAAGTCCAA agtttcttatttttgtcagtgacgctgtttggataaattttcttatccagCCAAAACTATGTCTGTGGGTCTATCACACTATTTATTACCAATTTAAAAATCAGACGTGCAGGGAGGGACAAACTAGTGCAGCAATACCTCTTGCAGCCTTATGGACATGAACCA---AGGTCCAAgtgacatttacaacaagcaaggtccaagcatgggccaccaccttgatgca Alignment from Exonerate_coding2genome agtttcttatttttgtcagtgacgctgtttggataaattttcttatccagccaaaactatgtctgtgggtctatcacactatttattaccaatttaaaaatcagacgtgcagggagggacaaactagtgcagcaatacctcttgcagccttatggacatgaaccaaggtccaagtgacatttacaacaagcaaggtccaagcatgggccaccaccttgatgca Alignment from GeneWise CCACAACTATGTCCGTGGCTCTATCACACTTTTCATCATCAACCTACATCGATCAAGAAAGAAAATCAAACTGGCTGGGACTCTGAGGGACAAGCTCGTGCACCAGTATCTGCTGCAGCCCTATGGGCAGGAAGGCCTAAAGTCCAA agtttcttatttttgtcagtgacgctgtttggataaattttcttatccagCCAAAACTATGTCTGTGGGTCTATCACACTATTTATTACCAATTTA---------------AAAATCAGACGTGCAGGG------AGGGACAAACTAGTGCAGCAATACCTCTTGCAGCCTTATGGACATGAACCA---AGGTCCAAgtgacatttacaacaagcaaggtccaagcatgggccaccaccttgatgca #### Hpse2_ID8648_10 --> 0 - 2 Original Alignment GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACaa atcttcaaggagttacaatcaagccaattcctcttcttgtttgcacccagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGATAAACTAAGAATCTATTCTCACCGCACAAATCATCATaagtgagtttcagtattaggacccaggggggaggtgcccatttggaactagc Alignment from CESAR GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACaa atcttcaaggagttacaatcaagccaattcctcttcttgtttgcacccagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGATAAACTAAGAATCTATTCTCACCGCACAAATCATCATaagtgagtttcagtattaggacccaggggggaggtgcccatttggaactagc Alignment from Spaln_aa2Genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA atcttcaaggagttacaatcaagccaattcctcttcttgtttgcacccagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGATAAACTAAGAATCTATTCTCACCGCACAAATCATCATAAgtgagtttcagtattaggacccaggggggaggtgcccatttggaactagc Alignment from Spaln_nt2Genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA atcttcaaggagttacaatcaagccaattcctcttcttgtttgcacccagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGATAAACTAAGAATCTATTCTCACCGCACAAATCATCATAAgtgagtttcagtattaggacccaggggggaggtgcccatttggaactagc Alignment from Pairagon GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA atcttcaaggagttacaatcaagccaattcctcttcttgtttgcacccagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGATAAACTAAGAATCTATTCTCACCGCACAAATCATCATAAgtgagtttcagtattaggacccaggggggaggtgcccatttggaactagc Alignment from Exonerate_protein2genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAACCACAACTATGTCCGTGGCTCTAT atcttcaaggagttacaatcaagccaattcctcttcttgtttgcacccagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGATAAACTAAGAATCTATTCTCACCGCACAAATCATCATAAGTGAGTTTCAGTATTAGGACCCAGgggggaggtgcccatttggaactagc Alignment from Exonerate_coding2genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCAC atcttcaaggagttacaatcaagccaattcctcttcttgtttgcacccagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGATAAACTAAGAATCTATTCTCACCGCACAAATCATCATaagtgagtttcagtattaggacccaggggggaggtgcccatttggaactagc Alignment from GeneWise GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA atcttcaaggagttacaatcaagccaattcctcttcttgtttgcacccagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGATAAACTAAGAATCTATTCTCACCGCACAAATCATCATAAgtgagtttcagtattaggacccaggggggaggtgcccatttggaactagc #### Hpse2_ID8680_5 --> 2 - 2 Original Alignment agCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATgg aatgattgtaaatttagctttgtaatttttcagacatctctgtttttcagaaACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATTCGAGTTTACTCTAGGGCAAGCCTGTACGGCCCTAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATgggtaagttctcaacaagaaaaaatcgcaataaagggccttgaaattcagga Alignment from CESAR agCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATgg aatgattgtaaatttagctttgtaatttttcagacatctctgtttttcagaaACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATTCGAGTTTACTCTAGGGCAAGCCTGTACGGCCCTAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATgggtaagttctcaacaagaaaaaatcgcaataaagggccttgaaattcagga Alignment from Spaln_aa2Genome AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG aatgattgtaaatttagctttgtaatttttcagacatctctgtttttcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATTCGAGTTTACTCTAGGGCAAGCCTGTACGGCCCTAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaagttctcaacaagaaaaaatcgcaataaagggccttgaaattcagga Alignment from Spaln_nt2Genome AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG aatgattgtaaatttagctttgtaatttttcagacatctctgtttttcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATTCGAGTTTACTCTAGGGCAAGCCTGTACGGCCCTAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaagttctcaacaagaaaaaatcgcaataaagggccttgaaattcagga Alignment from Pairagon AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG aatgattgtaaatttagctttgtaatttttcagacatctctgtttttcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATTCGAGTTTACTCTAGGGCAAGCCTGTACGGCCCTAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaagttctcaacaagaaaaaatcgcaataaagggccttgaaattcagga Alignment from Exonerate_protein2genome AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG aatgattgtaaatttagctttgtaatttttcagacatctctgtttttcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATTCGAGTTTACTCTAGGGCAAGCCTGTACGGCCCTAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaagttctcaacaagaaaaaatcgcaataaagggccttgaaattcagga Alignment from Exonerate_coding2genome AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG aatgattgtaaatttagctttgtaatttttcagacatctctgtttttcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATTCGAGTTTACTCTAGGGCAAGCCTGTACGGCCCTAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaagttctcaacaagaaaaaatcgcaataaagggccttgaaattcagga Alignment from GeneWise AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG aatgattgtaaatttagctttgtaatttttcagacatctctgtttttcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATTCGAGTTTACTCTAGGGCAAGCCTGTACGGCCCTAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaagttctcaacaagaaaaaatcgcaataaagggccttgaaattcagga #### Hspa12a_ID12810_5 --> 0 - 0 Original Alignment GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG tttttttgcacatgctaatctatggttgtgatttttctcttctgtttcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTTGCTTACGCCCTGCAGTACTTTAAGGAGCAAGCTCTAAAGgtaagttctaagtcagtctactgatgatcttagttacttagtgggactga Alignment from CESAR GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG tttttttgcacatgctaatctatggttgtgatttttctcttctgtttcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTTGCTTACGCCCTGCAGTACTTTAAGGAGCAAGCTCTAAAGgtaagttctaagtcagtctactgatgatcttagttacttagtgggactga Alignment from Spaln_aa2Genome GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG tttttttgcacatgctaatctatggttgtgatttttctcttctgtttcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTTGCTTACGCCCTGCAGTACTTTAAGGAGCAAGCTCTAAAGgtaagttctaagtcagtctactgatgatcttagttacttagtgggactga Alignment from Spaln_nt2Genome GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG tttttttgcacatgctaatctatggttgtgatttttctcttctgtttcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTTGCTTACGCCCTGCAGTACTTTAAGGAGCAAGCTCTAAAGgtaagttctaagtcagtctactgatgatcttagttacttagtgggactga Alignment from Pairagon GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG tttttttgcacatgctaatctatggttgtgatttttctcttctgtttcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTTGCTTACGCCCTGCAGTACTTTAAGGAGCAAGCTCTAAAGgtaagttctaagtcagtctactgatgatcttagttacttagtgggactga Alignment from Exonerate_protein2genome GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG tttttttgcacatgctaatctatggttgtgatttttctcttctgtttcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTTGCTTACGCCCTGCAGTACTTTAAGGAGCAAGCTCTAAAGgtaagttctaagtcagtctactgatgatcttagttacttagtgggactga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG tttttttgcacatgctaatctatggttgtgatttttctcttctgtttcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTTGCTTACGCCCTGCAGTACTTTAAGGAGCAAGCTCTAAAGgtaagttctaagtcagtctactgatgatcttagttacttagtgggactga #### Hspa12a_ID12813_2 --> 2 - 0 Original Alignment aaACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG ccaagcaggcattagatatgcgaagataagattgcctcgctgtgttccagaaATAGCTCCTACCTCAACATATTCTTCACCAGCAAGGAGTCTCGGGGACACAGGAATAACTCCTCTATCCCCATCCCATATCTTGgtacgtggggtgaggtcatggtctgtttatagccctgtgtttgtgttcat Alignment from CESAR aaACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG ccaagcaggcattagatatgcgaagataagattgcctcgctgtgttccagaaATAGCTCCTACCTCAACATATTCTTCACCAGCAAGGAGTCTCGGGGACACAGGAATAACTCCTCTATCCCCATCCCATATCTTGgtacgtggggtgaggtcatggtctgtttatagccctgtgtttgtgttcat Alignment from Spaln_aa2Genome AAACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG ccaagcaggcattagatatgcgaagataagattgcctcgctgtgttccagAAATAGCTCCTACCTCAACATATTCTTCACCAGCAAGGAGTCTCGGGGACACAGGAATAACTCCTCTATCCCCATCCCATATCTTGgtacgtggggtgaggtcatggtctgtttatagccctgtgtttgtgttcat Alignment from Spaln_nt2Genome AAACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG ccaagcaggcattagatatgcgaagataagattgcctcgctgtgttccagAAATAGCTCCTACCTCAACATATTCTTCACCAGCAAGGAGTCTCGGGGACACAGGAATAACTCCTCTATCCCCATCCCATATCTTGgtacgtggggtgaggtcatggtctgtttatagccctgtgtttgtgttcat Alignment from Pairagon AAACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG ccaagcaggcattagatatgcgaagataagattgcctcgctgtgttccagAAATAGCTCCTACCTCAACATATTCTTCACCAGCAAGGAGTCTCGGGGACACAGGAATAACTCCTCTATCCCCATCCCATATCTTGgtacgtggggtgaggtcatggtctgtttatagccctgtgtttgtgttcat Alignment from Exonerate_protein2genome AAACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG ccaagcaggcattagatatgcgaagataagattgcctcgctgtgttccagAAATAGCTCCTACCTCAACATATTCTTCACCAGCAAGGAGTCTCGGGGACACAGGAATAACTCCTCTATCCCCATCCCATATCTTGgtacgtggggtgaggtcatggtctgtttatagccctgtgtttgtgttcat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG ccaagcaggcattagatatgcgaagataagattgcctcgctgtgttccagAAATAGCTCCTACCTCAACATATTCTTCACCAGCAAGGAGTCTCGGGGACACAGGAATAACTCCTCTATCCCCATCCCATATCTTGgtacgtggggtgaggtcatggtctgtttatagccctgtgtttgtgttcat #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg tatcccatagtcttatgtttatgagttcgtgacaggtcttctgtctttagatAAAGTGCTGTTATGTTATTATGAGTCACCCTGTCCTGCAAGTCAGTCTggtaacccagtcagggaggtagaatggagctcagagtgtctatatagatct Alignment from CESAR acCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg tatcccatagtcttatgtttatgagttcgtgacaggtcttctgtctttagatAAAGTGCTGTTATGTTATTATGAGTCACCCTGTCCTGCAAGTCAGTCTggtaacccagtcagggaggtagaatggagctcagagtgtctatatagatct Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG tatcccatagtcttatgtttatgagttcgtgacaggtcttctgtctttagATAAAGTGCTGTTATGTTATTATGAGTCACCCTGTCCTGCAAGTCAGTCTGgtaacccagtcagggaggtagaatggagctcagagtgtctatatagatct Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG tatcccatagtcttatgtttatgagttcgtgacaggtcttctgtctttagATAAAGTGCTGTTATGTTATTATGAGTCACCCTGTCCTGCAAGTCAGTCTGgtaacccagtcagggaggtagaatggagctcagagtgtctatatagatct Alignment from Pairagon ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG tatcccatagtcttatgtttatgagttcgtgacaggtcttctgtctttagATAAAGTGCTGTTATGTTATTATGAGTCACCCTGTCCTGCAAGTCAGTCTGgtaacccagtcagggaggtagaatggagctcagagtgtctatatagatct Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG tatcccatagtcttatgtttatgagttcgtgacaggtcttctgtctttagATAAAGTGCTGTTATGTTATTATGAGTCACCCTGTCCTGCAAGTCAGTCTGgtaacccagtcagggaggtagaatggagctcagagtgtctatatagatct Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG tatcccatagtcttatgtttatgagttcgtgacaggtcttctgtctttagATAAAGTGCTGTTATGTTATTATGAGTCACCCTGTCCTGCAAGTCAGTCTGgtaacccagtcagggaggtagaatggagctcagagtgtctatatagatct Alignment from GeneWise ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG tatcccatagtcttatgtttatgagttcgtgacaggtcttctgtctttagATAAAGTGCTGTTATGTTATTATGAGTCACCCTGTCCTGCAAGTCAGTCTGgtaacccagtcagggaggtagaatggagctcagagtgtctatatagatct #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG caacgaggtaagtggtgctgtgggggagtgttctgtccactccaccccagGAGGAGAAGCAGCACCTGGCTAAGCAGGAGTCACCAGAGCAACAGGCATGGAAAGCAAAGGAGGTCGCAGCAGCCAGAAGGGTGCTGAACATGATGGTGGATGTAAGAgtgattgctgagagttaggacccaaatcagacatatgcttactgtgaatg Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG caacgaggtaagtggtgctgtgggggagtgttctgtccactccaccccagGAGGAGAAGCAGCACCTGGCTAAGCAGGAGTCACCAGAGCAACAGGCATGGAAAGCAAAGGAGGTCGCAGCAGCCAGAAGGGTGCTGAACATGATGGTGGATGTAAGAgtgattgctgagagttaggacccaaatcagacatatgcttactgtgaatg Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG caacgaggtaagtggtgctgtgggggagtgttctgtccactccaccccagGAGGAGAAGCAGCACCTGGCTAAGCAGGAGTCACCAGAGCAACAGGCATGGAAAGCAAAGGAGGTCGCAGCAGCCAGAAGGGTGCTGAACATGATGGTGGATGTAAGAgtgattgctgagagttaggacccaaatcagacatatgcttactgtgaatg Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG caacgaggtaagtggtgctgtgggggagtgttctgtccactccaccccagGAGGAGAAGCAGCACCTGGCTAAGCAGGAGTCACCAGAGCAACAGGCATGGAAAGCAAAGGAGGTCGCAGCAGCCAGAAGGGTGCTGAACATGATGGTGGATGTAAGAgtgattgctgagagttaggacccaaatcagacatatgcttactgtgaatg Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGAT caacgaggtaagtggtgctgtgggggagtgttctgtccactccaccccagGAGGAGAAGCAGCACCTGGCTAAGCAGGAGTCACCAGAGCAACAGGCATGGAAAGCAAAGGAGGTCGCAGCAGCCAGAAGGGTGCTGAACATGATGGTGGATgtaagagtgattgctgagagttaggacccaaatcagacatatgcttactgtgaatg Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG caacgaggtaagtggtgctgtgggggagtgttctgtccactccaccccagGAGGAGAAGCAGCACCTGGCTAAGCAGGAGTCACCAGAGCAACAGGCATGGAAAGCAAAGGAGGTCGCAGCAGCCAGAAGGGTGCTGAACATGATGGTGGATGTAAGAgtgattgctgagagttaggacccaaatcagacatatgcttactgtgaatg Alignment from Exonerate_coding2genome caacgaggtaagtggtgctgtgggggagtgttctgtccactccaccccaggaggagaagcagcacctggctaagcaggagtcaccagagcaacaggcatggaaagcaaaggaggtcgcagcagccagaagggtgctgaacatgatggtggatgtaagagtgattgctgagagttaggacccaaatcagacatatgcttactgtgaatg Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG caacgaggtaagtggtgctgtgggggagtgttctgtccactccaccccagGAGGAGAAGCAGCACCTGGCTAAGCAGGAGTCACCAGAGCAACAGGCATGGAAAGCAAAGGAGGTCGCAGCAGCCAGAAGGGTGCTGAACATGATGGTGGATGTAAGAgtgattgctgagagttaggacccaaatcagacatatgcttactgtgaatg #### Incenp_ID2606_13 --> 0 - 2 Original Alignment GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGag gccatcaacaatgacactgatacttctcctcactattgctcttctcacagGAGGAGGAGGAATGGCATCACCAAGAAATGCTACAACGGAGAAATGAGGAAAAAGAAGAGCGCTGCAAGGTTGCGAAGGCC------CTGGCGGAGCAGCATGAACAGGAA---CACAGAGAGCCACAACGTCGAGAACAGGAGCAAAGGGAACAGGACTGCAGGGAACAAGAACGGAAGGAGCAGGAACAG---GAACAGGAACAAGAGCGCCTTCGGGCTGAAaggttagggttatgatcattggctgctgggcgataatagggatgtggtcaca Alignment from CESAR GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGag gccatcaacaatgacactgatacttctcctcactattgctcttctcacagGAGGAGGAGGAATGGCATCACCAAGAAATGCTACAACGGAGAAATGAGGAAAAAGAAGAGCGCTGCAAGGTTGCGAAGGCC------CTGGCGGAGCAGCATGAACAGGAA---CACAGAGAGCCACAACGTCGAGAACAGGAGCAAAGGGAACAGGACTGCAGGGAACAAGAACGGAAGGAGCAGGAA---CAGGAACAGGAACAAGAGCGCCTTCGGGCTGAAaggttagggttatgatcattggctgctgggcgataatagggatgtggtcaca Alignment from Spaln_aa2Genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAG------------CAGGAGCAGGAGCGTCTTCGGGCCAAGAG gccatcaacaatgacactgatacttctcctcactattgctcttctcacagGAGGAGGAGGAATGGCATCACCAAGAAATGCTACAACGGAGAAATGAGGAAAAAGAAGAGCGCTGCAAGGTTGCGAAGGCC------CTGGCGGAGCAG------------------CATGAACAGGAACACAGAGAGCCACAACGTCGAGAACAGGAGCAAAGGGAACAGGACTGCAGGGAACAAGAACGGAAGGAGCAGGAACAGGAACAGGAACAAGAGCGCCTTCGGGCTGAAAGgttagggttatgatcattggctgctgggcgataatagggatgtggtcaca Alignment from Spaln_nt2Genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG gccatcaacaatgacactgatacttctcctcactattgctcttctcacagGAGGAGGAGGAATGGCATCACCAAGAAATGCTACAACGGAGAAATGAGGAAAAAGAAGAGCGCTGCAAGGTTGCGAAGGC------CCTGGCGGAGCAGCATGAACAGGA---ACACAGAGAGCCACAACGTCGAGAACAGGAGCAAAGGGAACAGGACTGCAGGGAACAAGAACGGAAGGAGCAGGA---ACAGGAACAGGAACAAGAGCGCCTTCGGGCTGAAAGgttagggttatgatcattggctgctgggcgataatagggatgtggtcaca Alignment from Pairagon GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAG------------------------GAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG gccatcaacaatgacactgatacttctcctcactattgctcttctcacagGAGGAGGAGGAATGGCATCACCAAGAAATGCTACAACGGAGAAATGAGGAAAAAGAAGAGCGCTGCAAGGTTGCGAAGGC------CCTGGC---------------------------GGAGCAGCATGAACAGGAACACAGAGAGCCACAACGTCGAGAACAGGAGCAAAGGGAACAGGACTGCAGGGAACAAGAACGGAAGGAGCAGGA---ACAGGAACAGGAACAAGAGCGCCTTCGGGCTGAAAGgttagggttatgatcattggctgctgggcgataatagggatgtggtcaca Alignment from Exonerate_protein2genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG gccatcaacaatgacactgatacttctcctcactattgctcttctcacagGAGGAGGAGGAATGGCATCACCAAGAAATGCTACAACGGAGAAATGAGGAAAAAGAAGAGCGCTGCAAGGTTGCGAAGGCC------CTGGCGGAGCAGCATGAACAGGAA---CACAGAGAGCCACAACGTCGAGAACAGGAGCAAAGGGAACAGGACTGCAGGGAACAAGAACGGAAGGAGCAGGAA---CAGGAACAGGAACAAGAGCGCCTTCGGGCTGAAAGgttagggttatgatcattggctgctgggcgataatagggatgtggtcaca Alignment from Exonerate_coding2genome gccatcaacaatgacactgatacttctcctcactattgctcttctcacaggaggaggaggaatggcatcaccaagaaatgctacaacggagaaatgaggaaaaagaagagcgctgcaaggttgcgaaggccctggcggagcagcatgaacaggaacacagagagccacaacgtcgagaacaggagcaaagggaacaggactgcagggaacaagaacggaaggagcaggaacaggaacaggaacaagagcgccttcgggctgaaaggttagggttatgatcattggctgctgggcgataatagggatgtggtcaca Alignment from GeneWise GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG gccatcaacaatgacactgatacttctcctcactattgctcttctcacagGAGGAGGAGGAATGGCATCACCAAGAAATGCTACAACGGAGAAATGAGGAAAAAGAAGAGCGCTGCAAGGTTGCGAAGGCC------CTGGCGGAGCAGCATGAACAGGAACACAGA---GAGCCACAACGTCGAGAACAGGAGCAAAGGGAACAGGACTGCAGGGAACAAGAACGGAAGGAGCAGGAA---CAGGAACAGGAACAAGAGCGCCTTCGGGCTGAAAGgttagggttatgatcattggctgctgggcgataatagggatgtggtcaca #### Incenp_ID2607_12 --> 0 - 0 Original Alignment GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gtttatgcactcacaaactgttttgtagcgtttttcatatctgttcacagGCTGCAGCGGCTTGTCTGACTGAGAAGGTGAAAAAGAAGGCAATTACTAAA------GAAGAGGTGGAGGCAAAAAGGAGA---GAAAAGGAAGCCCATCAGCTAAGGTGGGTCCAACAAgcaaggctaactgaacatattattagttcacaccatctgtggtggcctcc Alignment from CESAR GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gtttatgcactcacaaactgttttgtagcgtttttcatatctgttcacagGCTGCAGCGGCTTGTCTGACTGAGAAGGTGAAAAAGAAGGCAATTACTAAA------GAAGAGGTGGAGGCAAAAAGGAGA---GAAAAGGAAGCCCATCAGCTAAGGTGGGTCCAACAAgcaaggctaactgaacatattattagttcacaccatctgtggtggcctcc Alignment from Spaln_aa2Genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gtttatgcactcacaaactgttttgtagcgtttttcatatctgttcacagGCTGCAGCGGCTTGTCTGACTGAGAAGGTGAAAAAGAAGGCAATTACTAAA------GAAGAGGTGGAGGCAAAAAGGAGA---GAAAAGGAAGCCCATCAGCTAAGGTGGGTCCAACAAgcaaggctaactgaacatattattagttcacaccatctgtggtggcctcc Alignment from Spaln_nt2Genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gtttatgcactcacaaactgttttgtagcgtttttcatatctgttcacagGCTGCAGCGGCTTGTCTGACTGAGAAGGTGAAAAAGAAGGCAATTACTAA------AGAAGAGGTGGAGGCAAAAAGGA---GAGAAAAGGAAGCCCATCAGCTAAGGTGGGTCCAACAAgcaaggctaactgaacatattattagttcacaccatctgtggtggcctcc Alignment from Pairagon GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAG------------------GCTCAGGTGGCTCCAACAG gtttatgcactcacaaactgttttgtagcgtttttcatatctgttcacagGCTGCAGCGGCTTGTCTGACTGAGAAGGTGAAAAAGAAGGCAATTACTAA------AGAAGAGGTGGAGGCAAAAAGG---------------------AGAGAAAAGGAAGCCCATCAGCTAAGGTGGGTCCAACAAgcaaggctaactgaacatattattagttcacaccatctgtggtggcctcc Alignment from Exonerate_protein2genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gtttatgcactcacaaactgttttgtagcgtttttcatatctgttcacagGCTGCAGCGGCTTGTCTGACTGAGAAGGTGAAAAAGAAGGCAATTACTAAA------GAAGAGGTGGAGGCAAAAAGGAGA---GAAAAGGAAGCCCATCAGCTAAGGTGGGTCCAACAAgcaaggctaactgaacatattattagttcacaccatctgtggtggcctcc Alignment from Exonerate_coding2genome gtttatgcactcacaaactgttttgtagcgtttttcatatctgttcacaggctgcagcggcttgtctgactgagaaggtgaaaaagaaggcaattactaaagaagaggtggaggcaaaaaggagagaaaaggaagcccatcagctaaggtgggtccaacaagcaaggctaactgaacatattattagttcacaccatctgtggtggcctcc Alignment from GeneWise GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGG gtttatgcactcacaaactgttttgtagcgtttttcatatctgttcacagGCTGCAGCGGCTTGTCTGACTGAGAAGGTGAAAAAGAAGGCAATTACTAAA------GAAGAGGTGGAGGCAAAAAGGAGA---GAAAAGGAAGCCCATCAGCTAAGGTGGgtccaacaagcaaggctaactgaacatattattagttcacaccatctgtggtggcctcc #### Incenp_ID2609_10 --> 0 - 2 Original Alignment GAGAAGGAGCGCCAGCGCCTAGAGAGCCTGCGACGGAAGGAGGAGGCCGAGCAGCGGCGCAGACAGAAGGTAGAGGAAGACAAGCGGCGGCGACTGGAGGAGGTGAAGct gctggtgaaggtcccaatctacatcttatccctcctgtctccttgctcagGAGATGGAACGTCAGCAATTGGAGAGCCTGCAACGGAAGGAAGAGGCTGAACAACAGCGCAGAAAGAAAGTAGACGAAGACAGGCGGCAGCAACTTGAGGAAGTGAAGctgtatccgctgagccattcagaatttgcagagactctttgtgactccaccc Alignment from CESAR GAGAAGGAGCGCCAGCGCCTAGAGAGCCTGCGACGGAAGGAGGAGGCCGAGCAGCGGCGCAGACAGAAGGTAGAGGAAGACAAGCGGCGGCGACTGGAGGAGGTGAAGct gctggtgaaggtcccaatctacatcttatccctcctgtctccttgctcagGAGATGGAACGTCAGCAATTGGAGAGCCTGCAACGGAAGGAAGAGGCTGAACAACAGCGCAGAAAGAAAGTAGACGAAGACAGGCGGCAGCAACTTGAGGAAGTGAAGctgtatccgctgagccattcagaatttgcagagactctttgtttgtctctgc Alignment from Spaln_aa2Genome GAGAAGGAGCGCCAGCGCCTAGAGAGCCTGCGACGGAAGGAGGAGGCCGAGCAGCGGCGCAGACAGAAGGTAGAGGAAGACAAGCGGCGGCGACTGGAGGAGGTGAAGCT gctggtgaaggtcccaatctacatcttatccctcctgtctccttgctcagGAGATGGAACGTCAGCAATTGGAGAGCCTGCAACGGAAGGAAGAGGCTGAACAACAGCGCAGAAAGAAAGTAGACGAAGACAGGCGGCAGCAACTTGAGGAAGTGAAGCTgtatccgctgagccattcagaatttgcagagactctttgtgactccaccc Alignment from Spaln_nt2Genome GAGAAGGAGCGCCAGCGCCTAGAGAGCCTGCGACGGAAGGAGGAGGCCGAGCAGCGGCGCAGACAGAAGGTAGAGGAAGACAAGCGGCGGCGACTGGAGGAGGTGAAGCT gctggtgaaggtcccaatctacatcttatccctcctgtctccttgctcagGAGATGGAACGTCAGCAATTGGAGAGCCTGCAACGGAAGGAAGAGGCTGAACAACAGCGCAGAAAGAAAGTAGACGAAGACAGGCGGCAGCAACTTGAGGAAGTGAAGCTgtatccgctgagccattcagaatttgcagagactctttgtgactccaccc Alignment from Pairagon GAGAAGGAGCGCCAGCGCCTAGAGAGCCTGCGACGGAAGGAGGAGGCCGAGCAGCGGCGCAGACAGAAGGTAGAGGAAGACAAGCGGCGGCGACTGGAGGAGGTGAAGCT gctggtgaaggtcccaatctacatcttatccctcctgtctccttgctcagGAGATGGAACGTCAGCAATTGGAGAGCCTGCAACGGAAGGAAGAGGCTGAACAACAGCGCAGAAAGAAAGTAGACGAAGACAGGCGGCAGCAACTTGAGGAAGTGAAGCTgtatccgctgagccattcagaatttgcagagactctttgtgactccaccc Alignment from Exonerate_protein2genome GAGAAGGAGCGCCAGCGCCTAGAGAGCCTGCGACGGAAGGAGGAGGCCGAGCAGCGGCGCAGACAGAAGGTAGAGGAAGACAAGCGGCGGCGACTGGAGGAGGTGAAGCT gctggtgaaggtcccaatctacatcttatccctcctgtctccttgctcagGAGATGGAACGTCAGCAATTGGAGAGCCTGCAACGGAAGGAAGAGGCTGAACAACAGCGCAGAAAGAAAGTAGACGAAGACAGGCGGCAGCAACTTGAGGAAGTGAAGCTgtatccgctgagccattcagaatttgcagagactctttgtgactccaccc Alignment from Exonerate_coding2genome GAGAAGGAGCGCCAGCGCCTAGAGAGCCTGCGACGGAAGGAGGAGGCCGAGCAGCGGCGCAGACAGAAGGTAGAGGAAGACAAGCGGCGGCGACTGGAGGAGGTGAAGCT gctggtgaaggtcccaatctacatcttatccctcctgtctccttgctcagGAGATGGAACGTCAGCAATTGGAGAGCCTGCAACGGAAGGAAGAGGCTGAACAACAGCGCAGAAAGAAAGTAGACGAAGACAGGCGGCAGCAACTTGAGGAAGTGAAGCTgtatccgctgagccattcagaatttgcagagactctttgtgactccaccc Alignment from GeneWise GAGAAGGAGCGCCAGCGCCTAGAGAGCCTGCGACGGAAGGAGGAGGCCGAGCAGCGGCGCAGACAGAAGGTAGAGGAAGACAAGCGGCGGCGACTGGAGGAGGTGAAGCT gctggtgaaggtcccaatctacatcttatccctcctgtctccttgctcagGAGATGGAACGTCAGCAATTGGAGAGCCTGCAACGGAAGGAAGAGGCTGAACAACAGCGCAGAAAGAAAGTAGACGAAGACAGGCGGCAGCAACTTGAGGAAGTGAAGCTgtatccgctgagccattcagaatttgcagagactctttgtgactccaccc #### Incenp_ID2616_3 --> 1 - 1 Original Alignment gTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGG---CACCTCCGCAGCAAGCCCGTTACTATTGTTGAG------GAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCA------GCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTG---GAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCA---GAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAAT------------GGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTt attcttcctctggaagccctatgttgtgtttctattttccgttcttttagaTTGTCACACAGAAAGTCACAAAGTAGCCTGGTGGGTAGCCGTCGATATATCAGGGGTAAACCTGTCATAATTGCTGAAGTTGATGAGAATGGTTTTCCTGTTCTGCAGTGGATAACTCATGCGAAAGCAGCAGCAGCGGCGGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGTTCCCCTATAGTACTGACTAAGAAGGCAGTGGTAGAAGAGATAAGTACAGGTGAACGACTGAGTGCG---CTACAGCTCACTAAGCTAAAAGACAGCTTGCCA---TCACCTGTTTCTCATGGCACACTGACCTCTGATAAGGAATTGACACCCAAAAAGTCAGAAGAGTCAGGAAAACTTGATTCTGTTATGGTAAATTCCCTGATGGCTACACCTCGGAGCCCCAGGAACCGAGGAGTTGGAGAAGGACGGTCTGTCTCCAAACTAAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGATTA---GAGTTA------GAAGAGCAGGTGCTCTCCCCGATTTTGCTGAACAATATCTTACCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTG---TCTCAGGATTCCCAAGTGCCACTGGCATCAAAGTATAACTTGGTGGCAAAACAAAAGAAAAAGAATGAGAATGGGACTCGCAGGTCTAGGAGGAGTGTTGCAAAACAAGCATCCAAGGAGCCCAAGGCTTCGGCTCAAATCATTtgtaagtgagacactcgggctgatgtggattaagactattgtaagtcatcc Alignment from CESAR gTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACC---CGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCA------GCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTG---GAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCA---GAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAA------------GAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTt attcttcctctggaagccctatgttgtgtttctattttccgttcttttagaTTGTCACACAGAAAGTCACAAAGTAGCCTGGTGGGTAGCCGTCGATATATCAGGGGTAAACCTGTCATAATTGCTGAAGTTGATGAGAATGGTTTTCCTGTTCTGCAGTGGATAACTCATGCGAAAGCAGCAGCAGCGGCGGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGTTCCCCTATAGTACTGACTAAGAAGGCAGTGGTAGAAGAGATAAGTACAGGTGAACGACTGAGTGCG---CTACAGCTCACTAAGCTAAAAGACAGCTTG---CCATCACCTGTTTCTCATGGCACACTGACCTCTGATAAGGAATTGACACCCAAAAAGTCAGAAGAGTCAGGAAAACTTGATTCTGTTATGGTAAATTCCCTGATGGCTACACCTCGGAGCCCCAGGAACCGAGGAGTTGGAGAAGGACGGTCTGTCTCCAAACTAAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGA---------TTAGAGTTAGAAGAGCAGGTGCTCTCCCCGATTTTGCTGAACAATATCTTACCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTG---TCTCAGGATTCCCAAGTGCCACTGGCATCAAAGTATAACTTGGTGGCAAAACAAAAGAAAAAGAATGAGAATGGGACTCGCAGGTCTAGGAGGAGTGTTGCAAAACAAGCATCCAAGGAGCCCAAGGCTTCGGCTCAAATCATTtgtaagtgagacactcgggctgatgtggattaagactattgtaagtcatcc Alignment from Spaln_aa2Genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACC---CGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCT------GCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAA------------GAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT attcttcctctggaagccctatgttgtgtttctattttccgttcttttagATTGTCACACAGAAAGTCACAAAGTAGCCTGGTGGGTAGCCGTCGATATATCAGGGGTAAACCTGTCATAATTGCTGAAGTTGATGAGAATGGTTTTCCTGTTCTGCAGTGGATAACTCATGCGAAAGCAGCAGCAGCGGCGGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGTTCCCCTATAGTACTGACTAAGAAGGCAGTGGTAGAAGAGATAAGTACAGGTGAACGACTGAGTGCGCTACAGCTCACTAAGCTAAAAGACAGCTTGCCATCACCTGTTTCTCATGGCACACTGACCTCTGATAAGGAATTGACACCCAAAAAGTCAGAAGAGTCAGGAAAACTTGATTCTGTTATGGTAAATTCCCTGATGGCTACACCTCGGAGCCCCAGGAACCGAGGAGTTGGAGAAGGACGGTCTGTCTCCAAACTAAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGATTAGAG---------TTAGAAGAGCAGGTGCTCTCCCCGATTTTGCTGAACAATATCTTACCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTG---TCTCAGGATTCCCAAGTGCCACTGGCATCAAAGTATAACTTGGTGGCAAAACAAAAGAAAAAGAATGAGAATGGGACTCGCAGGTCTAGGAGGAGTGTTGCAAAACAAGCATCCAAGGAGCCCAAGGCTTCGGCTCAAATCATTTgtaagtgagacactcgggctgatgtggattaagactattgtaagtcatcc Alignment from Spaln_nt2Genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGC---ACCTCCGCAGCAAGCCCGTTACTATTG------TTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCA------GCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTG---GAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGG---CTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAA------------GAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT attcttcctctggaagccctatgttgtgtttctattttccgttcttttagATTGTCACACAGAAAGTCACAAAGTAGCCTGGTGGGTAGCCGTCGATATATCAGGGGTAAACCTGTCATAATTGCTGAAGTTGATGAGAATGGTTTTCCTGTTCTGCAGTGGATAACTCATGCGAAAGCAGCAGCAGCGGCGGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGTTCCCCTATAGTACTGACTAAGAAGGCAGTGGTAGAAGAGATAAGTACAGGTGAACGACTGAGTGC---GCTACAGCTCACTAAGCTAAAAGACAGCTT---GCCATCACCTGTTTCTCATGGCACACTGACCTCTGATAAGGAATTGACACCCAAAAAGTCAGAAGAGTCAGGAAAACTTGATTCTGTTATGGTAAATTCCCTGATGGCTACACCTCGGAGCCCCAGGAACCGAGGAGTTGGAGAAGGACGGTCTGTCTCCAAACTAAAGATTGCACAGGCATCCTGGGG------AGACTCCCCTGGAT-TAGAG--------TTAGAAGAGCAGGTGCTCTCCCCGATTTTGCTGAACAATATCTTACCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTG---TCTCAGGATTCCCAAGTGCCACTGGCATCAAAGTATAACTTGGTGGCAAAACAAAAGAAAAAGAATGAGAATGGGACTCGCAGGTCTAGGAGGAGTGTTGCAAAACAAGCATCCAAGGAGCCCAAGGCTTCGGCTCAAATCATTTgtaagtgagacactcgggctgatgtggattaagactattgtaagtcatcc Alignment from Pairagon GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------------------------------------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCG------GCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGT---GGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGG---CTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGG----------CAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAA------------GAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT attcttcctctggaagccctatgttgtgtttctattttccgttcttttagATTGTCACACAGAAAGTCACAAAGTAGCCTGGTGGGTAGCCG---------------------------TCGATATATCAGGGGTAAACCTGTCATAATTGCTGAAGTTGATGAGAATGGTTTTCCTGTTCTGCAGTGGATAACTCATGCGAAAGCAGCAGCAGCGGCGGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGTTCCCCTATAGTACTGACTAAGAAGGCAGTGGTAGAAGAGATAAGTACAGGTGAACGACTGAGTGC---GCTACAGCTCACTAAGCTAAAAGACAGCTT---GCCATCACCTGTTTCTCATGGCACACTGACCTCTGATAAGGAATTGACACCCAAAAAGTCAGAAGAGTCAGGAAAACTTGATTCTGTTATGGTAAATTCCCTGATGGCTACACCTCGGAGCCCCAGGAACCGAGGAGTTGGAGAAGGACGGTCTGTCTCCAAACTAAAGATTGCACAGGCATCCTGGGG------------------------AGACTC-CCCTGGATTAGAGTTAGAAGAGCAGGTGCTCTCCCCGATTTTGCTGAACAATATCTTACCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTG---TCTCAGGATTCCCAAGTGCCACTGGCATCAAAGTATAACTTGGTGGCAAAACAAAAGAAAAAGAATGAGAATGGGACTCGCAGGTCTAGGAGGAGTGTTGCAAAACAAGCATCCAAGGAGCCCAAGGCTTCGGCTCAAATCATTTgtaagtgagacactcgggctgatgtggattaagactattgtaagtcatcc Alignment from Exonerate_protein2genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACC---CGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCG------GCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTG---GAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCA---GAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAA------------GAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT attcttcctctggaagccctatgttgtgtttctattttccgttcttttagATTGTCACACAGAAAGTCACAAAGTAGCCTGGTGGGTAGCCGTCGATATATCAGGGGTAAACCTGTCATAATTGCTGAAGTTGATGAGAATGGTTTTCCTGTTCTGCAGTGGATAACTCATGCGAAAGCAGCAGCAGCGGCGGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGTTCCCCTATAGTACTGACTAAGAAGGCAGTGGTAGAAGAGATAAGTACAGGTGAACGACTGAGTGCG---CTACAGCTCACTAAGCTAAAAGACAGCTTG---CCATCACCTGTTTCTCATGGCACACTGACCTCTGATAAGGAATTGACACCCAAAAAGTCAGAAGAGTCAGGAAAACTTGATTCTGTTATGGTAAATTCCCTGATGGCTACACCTCGGAGCCCCAGGAACCGAGGAGTTGGAGAAGGACGGTCTGTCTCCAAACTAAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGA---------TTAGAGTTAGAAGAGCAGGTGCTCTCCCCGATTTTGCTGAACAATATCTTACCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTG---TCTCAGGATTCCCAAGTGCCACTGGCATCAAAGTATAACTTGGTGGCAAAACAAAAGAAAAAGAATGAGAATGGGACTCGCAGGTCTAGGAGGAGTGTTGCAAAACAAGCATCCAAGGAGCCCAAGGCTTCGGCTCAAATCATTTgtaagtgagacactcgggctgatgtggattaagactattgtaagtcatcc Alignment from Exonerate_coding2genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACC---CGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCG------GCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTG---GAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCA---GAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAA------------GAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT attcttcctctggaagccctatgttgtgtttctattttccgttcttttagATTGTCACACAGAAAGTCACAAAGTAGCCTGGTGGGTAGCCGTCGATATATCAGGGGTAAACCTGTCATAATTGCTGAAGTTGATGAGAATGGTTTTCCTGTTCTGCAGTGGATAACTCATGCGAAAGCAGCAGCAGCGGCGGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGTTCCCCTATAGTACTGACTAAGAAGGCAGTGGTAGAAGAGATAAGTACAGGTGAACGACTGAGTGCG---CTACAGCTCACTAAGCTAAAAGACAGCTTG---CCATCACCTGTTTCTCATGGCACACTGACCTCTGATAAGGAATTGACACCCAAAAAGTCAGAAGAGTCAGGAAAACTTGATTCTGTTATGGTAAATTCCCTGATGGCTACACCTCGGAGCCCCAGGAACCGAGGAGTTGGAGAAGGACGGTCTGTCTCCAAACTAAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGA---------TTAGAGTTAGAAGAGCAGGTGCTCTCCCCGATTTTGCTGAACAATATCTTACCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTG---TCTCAGGATTCCCAAGTGCCACTGGCATCAAAGTATAACTTGGTGGCAAAACAAAAGAAAAAGAATGAGAATGGGACTCGCAGGTCTAGGAGGAGTGTTGCAAAACAAGCATCCAAGGAGCCCAAGGCTTCGGCTCAAATCATTTgtaagtgagacactcgggctgatgtggattaagactattgtaagtcatcc Alignment from GeneWise GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGG---CACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCA------GCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAG---ATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAG---GCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAA------------GAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT attcttcctctggaagccctatgttgtgtttctattttccgttcttttagATTGTCACACAGAAAGTCACAAAGTAGCCTGGTGGGTAGCCGTCGATATATCAGGGGTAAACCTGTCATAATTGCTGAAGTTGATGAGAATGGTTTTCCTGTTCTGCAGTGGATAACTCATGCGAAAGCAGCAGCAGCGGCGGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGTTCCCCTATAGTACTGACTAAGAAGGCAGTGGTAGAAGAGATAAGTACAGGTGAACGACTGAGTGCG---CTACAGCTCACTAAGCTAAAAGACAGCTTGCCA---TCACCTGTTTCTCATGGCACACTGACCTCTGATAAGGAATTGACACCCAAAAAGTCAGAAGAGTCAGGAAAACTTGATTCTGTTATGGTAAATTCCCTGATGGCTACACCTCGGAGCCCCAGGAACCGAGGAGTTGGAGAAGGACGGTCTGTCTCCAAACTAAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGATTAGAG---------TTAGAAGAGCAGGTGCTCTCCCCGATTTTGCTGAACAATATCTTACCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTG---TCTCAGGATTCCCAAGTGCCACTGGCATCAAAGTATAACTTGGTGGCAAAACAAAAGAAAAAGAATGAGAATGGGACTCGCAGGTCTAGGAGGAGTGTTGCAAAACAAGCATCCAAGGAGCCCAAGGCTTCGGCTCAAATCATTTgtaagtgagacactcgggctgatgtggattaagactattgtaagtcatcc #### Jak2_ID6232_8 --> 1 - 0 Original Alignment aATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG ggcttatatcggcaaaatatacagccccccgtcttgttgctcctgtttagaATGGATTTTGCCCTTAGCAAACTTAATAAGGCAGGTAATCAAACTGGTCTATATGTGCTACGATGTAGCCCTAAAGACTTCAACAAATACTTTCTGACTTTTGCTGTGGAGgtgagttggttatcaccaaagagtaggtaaccatttgtgctttcattggc Alignment from CESAR aATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG ggcttatatcggcaaaatatacagccccccgtcttgttgctcctgtttagaATGGATTTTGCCCTTAGCAAACTTAATAAGGCAGGTAATCAAACTGGTCTATATGTGCTACGATGTAGCCCTAAAGACTTCAACAAATACTTTCTGACTTTTGCTGTGGAGgtgagttggttatcaccaaagagtaggtaaccatttgtgctttcattggc Alignment from Spaln_aa2Genome AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG ggcttatatcggcaaaatatacagccccccgtcttgttgctcctgtttagAATGGATTTTGCCCTTAGCAAACTTAATAAGGCAGGTAATCAAACTGGTCTATATGTGCTACGATGTAGCCCTAAAGACTTCAACAAATACTTTCTGACTTTTGCTGTGGAGgtgagttggttatcaccaaagagtaggtaaccatttgtgctttcattggc Alignment from Spaln_nt2Genome AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG ggcttatatcggcaaaatatacagccccccgtcttgttgctcctgtttagAATGGATTTTGCCCTTAGCAAACTTAATAAGGCAGGTAATCAAACTGGTCTATATGTGCTACGATGTAGCCCTAAAGACTTCAACAAATACTTTCTGACTTTTGCTGTGGAGgtgagttggttatcaccaaagagtaggtaaccatttgtgctttcattggc Alignment from Pairagon AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG ggcttatatcggcaaaatatacagccccccgtcttgttgctcctgtttagAATGGATTTTGCCCTTAGCAAACTTAATAAGGCAGGTAATCAAACTGGTCTATATGTGCTACGATGTAGCCCTAAAGACTTCAACAAATACTTTCTGACTTTTGCTGTGGAGgtgagttggttatcaccaaagagtaggtaaccatttgtgctttcattggc Alignment from Exonerate_protein2genome AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG ggcttatatcggcaaaatatacagccccccgtcttgttgctcctgtttagAATGGATTTTGCCCTTAGCAAACTTAATAAGGCAGGTAATCAAACTGGTCTATATGTGCTACGATGTAGCCCTAAAGACTTCAACAAATACTTTCTGACTTTTGCTGTGGAGgtgagttggttatcaccaaagagtaggtaaccatttgtgctttcattggc Alignment from Exonerate_coding2genome AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG ggcttatatcggcaaaatatacagccccccgtcttgttgctcctgtttagAATGGATTTTGCCCTTAGCAAACTTAATAAGGCAGGTAATCAAACTGGTCTATATGTGCTACGATGTAGCCCTAAAGACTTCAACAAATACTTTCTGACTTTTGCTGTGGAGgtgagttggttatcaccaaagagtaggtaaccatttgtgctttcattggc Alignment from GeneWise AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG ggcttatatcggcaaaatatacagccccccgtcttgttgctcctgtttagAATGGATTTTGCCCTTAGCAAACTTAATAAGGCAGGTAATCAAACTGGTCTATATGTGCTACGATGTAGCCCTAAAGACTTCAACAAATACTTTCTGACTTTTGCTGTGGAGgtgagttggttatcaccaaagagtaggtaaccatttgtgctttcattggc #### Jak2_ID6241_17 --> 2 - 0 Original Alignment atTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA gtattggctcttgcatggtggaccacctgagcatgcatattctcctgtagatTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACGCAATTTGAAGAGAGGCACCTGAAGTTTCTACAACAGCTTGGCAAAgtgagcggttgacggtttcactgaagtgacaactatactctggaccatat Alignment from CESAR atTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA gtattggctcttgcatggtggaccacctgagcatgcatattctcctgtagatTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACGCAATTTGAAGAGAGGCACCTGAAGTTTCTACAACAGCTTGGCAAAgtgagcggttgacggtttcactgaagtgacaactatactctggaccatat Alignment from Spaln_aa2Genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA gtattggctcttgcatggtggaccacctgagcatgcatattctcctgtagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACGCAATTTGAAGAGAGGCACCTGAAGTTTCTACAACAGCTTGGCAAAgtgagcggttgacggtttcactgaagtgacaactatactctggaccatat Alignment from Spaln_nt2Genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA gtattggctcttgcatggtggaccacctgagcatgcatattctcctgtagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACGCAATTTGAAGAGAGGCACCTGAAGTTTCTACAACAGCTTGGCAAAgtgagcggttgacggtttcactgaagtgacaactatactctggaccatat Alignment from Pairagon ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA gtattggctcttgcatggtggaccacctgagcatgcatattctcctgtagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACGCAATTTGAAGAGAGGCACCTGAAGTTTCTACAACAGCTTGGCAAAgtgagcggttgacggtttcactgaagtgacaactatactctggaccatat Alignment from Exonerate_protein2genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA gtattggctcttgcatggtggaccacctgagcatgcatattctcctgtagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACGCAATTTGAAGAGAGGCACCTGAAGTTTCTACAACAGCTTGGCAAAgtgagcggttgacggtttcactgaagtgacaactatactctggaccatat Alignment from Exonerate_coding2genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA gtattggctcttgcatggtggaccacctgagcatgcatattctcctgtagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACGCAATTTGAAGAGAGGCACCTGAAGTTTCTACAACAGCTTGGCAAAgtgagcggttgacggtttcactgaagtgacaactatactctggaccatat Alignment from GeneWise ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA gtattggctcttgcatggtggaccacctgagcatgcatattctcctgtagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACGCAATTTGAAGAGAGGCACCTGAAGTTTCTACAACAGCTTGGCAAAgtgagcggttgacggtttcactgaagtgacaactatactctggaccatat #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG GGCATGGAATA tgatgaactaaactcatagtgccatatacattctttctaaaaatgattaggtAGACACAATCTAGGACTAATTATGGAATATCTCCCTTATGGAAGCCTACGTGACTTTCTGCAAAAGCATAAAGAACGAATAGATCACAAGAAACTTCTCCAGTACACATCACAGATATGCAAAgtaaggagctattgatacatatgaaactacttttcccagGGGATGGAGTT Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG GGCATGGAATA tgatgaactaaactcatagtgccatatacattctttctaaaaatgattaggtAGACACAATCTAGGACTAATTATGGAATATCTCCCTTATGGAAGCCTACGTGACTTTCTGCAAAAGCATAAAGAACGAATAGATCACAAGAAACTTCTCCAGTACACATCACAGATATGCAAAgtaaggagctattgatactgtgtctcccctgttttgcagGGGATGGAGTT Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG GGCATGGAATA tgatgaactaaactcatagtgccatatacattctttctaaaaatgattagGTAGACACAATCTAGGACTAATTATGGAATATCTCCCTTATGGAAGCCTACGTGACTTTCTGCAAAAGCATAAAGAACGAATAGATCACAAGAAACTTCTCCAGTACACATCACAGATATGCAAAgtaaggagctattgatacatatgaaactacttttcccagGGGATGGAGTT Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG GGCATGGAATA tgatgaactaaactcatagtgccatatacattctttctaaaaatgattagGTAGACACAATCTAGGACTAATTATGGAATATCTCCCTTATGGAAGCCTACGTGACTTTCTGCAAAAGCATAAAGAACGAATAGATCACAAGAAACTTCTCCAGTACACATCACAGATATGCAAAgtaaggagctattgatacatatgaaactacttttcccagGGGATGGAGTT Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG GGCATGGAATA tgatgaactaaactcatagtgccatatacattctttctaaaaatgattagGTAGACACAATCTAGGACTAATTATGGAATATCTCCCTTATGGAAGCCTACGTGACTTTCTGCAAAAGCATAAAGAACGAATAGATCACAAGAAACTTCTCCAGTACACATCACAGATATGCAAAgtaaggagctattgatacatatgaaactacttttcccagGGGATGGAGTT Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG GGCATGGAATA tgatgaactaaactcatagtgccatatacattctttctaaaaatgattagGTAGACACAATCTAGGACTAATTATGGAATATCTCCCTTATGGAAGCCTACGTGACTTTCTGCAAAAGCATAAAGAACGAATAGATCACAAGAAACTTCTCCAGTACACATCACAGATATGCAAAgtaaggagctattgatacatatgaaactacttttcccagGGGATGGAGTT Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG GGCATGGAATA tgatgaactaaactcatagtgccatatacattctttctaaaaatgattagGTAGACACAATCTAGGACTAATTATGGAATATCTCCCTTATGGAAGCCTACGTGACTTTCTGCAAAAGCATAAAGAACGAATAGATCACAAGAAACTTCTCCAGTACACATCACAGATATGCAAAgtaaggagctattgatacatatgaaactacttttcccagGGGATGGAGTT Alignment from GeneWise GCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG GGCATGGAATA tgatgaactaaactcatagtgccatatacattctttctaaaaatgattaggtagACACAATCTAGGACTAATTATGGAATATCTCCCTTATGGAAGCCTACGTGACTTTCTGCAAAAGCATAAAGAACGAATAGATCACAAGAAACTTCTCCAGTACACATCACAGATATGCAAAgtaaggagctattgatacatatgaaactacttttcccagGGGATGGAGTT #### Kank1_ID5455_2 --> 2 - 1 Original Alignment aaAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAG------ATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTAT---AACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGG------AGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAg cacaccccttggttcttcacacaacacctactgtgttttcccctatgtagggAAAGCAGATGGAGTTCTTAATGGAGAGCATAATAAGGAAAAAGAAGACCCATACTTTGTGGAGAGCCCTTATGGTTTTGACCTAGATGTAGATTTTGTCAAATACAATGATGATATACAGAAGGGAAATATTATTAAAACACTGAATATCCAGAAAAGGCAAAAACCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCCGGTCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCC------AGAGACAGCAAGCAGTGTCCAACATTCCTCCTAGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACATTTACAGTATCAGAAAACCAACATCTGCTGCCATCTCCCTCAGTGCAACTC---AGGCACAACCTTGATGCCACAAAGATCACAATGGAGACCGATAGAAGATTAGATGAGGGTCAAGTTACCATGCACATGCAAATGGCAACAGGTGATGTTAGGCGGCCCAGGTTGTCAAGTTTTGGAGGTACAGGATCCACTAGCTCAATTCTTACCTTCGTAGGATCTGCCAACCATAGCTCTGCTATACATCAGCTTCAGATCGGCTGTCAAGGC------AATTATTACAACAGCCATGATCCAGCAGCTCCAACAACATCTTCCATGGGTAGCTCTGCACGACATACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGCGAGCAGATGGCTAATGCATTACAACACCTAAAGGACCTTGAGGAACAGGTTAGAACCATCCCAGTAATCCAGGTCAAGATCTCTGTGTTACAAGAAGAGATGAGGCAGTTGGTGTCACAGTTGAAAAGTCAGCGTAACTCATCTCAGAATGAAGCATGTAGTGTGAAGGAGCGCTCCTATAGTGCAGGCAATGCCTCTCAATTGGAACGACTTGCCCAGGCACGCAGAGGCAGTGGAGAATTATATATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGGTCCAGGAATTTCAACTGCTA---------ATGCAGACACTTGAACAAAGATTGCAGGATAGTAGTTGTGAGGTGGCATCAGAACCTGGGGGAAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCTGTAGCTGTGGGAACTGAG---AACATGAATGATGTTGTCGTGTATCATAGGGACTTATGGGTTTGTAAAGATACA---GTTGGTACAGTCACTGAAACAACAAATGTGGGGATTAGCGTGTCAGAAGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACAATAGATGCATTGAAAGAGAAGGTGTACTGTCTAGAGGTGCTACTTAAAGAG---ACTCATGATTGTGAGATGACTAAGCTCAAACAGGAATTACAGGCTGTTGGCGCCAGGAAAAAAGTTGATAAGGCTACAAAGGTTCAACCACTGGTGTTCAGTATATTGGTGGAGGCATTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGAACATCTGTTAAGATGAGCAGTCTAGGCATCTCCTGCCATCCTGAATGCAAGAACCAAGTTGTGGGATCTGAACTACCCATGAATTGGTGG------------AGGGTGGGAATGCATGCCCAGTGTGTAGGGATGTCTGCAGAAACCTGTGACCGAAGTATTGGTGTGGAAGTGAGTGTTTGTGAAACAGGTGGTAACGCAGAAGCATCTGGGGGTGATCGTGATCTGCCATTACTTAAAACTAACTTGAATCTCAAGGTAGTGCAGTCTATTGGGTGTGAAGATTGTTCTGTAGCTGTGATAGTTTGTTTTCCCAGGGAGCGTACCTCCTATAGCATGAACACAGGAGCTGTAGGCCAAGAGGAGGCAGCAGTCATGGCAGTTCCCCATACTACAGATCAATATACCAGTACCAATCTAGAGCAGATAGACCTATGCACTAATACGGAAGCCACAACCCTAGTTGAGTCCTGTTCCAATACACTCTTAAGTACCGTAGACAGAGAAACAAGTACCCACACTGTTGAGATGCGGTCATTGGCTGTTGGAGAAGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTTCAGTGCTGTCAGGCAATTGTGAATTTGCAAGACCATGTGCTGTCAAAAACAAGGAGTCTGGTGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGCCTCAAGATGAGAACCATTGTA---GGTCCTCCA---CTGACTGTGGGGTTAATAGGTAGCCGGAGGAGCGTCGGTGTTGGCAATGAAACTATAAGAGAGTTCCCAGAGGAATCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGCTGGATCACTATATTGAGTGTGTACAG---ACACTTGCAGACCAACAGCCACTTCTGGTTGAGAACTATGGCGAGCTTACAGAGGCATTTGGGGAGCCTCACTCACAGATTGGTTCTCTCAATTCACAACTCATAAGCACCATATCATCCATTAATTCAGTCATGAAATCTGCGAGCACAAAAGAACTCAGGAAATCCGATTTTCAAGAACCTGGTTTGGGCAAGACTGAGggtgaggagcactcttagcatactcccctggattccagtatgttaatgtta Alignment from CESAR aaAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACC------ATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGC------GACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAg cacaccccttggttcttcacacaacacctactgtgttttcccctatgtagggAAAGCAGATGGAGTTCTTAATGGAGAGCATAATAAGGAAAAAGAAGACCCATACTTTGTGGAGAGCCCTTATGGTTTTGACCTAGATGTAGATTTTGTCAAATACAATGATGATATACAGAAGGGAAATATTATTAAAACACTGAATATCCAGAAAAGGCAAAAACCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCCGGTCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAGA------GACAGCAAGCAGTGTCCAACATTCCTCCTAGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACATTTACAGTATCAGAAAACCAACATCTGCTGCCATCTCCCTCAGTGCAACTC---AGGCACAACCTTGATGCCACAAAGATCACAATGGAGACCGATAGAAGATTAGATGAGGGTCAAGTTACCATGCACATGCAAATGGCAACAGGTGATGTTAGGCGGCCCAGGTTGTCAAGTTTTGGAGGTACAGGATCCACTAGCTCAATTCTTACCTTCGTAGGATCTGCCAACCATAGCTCTGCTATACATCAGCTTCAGATCGGCTGTCAAGGCAAT---TATTACAACAGCCATGATCCAGCAGCTCCAACAACATCTTCCATGGGTAGCTCTGCACGACATACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGCGAGCAGATGGCTAATGCATTACAACACCTAAAGGACCTTGAGGAACAGGTTAGAACCATCCCAGTAATCCAGGTCAAGATCTCTGTGTTACAAGAAGAGATGAGGCAGTTGGTGTCACAGTTGAAAAGTCAGCGTAACTCATCTCAGAATGAAGCATGTAGTGTGAAGGAGCGCTCCTATAGTGCAGGCAATGCCTCTCAATTGGAACGACTTGCCCAGGCACGCAGAGGCAGTGGAGAATTATATATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGGTCCAGGAATTTCAACTGCTA---------ATGCAGACACTTGAACAAAGATTGCAGGATAGTAGTTGTGAGGTGGCATCAGAACCTGGGGGAAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCTGTAGCTGTGGGAACT---GAGAACATGAATGATGTTGTCGTGTATCATAGGGACTTATGGGTTTGTAAAGATACA---GTTGGTACAGTCACTGAAACAACAAATGTGGGGATTAGCGTGTCAGAAGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACAATAGATGCATTGAAAGAGAAGGTGTACTGTCTAGAGGTGCTACTTAAAGAG---ACTCATGATTGTGAGATGACTAAGCTCAAACAGGAATTACAGGCTGTTGGCGCCAGGAAAAAAGTTGATAAGGCTACAAAGGTTCAACCACTGGTGTTCAGTATATTGGTGGAGGCATTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGAACATCTGTTAAGATGAGCAGTCTAGGCATCTCCTGCCATCCTGAATGCAAGAACCAAGTTGTGGGATCTGAACTACCCATGAATTGGTGG------------AGGGTGGGAATGCATGCCCAGTGTGTAGGGATGTCTGCAGAAACCTGTGACCGAAGTATTGGTGTGGAAGTGAGTGTTTGTGAAACAGGTGGTAACGCAGAAGCATCTGGGGGTGATCGTGATCTGCCATTACTTAAAACTAACTTGAATCTCAAGGTAGTGCAGTCTATTGGGTGTGAAGATTGTTCTGTAGCTGTGATAGTTTGTTTTCCCAGGGAGCGTACCTCCTATAGCATGAACACAGGAGCTGTAGGCCAAGAGGAGGCAGCAGTCATGGCAGTTCCCCATACTACAGATCAATATACCAGTACCAATCTAGAGCAGATAGACCTATGCACTAATACGGAAGCCACAACCCTAGTTGAGTCCTGTTCCAATACACTCTTAAGTACCGTAGACAGAGAAACAAGTACCCACACTGTTGAGATGCGGTCATTGGCTGTTGGAGAAGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTTCAGTGCTGTCAGGCAATTGTGAATTTGCAAGACCATGTGCTGTCAAAAACAAGGAGTCTGGTGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGCCTCAAGATGAGAACCATTGTA---GGTCCTCCA---CTGACTGTGGGGTTAATAGGTAGCCGGAGGAGCGTCGGTGTTGGCAATGAAACTATAAGAGAGTTCCCAGAGGAATCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGCTGGATCACTATATTGAGTGTGTACAGACA---CTTGCAGACCAACAGCCACTTCTGGTTGAGAACTATGGCGAGCTTACAGAGGCATTTGGGGAGCCTCACTCACAGATTGGTTCTCTCAATTCACAACTCATAAGCACCATATCATCCATTAATTCAGTCATGAAATCTGCGAGCACAAAAGAACTCAGGAAATCCGATTTTCAAGAACCTGGTTTGGGCAAGACTGAGggtgaggagcactcttagcatactcccctggattccagtatgttaatgtta Alignment from Spaln_aa2Genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACC------ATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGC------GACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG cacaccccttggttcttcacacaacacctactgtgttttcccctatgtagGGAAAGCAGATGGAGTTCTTAATGGAGAGCATAATAAGGAAAAAGAAGACCCATACTTTGTGGAGAGCCCTTATGGTTTTGACCTAGATGTAGATTTTGTCAAATACAATGATGATATACAGAAGGGAAATATTATTAAAACACTGAATATCCAGAAAAGGCAAAAACCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCCGGTCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAGA------GACAGCAAGCAGTGTCCAACATTCCTCCTAGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACATTTACAGTATCAGAAAACCAACATCTGCTGCCATCTCCCTCAGTGCAACTC---AGGCACAACCTTGATGCCACAAAGATCACAATGGAGACCGATAGAAGATTAGATGAGGGTCAAGTTACCATGCACATGCAAATGGCAACAGGTGATGTTAGGCGGCCCAGGTTGTCAAGTTTTGGAGGTACAGGATCCACTAGCTCAATTCTTACCTTCGTAGGATCTGCCAACCATAGCTCTGCTATACATCAGCTTCAGATCGGCTGTCAAGGCAAT---TATTACAACAGCCATGATCCAGCAGCTCCAACAACATCTTCCATGGGTAGCTCTGCACGACATACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGCGAGCAGATGGCTAATGCATTACAACACCTAAAGGACCTTGAGGAACAGGTTAGAACCATCCCAGTAATCCAGGTCAAGATCTCTGTGTTACAAGAAGAGATGAGGCAGTTGGTGTCACAGTTGAAAAGTCAGCGTAACTCATCTCAGAATGAAGCATGTAGTGTGAAGGAGCGCTCCTATAGTGCAGGCAATGCCTCTCAATTGGAACGACTTGCCCAGGCACGCAGAGGCAGTGGAGAATTATATATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGGTCCAGGAATTTCAACTGCTA---------ATGCAGACACTTGAACAAAGATTGCAGGATAGTAGTTGTGAGGTGGCATCAGAACCTGGGGGAAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCTGTAGCTGTGGGAACT---GAGAACATGAATGATGTTGTCGTGTATCATAGGGACTTATGGGTTTGTAAAGATACA---GTTGGTACAGTCACTGAAACAACAAATGTGGGGATTAGCGTGTCAGAAGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACAATAGATGCATTGAAAGAGAAGGTGTACTGTCTAGAGGTGCTACTTAAAGAG---ACTCATGATTGTGAGATGACTAAGCTCAAACAGGAATTACAGGCTGTTGGCGCCAGGAAAAAAGTTGATAAGGCTACAAAGGTTCAACCACTGGTGTTCAGTATATTGGTGGAGGCATTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGAACATCTGTTAAGATGAGCAGTCTAGGCATCTCCTGCCATCCTGAATGCAAGAACCAAGTTGTGGGATCTGAACTACCCATGAATTGGTGG------------AGGGTGGGAATGCATGCCCAGTGTGTAGGGATGTCTGCAGAAACCTGTGACCGAAGTATTGGTGTGGAAGTGAGTGTTTGTGAAACAGGTGGTAACGCAGAAGCATCTGGGGGTGATCGTGATCTGCCATTACTTAAAACTAACTTGAATCTCAAGGTAGTGCAGTCTATTGGGTGTGAAGATTGTTCTGTAGCTGTGATAGTTTGTTTTCCCAGGGAGCGTACCTCCTATAGCATGAACACAGGAGCTGTAGGCCAAGAGGAGGCAGCAGTCATGGCAGTTCCCCATACTACAGATCAATATACCAGTACCAATCTAGAGCAGATAGACCTATGCACTAATACGGAAGCCACAACCCTAGTTGAGTCCTGTTCCAATACACTCTTAAGTACCGTAGACAGAGAAACAAGTACCCACACTGTTGAGATGCGGTCATTGGCTGTTGGAGAAGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTTCAGTGCTGTCAGGCAATTGTGAATTTGCAAGACCATGTGCTGTCAAAAACAAGGAGTCTGGTGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGCCTCAAGATGAGAACCATTGTA---GGTCCTCCA---CTGACTGTGGGGTTAATAGGTAGCCGGAGGAGCGTCGGTGTTGGCAATGAAACTATAAGAGAGTTCCCAGAGGAATCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGCTGGATCACTATATTGAGTGTGTACAGACA---CTTGCAGACCAACAGCCACTTCTGGTTGAGAACTATGGCGAGCTTACAGAGGCATTTGGGGAGCCTCACTCACAGATTGGTTCTCTCAATTCACAACTCATAAGCACCATATCATCCATTAATTCAGTCATGAAATCTGCGAGCACAAAAGAACTCAGGAAATCCGATTTTCAAGAACCTGGTTTGGGCAAGACTGAGGgtgaggagcactcttagcatactcccctggattccagtatgttaatgtta Alignment from Spaln_nt2Genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATG------GCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATT-CAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACC------TGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG cacaccccttggttcttcacacaacacctactgtgttttcccctatgtagGGAAAGCAGATGGAGTTCTTAATGGAGAGCATAATAAGGAAAAAGAAGACCCATACTTTGTGGAGAGCCCTTATGGTTTTGACCTAGATGTAGATTTTGTCAAATACAATGATGATATACAGAAGGGAAATATTATTAAAACACTGAATATCCAGAAAAGGCAAAAACCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCCGGTCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCA-----GA-GACAGCAAGCAGTGTCCAACATTCCTCCTAGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACATTTACAGTATCAGAAAACCAACATCTGCTGCCATCTCCCTCAGTGCAACT---CAGGCACAACCTTGATGCCACAAAGATCACAATGGAGACCGATAGAAGATTAGATGAGGGTCAAGTTACCATGCACATGCAAATGGCAACAGGTGATGTTAGGCGGCCCAGGTTGTCAAGTTTTGGAGGTACAGGATCCACTAGCTCAATTCTTACCTTCGTAGGATCTGCCAACCATAGCTCTGCTATACATCAGCTTCAGATCGGCTGTCAAGGCAAT---TATTACAACAGCCATGATCCAGCAGCTCCAACAACATCTTCCATGGGTAGCTCTGCACGACATACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGCGAGCAGATGGCTAATGCATTACAACACCTAAAGGACCTTGAGGAACAGGTTAGAACCATCCCAGTAATCCAGGTCAAGATCTCTGTGTTACAAGAAGAGATGAGGCAGTTGGTGTCACAGTTGAAAAGTCAGCGTAACTCATCTCAGAATGAAGCATGTAGTGTGAAGGAGCGCTCCTATAGTGCAGGCAATGCCTCTCAATTGGAACGACTTGCCCAGGCACGCAGAGGCAGTGGAGAATTATATATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGGTCCAGGAATTTCAACTGCT---------AATGCAGACACTTGAAC-AAAGATTGCAGGATAGTAGTTGTGAGGTGGCATCAGAACCTGGGGGAAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCTGTAGCTGTGGGAA---CTGAGAACATGAATGATGTTGTCGTGTATCATAGGGACTTATGGGTTTGTAAAGATA---CAGTTGGTACAGTCACTGAAACAACAAATGTGGGGATTAGCGTGTCAGAAGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACAATAGATGCATTGAAAGAGAAGGTGTACTGTCTAGAGGTGCTACTTAAAGA---GACTCATGATTGTGAGATGACTAAGCTCAAACAGGAATTACAGGCTGTTGGCGCCAGGAAAAAAGTTGATAAGGCTACAAAGGTTCAACCACTGGTGTTCAGTATATTGGTGGAGGCATTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGAACATCTGTTAAGATGAGCAGTCTAGGCATCTCCTGCCATCCTGAATGCAAGAACCAAGTTGTGGGATCTGAACTACCCATGAATTGGTGG------------AGGGTGGGAATGCATGCCCAGTGTGTAGGGATGTCTGCAGAAACCTGTGACCGAAGTATTGGTGTGGAAGTGAGTGTTTGTGAAACAGGTGGTAACGCAGAAGCATCTGGGGGTGATCGTGATCTGCCATTACTTAAAACTAACTTGAATCTCAAGGTAGTGCAGTCTATTGGGTGTGAAGATTGTTCTGTAGCTGTGATAGTTTGTTTTCCCAGGGAGCGTACCTCCTATAGCATGAACACAGGAGCTGTAGGCCAAGAGGAGGCAGCAGTCATGGCAGTTCCCCATACTACAGATCAATATACCAGTACCAATCTAGAGCAGATAGACCTATGCACTAATACGGAAGCCACAACCCTAGTTGAGTCCTGTTCCAATACACTCTTAAGTACCGTAGACAGAGAAACAAGTACCCACACTGTTGAGATGCGGTCATTGGCTGTTGGAGAAGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTTCAGTGCTGTCAGGCAATTGTGAATTTGCAAGACCATGTGCTGTCAAAAACAAGGAGTCTGGTGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGCCTCAAGATGAGAACCATTG---TAGGTCCTCCAC---TGACTGTGGGGTTAATAGGTAGCCGGAGGAGCGTCGGTGTTGGCAATGAAACTATAAGAGAGTTCCCAGAGGAATCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGCTGGATCACTATATTGAGTGTGTACAGA---CACTTGCAGACCAACAGCCACTTCTGGTTGAGAACTATGGCGAGCTTACAGAGGCATTTGGGGAGCCTCACTCACAGATTGGTTCTCTCAATTCACAACTCATAAGCACCATATCATCCATTAATTCAGTCATGAAATCTGCGAGCACAAAAGAACTCAGGAAATCCGATTTTCAAGAACCTGGTTTGGGCAAGACTGAGGgtgaggagcactcttagcatactcccctggattccagtatgttaatgtta Alignment from Pairagon AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCAC------CATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATT----------------------------------CAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGA------GCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG cacaccccttggttcttcacacaacacctactgtgttttcccctatgtagGGAAAGCAGATGGAGTTCTTAATGGAGAGCATAATAAGGAAAAAGAAGACCCATACTTTGTGGAGAGCCCTTATGGTTTTGACCTAGATGTAGATTTTGTCAAATACAATGATGATATACAGAAGGGAAATATTATTAAAACACTGAATATCCAGAAAAGGCAAAAACCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCCGGTCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAGA------GACAGCAAGCAGTGTCCAACATTCCTCCTAGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACATTTACAGTATCAGAAAACCAACATCTGCTGCCATCTCCCTCAGTGCAACT---CAGGCACAACCTTGATGCCACAAAGATCACAATGGAGACCGATAGAAGATTAGATGAGGGTCAAGTTACCATGCACATGCAAATGGCAACAGGTGATGTTAGGCGGCCCAGGTTGTCAAGTTTTGGAGGTACAGGATCCACTAGCTCAATTCTTACCTTCGTAGGATCTGCCAACCATAGCTCTGCTATACATCAGCTTCAGATCGGCTGTCAAGGCAAT---TATTACAACAGCCATGATCCAGCAGCTCCAACAACATCTTCCATGGGTAGCTCTGCACGACATACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGCGAGCAGATGGCTAATGCATTACAACACCTAAAGGACCTTGAGGAACAGGTTAGAACCATCCCAGTAATCCAGGTCAAGATCTCTGTGTTACAAGAAGAGATGAGGCAGTTGGTGTCACAGTTGAAAAGTCAGCGTAACTCATCTCAGAATGAAGCATGTAGTGTGAAGGAGCGCTCCTATAGTGCAGGCAATGCCTCTCAATTGGAACGACTTGCCCAGGCACGCAGAGGCAGTGGAGAATTATATATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGGTCCAGGA-------------------------------------------ATTTCAACTGCTAATGCAGACACTTGAACAAAGATTGCAGGATAGTAGTTGTGAGGTGGCATCAGAACCTGGGGGAAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCTGTAGCTGTGGGAA---CTGAGAACATGAATGATGTTGTCGTGTATCATAGGGACTTATGGGTTTGTAAAGATACAGTT---GGTACAGTCACTGAAACAACAAATGTGGGGATTAGCGTGTCAGAAGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACAATAGATGCATTGAAAGAGAAGGTGTACTGTCTAGAGGTGCTACTTAAAGA---GACTCATGATTGTGAGATGACTAAGCTCAAACAGGAATTACAGGCTGTTGGCGCCAGGAAAAAAGTTGATAAGGCTACAAAGGTTCAACCACTGGTGTTCAGTATATTGGTGGAGGCATTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGAACATCTGTTAAGATGAGCAGTCTAGGCATCTCCTGCCATCCTGAATGCAAGAACCAAGTTGTGGGATCTGAACTACCCATGAATTGGTG------------GAGGGTGGGAATGCATGCCCAGTGTGTAGGGATGTCTGCAGAAACCTGTGACCGAAGTATTGGTGTGGAAGTGAGTGTTTGTGAAACAGGTGGTAACGCAGAAGCATCTGGGGGTGATCGTGATCTGCCATTACTTAAAACTAACTTGAATCTCAAGGTAGTGCAGTCTATTGGGTGTGAAGATTGTTCTGTAGCTGTGATAGTTTGTTTTCCCAGGGAGCGTACCTCCTATAGCATGAACACAGGAGCTGTAGGCCAAGAGGAGGCAGCAGTCATGGCAGTTCCCCATACTACAGATCAATATACCAGTACCAATCTAGAGCAGATAGACCTATGCACTAATACGGAAGCCACAACCCTAGTTGAGTCCTGTTCCAATACACTCTTAAGTACCGTAGACAGAGAAACAAGTACCCACACTGTTGAGATGCGGTCATTGGCTGTTGGAGAAGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTTCAGTGCTGTCAGGCAATTGTGAATTTGCAAGACCATGTGCTGTCAAAAACAAGGAGTCTGGTGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGCCTCAAGATGAGAACCATTGTA---GGTCCTCCAC---TGACTGTGGGGTTAATAGGTAGCCGGAGGAGCGTCGGTGTTGGCAATGAAACTATAAGAGAGTTCCCAGAGGAATCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGCTGGATCACTATATTGAGTGTGTACAGA---CACTTGCAGACCAACAGCCACTTCTGGTTGAGAACTATGGCGAGCTTACAGAGGCATTTGGGGAGCCTCACTCACAGATTGGTTCTCTCAATTCACAACTCATAAGCACCATATCATCCATTAATTCAGTCATGAAATCTGCGAGCACAAAAGAACTCAGGAAATCCGATTTTCAAGAACCTGGTTTGGGCAAGACTGAGGgtgaggagcactcttagcatactcccctggattccagtatgttaatgtta Alignment from Exonerate_protein2genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACC------ATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGC------GACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG cacaccccttggttcttcacacaacacctactgtgttttcccctatgtagGGAAAGCAGATGGAGTTCTTAATGGAGAGCATAATAAGGAAAAAGAAGACCCATACTTTGTGGAGAGCCCTTATGGTTTTGACCTAGATGTAGATTTTGTCAAATACAATGATGATATACAGAAGGGAAATATTATTAAAACACTGAATATCCAGAAAAGGCAAAAACCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCCGGTCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAGA------GACAGCAAGCAGTGTCCAACATTCCTCCTAGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACATTTACAGTATCAGAAAACCAACATCTGCTGCCATCTCCCTCAGTGCAACTC---AGGCACAACCTTGATGCCACAAAGATCACAATGGAGACCGATAGAAGATTAGATGAGGGTCAAGTTACCATGCACATGCAAATGGCAACAGGTGATGTTAGGCGGCCCAGGTTGTCAAGTTTTGGAGGTACAGGATCCACTAGCTCAATTCTTACCTTCGTAGGATCTGCCAACCATAGCTCTGCTATACATCAGCTTCAGATCGGCTGTCAAGGCAAT---TATTACAACAGCCATGATCCAGCAGCTCCAACAACATCTTCCATGGGTAGCTCTGCACGACATACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGCGAGCAGATGGCTAATGCATTACAACACCTAAAGGACCTTGAGGAACAGGTTAGAACCATCCCAGTAATCCAGGTCAAGATCTCTGTGTTACAAGAAGAGATGAGGCAGTTGGTGTCACAGTTGAAAAGTCAGCGTAACTCATCTCAGAATGAAGCATGTAGTGTGAAGGAGCGCTCCTATAGTGCAGGCAATGCCTCTCAATTGGAACGACTTGCCCAGGCACGCAGAGGCAGTGGAGAATTATATATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGGTCCAGGAATTTCAACTGCTA---------ATGCAGACACTTGAACAAAGATTGCAGGATAGTAGTTGTGAGGTGGCATCAGAACCTGGGGGAAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCTGTAGCTGTGGGAACT---GAGAACATGAATGATGTTGTCGTGTATCATAGGGACTTATGGGTTTGTAAAGATACA---GTTGGTACAGTCACTGAAACAACAAATGTGGGGATTAGCGTGTCAGAAGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACAATAGATGCATTGAAAGAGAAGGTGTACTGTCTAGAGGTGCTACTTAAAGAG---ACTCATGATTGTGAGATGACTAAGCTCAAACAGGAATTACAGGCTGTTGGCGCCAGGAAAAAAGTTGATAAGGCTACAAAGGTTCAACCACTGGTGTTCAGTATATTGGTGGAGGCATTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGAACATCTGTTAAGATGAGCAGTCTAGGCATCTCCTGCCATCCTGAATGCAAGAACCAAGTTGTGGGATCTGAACTACCCATGAATTGGTGG------------AGGGTGGGAATGCATGCCCAGTGTGTAGGGATGTCTGCAGAAACCTGTGACCGAAGTATTGGTGTGGAAGTGAGTGTTTGTGAAACAGGTGGTAACGCAGAAGCATCTGGGGGTGATCGTGATCTGCCATTACTTAAAACTAACTTGAATCTCAAGGTAGTGCAGTCTATTGGGTGTGAAGATTGTTCTGTAGCTGTGATAGTTTGTTTTCCCAGGGAGCGTACCTCCTATAGCATGAACACAGGAGCTGTAGGCCAAGAGGAGGCAGCAGTCATGGCAGTTCCCCATACTACAGATCAATATACCAGTACCAATCTAGAGCAGATAGACCTATGCACTAATACGGAAGCCACAACCCTAGTTGAGTCCTGTTCCAATACACTCTTAAGTACCGTAGACAGAGAAACAAGTACCCACACTGTTGAGATGCGGTCATTGGCTGTTGGAGAAGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTTCAGTGCTGTCAGGCAATTGTGAATTTGCAAGACCATGTGCTGTCAAAAACAAGGAGTCTGGTGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGCCTCAAGATGAGAACCATTGTA---GGTCCTCCA---CTGACTGTGGGGTTAATAGGTAGCCGGAGGAGCGTCGGTGTTGGCAATGAAACTATAAGAGAGTTCCCAGAGGAATCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGCTGGATCACTATATTGAGTGTGTACAG---ACACTTGCAGACCAACAGCCACTTCTGGTTGAGAACTATGGCGAGCTTACAGAGGCATTTGGGGAGCCTCACTCACAGATTGGTTCTCTCAATTCACAACTCATAAGCACCATATCATCCATTAATTCAGTCATGAAATCTGCGAGCACAAAAGAACTCAGGAAATCCGATTTTCAAGAACCTGGTTTGGGCAAGACTGAGGgtgaggagcactcttagcatactcccctggattccagtatgttaatgtta Alignment from Exonerate_coding2genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACC------ATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGC------GACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG cacaccccttggttcttcacacaacacctactgtgttttcccctatgtagGGAAAGCAGATGGAGTTCTTAATGGAGAGCATAATAAGGAAAAAGAAGACCCATACTTTGTGGAGAGCCCTTATGGTTTTGACCTAGATGTAGATTTTGTCAAATACAATGATGATATACAGAAGGGAAATATTATTAAAACACTGAATATCCAGAAAAGGCAAAAACCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCCGGTCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAGA------GACAGCAAGCAGTGTCCAACATTCCTCCTAGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACATTTACAGTATCAGAAAACCAACATCTGCTGCCATCTCCCTCAGTGCAACTC---AGGCACAACCTTGATGCCACAAAGATCACAATGGAGACCGATAGAAGATTAGATGAGGGTCAAGTTACCATGCACATGCAAATGGCAACAGGTGATGTTAGGCGGCCCAGGTTGTCAAGTTTTGGAGGTACAGGATCCACTAGCTCAATTCTTACCTTCGTAGGATCTGCCAACCATAGCTCTGCTATACATCAGCTTCAGATCGGCTGTCAAGGCAAT---TATTACAACAGCCATGATCCAGCAGCTCCAACAACATCTTCCATGGGTAGCTCTGCACGACATACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGCGAGCAGATGGCTAATGCATTACAACACCTAAAGGACCTTGAGGAACAGGTTAGAACCATCCCAGTAATCCAGGTCAAGATCTCTGTGTTACAAGAAGAGATGAGGCAGTTGGTGTCACAGTTGAAAAGTCAGCGTAACTCATCTCAGAATGAAGCATGTAGTGTGAAGGAGCGCTCCTATAGTGCAGGCAATGCCTCTCAATTGGAACGACTTGCCCAGGCACGCAGAGGCAGTGGAGAATTATATATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGGTCCAGGAATTTCAACTGCTA---------ATGCAGACACTTGAACAAAGATTGCAGGATAGTAGTTGTGAGGTGGCATCAGAACCTGGGGGAAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCTGTAGCTGTGGGAACT---GAGAACATGAATGATGTTGTCGTGTATCATAGGGACTTATGGGTTTGTAAAGATACA---GTTGGTACAGTCACTGAAACAACAAATGTGGGGATTAGCGTGTCAGAAGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACAATAGATGCATTGAAAGAGAAGGTGTACTGTCTAGAGGTGCTACTTAAAGAG---ACTCATGATTGTGAGATGACTAAGCTCAAACAGGAATTACAGGCTGTTGGCGCCAGGAAAAAAGTTGATAAGGCTACAAAGGTTCAACCACTGGTGTTCAGTATATTGGTGGAGGCATTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGAACATCTGTTAAGATGAGCAGTCTAGGCATCTCCTGCCATCCTGAATGCAAGAACCAAGTTGTGGGATCTGAACTACCCATGAATTGGTGG------------AGGGTGGGAATGCATGCCCAGTGTGTAGGGATGTCTGCAGAAACCTGTGACCGAAGTATTGGTGTGGAAGTGAGTGTTTGTGAAACAGGTGGTAACGCAGAAGCATCTGGGGGTGATCGTGATCTGCCATTACTTAAAACTAACTTGAATCTCAAGGTAGTGCAGTCTATTGGGTGTGAAGATTGTTCTGTAGCTGTGATAGTTTGTTTTCCCAGGGAGCGTACCTCCTATAGCATGAACACAGGAGCTGTAGGCCAAGAGGAGGCAGCAGTCATGGCAGTTCCCCATACTACAGATCAATATACCAGTACCAATCTAGAGCAGATAGACCTATGCACTAATACGGAAGCCACAACCCTAGTTGAGTCCTGTTCCAATACACTCTTAAGTACCGTAGACAGAGAAACAAGTACCCACACTGTTGAGATGCGGTCATTGGCTGTTGGAGAAGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTTCAGTGCTGTCAGGCAATTGTGAATTTGCAAGACCATGTGCTGTCAAAAACAAGGAGTCTGGTGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGCCTCAAGATGAGAACCATTGTA---GGTCCTCCA---CTGACTGTGGGGTTAATAGGTAGCCGGAGGAGCGTCGGTGTTGGCAATGAAACTATAAGAGAGTTCCCAGAGGAATCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGCTGGATCACTATATTGAGTGTGTACAG---ACACTTGCAGACCAACAGCCACTTCTGGTTGAGAACTATGGCGAGCTTACAGAGGCATTTGGGGAGCCTCACTCACAGATTGGTTCTCTCAATTCACAACTCATAAGCACCATATCATCCATTAATTCAGTCATGAAATCTGCGAGCACAAAAGAACTCAGGAAATCCGATTTTCAAGAACCTGGTTTGGGCAAGACTGAGGgtgaggagcactcttagcatactcccctggattccagtatgttaatgtta Alignment from GeneWise AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACC------ATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGAC------CTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG cacaccccttggttcttcacacaacacctactgtgttttcccctatgtagGGAAAGCAGATGGAGTTCTTAATGGAGAGCATAATAAGGAAAAAGAAGACCCATACTTTGTGGAGAGCCCTTATGGTTTTGACCTAGATGTAGATTTTGTCAAATACAATGATGATATACAGAAGGGAAATATTATTAAAACACTGAATATCCAGAAAAGGCAAAAACCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCCGGTCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAGA------GACAGCAAGCAGTGTCCAACATTCCTCCTAGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACATTTACAGTATCAGAAAACCAACATCTGCTGCCATCTCCCTCAGTGCAACTC---AGGCACAACCTTGATGCCACAAAGATCACAATGGAGACCGATAGAAGATTAGATGAGGGTCAAGTTACCATGCACATGCAAATGGCAACAGGTGATGTTAGGCGGCCCAGGTTGTCAAGTTTTGGAGGTACAGGATCCACTAGCTCAATTCTTACCTTCGTAGGATCTGCCAACCATAGCTCTGCTATACATCAGCTTCAGATCGGCTGTCAAGGCAAT---TATTACAACAGCCATGATCCAGCAGCTCCAACAACATCTTCCATGGGTAGCTCTGCACGACATACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGCGAGCAGATGGCTAATGCATTACAACACCTAAAGGACCTTGAGGAACAGGTTAGAACCATCCCAGTAATCCAGGTCAAGATCTCTGTGTTACAAGAAGAGATGAGGCAGTTGGTGTCACAGTTGAAAAGTCAGCGTAACTCATCTCAGAATGAAGCATGTAGTGTGAAGGAGCGCTCCTATAGTGCAGGCAATGCCTCTCAATTGGAACGACTTGCCCAGGCACGCAGAGGCAGTGGAGAATTATATATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGGTCCAGGAATTTCAACTGCTA---------ATGCAGACACTTGAACAAAGATTGCAGGATAGTAGTTGTGAGGTGGCATCAGAACCTGGGGGAAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCTGTAGCTGTGGGAACT---GAGAACATGAATGATGTTGTCGTGTATCATAGGGACTTATGGGTTTGTAAAGATACA---GTTGGTACAGTCACTGAAACAACAAATGTGGGGATTAGCGTGTCAGAAGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACAATAGATGCATTGAAAGAGAAGGTGTACTGTCTAGAGGTGCTACTTAAAGAG---ACTCATGATTGTGAGATGACTAAGCTCAAACAGGAATTACAGGCTGTTGGCGCCAGGAAAAAAGTTGATAAGGCTACAAAGGTTCAACCACTGGTGTTCAGTATATTGGTGGAGGCATTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGAACATCTGTTAAGATGAGCAGTCTAGGCATCTCCTGCCATCCTGAATGCAAGAACCAAGTTGTGGGATCTGAACTACCCATGAATTGGTGG------------AGGGTGGGAATGCATGCCCAGTGTGTAGGGATGTCTGCAGAAACCTGTGACCGAAGTATTGGTGTGGAAGTGAGTGTTTGTGAAACAGGTGGTAACGCAGAAGCATCTGGGGGTGATCGTGATCTGCCATTACTTAAAACTAACTTGAATCTCAAGGTAGTGCAGTCTATTGGGTGTGAAGATTGTTCTGTAGCTGTGATAGTTTGTTTTCCCAGGGAGCGTACCTCCTATAGCATGAACACAGGAGCTGTAGGCCAAGAGGAGGCAGCAGTCATGGCAGTTCCCCATACTACAGATCAATATACCAGTACCAATCTAGAGCAGATAGACCTATGCACTAATACGGAAGCCACAACCCTAGTTGAGTCCTGTTCCAATACACTCTTAAGTACCGTAGACAGAGAAACAAGTACCCACACTGTTGAGATGCGGTCATTGGCTGTTGGAGAAGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTTCAGTGCTGTCAGGCAATTGTGAATTTGCAAGACCATGTGCTGTCAAAAACAAGGAGTCTGGTGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGCCTCAAGATGAGAACCATTGTA---GGTCCTCCA---CTGACTGTGGGGTTAATAGGTAGCCGGAGGAGCGTCGGTGTTGGCAATGAAACTATAAGAGAGTTCCCAGAGGAATCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGCTGGATCACTATATTGAGTGTGTACAG---ACACTTGCAGACCAACAGCCACTTCTGGTTGAGAACTATGGCGAGCTTACAGAGGCATTTGGGGAGCCTCACTCACAGATTGGTTCTCTCAATTCACAACTCATAAGCACCATATCATCCATTAATTCAGTCATGAAATCTGCGAGCACAAAAGAACTCAGGAAATCCGATTTTCAAGAACCTGGTTTGGGCAAGACTGAGGgtgaggagcactcttagcatactcccctggattccagtatgttaatgtta #### Kank1_ID5456_3 --> 2 - 1 Original Alignment gaAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACg aagatttaggaatatctcaatactgcaagactaatgacattttcctctaggaAATCATTTAGAGTACACCTGTGAATGTGGTGGCCTACAGTCTGGAGGACTGATTAATCTACAACCATCCCAGCCTAAAGTGGAAGCAGAGGCTGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCAATGCAAGGGAGCAACCTGGCTCCAGTAAACCTAACAGATGACCAGATAGCAACGGGGCTTTACagtatcacctctttcaatctgtgagccccactagccattaagaactgactt Alignment from CESAR gaAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACg aagatttaggaatatctcaatactgcaagactaatgacattttcctctaggaAATCATTTAGAGTACACCTGTGAATGTGGTGGCCTACAGTCTGGAGGACTGATTAATCTACAACCATCCCAGCCTAAAGTGGAAGCAGAGGCTGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCAATGCAAGGGAGCAACCTGGCTCCAGTAAACCTAACAGATGACCAGATAGCAACGGGGCTTTACagtatcacctctttcaatctgtgagccccactagccattaagaactgactt Alignment from Spaln_aa2Genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagatttaggaatatctcaatactgcaagactaatgacattttcctctagGAAATCATTTAGAGTACACCTGTGAATGTGGTGGCCTACAGTCTGGAGGACTGATTAATCTACAACCATCCCAGCCTAAAGTGGAAGCAGAGGCTGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCAATGCAAGGGAGCAACCTGGCTCCAGTAAACCTAACAGATGACCAGATAGCAACGGGGCTTTACAgtatcacctctttcaatctgtgagccccactagccattaagaactgactt Alignment from Spaln_nt2Genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagatttaggaatatctcaatactgcaagactaatgacattttcctctagGAAATCATTTAGAGTACACCTGTGAATGTGGTGGCCTACAGTCTGGAGGACTGATTAATCTACAACCATCCCAGCCTAAAGTGGAAGCAGAGGCTGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCAATGCAAGGGAGCAACCTGGCTCCAGTAAACCTAACAGATGACCAGATAGCAACGGGGCTTTACAgtatcacctctttcaatctgtgagccccactagccattaagaactgactt Alignment from Pairagon GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagatttaggaatatctcaatactgcaagactaatgacattttcctctagGAAATCATTTAGAGTACACCTGTGAATGTGGTGGCCTACAGTCTGGAGGACTGATTAATCTACAACCATCCCAGCCTAAAGTGGAAGCAGAGGCTGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCAATGCAAGGGAGCAACCTGGCTCCAGTAAACCTAACAGATGACCAGATAGCAACGGGGCTTTACAgtatcacctctttcaatctgtgagccccactagccattaagaactgactt Alignment from Exonerate_protein2genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagatttaggaatatctcaatactgcaagactaatgacattttcctctagGAAATCATTTAGAGTACACCTGTGAATGTGGTGGCCTACAGTCTGGAGGACTGATTAATCTACAACCATCCCAGCCTAAAGTGGAAGCAGAGGCTGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCAATGCAAGGGAGCAACCTGGCTCCAGTAAACCTAACAGATGACCAGATAGCAACGGGGCTTTACAgtatcacctctttcaatctgtgagccccactagccattaagaactgactt Alignment from Exonerate_coding2genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagatttaggaatatctcaatactgcaagactaatgacattttcctctagGAAATCATTTAGAGTACACCTGTGAATGTGGTGGCCTACAGTCTGGAGGACTGATTAATCTACAACCATCCCAGCCTAAAGTGGAAGCAGAGGCTGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCAATGCAAGGGAGCAACCTGGCTCCAGTAAACCTAACAGATGACCAGATAGCAACGGGGCTTTACAgtatcacctctttcaatctgtgagccccactagccattaagaactgactt Alignment from GeneWise GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagatttaggaatatctcaatactgcaagactaatgacattttcctctagGAAATCATTTAGAGTACACCTGTGAATGTGGTGGCCTACAGTCTGGAGGACTGATTAATCTACAACCATCCCAGCCTAAAGTGGAAGCAGAGGCTGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCAATGCAAGGGAGCAACCTGGCTCCAGTAAACCTAACAGATGACCAGATAGCAACGGGGCTTTACAgtatcacctctttcaatctgtgagccccactagccattaagaactgactt #### Kank1_ID5457_4 --> 2 - 2 Original Alignment taTGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCgg gatctaagtatcctgccacatcatgcttaacttatctcttcacttttcagtcTGTCCAAATAACGAAAACACCTTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCCAATGGAGCTAAAAAAAATCTTCAGTTCATTGGCATTAATGGTgggtgagcaagcagtggaggataccagatatccaaaggctccccctgcaaag Alignment from CESAR taTGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCgg gatctaagtatcctgccacatcatgcttaacttatctcttcacttttcagtcTGTCCAAATAACGAAAACACCTTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCCAATGGAGCTAAAAAAAATCTTCAGTTCATTGGCATTAATGGTgggtgagcaagcagtggaggataccagatatccaaaggctccccctgcaaag Alignment from Spaln_aa2Genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaagtatcctgccacatcatgcttaacttatctcttcacttttcagTCTGTCCAAATAACGAAAACACCTTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCCAATGGAGCTAAAAAAAATCTTCAGTTCATTGGCATTAATGGTGGgtgagcaagcagtggaggataccagatatccaaaggctccccctgcaaag Alignment from Spaln_nt2Genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaagtatcctgccacatcatgcttaacttatctcttcacttttcagTCTGTCCAAATAACGAAAACACCTTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCCAATGGAGCTAAAAAAAATCTTCAGTTCATTGGCATTAATGGTGGgtgagcaagcagtggaggataccagatatccaaaggctccccctgcaaag Alignment from Pairagon TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaagtatcctgccacatcatgcttaacttatctcttcacttttcagTCTGTCCAAATAACGAAAACACCTTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCCAATGGAGCTAAAAAAAATCTTCAGTTCATTGGCATTAATGGTGGgtgagcaagcagtggaggataccagatatccaaaggctccccctgcaaag Alignment from Exonerate_protein2genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaagtatcctgccacatcatgcttaacttatctcttcacttttcagTCTGTCCAAATAACGAAAACACCTTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCCAATGGAGCTAAAAAAAATCTTCAGTTCATTGGCATTAATGGTGGgtgagcaagcagtggaggataccagatatccaaaggctccccctgcaaag Alignment from Exonerate_coding2genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaagtatcctgccacatcatgcttaacttatctcttcacttttcagTCTGTCCAAATAACGAAAACACCTTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCCAATGGAGCTAAAAAAAATCTTCAGTTCATTGGCATTAATGGTGGgtgagcaagcagtggaggataccagatatccaaaggctccccctgcaaag Alignment from GeneWise TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaagtatcctgccacatcatgcttaacttatctcttcacttttcagTCTGTCCAAATAACGAAAACACCTTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCCAATGGAGCTAAAAAAAATCTTCAGTTCATTGGCATTAATGGTGGgtgagcaagcagtggaggataccagatatccaaaggctccccctgcaaag #### Kank1_ID5463_9 --> 0 - 0 Original Alignment GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tattagtcaataggtcagattggttgttaatgaaatctttaaatccacagCCAGGACAGACGCCCCTTATGCTAGCTGTGACCCATGGGAGAACGGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAGGGCTTCACAAGCCTAATGTGCTCAGGTGAACATGGGGATGTGGGAATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATATTgtgagccttcctgtgggtgtgatgtagcatcagctgcgttcagaggtgtg Alignment from CESAR GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tattagtcaataggtcagattggttgttaatgaaatctttaaatccacagCCAGGACAGACGCCCCTTATGCTAGCTGTGACCCATGGGAGAACGGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAGGGCTTCACAAGCCTAATGTGCTCAGGTGAACATGGGGATGTGGGAATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATATTgtgagccttcctgtgggtgtgatgtagcatcagctgcgttcagaggtgtg Alignment from Spaln_aa2Genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tattagtcaataggtcagattggttgttaatgaaatctttaaatccacagCCAGGACAGACGCCCCTTATGCTAGCTGTGACCCATGGGAGAACGGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAGGGCTTCACAAGCCTAATGTGCTCAGGTGAACATGGGGATGTGGGAATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATATTgtgagccttcctgtgggtgtgatgtagcatcagctgcgttcagaggtgtg Alignment from Spaln_nt2Genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tattagtcaataggtcagattggttgttaatgaaatctttaaatccacagCCAGGACAGACGCCCCTTATGCTAGCTGTGACCCATGGG-----AGA-ACGGAGAAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAGGGCTTCACAAGCCTAATGTGCTCAGGTGAACATGGGGATGTGGGAATTGT---GTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATATTgtgagccttcctgtgggtgtgatgtagcatcagctgcgttcagaggtgtg Alignment from Pairagon GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGG----CGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tattagtcaataggtcagattggttgttaatgaaatctttaaatccacagCCAGGACAGACGCCCCTTATGCTAGCTGTGACCCATGGGAGAACGGA----------GAAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAGGGCTTCACAAGCCTAATGTGCTCAGGTGAACATGGGGATGTGGGAATTGT---GTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATATTgtgagccttcctgtgggtgtgatgtagcatcagctgcgttcagaggtgtg Alignment from Exonerate_protein2genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAATGATGGCAGCACCGCTC tattagtcaataggtcagattggttgttaatgaaatctttaaatccacagCCAGGACAGACGCCCCTTATGCTAGCTGTGACCCATGGGAGAACGGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAGGGCTTCACAAGCCTAATGTGCTCAGGTGAACATGGGGATGTGGGAATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATATTGTGAGCCTTCCTGTGGgtgtgatgtagcatcagctgcgttcagaggtgtg Alignment from Exonerate_coding2genome tattagtcaataggtcagattggttgttaatgaaatctttaaatccacagccaggacagacgccccttatgctagctgtgacccatgggagaacggagaagggcctcctagcttgtggtgctgatgtcaatattgaggaggatgagggcttcacaagcctaatgtgctcaggtgaacatggggatgtgggaattgtgttgctgctggctcaagaggggtgtaatggccaattggaggatattgtgagccttcctgtgggtgtgatgtagcatcagctgcgttcagaggtgtg Alignment from GeneWise GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tattagtcaataggtcagattggttgttaatgaaatctttaaatccacagCCAGGACAGACGCCCCTTATGCTAGCTGTGACCCATGGGAGAACGGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAGGGCTTCACAAGCCTAATGTGCTCAGGTGAACATGGGGATGTGGGAATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATATTgtgagccttcctgtgggtgtgatgtagcatcagctgcgttcagaggtgtg #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaaggcTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaaggcTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA tgagcctataccaggagaaggagcaggacttcctttctttgttttaaaagGCTATGAACTCTCAAAAGTTGATGGGAAAACTGGCACCCCTGAGAAACCCCTATCTGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGTCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgagggagcaaatcagtaggatgtgctatgatctcacaggtgtat #### Kazald1_ID9300_2 --> 2 - 0 Original Alignment agCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG atccatcatgttgaagcatccaccgtctaattcttccctcttctctgcagagTCACAGATTCTATCACAGACGCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCAATGACTTTAATT---------------GGCTTTGGAATTCAGCTGCCGGGTGATGACCCACATATCTCCTTGCAGgtatgccatggggttactgcccagtttatttgcgtagaggtgtttatagt Alignment from CESAR agCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG atccatcatgttgaagcatccaccgtctaattcttccctcttctctgcagagTCACAGATTCTATCACAGACGCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCAATGACTTTAATT---------------GGCTTTGGAATTCAGCTGCCGGGTGATGACCCACATATCTCCTTGCAGgtatgccatggggttactgcccagtttatttgcgtagaggtgtttatagt Alignment from Spaln_aa2Genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG atccatcatgttgaagcatccaccgtctaattcttccctcttctctgcagAGTCACAGATTCTATCACAGACGCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCAATGACTTTAATT---------------GGCTTTGGAATTCAGCTGCCGGGTGATGACCCACATATCTCCTTGCAGgtatgccatggggttactgcccagtttatttgcgtagaggtgtttatagt Alignment from Spaln_nt2Genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG atccatcatgttgaagcatccaccgtctaattcttccctcttctctgcagAGTCACAGATTCTATCACAGACGCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCAATGACTTTAAT---------------TGGCTTTGGAATTCAGCTGCCGGGTGATGACCCACATATCTCCTTGCAGgtatgccatggggttactgcccagtttatttgcgtagaggtgtttatagt Alignment from Pairagon AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG atccatcatgttgaagcatccaccgtctaattcttccctcttctctgcagAGTCACAGATTCTATCACAGACGCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCAATGACTTTAAT---------------TGGCTTTGGAATTCAGCTGCCGGGTGATGACCCACATATCTCCTTGCAGgtatgccatggggttactgcccagtttatttgcgtagaggtgtttatagt Alignment from Exonerate_protein2genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG atccatcatgttgaagcatccaccgtctaattcttccctcttctctgcagAGTCACAGATTCTATCACAGACGCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCAATGACTTTAATT---------------GGCTTTGGAATTCAGCTGCCGGGTGATGACCCACATATCTCCTTGCAGgtatgccatggggttactgcccagtttatttgcgtagaggtgtttatagt Alignment from Exonerate_coding2genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG atccatcatgttgaagcatccaccgtctaattcttccctcttctctgcagAGTCACAGATTCTATCACAGACGCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCAATGACTTTAATT---------------GGCTTTGGAATTCAGCTGCCGGGTGATGACCCACATATCTCCTTGCAGgtatgccatggggttactgcccagtttatttgcgtagaggtgtttatagt Alignment from GeneWise AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG atccatcatgttgaagcatccaccgtctaattcttccctcttctctgcagAGTCACAGATTCTATCACAGACGCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCAATGACTTTAATT---------------GGCTTTGGAATTCAGCTGCCGGGTGATGACCCACATATCTCCTTGCAGgtatgccatggggttactgcccagtttatttgcgtagaggtgtttatagt #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttgccttgtaactgagctctcttcgtgcttccctacagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtacgtaaatgcaagagcggttagggtttgaaaaagggttctaggtttaa Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttgccttgtaactgagctctcttcgtgcttccctacagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtacgtaaatgcaagagcggttagggtttgaaaaagggttctaggtttaa Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttgccttgtaactgagctctcttcgtgcttccctacagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtacgtaaatgcaagagcggttagggtttgaaaaagggttctaggtttaa Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttgccttgtaactgagctctcttcgtgcttccctacagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtacgtaaatgcaagagcggttagggtttgaaaaagggttctaggtttaa Alignment from Pairagon AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttgccttgtaactgagctctcttcgtgcttccctacagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtacgtaaatgcaagagcggttagggtttgaaaaagggttctaggtttaa Alignment from Exonerate_protein2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttgccttgtaactgagctctcttcgtgcttccctacagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtacgtaaatgcaagagcggttagggtttgaaaaagggttctaggtttaa Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttgccttgtaactgagctctcttcgtgcttccctacagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtacgtaaatgcaagagcggttagggtttgaaaaagggttctaggtttaa Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttccctcaacttgccttgtaactgagctctcttcgtgcttccctacagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtacgtaaatgcaagagcggttagggtttgaaaaagggttctaggtttaa #### Kcnk18_ID12922_2 --> 2 - 1 Original Alignment tgGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGg caggcaatagcctctggatggactgccatgtctttatgtttccccatcagtgGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGTGCTCTCTTCTTCTGCTGCACGGTGTTCAGCACGGTGggccagtagcagccaagccaacactgtcatggatacaattaacttcacatg Alignment from CESAR tgGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGg caggcaatagcctctggatggactgccatgtctttatgtttccccatcagtgGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGTGCTCTCTTCTTCTGCTGCACGGTGTTCAGCACGGTGggccagtagcagccaagccaacactgtcatggatacaattaacttcacatg Alignment from Spaln_aa2Genome TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGG caggcaatagcctctggatggactgccatgtctttatgtttccccatcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGTGCTCTCTTCTTCTGCTGCACGGTGTTCAGCACGGTGGgccagtagcagccaagccaacactgtcatggatacaattaacttcacatg Alignment from Spaln_nt2Genome TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGGGTTA caggcaatagcctctggatggactgccatgtctttatgtttccccatcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGTGCTCTCTTCTTCTGCTGCACGGTGTTCAGCACGGTGGGCCAgtagcagccaagccaacactgtcatggatacaattaacttcacatg Alignment from Pairagon TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGGGTTA caggcaatagcctctggatggactgccatgtctttatgtttccccatcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGTGCTCTCTTCTTCTGCTGCACGGTGTTCAGCACGGTGGGCCAgtagcagccaagccaacactgtcatggatacaattaacttcacatg Alignment from Exonerate_protein2genome TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACA caggcaatagcctctggatggactgccatgtctttatgtttccccatcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGTGCTCTCTTCTTCTGCTGCACGGTGTTCAGCACGgtgggccagtagcagccaagccaacactgtcatggatacaattaacttcacatg Alignment from Exonerate_coding2genome TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACA caggcaatagcctctggatggactgccatgtctttatgtttccccatcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGTGCTCTCTTCTTCTGCTGCACGGTGTTCAGCACGgtgggccagtagcagccaagccaacactgtcatggatacaattaacttcacatg Alignment from GeneWise TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACA caggcaatagcctctggatggactgccatgtctttatgtttccccatcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGTGCTCTCTTCTTCTGCTGCACGGTGTTCAGCACGgtgggccagtagcagccaagccaacactgtcatggatacaattaacttcacatg #### Kdm2a_ID508_12 --> 0 - 0 Original Alignment ATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCAAAAAGGGATAAG ttgtttccctgtgacctgtggataccaccctctgccaccaccacccacagATCTTACTGGAAGAACTTACCAGCAGCGATCCCAAGTTGGCCCTCACTGGAGTGCCGATTGTCCCTTGGCCAAGAAGGGATAAAgtaagtgacttgctaccttagaataggtgtgctcaagtaaacatatctgg Alignment from CESAR ATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCAAAAAGGGATAAG ttgtttccctgtgacctgtggataccaccctctgccaccaccacccacagATCTTACTGGAAGAACTTACCAGCAGCGATCCCAAGTTGGCCCTCACTGGAGTGCCGATTGTCCCTTGGCCAAGAAGGGATAAAgtaagtgacttgctaccttagaataggtgtgctcaagtaaacatatctgg Alignment from Spaln_aa2Genome ATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCAAAAAGGGATAAG ttgtttccctgtgacctgtggataccaccctctgccaccaccacccacagATCTTACTGGAAGAACTTACCAGCAGCGATCCCAAGTTGGCCCTCACTGGAGTGCCGATTGTCCCTTGGCCAAGAAGGGATAAAgtaagtgacttgctaccttagaataggtgtgctcaagtaaacatatctgg Alignment from Spaln_nt2Genome ATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCAAAAAGGGATAAG ttgtttccctgtgacctgtggataccaccctctgccaccaccacccacagATCTTACTGGAAGAACTTACCAGCAGCGATCCCAAGTTGGCCCTCACTGGAGTGCCGATTGTCCCTTGGCCAAGAAGGGATAAAgtaagtgacttgctaccttagaataggtgtgctcaagtaaacatatctgg Alignment from Pairagon ATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCAAAAAGGGATAAG ttgtttccctgtgacctgtggataccaccctctgccaccaccacccacagATCTTACTGGAAGAACTTACCAGCAGCGATCCCAAGTTGGCCCTCACTGGAGTGCCGATTGTCCCTTGGCCAAGAAGGGATAAAgtaagtgacttgctaccttagaataggtgtgctcaagtaaacatatctgg Alignment from Exonerate_protein2genome ATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCAAAAAGGGATAAG ttgtttccctgtgacctgtggataccaccctctgccaccaccacccacagATCTTACTGGAAGAACTTACCAGCAGCGATCCCAAGTTGGCCCTCACTGGAGTGCCGATTGTCCCTTGGCCAAGAAGGGATAAAgtaagtgacttgctaccttagaataggtgtgctcaagtaaacatatctgg Alignment from Exonerate_coding2genome ATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCAAAAAGGGATAAG ttgtttccctgtgacctgtggataccaccctctgccaccaccacccacagATCTTACTGGAAGAACTTACCAGCAGCGATCCCAAGTTGGCCCTCACTGGAGTGCCGATTGTCCCTTGGCCAAGAAGGGATAAAgtaagtgacttgctaccttagaataggtgtgctcaagtaaacatatctgg Alignment from GeneWise ATTTTGCTGGAAGAACTTGCCAGTAGCGATCCCAAGTTAGCCCTCACTGGAGTCCCTATAGTACAGTGGCCAAAAAGGGATAAG ttgtttccctgtgacctgtggataccaccctctgccaccaccacccacagATCTTACTGGAAGAACTTACCAGCAGCGATCCCAAGTTGGCCCTCACTGGAGTGCCGATTGTCCCTTGGCCAAGAAGGGATAAAgtaagtgacttgctaccttagaataggtgtgctcaagtaaacatatctgg #### Kdm2a_ID511_10 --> 0 - 1 Original Alignment GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg cttgtgaggtgacttaacaggtatcctcaccatgctttcttaacccgcagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTATATATATTGCATAACCAATCGGTCTCATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGggtagtaccaataaataagatcaaagatagtgcccccccagcccccttttt Alignment from CESAR GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg cttgtgaggtgacttaacaggtatcctcaccatgctttcttaacccgcagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTATATATATTGCATAACCAATCGGTCTCATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGggtagtaccaataaataagatcaaagatagtgcccccccagcccccttttt Alignment from Spaln_aa2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaggtgacttaacaggtatcctcaccatgctttcttaacccgcagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTATATATATTGCATAACCAATCGGTCTCATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtagtaccaataaataagatcaaagatagtgcccccccagcccccttttt Alignment from Spaln_nt2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaggtgacttaacaggtatcctcaccatgctttcttaacccgcagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTATATATATTGCATAACCAATCGGTCTCATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtagtaccaataaataagatcaaagatagtgcccccccagcccccttttt Alignment from Pairagon GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaggtgacttaacaggtatcctcaccatgctttcttaacccgcagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTATATATATTGCATAACCAATCGGTCTCATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtagtaccaataaataagatcaaagatagtgcccccccagcccccttttt Alignment from Exonerate_protein2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaggtgacttaacaggtatcctcaccatgctttcttaacccgcagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTATATATATTGCATAACCAATCGGTCTCATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtagtaccaataaataagatcaaagatagtgcccccccagcccccttttt Alignment from Exonerate_coding2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaggtgacttaacaggtatcctcaccatgctttcttaacccgcagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTATATATATTGCATAACCAATCGGTCTCATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtagtaccaataaataagatcaaagatagtgcccccccagcccccttttt Alignment from GeneWise GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaggtgacttaacaggtatcctcaccatgctttcttaacccgcagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTATATATATTGCATAACCAATCGGTCTCATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtagtaccaataaataagatcaaagatagtgcccccccagcccccttttt #### Kdm2a_ID516_5 --> 2 - 0 Original Alignment ggAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG gattctgcattatactatgagagacagtctgtattcctattctcttgtagggAGCCGTCGGATGGTAGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtaaacttttgctgccctttttaaaatgttgatatgccaggtttttcccc Alignment from CESAR ggAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG gattctgcattatactatgagagacagtctgtattcctattctcttgtagggAGCCGTCGGATGGTAGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtaaacttttgctgccctttttaaaatgttgatatgccaggtttttcccc Alignment from Spaln_aa2Genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG gattctgcattatactatgagagacagtctgtattcctattctcttgtagGGAGCCGTCGGATGGTAGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtaaacttttgctgccctttttaaaatgttgatatgccaggtttttcccc Alignment from Spaln_nt2Genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG gattctgcattatactatgagagacagtctgtattcctattctcttgtagGGAGCCGTCGGATGGTAGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtaaacttttgctgccctttttaaaatgttgatatgccaggtttttcccc Alignment from Pairagon GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG gattctgcattatactatgagagacagtctgtattcctattctcttgtagGGAGCCGTCGGATGGTAGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtaaacttttgctgccctttttaaaatgttgatatgccaggtttttcccc Alignment from Exonerate_protein2genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG gattctgcattatactatgagagacagtctgtattcctattctcttgtagGGAGCCGTCGGATGGTAGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtaaacttttgctgccctttttaaaatgttgatatgccaggtttttcccc Alignment from Exonerate_coding2genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG gattctgcattatactatgagagacagtctgtattcctattctcttgtagGGAGCCGTCGGATGGTAGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtaaacttttgctgccctttttaaaatgttgatatgccaggtttttcccc Alignment from GeneWise TCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG gattctgcattatactatgagagacagtctgtattcctattctcttgtagggagCCGTCGGATGGTAGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtaaacttttgctgccctttttaaaatgttgatatgccaggtttttcccc #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa gataatcaccaatcttacagaggtgtttacagatcactgtctgctttcagatTTTAATGATGAATATTTACAACAGGGTGGGCTGAGGCACCACCTTACCTTTAAGAATGCAGATGGACTTGGAATCaggtgaagcctctgggtcataatgctatgataattgggatgcatagtaaaaa Alignment from CESAR atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa gataatcaccaatcttacagaggtgtttacagatcactgtctgctttcagatTTTAATGATGAATATTTACAACAGGGTGGGCTGAGGCACCACCTTACCTTTAAGAATGCAGATGGACTTGGAATCaggtgaagcctctgggtcataatgctatgataattgggatgcatagtaaaaa Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA gataatcaccaatcttacagaggtgtttacagatcactgtctgctttcagATTTTAATGATGAATATTTACAACAGGGTGGGCTGAGGCACCACCTTACCTTTAAGAATGCAGATGGACTTGGAATCAGgtgaagcctctgggtcataatgctatgataattgggatgcatagtaaaaa Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA gataatcaccaatcttacagaggtgtttacagatcactgtctgctttcagATTTTAATGATGAATATTTACAACAGGGTGGGCTGAGGCACCACCTTACCTTTAAGAATGCAGATGGACTTGGAATCAGgtgaagcctctgggtcataatgctatgataattgggatgcatagtaaaaa Alignment from Pairagon ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA gataatcaccaatcttacagaggtgtttacagatcactgtctgctttcagATTTTAATGATGAATATTTACAACAGGGTGGGCTGAGGCACCACCTTACCTTTAAGAATGCAGATGGACTTGGAATCAGgtgaagcctctgggtcataatgctatgataattgggatgcatagtaaaaa Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA gataatcaccaatcttacagaggtgtttacagatcactgtctgctttcagATTTTAATGATGAATATTTACAACAGGGTGGGCTGAGGCACCACCTTACCTTTAAGAATGCAGATGGACTTGGAATCAGgtgaagcctctgggtcataatgctatgataattgggatgcatagtaaaaa Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA gataatcaccaatcttacagaggtgtttacagatcactgtctgctttcagATTTTAATGATGAATATTTACAACAGGGTGGGCTGAGGCACCACCTTACCTTTAAGAATGCAGATGGACTTGGAATCAGgtgaagcctctgggtcataatgctatgataattgggatgcatagtaaaaa Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA gataatcaccaatcttacagaggtgtttacagatcactgtctgctttcagATTTTAATGATGAATATTTACAACAGGGTGGGCTGAGGCACCACCTTACCTTTAAGAATGCAGATGGACTTGGAATCAGgtgaagcctctgggtcataatgctatgataattgggatgcatagtaaaaa #### Keg1_ID3447_4 --> 2 - 2 Original Alignment gtTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAG---CTCACGCCTct acaaacactaagtcttcctcgccattatattattgtgtttctctttctaggcTCACAGTCACACCTGGGCCAAGCAATAGAAAGTTTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTGTGCCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCACAATAAGCAGCACACACCTctgtagggtcagctgaatctactctgggattctattagcacacgataaaaga Alignment from CESAR gtTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAG---CTCACGCCTct acaaacactaagtcttcctcgccattatattattgtgtttctctttctaggcTCACAGTCACACCTGGGCCAAGCAATAGAAAGTTTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTGTGCCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCACAATAAGCAGCACACACCTctgtagggtcagctgaatctactctgggattctattagcacacgataaaaga Alignment from Spaln_aa2Genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTC---ACGCCTCT acaaacactaagtcttcctcgccattatattattgtgtttctctttctagGCTCACAGTCACACCTGGGCCAAGCAATAGAAAGTTTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTGTGCCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCACAATAAGCAGCACACACCTCTgtagggtcagctgaatctactctgggattctattagcacacgataaaaga Alignment from Spaln_nt2Genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCT---CACGCCTCT acaaacactaagtcttcctcgccattatattattgtgtttctctttctagGCTCACAGTCACACCTGGGCCAAGCAATAGAAAGTTTAGGAGCCACCAATTTGGGCAAAGT---TCATAAACAGTGCTTCCTCTATATGGTGTGCCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCACAATAAGCAGCACACACCTCTgtagggtcagctgaatctactctgggattctattagcacacgataaaaga Alignment from Pairagon GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACA---AGCTCACGCCTCT acaaacactaagtcttcctcgccattatattattgtgtttctctttctagGCTCACAGTCACACCTGGGCCAAGCAATAGAAAGTTTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTGTGCCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCACAATAAGCAGCACACACCTCTgtagggtcagctgaatctactctgggattctattagcacacgataaaaga Alignment from Exonerate_protein2genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTC---ACGCCTCT acaaacactaagtcttcctcgccattatattattgtgtttctctttctagGCTCACAGTCACACCTGGGCCAAGCAATAGAAAGTTTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTGTGCCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCACAATAAGCAGCACACACCTCTgtagggtcagctgaatctactctgggattctattagcacacgataaaaga Alignment from Exonerate_coding2genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTC---ACGCCTCT acaaacactaagtcttcctcgccattatattattgtgtttctctttctagGCTCACAGTCACACCTGGGCCAAGCAATAGAAAGTTTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTGTGCCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCACAATAAGCAGCACACACCTCTgtagggtcagctgaatctactctgggattctattagcacacgataaaaga Alignment from GeneWise GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTC---ACGCCTCT acaaacactaagtcttcctcgccattatattattgtgtttctctttctagGCTCACAGTCACACCTGGGCCAAGCAATAGAAAGTTTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTGTGCCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCACAATAAGCAGCACACACCTCTgtagggtcagctgaatctactctgggattctattagcacacgataaaaga #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc ggggcatcaaattgctttacctggatataataccctcttccctctcacagGTTATTGGGGCATCTACAAAACAAATTGATGTTTATCAAAGTATTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTgtgtaagaaacaattgcctttttaaccttggagcataagggaattactgcta Alignment from CESAR GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc ggggcatcaaattgctttacctggatataataccctcttccctctcacagGTTATTGGGGCATCTACAAAACAAATTGATGTTTATCAAAGTATTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTgtgtaagaaacaattgcctttttaaccttggagcataagggaattactgcta Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC ggggcatcaaattgctttacctggatataataccctcttccctctcacagGTTATTGGGGCATCTACAAAACAAATTGATGTTTATCAAAGTATTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaattgcctttttaaccttggagcataagggaattactgcta Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC ggggcatcaaattgctttacctggatataataccctcttccctctcacagGTTATTGGGGCATCTACAAAACAAATTGATGTTTATCAAAGTATTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaattgcctttttaaccttggagcataagggaattactgcta Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC ggggcatcaaattgctttacctggatataataccctcttccctctcacagGTTATTGGGGCATCTACAAAACAAATTGATGTTTATCAAAGTATTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaattgcctttttaaccttggagcataagggaattactgcta Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC ggggcatcaaattgctttacctggatataataccctcttccctctcacagGTTATTGGGGCATCTACAAAACAAATTGATGTTTATCAAAGTATTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaattgcctttttaaccttggagcataagggaattactgcta Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC ggggcatcaaattgctttacctggatataataccctcttccctctcacagGTTATTGGGGCATCTACAAAACAAATTGATGTTTATCAAAGTATTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaattgcctttttaaccttggagcataagggaattactgcta Alignment from GeneWise GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC ggggcatcaaattgctttacctggatataataccctcttccctctcacagGTTATTGGGGCATCTACAAAACAAATTGATGTTTATCAAAGTATTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaattgcctttttaaccttggagcataagggaattactgcta #### Kif11_ID7314_4 --> 1 - 0 Original Alignment aTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG agcacaagctcttggattcattaattttagttttctctctcttcccatagaTATGGCCAGACAGGGGCTGGCAAGACTTTTACTATGGAGGGTGAGAGATCACCTAATGAAGTATACACCTGGGAGGAAgtaagcgatctcgtatctttttgtcagttgtaacatccattccagtgctt Alignment from CESAR aTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG agcacaagctcttggattcattaattttagttttctctctcttcccatagaTATGGCCAGACAGGGGCTGGCAAGACTTTTACTATGGAGGGTGAGAGATCACCTAATGAAGTATACACCTGGGAGGAAgtaagcgatctcgtatctttttgtcagttgtaacatccattccagtgctt Alignment from Spaln_aa2Genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG agcacaagctcttggattcattaattttagttttctctctcttcccatagATATGGCCAGACAGGGGCTGGCAAGACTTTTACTATGGAGGGTGAGAGATCACCTAATGAAGTATACACCTGGGAGGAAgtaagcgatctcgtatctttttgtcagttgtaacatccattccagtgctt Alignment from Spaln_nt2Genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG agcacaagctcttggattcattaattttagttttctctctcttcccatagATATGGCCAGACAGGGGCTGGCAAGACTTTTACTATGGAGGGTGAGAGATCACCTAATGAAGTATACACCTGGGAGGAAgtaagcgatctcgtatctttttgtcagttgtaacatccattccagtgctt Alignment from Pairagon ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG agcacaagctcttggattcattaattttagttttctctctcttcccatagATATGGCCAGACAGGGGCTGGCAAGACTTTTACTATGGAGGGTGAGAGATCACCTAATGAAGTATACACCTGGGAGGAAgtaagcgatctcgtatctttttgtcagttgtaacatccattccagtgctt Alignment from Exonerate_protein2genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG agcacaagctcttggattcattaattttagttttctctctcttcccatagATATGGCCAGACAGGGGCTGGCAAGACTTTTACTATGGAGGGTGAGAGATCACCTAATGAAGTATACACCTGGGAGGAAgtaagcgatctcgtatctttttgtcagttgtaacatccattccagtgctt Alignment from Exonerate_coding2genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG agcacaagctcttggattcattaattttagttttctctctcttcccatagATATGGCCAGACAGGGGCTGGCAAGACTTTTACTATGGAGGGTGAGAGATCACCTAATGAAGTATACACCTGGGAGGAAgtaagcgatctcgtatctttttgtcagttgtaacatccattccagtgctt Alignment from GeneWise ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG agcacaagctcttggattcattaattttagttttctctctcttcccatagATATGGCCAGACAGGGGCTGGCAAGACTTTTACTATGGAGGGTGAGAGATCACCTAATGAAGTATACACCTGGGAGGAAgtaagcgatctcgtatctttttgtcagttgtaacatccattccagtgctt #### Kif11_ID7317_7 --> 1 - 0 Original Alignment tCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG aggctcttgtgacctgccatatcaaattcaatcccttgctccctttacagtCGTTCACACTCAGTTTTTTCTGTTATGATACACATGAAAGAAACAACAATCGATGGAGAACAGCTTGTTAAAATTGGGAAGTTGAATCTGgtgagtgtagtacctcacatcagagtgtaataaaagatgttgacaatcta Alignment from CESAR tCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG aggctcttgtgacctgccatatcaaattcaatcccttgctccctttacagtCGTTCACACTCAGTTTTTTCTGTTATGATACACATGAAAGAAACAACAATCGATGGAGAACAGCTTGTTAAAATTGGGAAGTTGAATCTGgtgagtgtagtacctcacatcagagtgtaataaaagatgttgacaatcta Alignment from Spaln_aa2Genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG aggctcttgtgacctgccatatcaaattcaatcccttgctccctttacagTCGTTCACACTCAGTTTTTTCTGTTATGATACACATGAAAGAAACAACAATCGATGGAGAACAGCTTGTTAAAATTGGGAAGTTGAATCTGgtgagtgtagtacctcacatcagagtgtaataaaagatgttgacaatcta Alignment from Spaln_nt2Genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG aggctcttgtgacctgccatatcaaattcaatcccttgctccctttacagTCGTTCACACTCAGTTTTTTCTGTTATGATACACATGAAAGAAACAACAATCGATGGAGAACAGCTTGTTAAAATTGGGAAGTTGAATCTGgtgagtgtagtacctcacatcagagtgtaataaaagatgttgacaatcta Alignment from Pairagon TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG aggctcttgtgacctgccatatcaaattcaatcccttgctccctttacagTCGTTCACACTCAGTTTTTTCTGTTATGATACACATGAAAGAAACAACAATCGATGGAGAACAGCTTGTTAAAATTGGGAAGTTGAATCTGgtgagtgtagtacctcacatcagagtgtaataaaagatgttgacaatcta Alignment from Exonerate_protein2genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG aggctcttgtgacctgccatatcaaattcaatcccttgctccctttacagTCGTTCACACTCAGTTTTTTCTGTTATGATACACATGAAAGAAACAACAATCGATGGAGAACAGCTTGTTAAAATTGGGAAGTTGAATCTGgtgagtgtagtacctcacatcagagtgtaataaaagatgttgacaatcta Alignment from Exonerate_coding2genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG aggctcttgtgacctgccatatcaaattcaatcccttgctccctttacagTCGTTCACACTCAGTTTTTTCTGTTATGATACACATGAAAGAAACAACAATCGATGGAGAACAGCTTGTTAAAATTGGGAAGTTGAATCTGgtgagtgtagtacctcacatcagagtgtaataaaagatgttgacaatcta Alignment from GeneWise TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG aggctcttgtgacctgccatatcaaattcaatcccttgctccctttacagTCGTTCACACTCAGTTTTTTCTGTTATGATACACATGAAAGAAACAACAATCGATGGAGAACAGCTTGTTAAAATTGGGAAGTTGAATCTGgtgagtgtagtacctcacatcagagtgtaataaaagatgttgacaatcta #### Kif11_ID7324_14 --> 2 - 0 Original Alignment gtAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gtttaacaaatccaccctaccttacaccaatgtctttttctctcctttaggtAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACGATCACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAGTCATTAGCAGCACAAAGCAAA---ATTCTGCAAGGATTGATTgttagtgatacttttatgtctaccaccttccagcataataatacagtttg Alignment from CESAR gtAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gtttaacaaatccaccctaccttacaccaatgtctttttctctcctttaggtAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACGATCACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAGTCATTAGCAGCACAAAGCAAA---ATTCTGCAAGGATTGATTgttagtgatacttttatgtctaccaccttccagcataataatacagtttg Alignment from Spaln_aa2Genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gtttaacaaatccaccctaccttacaccaatgtctttttctctcctttagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACGATCACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAGTCATTAGCAGCACAAAGCAAA---ATTCTGCAAGGATTGATTgttagtgatacttttatgtctaccaccttccagcataataatacagtttg Alignment from Spaln_nt2Genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gtttaacaaatccaccctaccttacaccaatgtctttttctctcctttagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACGATCACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAGTCATTAGCAGCACAAAGCAAAA---TTCTGCAAGGATTGATTgttagtgatacttttatgtctaccaccttccagcataataatacagtttg Alignment from Pairagon GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gtttaacaaatccaccctaccttacaccaatgtctttttctctcctttagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACGATCACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAGTCATTAGCAGCACAAAGCAAAA---TTCTGCAAGGATTGATTgttagtgatacttttatgtctaccaccttccagcataataatacagtttg Alignment from Exonerate_protein2genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gtttaacaaatccaccctaccttacaccaatgtctttttctctcctttagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACGATCACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAGTCATTAGCAGCACAAAGCAAA---ATTCTGCAAGGATTGATTgttagtgatacttttatgtctaccaccttccagcataataatacagtttg Alignment from Exonerate_coding2genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gtttaacaaatccaccctaccttacaccaatgtctttttctctcctttagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACGATCACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAGTCATTAGCAGCACAAAGCAAA---ATTCTGCAAGGATTGATTgttagtgatacttttatgtctaccaccttccagcataataatacagtttg Alignment from GeneWise GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gtttaacaaatccaccctaccttacaccaatgtctttttctctcctttagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACGATCACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAGTCATTAGCAGCACAAAGCAAA---ATTCTGCAAGGATTGATTgttagtgatacttttatgtctaccaccttccagcataataatacagtttg #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTA---AGTGAGAAGAGCTCTGGACAGGTGGCA---------CAGAAATTCAGTTTTTCTAAG ctggctataaacacagtgtctcttgagattgtccccaattatcattccag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGATCCACAGAGTATGCTAGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTA---CGCCATGTACAGGAATTTAGCTTTTCTAAAgtgagcgtaagtatggtggattgaccacactgaatgctctatcaagagga Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTA---AGTGAGAAGAGCTCTGGACAGGTG------GCACAGAAATTCAGTTTTTCTAAG ctggctataaacacagtgtctcttgagattgtccccaattatcattccag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGATCCACAGAGTATGCTAGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACGCCATGTACAGGAATTTAGCTTTTCTAAAgtgagcgtaagtatggtggattgaccacactgaatgctctatcaagagga Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC---TTAAGTGAGAAGAGCTCTGGACAGGTG------GCACAGAAATTCAGTTTTTCTAAG ctggctataaacacagtgtctcttgagattgtccccaattatcattccag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGATCCACAGAGTATGCTAGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACGCCATGTACAGGAATTTAGCTTTTCTAAAgtgagcgtaagtatggtggattgaccacactgaatgctctatcaagagga Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTA---AGTGAGAAGAGCTCTGGACAGGTG------GCACAGAAATTCAGTTTTTCTAAG ctggctataaacacagtgtctcttgagattgtccccaattatcattccag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGATCCACAGAGTATGCTAGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACGCCATGTACAGGAATTTAGCTTTTCTAAAgtgagcgtaagtatggtggattgaccacactgaatgctctatcaagagga Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC---TTAAGTGAGAAGAGCTCTGGACAGGTG------GCACAGAAATTCAGTTTTTCTAAG ctggctataaacacagtgtctcttgagattgtccccaattatcattccag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGATCCACAGAGTATGCTAGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACGCCATGTACAGGAATTTAGCTTTTCTAAAgtgagcgtaagtatggtggattgaccacactgaatgctctatcaagagga Alignment from Exonerate_protein2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC---TTAAGTGAGAAGAGCTCTGGACAGGTG------GCACAGAAATTCAGTTTTTCTAAG ctggctataaacacagtgtctcttgagattgtccccaattatcattccagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGATCCACAGAGTATGCTAGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACGCCATGTACAGGAATTTAGCTTTTCTAAAgtgagcgtaagtatggtggattgaccacactgaatgctctatcaagagga Alignment from Exonerate_coding2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC---TTAAGTGAGAAGAGCTCTGGACAGGTG------GCACAGAAATTCAGTTTTTCTAAG ctggctataaacacagtgtctcttgagattgtccccaattatcattccagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGATCCACAGAGTATGCTAGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACGCCATGTACAGGAATTTAGCTTTTCTAAAgtgagcgtaagtatggtggattgaccacactgaatgctctatcaagagga Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTA---AGTGAGAAGAGCTCTGGACAGGTG------GCACAGAAATTCAGTTTTTCTAAG ctggctataaacacagtgtctcttgagattgtccccaattatcattccagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGATCCACAGAGTATGCTAGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACGCCATGTACAGGAATTTAGCTTTTCTAAAgtgagcgtaagtatggtggattgaccacactgaatgctctatcaagagga #### Kif20b_ID7003_8 --> 2 - 2 Original Alignment atCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAag ctagatgttaaattatccattgtacacctaatagatttcattcctcctagacCTGCAGTGGGTGCAGGTATCTGAATCTAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGaggtaagttacatcagaaattctaccctaactgatgtagagctaattgccta Alignment from CESAR atCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAag ctagatgttaaattatccattgtacacctaatagatttcattcctcctagacCTGCAGTGGGTGCAGGTATCTGAATCTAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGaggtaagttacatcagaaattctaccctaactgatgtagagctaattgccta Alignment from Spaln_aa2Genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctagatgttaaattatccattgtacacctaatagatttcattcctcctagACCTGCAGTGGGTGCAGGTATCTGAATCTAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgtaagttacatcagaaattctaccctaactgatgtagagctaattgccta Alignment from Spaln_nt2Genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctagatgttaaattatccattgtacacctaatagatttcattcctcctagACCTGCAGTGGGTGCAGGTATCTGAATCTAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgtaagttacatcagaaattctaccctaactgatgtagagctaattgccta Alignment from Pairagon ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctagatgttaaattatccattgtacacctaatagatttcattcctcctagACCTGCAGTGGGTGCAGGTATCTGAATCTAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgtaagttacatcagaaattctaccctaactgatgtagagctaattgccta Alignment from Exonerate_protein2genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctagatgttaaattatccattgtacacctaatagatttcattcctcctagACCTGCAGTGGGTGCAGGTATCTGAATCTAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgtaagttacatcagaaattctaccctaactgatgtagagctaattgccta Alignment from Exonerate_coding2genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctagatgttaaattatccattgtacacctaatagatttcattcctcctagACCTGCAGTGGGTGCAGGTATCTGAATCTAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgtaagttacatcagaaattctaccctaactgatgtagagctaattgccta Alignment from GeneWise ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctagatgttaaattatccattgtacacctaatagatttcattcctcctagACCTGCAGTGGGTGCAGGTATCTGAATCTAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgtaagttacatcagaaattctaccctaactgatgtagagctaattgccta #### Kif20b_ID7004_9 --> 1 - 2 Original Alignment tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga tatttgaatgggagtcctcctaaatttgagtctctctgctgcccacacagtCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCCGAGATACCTCGTGTTACACGAGTTAGTgagtgagtgggtttcaaagctgtgggatgttttggaagaaaagtatctgcag Alignment from CESAR tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga tatttgaatgggagtcctcctaaatttgagtctctctgctgcccacacagtCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCCGAGATACCTCGTGTTACACGAGTTAGTgagtgagtgggtttcaaagctgtgggatgttttggaagaaaagtatctgcag Alignment from Spaln_aa2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatgggagtcctcctaaatttgagtctctctgctgcccacacagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCCGAGATACCTCGTGTTACACGAGTTAGTGAgtgagtgggtttcaaagctgtgggatgttttggaagaaaagtatctgcag Alignment from Spaln_nt2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatgggagtcctcctaaatttgagtctctctgctgcccacacagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCCGAGATACCTCGTGTTACACGAGTTAGTGAgtgagtgggtttcaaagctgtgggatgttttggaagaaaagtatctgcag Alignment from Pairagon TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatgggagtcctcctaaatttgagtctctctgctgcccacacagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCCGAGATACCTCGTGTTACACGAGTTAGTGAgtgagtgggtttcaaagctgtgggatgttttggaagaaaagtatctgcag Alignment from Exonerate_protein2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatgggagtcctcctaaatttgagtctctctgctgcccacacagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCCGAGATACCTCGTGTTACACGAGTTAGTGAgtgagtgggtttcaaagctgtgggatgttttggaagaaaagtatctgcag Alignment from Exonerate_coding2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatgggagtcctcctaaatttgagtctctctgctgcccacacagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCCGAGATACCTCGTGTTACACGAGTTAGTGAgtgagtgggtttcaaagctgtgggatgttttggaagaaaagtatctgcag Alignment from GeneWise TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatgggagtcctcctaaatttgagtctctctgctgcccacacagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCCGAGATACCTCGTGTTACACGAGTTAGTGAgtgagtgggtttcaaagctgtgggatgttttggaagaaaagtatctgcag #### Kif20b_ID7007_12 --> 0 - 0 Original Alignment GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCT---TTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG gaatggtttgcagtaactttacacaaaactctttcattcctttccttcagGTTTATGTACCTGATACATTAAGCCCTTCTCAAAAGAAGTCCTCCTTTAAATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAACAAGATACTAAATGTAAAAAGAAAGACTGCTTCATGGGAGAACAGCCTAAAGCATGTACATGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAAGAAAGTCAAAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTGCTTGCTATAAAAAAAACAGGgtgagttcttgtgccttttgaattttctactggctttaaggagttatgat Alignment from CESAR GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAA---TCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG gaatggtttgcagtaactttacacaaaactctttcattcctttccttcagGTTTATGTACCTGATACATTAAGCCCTTCTCAAAAGAAGTCCTCCTTTAAATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAACAAGATACTAAATGTAAAAAGAAAGACTGCTTCATGGGAGAACAGCCTAAAGCATGTACATGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAAGAAAGTCAAAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTGCTTGCTATAAAAAAAACAGGgtgagttcttgtgccttttgaattttctactggctttaaggagttatgat Alignment from Spaln_aa2Genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAA---TCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG gaatggtttgcagtaactttacacaaaactctttcattcctttccttcagGTTTATGTACCTGATACATTAAGCCCTTCTCAAAAGAAGTCCTCCTTTAAATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAACAAGATACTAAATGTAAAAAGAAAGACTGCTTCATGGGAGAACAGCCTAAAGCATGTACATGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAAGAAAGTCAAAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTGCTTGCTATAAAAAAAACAGGgtgagttcttgtgccttttgaattttctactggctttaaggagttatgat Alignment from Spaln_nt2Genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTT---TTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG gaatggtttgcagtaactttacacaaaactctttcattcctttccttcagGTTTATGTACCTGATACATTAAGCCCTTCTCAAAAGAAGTCCTCCTTTAAATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAACAAGATACTAAATGTAAAAAGAAAGACTGCTTCATGGGAGAACAGCCTAAAGCATGTACATGAAAATGAAGA---AGTTGAAGATTTAGAGGAGAATGAAGAAAGTCAAAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTGCTTGCTATAAAAAAAACAGGgtgagttcttgtgccttttgaattttctactggctttaaggagttatgat Alignment from Pairagon GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAA---TCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG gaatggtttgcagtaactttacacaaaactctttcattcctttccttcagGTTTATGTACCTGATACATTAAGCCCTTCTCAAAAGAAGTCCTCCTTTAAATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAACAAGATACTAAATGTAAAAAGAAAGACTGCTTCATGGGAGAACAGCCTAAAGCATGTACATGAAAATGAAGA---AGTTGAAGATTTAGAGGAGAATGAAGAAAGTCAAAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTGCTTGCTATAAAAAAAACAGGgtgagttcttgtgccttttgaattttctactggctttaaggagttatgat Alignment from Exonerate_protein2genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAA---TCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG gaatggtttgcagtaactttacacaaaactctttcattcctttccttcagGTTTATGTACCTGATACATTAAGCCCTTCTCAAAAGAAGTCCTCCTTTAAATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAACAAGATACTAAATGTAAAAAGAAAGACTGCTTCATGGGAGAACAGCCTAAAGCATGTACATGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAAGAAAGTCAAAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTGCTTGCTATAAAAAAAACAGGgtgagttcttgtgccttttgaattttctactggctttaaggagttatgat Alignment from Exonerate_coding2genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAA---TCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG gaatggtttgcagtaactttacacaaaactctttcattcctttccttcagGTTTATGTACCTGATACATTAAGCCCTTCTCAAAAGAAGTCCTCCTTTAAATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAACAAGATACTAAATGTAAAAAGAAAGACTGCTTCATGGGAGAACAGCCTAAAGCATGTACATGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAAGAAAGTCAAAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTGCTTGCTATAAAAAAAACAGGgtgagttcttgtgccttttgaattttctactggctttaaggagttatgat Alignment from GeneWise ---TATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCT---TTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG gaatggtttgcagtaactttacacaaaactctttcattcctttccttcagGTTTATGTACCTGATACATTAAGCCCTTCTCAAAAGAAGTCCTCCTTTAAATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAACAAGATACTAAATGTAAAAAGAAAGACTGCTTCATGGGAGAACAGCCTAAAGCATGTACATGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAAGAAAGTCAAAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTGCTTGCTATAAAAAAAACAGGgtgagttcttgtgccttttgaattttctactggctttaaggagttatgat #### Kif20b_ID7008_13 --> 0 - 2 Original Alignment GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATaagtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from CESAR GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATaagtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from Spaln_aa2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from Spaln_nt2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from Pairagon GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from Exonerate_protein2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from Exonerate_coding2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc Alignment from GeneWise GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA tacaaggcttggttataaagtgtaagcatggttttcatgttctctcttagGAGCTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAAAATCAAGAAAAATTGTCATTGGAGCTTAAGATCCGGGAAGATGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGACTATAAgtaagctactgctaagttcttgtcatgacaggacaaactgtgtaaacttc #### Kif20b_ID7009_14 --> 1 - 0 Original Alignment gGAGACACTTCTT---CATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGT---GACATAGAACTTGAAACTGAA tggtgatttcgactaagtcctctattagcctcagcctccttcttccccagaGAAACAGTTATTATACATCAGCAGGAAATATTGGGAGAAAATACTGAACGGTGTGTGTGTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGTTAGACACTGGAgtacacattacactgacatgcaccacaccctctgatgtggcccccttttt Alignment from CESAR gGAGACACTTCTT---CATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATT---TGTGACATAGAACTTGAAACTGAA tggtgatttcgactaagtcctctattagcctcagcctccttcttccccagaGAAACAGTTATTATACATCAGCAGGAAATATTGGGAGAAAATACTGAACGGTGTGTGTGTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGTTAGACACTGGAgtacacattacactgacatgcaccacaccctctgatgtggcccccttttt Alignment from Spaln_aa2Genome GGAGACA---CTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATT---TGTGACATAGAACTTGAAACTGAA tggtgatttcgactaagtcctctattagcctcagcctccttcttccccagAGAAACAGTTATTATACATCAGCAGGAAATATTGGGAGAAAATACTGAACGGTGTGTGTGTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGTTAGACACTGGAgtacacattacactgacatgcaccacaccctctgatgtggcccccttttt Alignment from Spaln_nt2Genome GGAGACACTTCTT---CATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTG---TGACATAGAACTTGAAACTGAA tggtgatttcgactaagtcctctattagcctcagcctccttcttccccagAGAAACAGTTATTATACATCAGCAGGAAATATTGGGAGAAAATACTGAACGGTGTGTGTGTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGTTAGACACTGGAgtacacattacactgacatgcaccacaccctctgatgtggcccccttttt Alignment from Pairagon GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATT---TGTGACATAGAACTTGAAACTGAA tggtgatttcgactaagtcctctattagcctcagcctccttcttccccagagaaacagttattatacatcagcag----------------------GAAATATTGGGAGAAAATACTGAACGGTGTGTGTGTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGTTAGACACTGGAgtacacattacactgacatgcaccacaccctctgatgtggcccccttttt Alignment from Exonerate_protein2genome GGAGACA---CTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGA---ATTTGTGACATAGAACTTGAAACTGAA tggtgatttcgactaagtcctctattagcctcagcctccttcttccccagAGAAACAGTTATTATACATCAGCAGGAAATATTGGGAGAAAATACTGAACGGTGTGTGTGTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGTTAGACACTGGAgtacacattacactgacatgcaccacaccctctgatgtggcccccttttt Alignment from Exonerate_coding2genome GGAGACA---CTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGA---ATTTGTGACATAGAACTTGAAACTGAA tggtgatttcgactaagtcctctattagcctcagcctccttcttccccagAGAAACAGTTATTATACATCAGCAGGAAATATTGGGAGAAAATACTGAACGGTGTGTGTGTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGTTAGACACTGGAgtacacattacactgacatgcaccacaccctctgatgtggcccccttttt Alignment from GeneWise GGAGACA---CTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGA---ATTTGTGACATAGAACTTGAAACTGAA tggtgatttcgactaagtcctctattagcctcagcctccttcttccccagAGAAACAGTTATTATACATCAGCAGGAAATATTGGGAGAAAATACTGAACGGTGTGTGTGTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGACCCAACAAATAAAACTTGCTGTGATATAGAGTTAGACACTGGAgtacacattacactgacatgcaccacaccctctgatgtggcccccttttt #### Kif20b_ID7010_15 --> 0 - 1 Original Alignment GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCa ataatccctgcttgcctagacaatgttactgtccttcttggtctccctagGAAGCTCATAACTTTGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGACGATGTCACTGACATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAAGAAGCTATTGTATGTTTGCAATTGAAATTCAATCAGGTTAAAGCGGAATTGGCTGAAACCAAAGAGGAATTAATTAGAGTCCAAGAAGAACTAAAGAACAGAGAAAGCagtgagtgcaggtcttttatgataacctggaaagtactactatcaagttgt Alignment from CESAR GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCa ataatccctgcttgcctagacaatgttactgtccttcttggtctccctagGAAGCTCATAACTTTGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGACGATGTCACTGACATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAAGAAGCTATTGTATGTTTGCAATTGAAATTCAATCAGGTTAAAGCGGAATTGGCTGAAACCAAAGAGGAATTAATTAGAGTCCAAGAAGAACTAAAGAACAGAGAAAGCagtgagtgcaggtcttttatgataacctggaaagtactactatcaagttgt Alignment from Spaln_aa2Genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA ataatccctgcttgcctagacaatgttactgtccttcttggtctccctagGAAGCTCATAACTTTGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGACGATGTCACTGACATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAAGAAGCTATTGTATGTTTGCAATTGAAATTCAATCAGGTTAAAGCGGAATTGGCTGAAACCAAAGAGGAATTAATTAGAGTCCAAGAAGAACTAAAGAACAGAGAAAGCAgtgagtgcaggtcttttatgataacctggaaagtactactatcaagttgt Alignment from Spaln_nt2Genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA ataatccctgcttgcctagacaatgttactgtccttcttggtctccctagGAAGCTCATAACTTTGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGACGATGTCACTGACATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAAGAAGCTATTGTATGTTTGCAATTGAAATTCAATCAGGTTAAAGCGGAATTGGCTGAAACCAAAGAGGAATTAATTAGAGTCCAAGAAGAACTAAAGAACAGAGAAAGCAgtgagtgcaggtcttttatgataacctggaaagtactactatcaagttgt Alignment from Pairagon GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA ataatccctgcttgcctagacaatgttactgtccttcttggtctccctagGAAGCTCATAACTTTGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGACGATGTCACTGACATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAAGAAGCTATTGTATGTTTGCAATTGAAATTCAATCAGGTTAAAGCGGAATTGGCTGAAACCAAAGAGGAATTAATTAGAGTCCAAGAAGAACTAAAGAACAGAGAAAGCAgtgagtgcaggtcttttatgataacctggaaagtactactatcaagttgt Alignment from Exonerate_protein2genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA ataatccctgcttgcctagacaatgttactgtccttcttggtctccctagGAAGCTCATAACTTTGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGACGATGTCACTGACATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAAGAAGCTATTGTATGTTTGCAATTGAAATTCAATCAGGTTAAAGCGGAATTGGCTGAAACCAAAGAGGAATTAATTAGAGTCCAAGAAGAACTAAAGAACAGAGAAAGCAgtgagtgcaggtcttttatgataacctggaaagtactactatcaagttgt Alignment from Exonerate_coding2genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCAACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ataatccctgcttgcctagacaatgttactgtccttcttggtctccctagGAAGCTCATAACTTTGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGACGATGTCACTGACATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAAGAAGCTATTGTATGTTTGCAATTGAAATTCAATCAGGTTAAAGCGGAATTGGCTGAAACCAAAGAGGAATTAATTAGAGTCCAAGAAGAACTAAAGAACAGAGAAAGC---AGTGAGTGCAGGTCTTTTATGATAACCTGGAAAgtactactatcaagttgt Alignment from GeneWise GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCAACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ataatccctgcttgcctagacaatgttactgtccttcttggtctccctagGAAGCTCATAACTTTGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGACGATGTCACTGACATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAAGAAGCTATTGTATGTTTGCAATTGAAATTCAATCAGGTTAAAGCGGAATTGGCTGAAACCAAAGAGGAATTAATTAGAGTCCAAGAAGAACTAAAGAACAGAGAAAGC---AGTGAGTGCAGGTCTTTTATGATAACCTGGAAAgtactactatcaagttgt #### Kif20b_ID7011_16 --> 2 - 0 Original Alignment acTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ggagttccagggattcatttttaagtactgcatgctcttgttttgtgtagacCCCTTAGTCCAGCCACTTAAAACATCAAGTAAAgtgagctcacattggctggaggctagtacaatcaataggtgtgacaaaat Alignment from CESAR acTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ggagttccagggattcatttttaagtactgcatgctcttgttttgtgtagacCCCTTAGTCCAGCCACTTAAAACATCAAGTAAAgtgagctcacattggctggaggctagtacaatcaataggtgtgacaaaat Alignment from Spaln_aa2Genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ggagttccagggattcatttttaagtactgcatgctcttgttttgtgtagACCCCTTAGTCCAGCCACTTAAAACATCAAGTAAAgtgagctcacattggctggaggctagtacaatcaataggtgtgacaaaat Alignment from Spaln_nt2Genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ggagttccagggattcatttttaagtactgcatgctcttgttttgtgtagACCCCTTAGTCCAGCCACTTAAAACATCAAGTAAAgtgagctcacattggctggaggctagtacaatcaataggtgtgacaaaat Alignment from Pairagon ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ggagttccagggattcatttttaagtactgcatgctcttgttttgtgtagACCCCTTAGTCCAGCCACTTAAAACATCAAGTAAAgtgagctcacattggctggaggctagtacaatcaataggtgtgacaaaat Alignment from Exonerate_protein2genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ggagttccagggattcatttttaagtactgcatgctcttgttttgtgtagACCCCTTAGTCCAGCCACTTAAAACATCAAGTAAAgtgagctcacattggctggaggctagtacaatcaataggtgtgacaaaat Alignment from Exonerate_coding2genome ggagttccagggattcatttttaagtactgcatgctcttgttttgtgtagaccccttagtccagccacttaaaacatcaagtaaagtgagctcacattggctggaggctagtacaatcaataggtgtgacaaaat Alignment from GeneWise ggagttccagggattcatttttaagtactgcatgctcttgttttgtgtagaccccttagtccagccacttaaaacatcaagtaaagtgagctcacattggctggaggctagtacaatcaataggtgtgacaaaat #### Kif20b_ID7021_26 --> 0 - 0 Original Alignment GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caattaagcaacactcatgtctgcctcttaatgtcattttatttttacagGAAAACCACACCATGAATCCCAGACCTAAATATAATGACTTTGTTGAC---GGTGGAGTTAAAACTGAACCACAGGCAACAAGCCTGGAAATTTCTAGGAACATCGCCGAGgtatggagttggtgtccactcaactatgcacccttctgttgtcaagaaca Alignment from CESAR GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caattaagcaacactcatgtctgcctcttaatgtcattttatttttacagGAAAACCACACCATGAATCCCAGACCTAAATATAATGACTTTGTTGAC---GGTGGAGTTAAAACTGAACCACAGGCAACAAGCCTGGAAATTTCTAGGAACATCGCCGAGgtatggagttggtgtccactcaactatgcacccttctgttgtcaagaaca Alignment from Spaln_aa2Genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caattaagcaacactcatgtctgcctcttaatgtcattttatttttacagGAAAACCACACCATGAATCCCAGACCTAAATATAATGACTTTGTTGAC---GGTGGAGTTAAAACTGAACCACAGGCAACAAGCCTGGAAATTTCTAGGAACATCGCCGAGgtatggagttggtgtccactcaactatgcacccttctgttgtcaagaaca Alignment from Spaln_nt2Genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caattaagcaacactcatgtctgcctcttaatgtcattttatttttacagGAAAACCACACCATGAATCCCAGACCTAAATATAATGACTTTGTTGA---CGGTGGAGTTAAAACTGAACCACAGGCAACAAGCCTGGAAATTTCTAGGAACATCGCCGAGgtatggagttggtgtccactcaactatgcacccttctgttgtcaagaaca Alignment from Pairagon GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caattaagcaacactcatgtctgcctcttaatgtcattttatttttacagGAAAACCACACCATGAATCCCAGACCTAAATATAATGACTTTGTTGA---CGGTGGAGTTAAAACTGAACCACAGGCAACAAGCCTGGAAATTTCTAGGAACATCGCCGAGgtatggagttggtgtccactcaactatgcacccttctgttgtcaagaaca Alignment from Exonerate_protein2genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caattaagcaacactcatgtctgcctcttaatgtcattttatttttacagGAAAACCACACCATGAATCCCAGACCTAAATATAATGACTTTGTTGAC---GGTGGAGTTAAAACTGAACCACAGGCAACAAGCCTGGAAATTTCTAGGAACATCGCCGAGgtatggagttggtgtccactcaactatgcacccttctgttgtcaagaaca Alignment from Exonerate_coding2genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caattaagcaacactcatgtctgcctcttaatgtcattttatttttacagGAAAACCACACCATGAATCCCAGACCTAAATATAATGACTTTGTTGAC---GGTGGAGTTAAAACTGAACCACAGGCAACAAGCCTGGAAATTTCTAGGAACATCGCCGAGgtatggagttggtgtccactcaactatgcacccttctgttgtcaagaaca Alignment from GeneWise GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caattaagcaacactcatgtctgcctcttaatgtcattttatttttacagGAAAACCACACCATGAATCCCAGACCTAAATATAATGACTTTGTTGAC---GGTGGAGTTAAAACTGAACCACAGGCAACAAGCCTGGAAATTTCTAGGAACATCGCCGAGgtatggagttggtgtccactcaactatgcacccttctgttgtcaagaaca #### Kif20b_ID7025_29 --> 0 - 1 Original Alignment GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAg agaaactgtaatcatgtaattattgatcttatgatatatgatttaaacagGTTTCTGTTGGTGCATCATCTAAGAAAACTTACTCCTTACGAAGCCAAGCATCTACAGTTAGTGCGAACATAGCCTCTAAAAAAAGAGAGGGAACATTGCAGAAATTTGGGGACTGTCTGCAACACTCTCCGACAATTCTTCAATCGAAAggtgagtcaacaatcaggtgatcttaccaacaaatgggtctgttttcatca Alignment from CESAR GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAg agaaactgtaatcatgtaattattgatcttatgatatatgatttaaacagGTTTCTGTTGGTGCATCATCTAAGAAAACTTACTCCTTACGAAGCCAAGCATCTACAGTTAGTGCGAACATAGCCTCTAAAAAAAGAGAGGGAACATTGCAGAAATTTGGGGACTGTCTGCAACACTCTCCGACAATTCTTCAATCGAAAggtgagtcaacaatcaggtgatcttaccaacaaatgggtctgttttcatca Alignment from Spaln_aa2Genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG agaaactgtaatcatgtaattattgatcttatgatatatgatttaaacagGTTTCTGTTGGTGCATCATCTAAGAAAACTTACTCCTTACGAAGCCAAGCATCTACAGTTAGTGCGAACATAGCCTCTAAAAAAAGAGAGGGAACATTGCAGAAATTTGGGGACTGTCTGCAACACTCTCCGACAATTCTTCAATCGAAAGgtgagtcaacaatcaggtgatcttaccaacaaatgggtctgttttcatca Alignment from Spaln_nt2Genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG agaaactgtaatcatgtaattattgatcttatgatatatgatttaaacagGTTTCTGTTGGTGCATCATCTAAGAAAACTTACTCCTTACGAAGCCAAGCATCTACAGTTAGTGCGAACATAGCCTCTAAAAAAAGAGAGGGAACATTGCAGAAATTTGGGGACTGTCTGCAACACTCTCCGACAATTCTTCAATCGAAAGgtgagtcaacaatcaggtgatcttaccaacaaatgggtctgttttcatca Alignment from Pairagon AAGGTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG agaaactgtaatcatgtaattattgatcttatgatatatgatttaaacag---GTTTCTGTTGGTGCATCATCTAAGAAAACTTACTCCTTACGAAGCCAAGCATCTACAGTTAGTGCGAACATAGCCTCTAAAAAAAGAGAGGGAACATTGCAGAAATTTGGGGACTGTCTGCAACACTCTCCGACAATTCTTCAATCGAAAGgtgagtcaacaatcaggtgatcttaccaacaaatgggtctgttttcatca Alignment from Exonerate_protein2genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG agaaactgtaatcatgtaattattgatcttatgatatatgatttaaacagGTTTCTGTTGGTGCATCATCTAAGAAAACTTACTCCTTACGAAGCCAAGCATCTACAGTTAGTGCGAACATAGCCTCTAAAAAAAGAGAGGGAACATTGCAGAAATTTGGGGACTGTCTGCAACACTCTCCGACAATTCTTCAATCGAAAGgtgagtcaacaatcaggtgatcttaccaacaaatgggtctgttttcatca Alignment from Exonerate_coding2genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG agaaactgtaatcatgtaattattgatcttatgatatatgatttaaacagGTTTCTGTTGGTGCATCATCTAAGAAAACTTACTCCTTACGAAGCCAAGCATCTACAGTTAGTGCGAACATAGCCTCTAAAAAAAGAGAGGGAACATTGCAGAAATTTGGGGACTGTCTGCAACACTCTCCGACAATTCTTCAATCGAAAGgtgagtcaacaatcaggtgatcttaccaacaaatgggtctgttttcatca Alignment from GeneWise GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG agaaactgtaatcatgtaattattgatcttatgatatatgatttaaacagGTTTCTGTTGGTGCATCATCTAAGAAAACTTACTCCTTACGAAGCCAAGCATCTACAGTTAGTGCGAACATAGCCTCTAAAAAAAGAGAGGGAACATTGCAGAAATTTGGGGACTGTCTGCAACACTCTCCGACAATTCTTCAATCGAAAGgtgagtcaacaatcaggtgatcttaccaacaaatgggtctgttttcatca #### Klc2_ID853_13 --> 0 - 2 Original Alignment GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag agagcataacaaatctcttttgagcctgcccacttcttcttggtacacagGATGGAAGCGGTTCCCTGCAGTGCAGTGGTTCTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTCGTAAGGAAATCGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTaggtaagcgctcacctcctacatccatatcattaatgataacttgcggggcc Alignment from CESAR GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ttcgcataacaaatctcttttgagcctgcccacttcttcttggtacacagGATGGAAGCGGTTCCCTGCAGTGCAGTGGTTCTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTCGTAAGGAAATCGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTaggtaagcgctcacctcctacatccatatcattaatgataacttgcggggcc Alignment from Spaln_aa2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG agagcataacaaatctcttttgagcctgcccacttcttcttggtacacagGATGGAAGCGGTTCCCTGCAGTGCAGTGGTTCTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTCGTAAGGAAATCGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTAGgtaagcgctcacctcctacatccatatcattaatgataacttgcggggcc Alignment from Spaln_nt2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG agagcataacaaatctcttttgagcctgcccacttcttcttggtacacagGATGGAAGCGGTTCCCTGCAGTGCAGTGGTTCTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTCGTAAGGAAATCGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTAGgtaagcgctcacctcctacatccatatcattaatgataacttgcggggcc Alignment from Pairagon GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG agagcataacaaatctcttttgagcctgcccacttcttcttggtacacagGATGGAAGCGGTTCCCTGCAGTGCAGTGGTTCTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTCGTAAGGAAATCGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTAGgtaagcgctcacctcctacatccatatcattaatgataacttgcggggcc Alignment from Exonerate_protein2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG agagcataacaaatctcttttgagcctgcccacttcttcttggtacacagGATGGAAGCGGTTCCCTGCAGTGCAGTGGTTCTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTCGTAAGGAAATCGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTAGgtaagcgctcacctcctacatccatatcattaatgataacttgcggggcc Alignment from Exonerate_coding2genome agagcataacaaatctcttttgagcctgcccacttcttcttggtacacaggatggaagcggttccctgcagtgcagtggttcttttgggaaactccgagatgctctaagacgcagcagtgaaatgctcgtaaggaaatcgcaggggggtgggccacaggagccctctaattctaggtaagcgctcacctcctacatccatatcattaatgataacttgcggggcc Alignment from GeneWise GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG agagcataacaaatctcttttgagcctgcccacttcttcttggtacacagGATGGAAGCGGTTCCCTGCAGTGCAGTGGTTCTTTTGGGAAACTCCGAGATGCTCTAAGACGCAGCAGTGAAATGCTCGTAAGGAAATCGCAGGGGGGTGGGCCACAGGAGCCCTCTAATTCTAGgtaagcgctcacctcctacatccatatcattaatgataacttgcggggcc #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTggtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTggtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tcattacaagccaatccaaacactgatttgtgtgttgttttttcttatagCTCTGTGTAATCCTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCTCGGGATTGCCTCAAGACATGTCTCTTCCAGAGGTGGCAGCGAATGGTTGCGCCTCCTGgtaaggttcccttccctctaattaagtgaggtagttctgctacagtcaag #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tttgaggaaatcaccaaagcaagggtagctgatttttttctgtgttttagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAACACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCACgtagtatgatcccagccccacctgatctaagggctttggagtccacatct #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACagtgagttggttctgggtgagatgctttctctctttagaatcttgtctttc Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACagtgagttggttctgggtgagatgctttctctctttttccatgtttgtctc Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttagaatcttgtctttc Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttagaatcttgtctttc Alignment from Pairagon ------------------------------------------------AGGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA AGGATGAGAGGTTGATGGGGGTGTGTCTCGTATGATTTTTCATATTAAAGGAGTGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttagaatcttgtctttc Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttagaatcttgtctttc Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAgtgagttggttctgggtgagatgctttctctctttagaatcttgtctttc Alignment from GeneWise GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATACC------------------------------------------------ aggatgagaggttgatgggggtgtgtctcgtatgatttttcatattaaagGAGTGTGATAATCTTTGGTGGGATGCTTTCACAACTGAGTTCTTTGAGGATGATACCATGCTCACTTTAAACTTTTGTTTGAAAGATGGGCCAAACAGGTACAGTGAGTTGGTTCTGGGTGAGATGCTTTCTCTCTTTAGAATCTTGTCTTTC #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcaggAGGCACAGTCCATATGGTAATCAGACTGATTATAGGATATTTGAGCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtcttgatgcagttgcctt Alignment from CESAR gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcaggAGGCACAGTCCATATGGTAATCAGACTGATTATAGGATATTTGAGCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtctcgtatgatttttcat Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGATATTTGAGCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtcttgatgcagttgcctt Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGATATTTGAGCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtcttgatgcagttgcctt Alignment from Pairagon GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAG---------------------------------------------------- ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGATATTTGAGCTAAACAAGCGGCGTCAGAATTGGACAGAAGTAGAACAGGATGAGAGGTTGATGGGGGTGTGTCTTGATGCAGTTGCCTT Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGATATTTGAGCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtcttgatgcagttgcctt Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGATATTTGAGCTAAACAAGCGGCGTCAGAATTGGACAGAAgtagaacaggatgagaggttgatgggggtgtgtcttgatgcagttgcctt Alignment from GeneWise GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG-------------------------------------------------- ttggctacatatgtccacacacctatttagggctgtttcttcccctgcagGAGGCACAGTCCATATGGTAATCAGACTGATTATAGGATATTTGAGCTAAACAAGCGGCGTCAGAATTGGACAGAAGTAGAACAGGATGAGAGGTTGATGGGGGTGTGTCTTGATGCAGTTGCCTT #### Lgi1_ID7580_5 --> 1 - 2 Original Alignment gAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATgt caagggaagaagaggattaggggcaagtagcccatacccccttgtttcaggAGTCTTTCTAATAACAATCTCCAGACACTCCCGAAAGACATTTTCAAAGGCCTGGATTTCTTAACAAATgtgtaagcatgaaaaccagagtatcaattacagttacaccgaactcttaagg Alignment from CESAR gAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATgt caagggaagaagaggattaggggcaagtagcccatacccccttgtttcaggAGTCTTTCTAATAACAATCTCCAGACACTCCCGAAAGACATTTTCAAAGGCCTGGATTTCTTAACAAATgtgtaagcatgaaaaccagagtatcaattacagttacaccgaactcttaagg Alignment from Spaln_aa2Genome GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT caagggaagaagaggattaggggcaagtagcccatacccccttgtttcagGAGTCTTTCTAATAACAATCTCCAGACACTCCCGAAAGACATTTTCAAAGGCCTGGATTTCTTAACAAATGTgtaagcatgaaaaccagagtatcaattacagttacaccgaactcttaagg Alignment from Spaln_nt2Genome GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT caagggaagaagaggattaggggcaagtagcccatacccccttgtttcagGAGTCTTTCTAATAACAATCTCCAGACACTCCCGAAAGACATTTTCAAAGGCCTGGATTTCTTAACAAATGTgtaagcatgaaaaccagagtatcaattacagttacaccgaactcttaagg Alignment from Pairagon GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT caagggaagaagaggattaggggcaagtagcccatacccccttgtttcagGAGTCTTTCTAATAACAATCTCCAGACACTCCCGAAAGACATTTTCAAAGGCCTGGATTTCTTAACAAATGTgtaagcatgaaaaccagagtatcaattacagttacaccgaactcttaagg Alignment from Exonerate_protein2genome GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT caagggaagaagaggattaggggcaagtagcccatacccccttgtttcagGAGTCTTTCTAATAACAATCTCCAGACACTCCCGAAAGACATTTTCAAAGGCCTGGATTTCTTAACAAATGTgtaagcatgaaaaccagagtatcaattacagttacaccgaactcttaagg Alignment from Exonerate_coding2genome GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT caagggaagaagaggattaggggcaagtagcccatacccccttgtttcagGAGTCTTTCTAATAACAATCTCCAGACACTCCCGAAAGACATTTTCAAAGGCCTGGATTTCTTAACAAATGTgtaagcatgaaaaccagagtatcaattacagttacaccgaactcttaagg Alignment from GeneWise GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT caagggaagaagaggattaggggcaagtagcccatacccccttgtttcagGAGTCTTTCTAATAACAATCTCCAGACACTCCCGAAAGACATTTTCAAAGGCCTGGATTTCTTAACAAATGTgtaagcatgaaaaccagagtatcaattacagttacaccgaactcttaagg #### Lgi1_ID7582_6 --> 1 - 1 Original Alignment gGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAg agctatacatgtcttgaatacttgttactgcccctcctctcaccctgtagtGACTTAAGAGGCAATGCATTTACATGCGATTGTATGTTGAAGTGGTTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACTggtggcttaccttatgttctagtgaatgaccaatgccattctacatggcac Alignment from CESAR gGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAg agctatacatgtcttgaatacttgttactgcccctcctctcaccctgtagtGACTTAAGAGGCAATGCATTTACATGCGATTGTATGTTGAAGTGGTTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACTggtggcttaccttatgttctagtgaatgaccaatgccattctacatggcac Alignment from Spaln_aa2Genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG agctatacatgtcttgaatacttgttactgcccctcctctcaccctgtagTGACTTAAGAGGCAATGCATTTACATGCGATTGTATGTTGAAGTGGTTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACTGgtggcttaccttatgttctagtgaatgaccaatgccattctacatggcac Alignment from Spaln_nt2Genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG agctatacatgtcttgaatacttgttactgcccctcctctcaccctgtagTGACTTAAGAGGCAATGCATTTACATGCGATTGTATGTTGAAGTGGTTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACTGgtggcttaccttatgttctagtgaatgaccaatgccattctacatggcac Alignment from Pairagon GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG agctatacatgtcttgaatacttgttactgcccctcctctcaccctgtagTGACTTAAGAGGCAATGCATTTACATGCGATTGTATGTTGAAGTGGTTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACTGgtggcttaccttatgttctagtgaatgaccaatgccattctacatggcac Alignment from Exonerate_protein2genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG agctatacatgtcttgaatacttgttactgcccctcctctcaccctgtagTGACTTAAGAGGCAATGCATTTACATGCGATTGTATGTTGAAGTGGTTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACTGgtggcttaccttatgttctagtgaatgaccaatgccattctacatggcac Alignment from Exonerate_coding2genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG agctatacatgtcttgaatacttgttactgcccctcctctcaccctgtagTGACTTAAGAGGCAATGCATTTACATGCGATTGTATGTTGAAGTGGTTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACTGgtggcttaccttatgttctagtgaatgaccaatgccattctacatggcac Alignment from GeneWise GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG agctatacatgtcttgaatacttgttactgcccctcctctcaccctgtagTGACTTAAGAGGCAATGCATTTACATGCGATTGTATGTTGAAGTGGTTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACTGgtggcttaccttatgttctagtgaatgaccaatgccattctacatggcac #### Lgi1_ID7583_7 --> 2 - 1 Original Alignment aaTTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAg catgcagaggcgggtgtattaaattgttgttacattctgttattctttagaaTTTGCGAAGTCACAGGACTTACCTTACCAATTGCTCTCAATAGACACTTTCGCATACTTGAATGATGTGTATGTTGTCATTGCACAGCCCTTTGCTGGAATC---ACCTTCCTGGATTGGGATCATGTGGAAAAAACTTTCTGGAACTATGATAATGTTACAggtaagcaggtgcaggttatggctggacggacccaacaggaatgagcaggc Alignment from CESAR aaTTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAg catgcagaggcgggtgtattaaattgttgttacattctgttattctttagaaTTTGCGAAGTCACAGGACTTACCTTACCAATTGCTCTCAATAGACACTTTCGCATACTTGAATGATGTGTATGTTGTCATTGCACAGCCCTTTGCTGGA---ATCACCTTCCTGGATTGGGATCATGTGGAAAAAACTTTCTGGAACTATGATAATGTTACAggtaagcaggtgcaggttatggctggacggacccaacaggaatgagcaggc Alignment from Spaln_aa2Genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG catgcagaggcgggtgtattaaattgttgttacattctgttattctttagAATTTGCGAAGTCACAGGACTTACCTTACCAATTGCTCTCAATAGACACTTTCGCATACTTGAATGATGTGTATGTTGTCATTGCACAGCCCTTTGCTGGA---ATCACCTTCCTGGATTGGGATCATGTGGAAAAAACTTTCTGGAACTATGATAATGTTACAGgtaagcaggtgcaggttatggctggacggacccaacaggaatgagcaggc Alignment from Spaln_nt2Genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG catgcagaggcgggtgtattaaattgttgttacattctgttattctttagAATTTGCGAAGTCACAGGACTTACCTTACCAATTGCTCTCAATAGACACTTTCGCATACTTGAATGATGTGTATGTTGTCATTGCACAGCCCTTTGCTGGAA---TCACCTTCCTGGATTGGGATCATGTGGAAAAAACTTTCTGGAACTATGATAATGTTACAGgtaagcaggtgcaggttatggctggacggacccaacaggaatgagcaggc Alignment from Pairagon AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG catgcagaggcgggtgtattaaattgttgttacattctgttattctttagAATTTGCGAAGTCACAGGACTTACCTTACCAATTGCTCTCAATAGACACTTTCGCATACTTGAATGATGTGTATGTTGTCATTGCACAGCCCTTTGCTGGAA---TCACCTTCCTGGATTGGGATCATGTGGAAAAAACTTTCTGGAACTATGATAATGTTACAGgtaagcaggtgcaggttatggctggacggacccaacaggaatgagcaggc Alignment from Exonerate_protein2genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG catgcagaggcgggtgtattaaattgttgttacattctgttattctttagAATTTGCGAAGTCACAGGACTTACCTTACCAATTGCTCTCAATAGACACTTTCGCATACTTGAATGATGTGTATGTTGTCATTGCACAGCCCTTTGCTGGA---ATCACCTTCCTGGATTGGGATCATGTGGAAAAAACTTTCTGGAACTATGATAATGTTACAGgtaagcaggtgcaggttatggctggacggacccaacaggaatgagcaggc Alignment from Exonerate_coding2genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG catgcagaggcgggtgtattaaattgttgttacattctgttattctttagAATTTGCGAAGTCACAGGACTTACCTTACCAATTGCTCTCAATAGACACTTTCGCATACTTGAATGATGTGTATGTTGTCATTGCACAGCCCTTTGCTGGA---ATCACCTTCCTGGATTGGGATCATGTGGAAAAAACTTTCTGGAACTATGATAATGTTACAGgtaagcaggtgcaggttatggctggacggacccaacaggaatgagcaggc Alignment from GeneWise AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG catgcagaggcgggtgtattaaattgttgttacattctgttattctttagAATTTGCGAAGTCACAGGACTTACCTTACCAATTGCTCTCAATAGACACTTTCGCATACTTGAATGATGTGTATGTTGTCATTGCACAGCCCTTTGCTGGA---ATCACCTTCCTGGATTGGGATCATGTGGAAAAAACTTTCTGGAACTATGATAATGTTACAGgtaagcaggtgcaggttatggctggacggacccaacaggaatgagcaggc #### Lipa_ID6935_8 --> 0 - 0 Original Alignment GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG ataaaattcactgatactggtcactcttcctggtgtttctcttcctgcagGTTTTTAAATACCGTAAGCTACAAGCTTTTGACTGGGGCAGCAGTGAAAAGAATTATTCTCATTACAACCAGgttagtgtattacaaccaggtaacagtcaccaagcatgtgagcataccca Alignment from CESAR GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG ataaaattcactgatactggtcactcttcctggtgtttctcttcctgcagGTTTTTAAATACCGTAAGCTACAAGCTTTTGACTGGGGCAGCAGTGAAAAGAATTATTCTCATTACAACCAGgttagtgtattacaaccaggtaacagtcaccaagcatgtgagcataccca Alignment from Spaln_aa2Genome GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG ataaaattcactgatactggtcactcttcctggtgtttctcttcctgcagGTTTTTAAATACCGTAAGCTACAAGCTTTTGACTGGGGCAGCAGTGAAAAGAATTATTCTCATTACAACCAGgttagtgtattacaaccaggtaacagtcaccaagcatgtgagcataccca Alignment from Spaln_nt2Genome GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG ataaaattcactgatactggtcactcttcctggtgtttctcttcctgcagGTTTTTAAATACCGTAAGCTACAAGCTTTTGACTGGGGCAGCAGTGAAAAGAATTATTCTCATTACAACCAGgttagtgtattacaaccaggtaacagtcaccaagcatgtgagcataccca Alignment from Pairagon GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG ataaaattcactgatactggtcactcttcctggtgtttctcttcctgcagGTTTTTAAATACCGTAAGCTACAAGCTTTTGACTGGGGCAGCAGTGAAAAGAATTATTCTCATTACAACCAGgttagtgtattacaaccaggtaacagtcaccaagcatgtgagcataccca Alignment from Exonerate_protein2genome GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG ataaaattcactgatactggtcactcttcctggtgtttctcttcctgcagGTTTTTAAATACCGTAAGCTACAAGCTTTTGACTGGGGCAGCAGTGAAAAGAATTATTCTCATTACAACCAGgttagtgtattacaaccaggtaacagtcaccaagcatgtgagcataccca Alignment from Exonerate_coding2genome GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG ataaaattcactgatactggtcactcttcctggtgtttctcttcctgcagGTTTTTAAATACCGTAAGCTACAAGCTTTTGACTGGGGCAGCAGTGAAAAGAATTATTCTCATTACAACCAGgttagtgtattacaaccaggtaacagtcaccaagcatgtgagcataccca Alignment from GeneWise GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG ataaaattcactgatactggtcactcttcctggtgtttctcttcctgcagGTTTTTAAATACCGTAAGCTACAAGCTTTTGACTGGGGCAGCAGTGAAAAGAATTATTCTCATTACAACCAGgttagtgtattacaaccaggtaacagtcaccaagcatgtgagcataccca #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ggtagggatggctcaagctaaggtcaatagcttgccttccttgtgtgcaggtTTCATAGCTTTTTCACAAATGCCTGAGTTAGCTAAAAAGATCAAAATGTTTTTAGCACTGACCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCGTTATTACAGTCAGGCCACTTGCCCGATCCATTGCTCAAAgtgagtgagttgatattttaagcacctgattctcaatagtaagtgtctgt Alignment from CESAR gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ggtagggatggctcaagctaaggtcaatagcttgccttccttgtgtgcaggtTTCATAGCTTTTTCACAAATGCCTGAGTTAGCTAAAAAGATCAAAATGTTTTTAGCACTGACCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCGTTATTACAGTCAGGCCACTTGCCCGATCCATTGCTCAAAgtgagtgagttgatattttaagcacctgattctcaatagtaagtgtctgt Alignment from Spaln_aa2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ggtagggatggctcaagctaaggtcaatagcttgccttccttgtgtgcagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCTAAAAAGATCAAAATGTTTTTAGCACTGACCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCGTTATTACAGTCAGGCCACTTGCCCGATCCATTGCTCAAAgtgagtgagttgatattttaagcacctgattctcaatagtaagtgtctgt Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ggtagggatggctcaagctaaggtcaatagcttgccttccttgtgtgcagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCTAAAAAGATCAAAATGTTTTTAGCACTGACCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCGTTATTACAGTCAGGCCACTTGCCCGATCCATTGCTCAAAgtgagtgagttgatattttaagcacctgattctcaatagtaagtgtctgt Alignment from Pairagon GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ggtagggatggctcaagctaaggtcaatagcttgccttccttgtgtgcagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCTAAAAAGATCAAAATGTTTTTAGCACTGACCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCGTTATTACAGTCAGGCCACTTGCCCGATCCATTGCTCAAAgtgagtgagttgatattttaagcacctgattctcaatagtaagtgtctgt Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ggtagggatggctcaagctaaggtcaatagcttgccttccttgtgtgcagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCTAAAAAGATCAAAATGTTTTTAGCACTGACCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCGTTATTACAGTCAGGCCACTTGCCCGATCCATTGCTCAAAgtgagtgagttgatattttaagcacctgattctcaatagtaagtgtctgt Alignment from Exonerate_coding2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ggtagggatggctcaagctaaggtcaatagcttgccttccttgtgtgcagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCTAAAAAGATCAAAATGTTTTTAGCACTGACCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCGTTATTACAGTCAGGCCACTTGCCCGATCCATTGCTCAAAgtgagtgagttgatattttaagcacctgattctcaatagtaagtgtctgt Alignment from GeneWise GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ggtagggatggctcaagctaaggtcaatagcttgccttccttgtgtgcagGTTTCATAGCTTTTTCACAAATGCCTGAGTTAGCTAAAAAGATCAAAATGTTTTTAGCACTGACCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCGTTATTACAGTCAGGCCACTTGCCCGATCCATTGCTCAAAgtgagtgagttgatattttaagcacctgattctcaatagtaagtgtctgt #### Lipa_ID6939_4 --> 1 - 1 Original Alignment tTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAg taaatctgctgtagaacattgatggcttttgatgtttttccttcctatagtTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTATATTTTAAATAAAACTGGCCGAGAACAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAggtaacattgattcacattttagtccaaatgtgtcatgcttttaccatgaa Alignment from CESAR tTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAg taaatctgctgtagaacattgatggcttttgatgtttttccttcctatagtTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTATATTTTAAATAAAACTGGCCGAGAACAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAggtaacattgattcacattttagtccaaatgtgtcatgcttttaccatgaa Alignment from Spaln_aa2Genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaacattgatggcttttgatgtttttccttcctatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTATATTTTAAATAAAACTGGCCGAGAACAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaacattgattcacattttagtccaaatgtgtcatgcttttaccatgaa Alignment from Spaln_nt2Genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaacattgatggcttttgatgtttttccttcctatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTATATTTTAAATAAAACTGGCCGAGAACAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaacattgattcacattttagtccaaatgtgtcatgcttttaccatgaa Alignment from Pairagon TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaacattgatggcttttgatgtttttccttcctatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTATATTTTAAATAAAACTGGCCGAGAACAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaacattgattcacattttagtccaaatgtgtcatgcttttaccatgaa Alignment from Exonerate_protein2genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaacattgatggcttttgatgtttttccttcctatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTATATTTTAAATAAAACTGGCCGAGAACAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaacattgattcacattttagtccaaatgtgtcatgcttttaccatgaa Alignment from Exonerate_coding2genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaacattgatggcttttgatgtttttccttcctatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTATATTTTAAATAAAACTGGCCGAGAACAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaacattgattcacattttagtccaaatgtgtcatgcttttaccatgaa Alignment from GeneWise TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaacattgatggcttttgatgtttttccttcctatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTATATTTTAAATAAAACTGGCCGAGAACAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaacattgattcacattttagtccaaatgtgtcatgcttttaccatgaa #### Lipf_ID6848_4 --> 1 - 1 Original Alignment cTTTGATGAAATGGCTAAATATGACCTTCCAGCCACCATAGACTTCATTGTACAGAAAACTGGACAAGAGAAGATACACTATGTTGGTCACTCTCAGGGCACCACTATCg ttacactatcgcttattggagcttattccttcacccctcaccctccacagcTTTGACAAAATGGCTAAGTATGACCTCCCAGCCGCCATAGATTTTATTGTTCCAAAAACAGGACAAGAGAAGATTCACTATGTTGACCATGCTGAGGATACCACCATTggtgagtatcaaaaaaactttgacacccatttgatgctaagaaatttggga Alignment from CESAR cTTTGATGAAATGGCTAAATATGACCTTCCAGCCACCATAGACTTCATTGTACAGAAAACTGGACAAGAGAAGATACACTATGTTGGTCACTCTCAGGGCACCACTATCg ttacactatcgcttattggagcttattccttcacccctcaccctccacagcTTTGACAAAATGGCTAAGTATGACCTCCCAGCCGCCATAGATTTTATTGTTCCAAAAACAGGACAAGAGAAGATTCACTATGTTGACCATGCTGAGGATACCACCATTggtgagtatcaaaaaaactttgacacccatttgatgctaagaaatttggga Alignment from Spaln_aa2Genome CTTTGATGAAATGGCTAAATATGACCTTCCAGCCACCATAGACTTCATTGTACAGAAAACTGGACAAGAGAAGATACACTATGTTGGTCACTCTCAGGGCACCACTATCG ttacactatcgcttattggagcttattccttcacccctcaccctccacagCTTTGACAAAATGGCTAAGTATGACCTCCCAGCCGCCATAGATTTTATTGTTCCAAAAACAGGACAAGAGAAGATTCACTATGTTGACCATGCTGAGGATACCACCATTGgtgagtatcaaaaaaactttgacacccatttgatgctaagaaatttggga Alignment from Spaln_nt2Genome CTTTGATGAAATGGCTAAATATGACCTTCCAGCCACCATAGACTTCATTGTACAGAAAACTGGACAAGAGAAGATACACTATGTTGGTCACTCTCAGGGCACCACTATCG ttacactatcgcttattggagcttattccttcacccctcaccctccacagCTTTGACAAAATGGCTAAGTATGACCTCCCAGCCGCCATAGATTTTATTGTTCCAAAAACAGGACAAGAGAAGATTCACTATGTTGACCATGCTGAGGATACCACCATTGgtgagtatcaaaaaaactttgacacccatttgatgctaagaaatttggga Alignment from Pairagon CTTTGATGAAATGGCTAAATATGACCTTCCAGCCACCATAGACTTCATTGTACAGAAAACTGGACAAGAGAAGATACACTATGTTGGTCACTCTCAGGGCACCACTATCG ttacactatcgcttattggagcttattccttcacccctcaccctccacagCTTTGACAAAATGGCTAAGTATGACCTCCCAGCCGCCATAGATTTTATTGTTCCAAAAACAGGACAAGAGAAGATTCACTATGTTGACCATGCTGAGGATACCACCATTGgtgagtatcaaaaaaactttgacacccatttgatgctaagaaatttggga Alignment from Exonerate_protein2genome CTTTGATGAAATGGCTAAATATGACCTTCCAGCCACCATAGACTTCATTGTACAGAAAACTGGACAAGAGAAGATACACTATGTTGGTCACTCTCAGGGCACCACTATCG ttacactatcgcttattggagcttattccttcacccctcaccctccacagCTTTGACAAAATGGCTAAGTATGACCTCCCAGCCGCCATAGATTTTATTGTTCCAAAAACAGGACAAGAGAAGATTCACTATGTTGACCATGCTGAGGATACCACCATTGgtgagtatcaaaaaaactttgacacccatttgatgctaagaaatttggga Alignment from Exonerate_coding2genome CTTTGATGAAATGGCTAAATATGACCTTCCAGCCACCATAGACTTCATTGTACAGAAAACTGGACAAGAGAAGATACACTATGTTGGTCACTCTCAGGGCACCACTATCG ttacactatcgcttattggagcttattccttcacccctcaccctccacagCTTTGACAAAATGGCTAAGTATGACCTCCCAGCCGCCATAGATTTTATTGTTCCAAAAACAGGACAAGAGAAGATTCACTATGTTGACCATGCTGAGGATACCACCATTGgtgagtatcaaaaaaactttgacacccatttgatgctaagaaatttggga Alignment from GeneWise CTTTGATGAAATGGCTAAATATGACCTTCCAGCCACCATAGACTTCATTGTACAGAAAACTGGACAAGAGAAGATACACTATGTTGGTCACTCTCAGGGCACCACTATCG ttacactatcgcttattggagcttattccttcacccctcaccctccacagCTTTGACAAAATGGCTAAGTATGACCTCCCAGCCGCCATAGATTTTATTGTTCCAAAAACAGGACAAGAGAAGATTCACTATGTTGACCATGCTGAGGATACCACCATTGgtgagtatcaaaaaaactttgacacccatttgatgctaagaaatttggga #### Lipf_ID6851_7 --> 0 - 0 Original Alignment AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattatcagttaactaactatacacagtgtggctcacttttctgacagAGTTGCTTTGGTGTGTATTTTGGTCATAATCCTGCAGGAACATCCACTCAAGACCTTTTCCCGTGGGCACAGgtaagtctgctgtgcttgagcttgagagtgtaccatgctaattcttcggg Alignment from CESAR AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattatcagttaactaactatacacagtgtggctcacttttctgacagAGTTGCTTTGGTGTGTATTTTGGTCATAATCCTGCAGGAACATCCACTCAAGACCTTTTCCCGTGGGCACAGgtaagtctgctgtgcttgagcttgagagtgtaccatgctaattcttcggg Alignment from Spaln_aa2Genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattatcagttaactaactatacacagtgtggctcacttttctgacagAGTTGCTTTGGTGTGTATTTTGGTCATAATCCTGCAGGAACATCCACTCAAGACCTTTTCCCGTGGGCACAGgtaagtctgctgtgcttgagcttgagagtgtaccatgctaattcttcggg Alignment from Spaln_nt2Genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattatcagttaactaactatacacagtgtggctcacttttctgacagAGTTGCTTTGGTGTGTATTTTGGTCATAATCCTGCAGGAACATCCACTCAAGACCTTTTCCCGTGGGCACAGgtaagtctgctgtgcttgagcttgagagtgtaccatgctaattcttcggg Alignment from Pairagon AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattatcagttaactaactatacacagtgtggctcacttttctgacagAGTTGCTTTGGTGTGTATTTTGGTCATAATCCTGCAGGAACATCCACTCAAGACCTTTTCCCGTGGGCACAGgtaagtctgctgtgcttgagcttgagagtgtaccatgctaattcttcggg Alignment from Exonerate_protein2genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattatcagttaactaactatacacagtgtggctcacttttctgacagAGTTGCTTTGGTGTGTATTTTGGTCATAATCCTGCAGGAACATCCACTCAAGACCTTTTCCCGTGGGCACAGgtaagtctgctgtgcttgagcttgagagtgtaccatgctaattcttcggg Alignment from Exonerate_coding2genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattatcagttaactaactatacacagtgtggctcacttttctgacagAGTTGCTTTGGTGTGTATTTTGGTCATAATCCTGCAGGAACATCCACTCAAGACCTTTTCCCGTGGGCACAGgtaagtctgctgtgcttgagcttgagagtgtaccatgctaattcttcggg Alignment from GeneWise AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattatcagttaactaactatacacagtgtggctcacttttctgacagAGTTGCTTTGGTGTGTATTTTGGTCATAATCCTGCAGGAACATCCACTCAAGACCTTTTCCCGTGGGCACAGgtaagtctgctgtgcttgagcttgagagtgtaccatgctaattcttcggg #### Lipk_ID6863_7 --> 0 - 0 Original Alignment AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gagataatttcactttgagatcagtacctgtgtttctcttgtgcccacagAGCTGCTTGGATGTGTATCTATCACAGAGTCCTACAGGAATATCTATTCTAAATAAGCTTCATTGGGCCCAGgtgagtgtttccattcacatgctgtttcatttttctcagaaattctatta Alignment from CESAR AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gagataatttcactttgagatcagtacctgtgtttctcttgtgcccacagAGCTGCTTGGATGTGTATCTATCACAGAGTCCTACAGGAATATCTATTCTAAATAAGCTTCATTGGGCCCAGgtgagtgtttccattcacatgctgtttcatttttctcagaaattctatta Alignment from Spaln_aa2Genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gagataatttcactttgagatcagtacctgtgtttctcttgtgcccacagAGCTGCTTGGATGTGTATCTATCACAGAGTCCTACAGGAATATCTATTCTAAATAAGCTTCATTGGGCCCAGgtgagtgtttccattcacatgctgtttcatttttctcagaaattctatta Alignment from Spaln_nt2Genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gagataatttcactttgagatcagtacctgtgtttctcttgtgcccacagAGCTGCTTGGATGTGTATCTATCACAGAGTCCTACAGGAATATCTATTCTAAATAAGCTTCATTGGGCCCAGgtgagtgtttccattcacatgctgtttcatttttctcagaaattctatta Alignment from Pairagon AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gagataatttcactttgagatcagtacctgtgtttctcttgtgcccacagAGCTGCTTGGATGTGTATCTATCACAGAGTCCTACAGGAATATCTATTCTAAATAAGCTTCATTGGGCCCAGgtgagtgtttccattcacatgctgtttcatttttctcagaaattctatta Alignment from Exonerate_protein2genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gagataatttcactttgagatcagtacctgtgtttctcttgtgcccacagAGCTGCTTGGATGTGTATCTATCACAGAGTCCTACAGGAATATCTATTCTAAATAAGCTTCATTGGGCCCAGgtgagtgtttccattcacatgctgtttcatttttctcagaaattctatta Alignment from Exonerate_coding2genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gagataatttcactttgagatcagtacctgtgtttctcttgtgcccacagAGCTGCTTGGATGTGTATCTATCACAGAGTCCTACAGGAATATCTATTCTAAATAAGCTTCATTGGGCCCAGgtgagtgtttccattcacatgctgtttcatttttctcagaaattctatta Alignment from GeneWise AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gagataatttcactttgagatcagtacctgtgtttctcttgtgcccacagAGCTGCTTGGATGTGTATCTATCACAGAGTCCTACAGGAATATCTATTCTAAATAAGCTTCATTGGGCCCAGgtgagtgtttccattcacatgctgtttcatttttctcagaaattctatta #### Lipn_ID6875_7 --> 0 - 0 Original Alignment AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG tgcataatgaataaaatcctgtagtgtcaaccactgccttctcgtttcagAGTCATCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATTCAGAATATGCTGCACAACAAGCAGgtagggaggcattctcactgacattttatactcccactgtcccccctgca Alignment from CESAR AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG tgcataatgaataaaatcctgtagtgtcaaccactgccttctcgtttcagAGTCATCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATTCAGAATATGCTGCACAACAAGCAGgtagggaggcattctcactgacattttattttttgtcttcttaaaatcta Alignment from Spaln_aa2Genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG tgcataatgaataaaatcctgtagtgtcaaccactgccttctcgtttcagAGTCATCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATTCAGAATATGCTGCACAACAAGCAGgtagggaggcattctcactgacattttatactcccactgtcccccctgca Alignment from Spaln_nt2Genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG tgcataatgaataaaatcctgtagtgtcaaccactgccttctcgtttcagAGTCATCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATTCAGAATATGCTGCACAACAAGCAGgtagggaggcattctcactgacattttatactcccactgtcccccctgca Alignment from Pairagon AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG tgcataatgaataaaatcctgtagtgtcaaccactgccttctcgtttcagAGTCATCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATTCAGAATATGCTGCACAACAAGCAGgtagggaggcattctcactgacattttatactcccactgtcccccctgca Alignment from Exonerate_protein2genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG tgcataatgaataaaatcctgtagtgtcaaccactgccttctcgtttcagAGTCATCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATTCAGAATATGCTGCACAACAAGCAGgtagggaggcattctcactgacattttatactcccactgtcccccctgca Alignment from Exonerate_coding2genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG tgcataatgaataaaatcctgtagtgtcaaccactgccttctcgtttcagAGTCATCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATTCAGAATATGCTGCACAACAAGCAGgtagggaggcattctcactgacattttatactcccactgtcccccctgca Alignment from GeneWise AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG tgcataatgaataaaatcctgtagtgtcaaccactgccttctcgtttcagAGTCATCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATTCAGAATATGCTGCACAACAAGCAGgtagggaggcattctcactgacattttatactcccactgtcccccctgca #### Lipo1_ID6828_5 --> 2 - 0 Original Alignment ctATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAACTCAACATTTTATTGGCTCCAATTTATAGTGTTCAACATTCCAAAGGTATTTCGCACCTTGCGTCTTACCTCACTCCAACGACTATCAAG aaagtatcagtcacgttagtagtttatcattcaaagtttttactttttagctATCGGGGCATTTGCAGCCAATCAGACACTGGCAGACAAGATTAAGCTTAACATTTTACTGGCTCCAGTTTATAGTGCTCAGCATGCCAAA------TCACACTTTGCATCCTATCTTACTCCTACA---ATTAAGgttaggaagttctatattgactaaaaatggctctatgtgaattagaactt Alignment from CESAR ctATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAACTCAACATTTTATTGGCTCCAATTTATAGTGTTCAACATTCCAAAGGTATTTCGCACCTTGCGTCTTACCTCACTCCAACGACTATCAAG aaagtatcagtcacgttagtagtttatcattcaaagtttttactttttagctATCGGGGCATTTGCAGCCAATCAGACACTGGCAGACAAGATTAAGCTTAACATTTTACTGGCTCCAGTTTATAGTGCTCAGCATGCCAAA------TCACACTTTGCATCCTATCTTACTCCTACA---ATTAAGgttaggaagttctatattgactaaaaatggctctatgtgaattagaactt Alignment from Spaln_aa2Genome CTATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAACTCAACATTTTATTGGCTCCAATTTATAGTGTTCAACATTCCAAAGGTATTTCGCACCTTGCGTCTTACCTCACTCCAACGACTATCAAG aaagtatcagtcacgttagtagtttatcattcaaagtttttactttttagCTATCGGGGCATTTGCAGCCAATCAGACACTGGCAGACAAGATTAAGCTTAACATTTTACTGGCTCCAGTTTATAGTGCTCAGCATGCCAAA------TCACACTTTGCATCCTATCTTACTCCT---ACAATTAAGgttaggaagttctatattgactaaaaatggctctatgtgaattagaactt Alignment from Spaln_nt2Genome CTATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAACTCAACATTTTATTGGCTCCAATTTATAGTGTTCAACATTCCAAAGGTATTTCGCACCTTGCGTCTTACCTCACTCCAACGACTATC aaagtatcagtcacgttagtagtttatcattcaaagtttttactttttagCTATCGGGGCATTTGCAGCCAATCAGACACTGGCAGACAAGATTAAGCTTAACATTTTACTGGCTCCAGTTTATAGTGCTCAGCATGCCAAA------TCACACTTTGCATCCTATCTTACTCCTACAATTAAGgttaggaagttctatattgactaaaaatggctctatgtgaattagaactt Alignment from Pairagon CTATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAACTCAACATTTTATTGGCTCCAATTTATAGTGTTCAACATTCCAAAGGTATTTCGCACCTTGCGTCTTACCTCACTCCAACGACTATCAAG aaagtatcagtcacgttagtagtttatcattcaaagtttttactttttagCTATCGGGGCATTTGCAGCCAATCAGACACTGGCAGACAAGATTAAGCTTAACATTTTACTGGCTCCAGTTTATAGTGCTCAGCATGCCAAA------TCACACTTTGCATCCTATCTTACTCCTACA---ATTAAGgttaggaagttctatattgactaaaaatggctctatgtgaattagaactt Alignment from Exonerate_protein2genome CTATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAACTCAACATTTTATTGGCTCCAATTTATAGTGTTCAACATTCCAAAGGTATTTCGCACCTTGCGTCTTACCTCACTCCAACGACTATCAAG aaagtatcagtcacgttagtagtttatcattcaaagtttttactttttagCTATCGGGGCATTTGCAGCCAATCAGACACTGGCAGACAAGATTAAGCTTAACATTTTACTGGCTCCAGTTTATAGTGCTCAGCATGCCAAA------TCACACTTTGCATCCTATCTTACTCCT---ACAATTAAGgttaggaagttctatattgactaaaaatggctctatgtgaattagaactt Alignment from Exonerate_coding2genome CTATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAACTCAACATTTTATTGGCTCCAATTTATAGTGTTCAACATTCCAAAGGTATTTCGCACCTTGCGTCTTACCTCACTCCAACGACTATCAAG aaagtatcagtcacgttagtagtttatcattcaaagtttttactttttagCTATCGGGGCATTTGCAGCCAATCAGACACTGGCAGACAAGATTAAGCTTAACATTTTACTGGCTCCAGTTTATAGTGCTCAGCATGCCAAA------TCACACTTTGCATCCTATCTTACTCCT---ACAATTAAGgttaggaagttctatattgactaaaaatggctctatgtgaattagaactt Alignment from GeneWise CTATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAACTCAACATTTTATTGGCTCCAATTTATAGTGTTCAACATTCCAAAGGTATTTCGCACCTTGCGTCTTACCTCACTCCAACGACTATCAAG aaagtatcagtcacgttagtagtttatcattcaaagtttttactttttagCTATCGGGGCATTTGCAGCCAATCAGACACTGGCAGACAAGATTAAGCTTAACATTTTACTGGCTCCAGTTTATAGTGCTCAGCATGCCAAA------TCACACTTTGCATCCTATCTTACTCCT---ACAATTAAGgttaggaagttctatattgactaaaaatggctctatgtgaattagaactt #### Lipo1_ID6830_3 --> 2 - 2 Original Alignment ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag aacacttgatgctctaagtatgggtgcctggtattgcatgttctgggcagccCCAAAGATGATAGTATTTTGTCAGCATGGATTACCTGCGACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGGTATGATGTTTGGATGGGTAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTaggtaaggagtctctccccaatatttttacatgttgtgaaggttaaaaggca Alignment from CESAR ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag aacacttgatgctctaagtatgggtgcctggtattgcatgttctgggcagccCCAAAGATGATAGTATTTTGTCAGCATGGATTACCTGCGACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGGTATGATGTTTGGATGGGTAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTaggtaaggagtctctccccaatatttttacatgttgtgaaggttaaaaggca Alignment from Spaln_aa2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacacttgatgctctaagtatgggtgcctggtattgcatgttctgggcagCCCCAAAGATGATAGTATTTTGTCAGCATGGATTACCTGCGACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGGTATGATGTTTGGATGGGTAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaaggagtctctccccaatatttttacatgttgtgaaggttaaaaggca Alignment from Spaln_nt2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGG---CCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacacttgatgctctaagtatgggtgcctggtattgcatgttctgggcagCCCCAAAGATGATAGTATTTTGTCAGCATGGATTACCTGCGACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGGTATGATGTTTGGATGGGTAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaaggagtctctccccaatatttttacatgttgtgaaggttaaaaggca Alignment from Pairagon CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGG---CCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacacttgatgctctaagtatgggtgcctggtattgcatgttctgggcagCCCCAAAGATGATAGTATTTTGTCAGCATGGATTACCTGCGACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGGTATGATGTTTGGATGGGTAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaaggagtctctccccaatatttttacatgttgtgaaggttaaaaggca Alignment from Exonerate_protein2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacacttgatgctctaagtatgggtgcctggtattgcatgttctgggcagCCCCAAAGATGATAGTATTTTGTCAGCATGGATTACCTGCGACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGGTATGATGTTTGGATGGGTAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaaggagtctctccccaatatttttacatgttgtgaaggttaaaaggca Alignment from Exonerate_coding2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacacttgatgctctaagtatgggtgcctggtattgcatgttctgggcagCCCCAAAGATGATAGTATTTTGTCAGCATGGATTACCTGCGACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGGTATGATGTTTGGATGGGTAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaaggagtctctccccaatatttttacatgttgtgaaggttaaaaggca Alignment from GeneWise CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacacttgatgctctaagtatgggtgcctggtattgcatgttctgggcagCCCCAAAGATGATAGTATTTTGTCAGCATGGATTACCTGCGACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGGTATGATGTTTGGATGGGTAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaaggagtctctccccaatatttttacatgttgtgaaggttaaaaggca #### Loxl4_ID8561_12 --> 2 - 0 Original Alignment gaGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG caggcccatcaacctcttatacccactcctctttgtctttcaccccttagggGCACAACGTCGCTATGCCTATGCTAATTTCGGAGAGCAGGGAGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAG---GTTCCAGGGGACTACATCTTCCAGgtatcttcaggtcaggacatacactccatgttttactgtatgctgcttct Alignment from CESAR gaGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG caggcccatcaacctcttatacccactcctctttgtctttcaccccttagggGCACAACGTCGCTATGCCTATGCTAATTTCGGAGAGCAGGGAGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtatcttcaggtcaggacatacactccatgttttactgtatgctgcttct Alignment from Spaln_aa2Genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG caggcccatcaacctcttatacccactcctctttgtctttcaccccttagGGGCACAACGTCGCTATGCCTATGCTAATTTCGGAGAGCAGGGAGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtatcttcaggtcaggacatacactccatgttttactgtatgctgcttct Alignment from Spaln_nt2Genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG caggcccatcaacctcttatacccactcctctttgtctttcaccccttagGGGCACAACGTCGCTATGCCTATGCTAATTTCGGAGAGCAGGGAGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGA---GGTTCCAGGGGACTACATCTTCCAGgtatcttcaggtcaggacatacactccatgttttactgtatgctgcttct Alignment from Pairagon GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG caggcccatcaacctcttatacccactcctctttgtctttcaccccttagGGGCACAACGTCGCTATGCCTATGCTAATTTCGGAGAGCAGGGAGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGT---TCCAGGGGACTACATCTTCCAGgtatcttcaggtcaggacatacactccatgttttactgtatgctgcttct Alignment from Exonerate_protein2genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG caggcccatcaacctcttatacccactcctctttgtctttcaccccttagGGGCACAACGTCGCTATGCCTATGCTAATTTCGGAGAGCAGGGAGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtatcttcaggtcaggacatacactccatgttttactgtatgctgcttct Alignment from Exonerate_coding2genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG caggcccatcaacctcttatacccactcctctttgtctttcaccccttagGGGCACAACGTCGCTATGCCTATGCTAATTTCGGAGAGCAGGGAGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtatcttcaggtcaggacatacactccatgttttactgtatgctgcttct Alignment from GeneWise GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG caggcccatcaacctcttatacccactcctctttgtctttcaccccttagGGGCACAACGTCGCTATGCCTATGCTAATTTCGGAGAGCAGGGAGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtatcttcaggtcaggacatacactccatgttttactgtatgctgcttct #### Loxl4_ID8562_11 --> 1 - 1 Original Alignment gCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAg cctccccaaccattatcgacacattccagtgccccactgtgtcttcccaggCAGTACCACAGG---------------------------------CTG---------AAA---GCTGAGGGACATACAGCCATTTTCTGTCTAGAAGATACAAATCGTCTGTCAggtgagtacgtatttattttaactcagcccatgcgttttttaaggggtgcc Alignment from CESAR gCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAg cctccccaaccattatcgacacattccagtgccccactgtgtcttcccaggCAGTACCACAGG---------------------------CTGAAA------------------GCTGAGGGACATACAGCCATTTTCTGTCTAGAAGATACAAATCGTCTGTCAggtgagtacgtatttattttaactcagcccatgcgttttttaaggggtgcc Alignment from Spaln_aa2Genome CCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG cctccccaaccattatcgacacattccagtgccccactgtgtcttcccaggcagtaccacaggctgaaagCTGAGGGACATACAGCCATTTTCTGTCTAGAAGATACAAATCGTCTGTCAGgtgagtacgtatttattttaactcagcccatgcgttttttaaggggtgcc Alignment from Spaln_nt2Genome CCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG cctccccaaccattatcgacacattccagtgccccactgtgtcttcccaggcagtaccacaggctgaaagCTGAGGGACATACAGCCATTTTCTGTCTAGAAGATACAAATCGTCTGTCAGgtgagtacgtatttattttaactcagcccatgcgttttttaaggggtgcc Alignment from Pairagon GCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG cctccccaaccattatcgacacattccagtgccccactgtgtcttcccagGCAGTACCACAGGCTGAAA---------------------------------------------GCTGAGGGACATACAGCCATTTTCTGTCTAGAAGATACAAATCGTCTGTCAGgtgagtacgtatttattttaactcagcccatgcgttttttaaggggtgcc Alignment from Exonerate_protein2genome cctccccaaccattatcgacacattccagtgccccactgtgtcttcccaggcagtaccacaggctgaaagctgagggacatacagccattttctgtctagaagatacaaatcgtctgtcaggtgagtacgtatttattttaactcagcccatgcgttttttaaggggtgcc Alignment from Exonerate_coding2genome GCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG cctccccaaCCATTATCGACACATTCCAGTGCCCCACTGTGTCTTCCCAGGCAGTACCACAGGCTGAAAGCTGAGGGACATACAGCCATTTTCTGTCTAGAAGATACAAATCGTCTGTCAGGTGAgtacgtatttattttaactcagcccatgcgttttttaaggggtgcc Alignment from GeneWise GCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG cctccccaaccattatcgacacattccagtgccccactgtgtcttcccagGCAGTACCACAGGCTGAAA---------------------------------------------GCTGAGGGACATACAGCCATTTTCTGTCTAGAAGATACAAATCGTCTGTCAGgtgagtacgtatttattttaactcagcccatgcgttttttaaggggtgcc #### Loxl4_ID8566_9 --> 0 - 1 Original Alignment GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCC---TGTATGAACa ctttatgagcagtggttaccatgttgtgcatgttttcctcttgtccccagGACACTTGGTACTGGCATGGGACACCAGAAGGAAAGGAAGCAGTGATGCCTGACGTTAGCTGT------------ATGGCACTACAGCAATGTCAAAGACATGGGCCCGTGCATTGCTCTCATAGCCCTGGACACTTCTCAGCTGGTATTGCTGCCTGCATGAATagtaagggtatgataaagagtacatagtgattccagagctcagtgccattc Alignment from CESAR GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTT---GCCTGTATGAACa ctttatgagcagtggttaccatgttgtgcatgttttcctcttgtccccagGACACTTGGTACTGGCATGGGACACCAGAAGGAAAGGAAGCAGTGATGCCTGACGTTAGCTGT------------ATGGCACTACAGCAATGTCAAAGACATGGGCCCGTGCATTGCTCTCATAGCCCTGGACACTTCTCAGCTGGTATTGCTGCCTGCATGAATagtaagggtatgataaagagtacatagtgattccagagctcagtgccattc Alignment from Spaln_aa2Genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTT---GCCTGTATGAACA ctttatgagcagtggttaccatgttgtgcatgttttcctcttgtccccagGACACTTGGTACTGGCATGGGACACCAGAAGGAAAGGAAGCAGTGATGCCTGACGTTAGCTGT------------ATGGCACTACAGCAATGTCAAAGACATGGGCCCGTGCATTGCTCTCATAGCCCTGGACACTTCTCAGCTGGTATTGCTGCCTGCATGAATAgtaagggtatgataaagagtacatagtgattccagagctcagtgccattc Alignment from Spaln_nt2Genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGC---CTGTATGAACA ctttatgagcagtggttaccatgttgtgcatgttttcctcttgtccccagGACACTTGGTACTGGCATGGGACACCAGAAGGAAAGGAAGCAGTGATGCCTGACGTTAGCTG------------TATGGCACTACAGCAATGTCAAAGACATGGGCCCGTGCATTGCTCTCATAGCCCTGGACACTTCTCAGCTGGTATTGCTGCCTGCATGAATAgtaagggtatgataaagagtacatagtgattccagagctcagtgccattc Alignment from Pairagon GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGG---CGTTGCCTGTATGAACA ctttatgagcagtggttaccatgttgtgcatgttttcctcttgtccccagGACACTTGGTACTGGCATGGGACACCAGAAGGAAAGGAAGCAGTGATGCCTGACGTTAGCTGT------------ATGGCACTACAGCAATGTCAAAGACATGGGCCCGTGCATTGCTCTCATAGCCCTGGACACTTCTCAGCTGGTATTGCTGCCTGCATGAATAgtaagggtatgataaagagtacatagtgattccagagctcagtgccattc Alignment from Exonerate_protein2genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTT---GCCTGTATGAACA ctttatgagcagtggttaccatgttgtgcatgttttcctcttgtccccagGACACTTGGTACTGGCATGGGACACCAGAAGGAAAGGAAGCAGTGATGCCTGACGTTAGCTGT------------ATGGCACTACAGCAATGTCAAAGACATGGGCCCGTGCATTGCTCTCATAGCCCTGGACACTTCTCAGCTGGTATTGCTGCCTGCATGAATAgtaagggtatgataaagagtacatagtgattccagagctcagtgccattc Alignment from Exonerate_coding2genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTT---GCCTGTATGAACA ctttatgagcagtggttaccatgttgtgcatgttttcctcttgtccccagGACACTTGGTACTGGCATGGGACACCAGAAGGAAAGGAAGCAGTGATGCCTGACGTTAGCTGT------------ATGGCACTACAGCAATGTCAAAGACATGGGCCCGTGCATTGCTCTCATAGCCCTGGACACTTCTCAGCTGGTATTGCTGCCTGCATGAATAgtaagggtatgataaagagtacatagtgattccagagctcagtgccattc Alignment from GeneWise GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTT---GCCTGTATGAACA ctttatgagcagtggttaccatgttgtgcatgttttcctcttgtccccagGACACTTGGTACTGGCATGGGACACCAGAAGGAAAGGAAGCAGTGATGCCTGACGTTAGCTGT------------ATGGCACTACAGCAATGTCAAAGACATGGGCCCGTGCATTGCTCTCATAGCCCTGGACACTTCTCAGCTGGTATTGCTGCCTGCATGAATAgtaagggtatgataaagagtacatagtgattccagagctcagtgccattc #### Loxl4_ID8567_8 --> 0 - 0 Original Alignment GTGCGCTTGGCTGGTGGGCGCAACTCCGAAGAGGGAGTGGTGGAGGTGCAGGTGGAGGTGAATGGGGTCCCACGATGGGGGACTGTATGCAGTGACCACTGGGGGCTCACCGAAGCCATGGTGACCTGTCGGCAACTTGGTCTGGGATTTGCCAACTTTGCTCTCAAG tccctgctgacagttgcttggcttccctgaatgtatgtttgtgtttctagGTGTGTCTGGCAGGTAGTTGTAACACTGAAGAGGGAGTAGTGGAAGTCCAGGTAGAAGTCAATGGT---GCATGTTGGGGGACTGTATGCAGTGACCATTGGGGTTTAATG------ATGGTGACCTGTCGGCCACTTGGTCTAGGATTTGCAAACTTTGCACTCAAGgtgagcggcagaacatattcaacagagctaattggatctctcaagcttag Alignment from CESAR GTGCGCTTGGCTGGTGGGCGCAACTCCGAAGAGGGAGTGGTGGAGGTGCAGGTGGAGGTGAATGGGGTCCCACGATGGGGGACTGTATGCAGTGACCACTGGGGGCTCACCGAAGCCATGGTGACCTGTCGGCAACTTGGTCTGGGATTTGCCAACTTTGCTCTCAAG tccctgctgacagttgcttggcttccctgaatgtatgtttgtgtttctagGTGTGTCTGGCAGGTAGTTGTAACACTGAAGAGGGAGTAGTGGAAGTCCAGGTAGAAGTCAATGGT---GCATGTTGGGGGACTGTATGCAGTGACCATTGGGGTTTAATG------ATGGTGACCTGTCGGCCACTTGGTCTAGGATTTGCAAACTTTGCACTCAAGgtgagcggcagaacatattcaacagagctaattggatctctcaagcttag Alignment from Spaln_aa2Genome GTGCGCTTGGCTGGTGGGCGCAACTCCGAAGAGGGAGTGGTGGAGGTGCAGGTGGAGGTGAATGGGGTCCCACGATGGGGGACTGTATGCAGTGACCACTGGGGGCTCACCGAAGCCATGGTGACCTGTCGGCAACTTGGTCTGGGATTTGCCAACTTTGCTCTCAAG tccctgctgacagttgcttggcttccctgaatgtatgtttgtgtttctagGTGTGTCTGGCAGGTAGTTGTAACACTGAAGAGGGAGTAGTGGAAGTCCAGGTAGAAGTCAATGGT---GCATGTTGGGGGACTGTATGCAGTGACCATTGGGGTTTAATG------ATGGTGACCTGTCGGCCACTTGGTCTAGGATTTGCAAACTTTGCACTCAAGgtgagcggcagaacatattcaacagagctaattggatctctcaagcttag Alignment from Spaln_nt2Genome GTGCGCTTGGCTGGTGGGCGCAACTCCGAAGAGGGAGTGGTGGAGGTGCAGGTGGAGGTGAATGGGGTCCCACGATGGGGGACTGTATGCAGTGACCACTGGGGGCTCACCGAAGCCATGGTGACCTGTCGGCAACTTGGTCTGGGATTTGCCAACTTTGCTCTCAAG tccctgctgacagttgcttggcttccctgaatgtatgtttgtgtttctagGTGTGTCTGGCAGGTAGTTGTAACACTGAAGAGGGAGTAGTGGAAGTCCAGGTAGAAGTCAATGGTG---CATGTTGGGGGACTGTATGCAGTGACCATTGGGGTTT------AATGATGGTGACCTGTCGGCCACTTGGTCTAGGATTTGCAAACTTTGCACTCAAGgtgagcggcagaacatattcaacagagctaattggatctctcaagcttag Alignment from Pairagon GTGCGCTTGGCTGGTGGGCGCAACTCCGAAGAGGGAGTGGTGGAGGTGCAGGTGGAGGTGAATGGGGTCCCACGATGGGGGACTGTATGCAGTGACCACTGGGG------GCTCACCGAAGCCATGGTGACCTGTCGGCAACTTGGTCTGGGATTTGCCAACTTTGCTCTCAAG tccctgctgacagttgcttggcttccctgaatgtatgtttgtgtttctagGTGTGTCTGGCAGGTAGTTGTAACACTGAAGAGGGAGTAGTGGAAGTCCAGGTAGAAGTCAATGGTG---CATGTTGGGGGACTGTATGCAGTGACCATTGGGGTTTAATG------------ATGGTGACCTGTCGGCCACTTGGTCTAGGATTTGCAAACTTTGCACTCAAGgtgagcggcagaacatattcaacagagctaattggatctctcaagcttag Alignment from Exonerate_protein2genome GTGCGCTTGGCTGGTGGGCGCAACTCCGAAGAGGGAGTGGTGGAGGTGCAGGTGGAGGTGAATGGGGTCCCACGATGGGGGACTGTATGCAGTGACCACTGGGGGCTCACCGAAGCCATGGTGACCTGTCGGCAACTTGGTCTGGGATTTGCCAACTTTGCTCTCAAG tccctgctgacagttgcttggcttccctgaatgtatgtttgtgtttctagGTGTGTCTGGCAGGTAGTTGTAACACTGAAGAGGGAGTAGTGGAAGTCCAGGTAGAAGTCAATGGTGCA---TGTTGGGGGACTGTATGCAGTGACCATTGGGGTTTA------ATGATGGTGACCTGTCGGCCACTTGGTCTAGGATTTGCAAACTTTGCACTCAAGgtgagcggcagaacatattcaacagagctaattggatctctcaagcttag Alignment from Exonerate_coding2genome GTGCGCTTGGCTGGTGGGCGCAACTCCGAAGAGGGAGTGGTGGAGGTGCAGGTGGAGGTGAATGGGGTCCCACGATGGGGGACTGTATGCAGTGACCACTGGGGGCTCACCGAAGCCATGGTGACCTGTCGGCAACTTGGTCTGGGATTTGCCAACTTTGCTCTCAAG tccctgctgacagttgcttggcttccctgaatgtatgtttgtgtttctagGTGTGTCTGGCAGGTAGTTGTAACACTGAAGAGGGAGTAGTGGAAGTCCAGGTAGAAGTCAATGGTGCA---TGTTGGGGGACTGTATGCAGTGACCATTGGGGTTTA------ATGATGGTGACCTGTCGGCCACTTGGTCTAGGATTTGCAAACTTTGCACTCAAGgtgagcggcagaacatattcaacagagctaattggatctctcaagcttag Alignment from GeneWise GTGCGCTTGGCTGGTGGGCGCAACTCCGAAGAGGGAGTGGTGGAGGTGCAGGTGGAGGTGAATGGGGTCCCACGATGGGGGACTGTATGCAGTGACCACTGGGGGCTCACCGAAGCCATGGTGACCTGTCGGCAACTTGGTCTGGGATTTGCCAACTTTGCTCTCAAG tccctgctgacagttgcttggcttccctgaatgtatgtttgtgtttctagGTGTGTCTGGCAGGTAGTTGTAACACTGAAGAGGGAGTAGTGGAAGTCCAGGTAGAAGTCAATGGTGCA---TGTTGGGGGACTGTATGCAGTGACCATTGGGGTTTAATG------ATGGTGACCTGTCGGCCACTTGGTCTAGGATTTGCAAACTTTGCACTCAAGgtgagcggcagaacatattcaacagagctaattggatctctcaagcttag #### Loxl4_ID8568_7 --> 2 - 0 Original Alignment ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTAT------GAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG aagaaataaaggaatggagaggcatctctgtacgggggttgtttttgcagggCTAGGA---ATCCATCTGAGTGAAGTACAATGCAGGGGGTATGAACGGGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACCAAACAGTTGTCAGCATGCAAATGGTGCCACTATCAGGTGCAATATTCCAGATATAGGCTTCAGAAACAAGgtgattcacactctattcaagtttcaggtttccctgccaattgtgtggat Alignment from CESAR ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGG------ACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG aagaaataaaggaatggagaggcatctctgtacgggggttgtttttgcagggCTAGGA---ATCCATCTGAGTGAAGTACAATGCAGGGGGTATGAACGGGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACCAAACAGTTGTCAGCATGCAAATGGTGCCACTATCAGGTGCAATATTCCAGATATAGGCTTCAGAAACAAGgtgattcacactctattcaagtttcaggtttccctgccaattgtgtggat Alignment from Spaln_aa2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTAT------GAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG aagaaataaaggaatggagaggcatctctgtacgggggttgtttttgcagGGCTAGGA---ATCCATCTGAGTGAAGTACAATGCAGGGGGTATGAACGGGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACCAAACAGTTGTCAGCATGCAAATGGTGCCACTATCAGGTGCAATATTCCAGATATAGGCTTCAGAAACAAGgtgattcacactctattcaagtttcaggtttccctgccaattgtgtggat Alignment from Spaln_nt2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGA------CCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG aagaaataaaggaatggagaggcatctctgtacgggggttgtttttgcagGGCTAGGA---ATCCATCTGAGTGAAGTACAATGCAGGGGGTATGAACGGGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACCAAACAGTTGTCAGCATGCAAATGGTGCCACTATCAGGTGCAATATTCCAGATATAGGCTTCAGAAACAAGgtgattcacactctattcaagtttcaggtttccctgccaattgtgtggat Alignment from Pairagon GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGG------ACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG aagaaataaaggaatggagaggcatctctgtacgggggttgtttttgcagGGCTAGGA---ATCCATCTGAGTGAAGTACAATGCAGGGGGTATGAACGGGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACCAAACAGTTGTCAGCATGCAAATGGTGCCACTATCAGGTGCAATATTCCAGATATAGGCTTCAGAAACAAGgtgattcacactctattcaagtttcaggtttccctgccaattgtgtggat Alignment from Exonerate_protein2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTAT------GAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG aagaaataaaggaatggagaggcatctctgtacgggggttgtttttgcagGGCTAGGA---ATCCATCTGAGTGAAGTACAATGCAGGGGGTATGAACGGGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACCAAACAGTTGTCAGCATGCAAATGGTGCCACTATCAGGTGCAATATTCCAGATATAGGCTTCAGAAACAAGgtgattcacactctattcaagtttcaggtttccctgccaattgtgtggat Alignment from Exonerate_coding2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTAT------GAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG aagaaataaaggaatggagaggcatctctgtacgggggttgtttttgcagGGCTAGGA---ATCCATCTGAGTGAAGTACAATGCAGGGGGTATGAACGGGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACCAAACAGTTGTCAGCATGCAAATGGTGCCACTATCAGGTGCAATATTCCAGATATAGGCTTCAGAAACAAGgtgattcacactctattcaagtttcaggtttccctgccaattgtgtggat Alignment from GeneWise -------------------------------------------------GGGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTAT------GAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG AAGAAATAAAGGAATGGAGAGGCATCTCTGTACGGGGGTTGTTTTTGCAGGGCTAGGA---ATCCATCTGAGTGAAGTACAATGCAGGGGGTATGAACGGGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACCAAACAGTTGTCAGCATGCAAATGGTGCCACTATCAGGTGCAATATTCCAGATATAGGCTTCAGAAACAAGgtgattcacactctattcaagtttcaggtttccctgccaattgtgtggat #### Loxl4_ID8569_6 --> 0 - 1 Original Alignment CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAg tcttcatagggcaagctgctcctctccctgtcgttttctcaacccctaagCAGGAATTAAAAGTGCGCCTGCGGTCTGGGGCTCAGGTGGGAGAGGGCCGGGTGGAAGTACTTATGAACCATCAGTGGGGCACAGTCTGTGACCACAAGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTAGGGAC---TTATTTGGAGCTCAGTTAGAACAAggtgagaagagagagattgaaaggttcttaaaaagaaataaaggaatggag Alignment from CESAR CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAg tcttcatagggcaagctgctcctctccctgtcgttttctcaacccctaagCAGGAATTAAAAGTGCGCCTGCGGTCTGGGGCTCAGGTGGGAGAGGGCCGGGTGGAAGTACTTATGAACCATCAGTGGGGCACAGTCTGTGACCACAAGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTAGGGAC---TTATTTGGAGCTCAGTTAGAACAAggtgagaagagagagattgaaaggttcttaaaaagaaataaaggaatggag Alignment from Spaln_aa2Genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG tcttcatagggcaagctgctcctctccctgtcgttttctcaacccctaagCAGGAATTAAAAGTGCGCCTGCGGTCTGGGGCTCAGGTGGGAGAGGGCCGGGTGGAAGTACTTATGAACCATCAGTGGGGCACAGTCTGTGACCACAAGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTAGGGAC---TTATTTGGAGCTCAGTTAGAACAAGgtgagaagagagagattgaaaggttcttaaaaagaaataaaggaatggag Alignment from Spaln_nt2Genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG tcttcatagggcaagctgctcctctccctgtcgttttctcaacccctaagCAGGAATTAAAAGTGCGCCTGCGGTCTGGGGCTCAGGTGGGAGAGGGCCGGGTGGAAGTACTTATGAACCATCAGTGGGGCACAGTCTGTGACCACAAGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTAGGGA---CTTATTTGGAGCTCAGTTAGAACAAGgtgagaagagagagattgaaaggttcttaaaaagaaataaaggaatggag Alignment from Pairagon CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG tcttcatagggcaagctgctcctctccctgtcgttttctcaacccctaagCAGGAATTAAAAGTGCGCCTGCGGTCTGGGGCTCAGGTGGGAGAGGGCCGGGTGGAAGTACTTATGAACCATCAGTGGGGCACAGTCTGTGACCACAAGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTAGGGA---CTTATTTGGAGCTCAGTTAGAACAAGgtgagaagagagagattgaaaggttcttaaaaagaaataaaggaatggag Alignment from Exonerate_protein2genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG tcttcatagggcaagctgctcctctccctgtcgttttctcaacccctaagCAGGAATTAAAAGTGCGCCTGCGGTCTGGGGCTCAGGTGGGAGAGGGCCGGGTGGAAGTACTTATGAACCATCAGTGGGGCACAGTCTGTGACCACAAGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTAGGGAC---TTATTTGGAGCTCAGTTAGAACAAGgtgagaagagagagattgaaaggttcttaaaaagaaataaaggaatggag Alignment from Exonerate_coding2genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG tcttcatagggcaagctgctcctctccctgtcgttttctcaacccctaagCAGGAATTAAAAGTGCGCCTGCGGTCTGGGGCTCAGGTGGGAGAGGGCCGGGTGGAAGTACTTATGAACCATCAGTGGGGCACAGTCTGTGACCACAAGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTAGGGAC---TTATTTGGAGCTCAGTTAGAACAAGgtgagaagagagagattgaaaggttcttaaaaagaaataaaggaatggag Alignment from GeneWise CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG tcttcatagggcaagctgctcctctccctgtcgttttctcaacccctaagCAGGAATTAAAAGTGCGCCTGCGGTCTGGGGCTCAGGTGGGAGAGGGCCGGGTGGAAGTACTTATGAACCATCAGTGGGGCACAGTCTGTGACCACAAGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTAGGGAC---TTATTTGGAGCTCAGTTAGAACAAGgtgagaagagagagattgaaaggttcttaaaaagaaataaaggaatggag #### Loxl4_ID8570_5 --> 1 - 0 Original Alignment gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttagggcaccctatgatctttagggtgcctgcatctatttgttccctcagaTTAAACAGCCTGACAAAAGAGAATTCCTTCTGGATTCATAGGTTTGATTGTCTTGGGACAGAACCCTACTTGGCTAAATGTCAGGTACAGGTGGCTCCTGGAAGAGGCAAACTGCGACCAGCCTGCCCAGGTAGCATGCAAGCTGTAGTCAGTTGTGTCACAGGTCCACCCTACCGGCAGCAAGAGCCAAAGCCTACACATAAAGAGTCACATGTAGAGgttcgtgactaaggtttattgaatcattgttatgtagattcttgcaagtc Alignment from CESAR gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttagggcaccctatgatctttagggtgcctgcatctatttgttccctcagaTTAAACAGCCTGACAAAAGAGAATTCCTTCTGGATTCATAGGTTTGATTGTCTTGGGACAGAACCCTACTTGGCTAAATGTCAGGTACAGGTGGCTCCTGGAAGAGGCAAACTGCGACCAGCCTGCCCAGGTAGCATGCAAGCTGTAGTCAGTTGTGTCACAGGTCCACCCTACCGGCAGCAAGAGCCAAAGCCTACACATAAAGAGTCACATGTAGAGgttcgtgactaaggtttattgaatcattgttatgtagattcttgcaagtc Alignment from Spaln_aa2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttagggcaccctatgatctttagggtgcctgcatctatttgttccctcagATTAAACAGCCTGACAAAAGAGAATTCCTTCTGGATTCATAGGTTTGATTGTCTTGGGACAGAACCCTACTTGGCTAAATGTCAGGTACAGGTGGCTCCTGGAAGAGGCAAACTGCGACCAGCCTGCCCAGGTAGCATGCAAGCTGTAGTCAGTTGTGTCACAGGTCCACCCTACCGGCAGCAAGAGCCAAAGCCTACACATAAAGAGTCACATGTAGAGgttcgtgactaaggtttattgaatcattgttatgtagattcttgcaagtc Alignment from Spaln_nt2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttagggcaccctatgatctttagggtgcctgcatctatttgttccctcagATTAAACAGCCTGACAAAAGAGAATTCCTTCTGGATTCATAGGTTTGATTGTCTTGGGACAGAACCCTACTTGGCTAAATGTCAGGTACAGGTGGCTCCTGGAAGAGGCAAACTGCGACCAGCCTGCCCAGGTAGCATGCAAGCTGTAGTCAGTTGTGTCACAGGTCCACCCTACCGGCAGCAAGAGCCAAAGCCTACACATAAAGAGTCACATGTAGAGgttcgtgactaaggtttattgaatcattgttatgtagattcttgcaagtc Alignment from Pairagon GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttagggcaccctatgatctttagggtgcctgcatctatttgttccctcagATTAAACAGCCTGACAAAAGAGAATTCCTTCTGGATTCATAGGTTTGATTGTCTTGGGACAGAACCCTACTTGGCTAAATGTCAGGTACAGGTGGCTCCTGGAAGAGGCAAACTGCGACCAGCCTGCCCAGGTAGCATGCAAGCTGTAGTCAGTTGTGTCACAGGTCCACCCTACCGGCAGCAAGAGCCAAAGCCTACACATAAAGAGTCACATGTAGAGgttcgtgactaaggtttattgaatcattgttatgtagattcttgcaagtc Alignment from Exonerate_protein2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttagggcaccctatgatctttagggtgcctgcatctatttgttccctcagATTAAACAGCCTGACAAAAGAGAATTCCTTCTGGATTCATAGGTTTGATTGTCTTGGGACAGAACCCTACTTGGCTAAATGTCAGGTACAGGTGGCTCCTGGAAGAGGCAAACTGCGACCAGCCTGCCCAGGTAGCATGCAAGCTGTAGTCAGTTGTGTCACAGGTCCACCCTACCGGCAGCAAGAGCCAAAGCCTACACATAAAGAGTCACATGTAGAGgttcgtgactaaggtttattgaatcattgttatgtagattcttgcaagtc Alignment from Exonerate_coding2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttagggcaccctatgatctttagggtgcctgcatctatttgttccctcagATTAAACAGCCTGACAAAAGAGAATTCCTTCTGGATTCATAGGTTTGATTGTCTTGGGACAGAACCCTACTTGGCTAAATGTCAGGTACAGGTGGCTCCTGGAAGAGGCAAACTGCGACCAGCCTGCCCAGGTAGCATGCAAGCTGTAGTCAGTTGTGTCACAGGTCCACCCTACCGGCAGCAAGAGCCAAAGCCTACACATAAAGAGTCACATGTAGAGgttcgtgactaaggtttattgaatcattgttatgtagattcttgcaagtc Alignment from GeneWise GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttagggcaccctatgatctttagggtgcctgcatctatttgttccctcagATTAAACAGCCTGACAAAAGAGAATTCCTTCTGGATTCATAGGTTTGATTGTCTTGGGACAGAACCCTACTTGGCTAAATGTCAGGTACAGGTGGCTCCTGGAAGAGGCAAACTGCGACCAGCCTGCCCAGGTAGCATGCAAGCTGTAGTCAGTTGTGTCACAGGTCCACCCTACCGGCAGCAAGAGCCAAAGCCTACACATAAAGAGTCACATGTAGAGgttcgtgactaaggtttattgaatcattgttatgtagattcttgcaagtc #### Lpxn_ID3471_4 --> 1 - 0 Original Alignment tGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tcattttgattttgatgtgaaagtctatgtgactctgcccttggcctcagtGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCGGCCGCTGCTCACGTCGATGAGCTCATGGCCCACCTTAGTGAGATGCAGGCAAAGgtgagatgacatttacttaatggaatccttaattgcactaactagatgat Alignment from CESAR tGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tcattttgattttgatgtgaaagtctatgtgactctgcccttggcctcagtGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCGGCCGCTGCTCACGTCGATGAGCTCATGGCCCACCTTAGTGAGATGCAGGCAAAGgtgagatgacatttacttaatggaatccttaattgcactaactagatgat Alignment from Spaln_aa2Genome TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tcattttgattttgatgtgaaagtctatgtgactctgcccttggcctcagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCGGCCGCTGCTCACGTCGATGAGCTCATGGCCCACCTTAGTGAGATGCAGGCAAAGgtgagatgacatttacttaatggaatccttaattgcactaactagatgat Alignment from Spaln_nt2Genome TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tcattttgattttgatgtgaaagtctatgtgactctgcccttggcctcagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCGGCCGCTGCTCACGTCGATGAGCTCATGGCCCACCTTAGTGAGATGCAGGCAAAGgtgagatgacatttacttaatggaatccttaattgcactaactagatgat Alignment from Pairagon TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tcattttgattttgatgtgaaagtctatgtgactctgcccttggcctcagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCGGCCGCTGCTCACGTCGATGAGCTCATGGCCCACCTTAGTGAGATGCAGGCAAAGgtgagatgacatttacttaatggaatccttaattgcactaactagatgat Alignment from Exonerate_protein2genome TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tcattttgattttgatgtgaaagtctatgtgactctgcccttggcctcagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCGGCCGCTGCTCACGTCGATGAGCTCATGGCCCACCTTAGTGAGATGCAGGCAAAGgtgagatgacatttacttaatggaatccttaattgcactaactagatgat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tcattttgattttgatgtgaaagtctatgtgactctgcccttggcctcagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCGGCCGCTGCTCACGTCGATGAGCTCATGGCCCACCTTAGTGAGATGCAGGCAAAGgtgagatgacatttacttaatggaatccttaattgcactaactagatgat #### Lrp5_ID110_14 --> 0 - 2 Original Alignment CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgg tttctgcagtgcactcctagggtgctcagttctcttctccactgtcacagCCGTTCATGCTAACCTCTCCTAGTCAGAGCCTGAGTCCAGACAGACAGCCACATGACCTAAGCATTGACATCTACAGCCGGACCTTGTTCTGGACCTGTGAGGCAACCAATGCCATTAATGTACACCGCCTGGATGGGGACGCCATGGGGGTGGTGCTAAGAGGAGACCATGACAAGCCAAGAGCCATAGCGGTCAATGCTGAACGAgggtgaataagtcttaggaagttgtgtacaacctgaatttatactgtggtgg Alignment from CESAR CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgg tttctgcagtgcactcctagggtgctcagttctcttctccactgtcacagCCGTTCATGCTAACCTCTCCTAGTCAGAGCCTGAGTCCAGACAGACAGCCACATGACCTAAGCATTGACATCTACAGCCGGACCTTGTTCTGGACCTGTGAGGCAACCAATGCCATTAATGTACACCGCCTGGATGGGGACGCCATGGGGGTGGTGCTAAGAGGAGACCATGACAAGCCAAGAGCCATAGCGGTCAATGCTGAACGAgggtgaataagtcttaggaagttgtgtacaacctgaatttatactgtggtgg Alignment from Spaln_aa2Genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG tttctgcagtgcactcctagggtgctcagttctcttctccactgtcacagCCGTTCATGCTAACCTCTCCTAGTCAGAGCCTGAGTCCAGACAGACAGCCACATGACCTAAGCATTGACATCTACAGCCGGACCTTGTTCTGGACCTGTGAGGCAACCAATGCCATTAATGTACACCGCCTGGATGGGGACGCCATGGGGGTGGTGCTAAGAGGAGACCATGACAAGCCAAGAGCCATAGCGGTCAATGCTGAACGAGGgtgaataagtcttaggaagttgtgtacaacctgaatttatactgtggtgg Alignment from Spaln_nt2Genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG tttctgcagtgcactcctagggtgctcagttctcttctccactgtcacagCCGTTCATGCTAACCTCTCCTAGTCAGAGCCTGAGTCCAGACAGACAGCCACATGACCTAAGCATTGACATCTACAGCCGGACCTTGTTCTGGACCTGTGAGGCAACCAATGCCATTAATGTACACCGCCTGGATGGGGACGCCATGGGGGTGGTGCTAAGAGGAGACCATGACAAGCCAAGAGCCATAGCGGTCAATGCTGAACGAGGgtgaataagtcttaggaagttgtgtacaacctgaatttatactgtggtgg Alignment from Pairagon CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG tttctgcagtgcactcctagggtgctcagttctcttctccactgtcacagCCGTTCATGCTAACCTCTCCTAGTCAGAGCCTGAGTCCAGACAGACAGCCACATGACCTAAGCATTGACATCTACAGCCGGACCTTGTTCTGGACCTGTGAGGCAACCAATGCCATTAATGTACACCGCCTGGATGGGGACGCCATGGGGGTGGTGCTAAGAGGAGACCATGACAAGCCAAGAGCCATAGCGGTCAATGCTGAACGAGGgtgaataagtcttaggaagttgtgtacaacctgaatttatactgtggtgg Alignment from Exonerate_protein2genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG tttctgcagtgcactcctagggtgctcagttctcttctccactgtcacagCCGTTCATGCTAACCTCTCCTAGTCAGAGCCTGAGTCCAGACAGACAGCCACATGACCTAAGCATTGACATCTACAGCCGGACCTTGTTCTGGACCTGTGAGGCAACCAATGCCATTAATGTACACCGCCTGGATGGGGACGCCATGGGGGTGGTGCTAAGAGGAGACCATGACAAGCCAAGAGCCATAGCGGTCAATGCTGAACGAGGgtgaataagtcttaggaagttgtgtacaacctgaatttatactgtggtgg Alignment from Exonerate_coding2genome tttctgcagtgcactcctagggtgctcagttctcttctccactgtcacagccgttcatgctaacctctcctagtcagagcctgagtccagacagacagccacatgacctaagcattgacatctacagccggaccttgttctggacctgtgaggcaaccaatgccattaatgtacaccgcctggatggggacgccatgggggtggtgctaagaggagaccatgacaagccaagagccatagcggtcaatgctgaacgagggtgaataagtcttaggaagttgtgtacaacctgaatttatactgtggtgg Alignment from GeneWise CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG tttctgcagtgcactcctagggtgctcagttctcttctccactgtcacagCCGTTCATGCTAACCTCTCCTAGTCAGAGCCTGAGTCCAGACAGACAGCCACATGACCTAAGCATTGACATCTACAGCCGGACCTTGTTCTGGACCTGTGAGGCAACCAATGCCATTAATGTACACCGCCTGGATGGGGACGCCATGGGGGTGGTGCTAAGAGGAGACCATGACAAGCCAAGAGCCATAGCGGTCAATGCTGAACGAGGgtgaataagtcttaggaagttgtgtacaacctgaatttatactgtggtgg #### Lrp5_ID122_4 --> 1 - 1 Original Alignment gCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCt catgatcacctgtcaccctatattagaaccactgtgctttgctcccacagtCAAAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGGTCCATTCATGCTTGCAAG---TGGAAAGGAGAGCAGAGAAAAGAAATCCTTGGTGCTCTCTATTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCAACAGCCTCCTtgtgagtggtgcaaacaaaagagaatagtactgcaaagagggatcattgta Alignment from CESAR gCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCt catgatcacctgtcaccctatattagaaccactgtgctttgctcccacagtCAAAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGGTCCATTCATGCTTGC---AAGTGGAAAGGAGAGCAGAGAAAAGAAATCCTTGGTGCTCTCTATTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCAACAGCCTCCTtgtgagtggtgcaaacaaaagagaatagtactgcaaagagggatcattgta Alignment from Spaln_aa2Genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatcacctgtcaccctatattagaaccactgtgctttgctcccacagTCAAAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGGTCCATTCATGCTTGC---AAGTGGAAAGGAGAGCAGAGAAAAGAAATCCTTGGTGCTCTCTATTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCAACAGCCTCCTTgtgagtggtgcaaacaaaagagaatagtactgcaaagagggatcattgta Alignment from Spaln_nt2Genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatcacctgtcaccctatattagaaccactgtgctttgctcccacagTCAAAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGGTCCATTCATGCTTGCAA---GTGGAAAGGAGAGCAGAGAAAAGAAATCCTTGGTGCTCTCTATTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCAACAGCCTCCTTgtgagtggtgcaaacaaaagagaatagtactgcaaagagggatcattgta Alignment from Pairagon GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatcacctgtcaccctatattagaaccactgtgctttgctcccacagTCAAAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGGTCCATTCATGCTTG---CAAGTGGAAAGGAGAGCAGAGAAAAGAAATCCTTGGTGCTCTCTATTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCAACAGCCTCCTTgtgagtggtgcaaacaaaagagaatagtactgcaaagagggatcattgta Alignment from Exonerate_protein2genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatcacctgtcaccctatattagaaccactgtgctttgctcccacagTCAAAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGGTCCATTCATGCTTGC---AAGTGGAAAGGAGAGCAGAGAAAAGAAATCCTTGGTGCTCTCTATTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCAACAGCCTCCTTgtgagtggtgcaaacaaaagagaatagtactgcaaagagggatcattgta Alignment from Exonerate_coding2genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatcacctgtcaccctatattagaaccactgtgctttgctcccacagTCAAAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGGTCCATTCATGCTTGC---AAGTGGAAAGGAGAGCAGAGAAAAGAAATCCTTGGTGCTCTCTATTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCAACAGCCTCCTTgtgagtggtgcaaacaaaagagaatagtactgcaaagagggatcattgta Alignment from GeneWise GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatcacctgtcaccctatattagaaccactgtgctttgctcccacagTCAAAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGGTCCATTCATGCTTGC---AAGTGGAAAGGAGAGCAGAGAAAAGAAATCCTTGGTGCTCTCTATTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCAACAGCCTCCTTgtgagtggtgcaaacaaaagagaatagtactgcaaagagggatcattgta #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagacATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTGTCTGCCCACCTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAggtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagacATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTGTCTGCCCACCTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAggtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTGTCTGCCCACCTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTGTCTGCCCACCTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTGTCTGCCCACCTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTGTCTGCCCACCTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from Exonerate_coding2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTGTCTGCCCACCTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG caggattgattgtttcttgtttcaagtgatgcctttgtgtctgcccacagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCTGGCTCTTTCCACTGTGTCTGCCCACCTGGTCATAGTCTAGGTCCTTTCCGCAAACAGTGTATAGgtaagctcaagaatgagtttggattgactaaaggggagcagatgggtggt #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagatTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAggtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagatTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAggtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagATTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAGgtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagATTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAGgtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagATTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAGgtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagATTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAGgtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from Exonerate_coding2genome atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagatttaaatgagtgcacaaagccccatctgtgtggtgatggtggcttctgcatcaatttcccaggccactacacatgcaactgttatcctggttacaggctaaaggcctccagaccaccaatctgggaaggtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgacaccagaccctctccttcctagcatgtgtgtcctctgcccagATTTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAATTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTAAAGGCCTCCAGACCACCAATCTGGGAAGgtaagatgtcatcctacttcccctcctatccttgttggatgagtgcattg #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcaccatacttgcattggaccatcatctgctttcttttgccttttcagatATTGATGAATGCCATGATCCTAGCACTTGCCCAGATGGAAAGTGTGAAAATAAACTTGGGAGCTTCAGGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGAGGGGGAACATGCCATggtaagggaagaccagtgtctccgttgtgtggcacagggttgctaggatcc Alignment from CESAR acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcaccatacttgcattggaccatcatctgctttcttttgccttttcagatATTGATGAATGCCATGATCCTAGCACTTGCCCAGATGGAAAGTGTGAAAATAAACTTGGGAGCTTCAGGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGAGGGGGAACATGCCATggtaagggaagaccagtgtctccgttgtgtggcacagggttgctaggatcc Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgcattggaccatcatctgctttcttttgccttttcagATATTGATGAATGCCATGATCCTAGCACTTGCCCAGATGGAAAGTGTGAAAATAAACTTGGGAGCTTCAGGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGAGGGGGAACATGCCATGgtaagggaagaccagtgtctccgttgtgtggcacagggttgctaggatcc Alignment from Spaln_nt2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgcattggaccatcatctgctttcttttgccttttcagATATTGATGAATGCCATGATCCTAGCACTTGCCCAGATGGAAAGTGTGAAAATAAACTTGGGAGCTTCAGGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGAGGGGGAACATGCCATGgtaagggaagaccagtgtctccgttgtgtggcacagggttgctaggatcc Alignment from Pairagon ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgcattggaccatcatctgctttcttttgccttttcagATATTGATGAATGCCATGATCCTAGCACTTGCCCAGATGGAAAGTGTGAAAATAAACTTGGGAGCTTCAGGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGAGGGGGAACATGCCATGgtaagggaagaccagtgtctccgttgtgtggcacagggttgctaggatcc Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgcattggaccatcatctgctttcttttgccttttcagATATTGATGAATGCCATGATCCTAGCACTTGCCCAGATGGAAAGTGTGAAAATAAACTTGGGAGCTTCAGGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGAGGGGGAACATGCCATGgtaagggaagaccagtgtctccgttgtgtggcacagggttgctaggatcc Alignment from Exonerate_coding2genome tggcaccatacttgcattggaccatcatctgctttcttttgccttttcagatattgatgaatgccatgatcctagcacttgcccagatggaaagtgtgaaaataaacttgggagcttcaggtgcattgcttgccagcctggctaccgaagccagggagggggaacatgccatggtaagggaagaccagtgtctccgttgtgtggcacagggttgctaggatcc Alignment from GeneWise ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccatacttgcattggaccatcatctgctttcttttgccttttcagATATTGATGAATGCCATGATCCTAGCACTTGCCCAGATGGAAAGTGTGAAAATAAACTTGGGAGCTTCAGGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGAGGGGGAACATGCCATGgtaagggaagaccagtgtctccgttgtgtggcacagggttgctaggatcc #### Ltbp3_ID1265_17 --> 2 - 1 Original Alignment acGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGg agtctttgttcatcgttcaatcagaagttctgtcttgctttttcctgcagatGTGGATGAGTGTGAAGCTGGGATAGTGTTCCGGGATGGTATCTGCACAAATACACCAGGTTCTTTCCAGTGCCAGTGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGggtaaaaaactgtcatccagcataagtttgtggcagtcctagatgtttgat Alignment from CESAR acGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGg agtctttgttcatcgttcaatcagaagttctgtcttgctttttcctgcagatGTGGATGAGTGTGAAGCTGGGATAGTGTTCCGGGATGGTATCTGCACAAATACACCAGGTTCTTTCCAGTGCCAGTGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGggtaaaaaactgtcatccagcataagtttgtggcagtcctagatgtttgat Alignment from Spaln_aa2Genome ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG agtctttgttcatcgttcaatcagaagttctgtcttgctttttcctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTTCCGGGATGGTATCTGCACAAATACACCAGGTTCTTTCCAGTGCCAGTGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtaaaaaactgtcatccagcataagtttgtggcagtcctagatgtttgat Alignment from Spaln_nt2Genome ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG agtctttgttcatcgttcaatcagaagttctgtcttgctttttcctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTTCCGGGATGGTATCTGCACAAATACACCAGGTTCTTTCCAGTGCCAGTGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtaaaaaactgtcatccagcataagtttgtggcagtcctagatgtttgat Alignment from Pairagon ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG agtctttgttcatcgttcaatcagaagttctgtcttgctttttcctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTTCCGGGATGGTATCTGCACAAATACACCAGGTTCTTTCCAGTGCCAGTGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtaaaaaactgtcatccagcataagtttgtggcagtcctagatgtttgat Alignment from Exonerate_protein2genome ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG agtctttgttcatcgttcaatcagaagttctgtcttgctttttcctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTTCCGGGATGGTATCTGCACAAATACACCAGGTTCTTTCCAGTGCCAGTGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtaaaaaactgtcatccagcataagtttgtggcagtcctagatgtttgat Alignment from Exonerate_coding2genome CACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAGACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTC----CAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG TCTTTGTTCATCGTTCAATCAGAAGTTCTGTCTTGCTTTTTCCTGC--AGATGTGGATGAGTGTGAAGCTGGGATAGTGTTCCGGGATGGTATCTGCACAAATACACCAGG----TTCTTTCCAGTGCCAGTGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtaaaaaactgtcatccagcataagtttgtggcagtcctagatgtttgat Alignment from GeneWise ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG agtctttgttcatcgttcaatcagaagttctgtcttgctttttcctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTTCCGGGATGGTATCTGCACAAATACACCAGGTTCTTTCCAGTGCCAGTGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtaaaaaactgtcatccagcataagtttgtggcagtcctagatgtttgat #### Ltbp3_ID1266_18 --> 2 - 1 Original Alignment acATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAg gctgctgtggtctttaagacaattgatcatttgtctttcttttctcttagacATTGATGAATGTGATTTCCCTGCTGCTAGCATTGGGGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGATTGGCGGCAGAAAGTGCCAGggttggtgatggtaacagatcccagtctgcctctgagagccaaagcagagc Alignment from CESAR acATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAg gctgctgtggtctttaagacaattgatcatttgtctttcttttctcttagacATTGATGAATGTGATTTCCCTGCTGCTAGCATTGGGGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGATTGGCGGCAGAAAGTGCCAGggttggtgatggtaacagatcccagtctgcctctgagagccaaagcagagc Alignment from Spaln_aa2Genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG gctgctgtggtctttaagacaattgatcatttgtctttcttttctcttagACATTGATGAATGTGATTTCCCTGCTGCTAGCATTGGGGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGATTGGCGGCAGAAAGTGCCAGGgttggtgatggtaacagatcccagtctgcctctgagagccaaagcagagc Alignment from Spaln_nt2Genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG gctgctgtggtctttaagacaattgatcatttgtctttcttttctcttagACATTGATGAATGTGATTTCCCTGCTGCTAGCATTGGGGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGATTGGCGGCAGAAAGTGCCAGGgttggtgatggtaacagatcccagtctgcctctgagagccaaagcagagc Alignment from Pairagon ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG gctgctgtggtctttaagacaattgatcatttgtctttcttttctcttagACATTGATGAATGTGATTTCCCTGCTGCTAGCATTGGGGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGATTGGCGGCAGAAAGTGCCAGGgttggtgatggtaacagatcccagtctgcctctgagagccaaagcagagc Alignment from Exonerate_protein2genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG gctgctgtggtctttaagacaattgatcatttgtctttcttttctcttagACATTGATGAATGTGATTTCCCTGCTGCTAGCATTGGGGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGATTGGCGGCAGAAAGTGCCAGGgttggtgatggtaacagatcccagtctgcctctgagagccaaagcagagc Alignment from Exonerate_coding2genome gctgctgtggtctttaagacaattgatcatttgtctttcttttctcttagacattgatgaatgtgatttccctgctgctagcattgggggtgattgcatcaatgcaaatggttcctacagatgtctctgtcctcaggggcatcggttgattggcggcagaaagtgccagggttggtgatggtaacagatcccagtctgcctctgagagccaaagcagagc Alignment from GeneWise ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG gctgctgtggtctttaagacaattgatcatttgtctttcttttctcttagACATTGATGAATGTGATTTCCCTGCTGCTAGCATTGGGGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGATTGGCGGCAGAAAGTGCCAGGgttggtgatggtaacagatcccagtctgcctctgagagccaaagcagagc #### Ltbp3_ID1267_19 --> 2 - 1 Original Alignment atATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGg cctgtgttagcaggctaacacactactgaattgatttttcccttttctagacATTGAAAAGTGCAGTCAGGATGCAGGCCTGTGCTTGCCTCATGGGACCTGTGAAAATCTTAAAGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACACTTATACAAGACCAGCATGGTTGTGAGggtgcgttgtgagagtgagaagcttcgctgctctgccaccagttactggag Alignment from CESAR atATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGg cctgtgttagcaggctaacacactactgaattgatttttcccttttctagacATTGAAAAGTGCAGTCAGGATGCAGGCCTGTGCTTGCCTCATGGGACCTGTGAAAATCTTAAAGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACACTTATACAAGACCAGCATGGTTGTGAGggtgcgttgtgagagtgagaagcttcgctgctctgccaccagttactggag Alignment from Spaln_aa2Genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG cctgtgttagcaggctaacacactactgaattgatttttcccttttctagACATTGAAAAGTGCAGTCAGGATGCAGGCCTGTGCTTGCCTCATGGGACCTGTGAAAATCTTAAAGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACACTTATACAAGACCAGCATGGTTGTGAGGgtgcgttgtgagagtgagaagcttcgctgctctgccaccagttactggag Alignment from Spaln_nt2Genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG cctgtgttagcaggctaacacactactgaattgatttttcccttttctagACATTGAAAAGTGCAGTCAGGATGCAGGCCTGTGCTTGCCTCATGGGACCTGTGAAAATCTTAAAGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACACTTATACAAGACCAGCATGGTTGTGAGGgtgcgttgtgagagtgagaagcttcgctgctctgccaccagttactggag Alignment from Pairagon ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG cctgtgttagcaggctaacacactactgaattgatttttcccttttctagACATTGAAAAGTGCAGTCAGGATGCAGGCCTGTGCTTGCCTCATGGGACCTGTGAAAATCTTAAAGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACACTTATACAAGACCAGCATGGTTGTGAGGgtgcgttgtgagagtgagaagcttcgctgctctgccaccagttactggag Alignment from Exonerate_protein2genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG cctgtgttagcaggctaacacactactgaattgatttttcccttttctagACATTGAAAAGTGCAGTCAGGATGCAGGCCTGTGCTTGCCTCATGGGACCTGTGAAAATCTTAAAGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACACTTATACAAGACCAGCATGGTTGTGAGGgtgcgttgtgagagtgagaagcttcgctgctctgccaccagttactggag Alignment from Exonerate_coding2genome cctgtgttagcaggctaacacactactgaattgatttttcccttttctagacattgaaaagtgcagtcaggatgcaggcctgtgcttgcctcatgggacctgtgaaaatcttaaagggtcttatgttctggtctgggatgagggtttcacacttatacaagaccagcatggttgtgagggtgcgttgtgagagtgagaagcttcgctgctctgccaccagttactggag Alignment from GeneWise ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG cctgtgttagcaggctaacacactactgaattgatttttcccttttctagACATTGAAAAGTGCAGTCAGGATGCAGGCCTGTGCTTGCCTCATGGGACCTGTGAAAATCTTAAAGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACACTTATACAAGACCAGCATGGTTGTGAGGgtgcgttgtgagagtgagaagcttcgctgctctgccaccagttactggag #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagacACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTTTAGAGTGTGTAggttggttagactacttttccaatcaaggaaaacagctgtttattttctaa Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagacACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTTTAGAGTGTGTAggttggttagactacttttccaatcaaggaaaacagctgtttaacccctgc Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagACACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTTTAGAGTGTGTAGgttggttagactacttttccaatcaaggaaaacagctgtttattttctaa Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagACACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTTTAGAGTGTGTAGgttggttagactacttttccaatcaaggaaaacagctgtttattttctaa Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagACACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTTTAGAGTGTGTAGgttggttagactacttttccaatcaaggaaaacagctgtttattttctaa Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagACACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTTTAGAGTGTGTAGgttggttagactacttttccaatcaaggaaaacagctgtttattttctaa Alignment from Exonerate_coding2genome aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagacactgatgaatgcatattgtttggggcagagatctgtaaggagggtaaattcgtgaacatgcagcctggctatgagtgctattgcaagcagggcttctatttcgatggtaatcttttagagtgtgtaggttggttagactacttttccaatcaaggaaaacagctgtttattttctaa Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG aaatctgagtgttagcccactggcacctcagccggtgctcctctccacagACACTGATGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGTAAATTCGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTTTAGAGTGTGTAGgttggttagactacttttccaatcaaggaaaacagctgtttattttctaa #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagatGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCTCCCGTGCCCGTCGAGTAggtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagatGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCTCCCGTGCCCGTCGAGTAggtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from Spaln_aa2Genome TCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG tgcaaagcctatgataggctaacattttgtatttctttca gATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCTCCCGTGCCCGTCGAGTAGgtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from Spaln_nt2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCTCCCGTGCCCGTCGAGTAGgtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCTCCCGTGCCCGTCGAGTAGgtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from Exonerate_protein2genome CTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtaattgcatgcaaagcctatgataggctaacattttgtatTTCTTTCAGATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCTCCCGTGCCCGTCGAGTAGgtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from Exonerate_coding2genome gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagatgaagacagctcagaggaagattcagatgagtgccgttgtgtcattgggcactgtgccccgcgtcccggtggggctgtatgtgagtgtcctggtggtttcccactggatgcctcccgtgcccgtcgagtaggtaattaggacattaggggccagatgggggtggaagacatcatggaccta Alignment from GeneWise ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG gtaattgcatgcaaagcctatgataggctaacattttgtatttctttcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCCCCGCGTCCCGGTGGGGCTGTATGTGAGTGTCCTGGTGGTTTCCCACTGGATGCCTCCCGTGCCCGTCGAGTAGgtaattaggacattaggggccagatgggggtggaagacatcatggaccta #### Lzts2_ID9277_3 --> 0 - 0 Original Alignment GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG aggtggagtgcattgttatatgctgttacaattatccttatttcccgtagGCATTTGGAGCCCAGAAG------CAGTCGAGAGATCAAGGTGAGGTTTGTGCACCGCAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAACACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGTGCCACCTTTGAACGGGAGCAACAAAAACTGGGGCCACAGCTGGAAGAAACTAAGTGGGAAgtaagtatcagggaaagtagtagggttcctggatacagatctggttctgt Alignment from CESAR GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG aggtggagtgcattgttatatgctgttacaattatccttatttcccgtagGCATTTGGAGCCCAGAAGCAG------TCGAGAGATCAAGGTGAGGTTTGTGCACCGCAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAACACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGTGCCACCTTTGAACGGGAGCAACAAAAACTGGGGCCACAGCTGGAAGAAACTAAGTGGGAAgtaagtatcagggaaagtagtagggttcctggatacagatctggttctgt Alignment from Spaln_aa2Genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG aggtggagtgcattgttatatgctgttacaattatccttatttcccgtagGCATTTGGAGCCCAGAAGCAG------TCGAGAGATCAAGGTGAGGTTTGTGCACCGCAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAACACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGTGCCACCTTTGAACGGGAGCAACAAAAACTGGGGCCACAGCTGGAAGAAACTAAGTGGGAAgtaagtatcagggaaagtagtagggttcctggatacagatctggttctgt Alignment from Spaln_nt2Genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG aggtggagtgcattgttatatgctgttacaattatccttatttcccgtagGCATTTGGAGCCCAGAAGC------AGTCGAGAGATCAAGGTGAGGTTTGTGCACCGCAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAACACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGTGCCACCTTTGAACGGGAGCAACAAAAACTGGGGCCACAGCTGGAAGAAACTAAGTGGGAAgtaagtatcagggaaagtagtagggttcctggatacagatctggttctgt Alignment from Pairagon GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG aggtggagtgcattgttatatgctgttacaattatccttatttcccgtaggcatttggagcccagaagcagtcgagagatcaaggtgaggtttgtgcaccgcaggctgacaaagcaacacagcatgtgtcacag------------------------------------------------------------------------------------------GCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAACACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGTGCCACCTTTGAACGGGAGCAACAAAAACTGGGGCCACAGCTGGAAGAAACTAAGTGGGAAgtaagtatcagggaaagtagtagggttcctggatacagatctggttctgt Alignment from Exonerate_protein2genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG aggtggagtgcattgttatatgctgttacaattatccttatttcccgtagGCATTTGGAGCCCAGAAGCAG------TCGAGAGATCAAGGTGAGGTTTGTGCACCGCAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAACACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGTGCCACCTTTGAACGGGAGCAACAAAAACTGGGGCCACAGCTGGAAGAAACTAAGTGGGAAgtaagtatcagggaaagtagtagggttcctggatacagatctggttctgt Alignment from Exonerate_coding2genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG aggtggagtgcattgttatatgctgttacaattatccttatttcccgtagGCATTTGGAGCCCAGAAGCAG------TCGAGAGATCAAGGTGAGGTTTGTGCACCGCAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAACACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGTGCCACCTTTGAACGGGAGCAACAAAAACTGGGGCCACAGCTGGAAGAAACTAAGTGGGAAgtaagtatcagggaaagtagtagggttcctggatacagatctggttctgt Alignment from GeneWise GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG aggtggagtgcattgttatatgctgttacaattatccttatttcccgtagGCATTTGGAGCCCAGAAGCAGTCG------AGAGATCAAGGTGAGGTTTGTGCACCGCAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAACACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGTGCCACCTTTGAACGGGAGCAACAAAAACTGGGGCCACAGCTGGAAGAAACTAAGTGGGAAgtaagtatcagggaaagtagtagggttcctggatacagatctggttctgt #### Macrod1_ID2045_4 --> 2 - 1 Original Alignment ccAACAGCTCCCTGCTTGGAGGCGGAGGGg ggcccttccttcacctgttgtttcatctgctagcatttaaaattgttaagcaAACAGCACCCTACTTGGGAGTGGTGGGggtaggatccagctgggctgaactagttgggaagggcttgagtagaggagc Alignment from CESAR ccAACAGCTCCCTGCTTGGAGGCGGAGGGg ggcccttccttcacctgttgtttcatctgctagcatttaaaattgttaagcaAACAGCACCCTACTTGGGAGTGGTGGGggtaggatccagctgggctgaactagttgggaagggcttgagtagaggagc Alignment from Spaln_aa2Genome CCAACAGCTCCCTGCTTGGAGGCGGAGGGG ggcccttccttcacctgttgtttcatctgctagcatttaaaattgttaagCAAACAGCACCCTACTTGGGAGTGGTGGGGgtaggatccagctgggctgaactagttgggaagggcttgagtagaggagc Alignment from Spaln_nt2Genome CCAACAGCTCCCTGCTTGGAGGCGGAGGGG ggcccttccttcacctgttgtttcatctgctagcatttaaaattgttaagCAAACAGCACCCTACTTGGGAGTGGTGGGGgtaggatccagctgggctgaactagttgggaagggcttgagtagaggagc Alignment from Pairagon CCAACAGCTCCCTGCTTGGAGGCGGAGGGG ggcccttccttcacctgttgtttcatctgctagcatttaaaattgttaagCAAACAGCACCCTACTTGGGAGTGGTGGGGgtaggatccagctgggctgaactagttgggaagggcttgagtagaggagc Alignment from Exonerate_protein2genome CCAACAGCTCCCTGCTTGGAGGCGGAGGGG ggcccttccttcacctgttgtttcatctgctagcatttaaaattgttaagCAAACAGCACCCTACTTGGGAGTGGTGGGGgtaggatccagctgggctgaactagttgggaagggcttgagtagaggagc Alignment from Exonerate_coding2genome ggcccttccttcacctgttgtttcatctgctagcatttaaaattgttaagcaaacagcaccctacttgggagtggtgggggtaggatccagctgggctgaactagttgggaagggcttgagtagaggagc Alignment from GeneWise ggcccttccttcacctgttgtttcatctgctagcatttaaaattgttaagcaaacagcaccctacttgggagtggtgggggtaggatccagctgggctgaactagttgggaagggcttgagtagaggagc #### Macrod1_ID2052_7 --> 0 - 1 Original Alignment GCTTTCCCGTGCATCTCCACAGGCGTGTTTg aaatacagagaaactatacgtgtctctgacagcctgcctatctttcttagACGTATCCCTGCATTTCCACAGGGGTAATTagtaacctgagggggccctggaacatggaataaaagaagactgaggtggtg Alignment from CESAR GCTTTCCCGTGCATCTCCACAGGCGTGTTTg aaatacagagaaactatacgtgtctctgacagcctgcctatctttcttagACGTATCCCTGCATTTCCACAGGGGTAATTagtaacctgagggggccctggaacatggaataaaagaagactgaggtggtg Alignment from Spaln_aa2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaatacagagaaactatacgtgtctctgacagcctgcctatctttcttagACGTATCCCTGCATTTCCACAGGGGTAATTAgtaacctgagggggccctggaacatggaataaaagaagactgaggtggtg Alignment from Spaln_nt2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaatacagagaaactatacgtgtctctgacagcctgcctatctttcttagACGTATCCCTGCATTTCCACAGGGGTAATTAgtaacctgagggggccctggaacatggaataaaagaagactgaggtggtg Alignment from Pairagon aaatacagagaaactatacgtgtctctgacagcctgcctatctttcttagacgtatccctgcatttccacaggggtaattagtaacctgagggggccctggaacatggaataaaagaagactgaggtggtg Alignment from Exonerate_protein2genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaatacagagaaactatacgtgtctctgacagcctgcctatctttcttagACGTATCCCTGCATTTCCACAGGGGTAATTAgtaacctgagggggccctggaacatggaataaaagaagactgaggtggtg Alignment from Exonerate_coding2genome aaatacagagaaactatacgtgtctctgacagcctgcctatctttcttagacgtatccctgcatttccacaggggtaattagtaacctgagggggccctggaacatggaataaaagaagactgaggtggtg Alignment from GeneWise ----CT aaatacagagaaactatacgtgtctctgacagcctgcctatctttcttagacgtatccctgcatttccacaggggtaattagtaacctgagggggccctggaacatggaataaaagaagactgagGTGGTG #### March5_ID7301_3 --> 2 - 0 Original Alignment gtCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG agtactaatgtatgcccatcaagccatattttttttcactttttttttaggcTTGGTCATCTATGTCTTAGATCTGGCAGATAAACTGATCTCCAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGAGCTATCTACTGGACAGCTGTAACTTATGGGGCTGTAACTGTGATGCAGgtgaggaaactgtactgtgaaaaccttggttctttaacatcatgtttcac Alignment from CESAR gtCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG agtactaatgtatgcccatcaagccatattttttttcactttttttttaggcTTGGTCATCTATGTCTTAGATCTGGCAGATAAACTGATCTCCAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGAGCTATCTACTGGACAGCTGTAACTTATGGGGCTGTAACTGTGATGCAGgtgaggaaactgtactgtgaaaaccttggttctttaacatcatgtttcac Alignment from Spaln_aa2Genome GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG agtactaatgtatgcccatcaagccatattttttttcactttttttttagGCTTGGTCATCTATGTCTTAGATCTGGCAGATAAACTGATCTCCAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGAGCTATCTACTGGACAGCTGTAACTTATGGGGCTGTAACTGTGATGCAGgtgaggaaactgtactgtgaaaaccttggttctttaacatcatgtttcac Alignment from Spaln_nt2Genome GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG agtactaatgtatgcccatcaagccatattttttttcactttttttttagGCTTGGTCATCTATGTCTTAGATCTGGCAGATAAACTGATCTCCAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGAGCTATCTACTGGACAGCTGTAACTTATGGGGCTGTAACTGTGATGCAGgtgaggaaactgtactgtgaaaaccttggttctttaacatcatgtttcac Alignment from Pairagon GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG agtactaatgtatgcccatcaagccatattttttttcactttttttttagGCTTGGTCATCTATGTCTTAGATCTGGCAGATAAACTGATCTCCAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGAGCTATCTACTGGACAGCTGTAACTTATGGGGCTGTAACTGTGATGCAGgtgaggaaactgtactgtgaaaaccttggttctttaacatcatgtttcac Alignment from Exonerate_protein2genome GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG agtactaatgtatgcccatcaagccatattttttttcactttttttttagGCTTGGTCATCTATGTCTTAGATCTGGCAGATAAACTGATCTCCAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGAGCTATCTACTGGACAGCTGTAACTTATGGGGCTGTAACTGTGATGCAGgtgaggaaactgtactgtgaaaaccttggttctttaacatcatgtttcac Alignment from Exonerate_coding2genome GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG agtactaatgtatgcccatcaagccatattttttttcactttttttttagGCTTGGTCATCTATGTCTTAGATCTGGCAGATAAACTGATCTCCAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGAGCTATCTACTGGACAGCTGTAACTTATGGGGCTGTAACTGTGATGCAGgtgaggaaactgtactgtgaaaaccttggttctttaacatcatgtttcac Alignment from GeneWise GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG agtactaatgtatgcccatcaagccatattttttttcactttttttttagGCTTGGTCATCTATGTCTTAGATCTGGCAGATAAACTGATCTCCAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGAGCTATCTACTGGACAGCTGTAACTTATGGGGCTGTAACTGTGATGCAGgtgaggaaactgtactgtgaaaaccttggttctttaacatcatgtttcac #### Mark2_ID2105_16 --> 1 - 2 Original Alignment cACAGCCCCCCAGCGCGTCCCTGTCGCCTCCCCCTCCGCCCACAACATCAGCAGCAGTAGTGGAGCCCCAGACCGAACTAATTTCCCACGGGGTGTGTCCAGTCGAAGCACCTTCCATGCTGGGCAGCTCCGACAGGTGCGGGACCAGCAGAATCTACCCTACGGTGTGACCCCAGCCTCTCCCTCTGGCCATAGCCAGGGCCGGCGGGGGGCCTCTGGCAGCATCTTCAGCAAGTTCACCTCCAAGTTTGTCCGCag cagaatcttgttcacaagccccagtgtgattccacctctctgttggacagcATGGCACCCCAGTGTGTCCCTGTTGCCTCCCCCTCTGCCCATAACAACAGCAGCACTATTGGTGCGCCTGACAGAACTAATTTCCCACGTGGTGTGTCCAGTCGAAGCACATTCCATACAGGACAGCTCCGACACGTGTGGGACCAGCAGAATCTACCCTATGGTGGAACACCAGCCTCCCCATCTGGCCATGGTCAGAGCAGGCGGGGGGCCTCTGGCAGCATCTTTAGCAAATTCACCTCCAAATTTGTCTGCcggtaaggggaagtgtgcagacatgtaggggatgaaagcattcagtacttgg Alignment from CESAR cACAGCCCCCCAGCGCGTCCCTGTCGCCTCCCCCTCCGCCCACAACATCAGCAGCAGTAGTGGAGCCCCAGACCGAACTAATTTCCCACGGGGTGTGTCCAGTCGAAGCACCTTCCATGCTGGGCAGCTCCGACAGGTGCGGGACCAGCAGAATCTACCCTACGGTGTGACCCCAGCCTCTCCCTCTGGCCATAGCCAGGGCCGGCGGGGGGCCTCTGGCAGCATCTTCAGCAAGTTCACCTCCAAGTTTGTCCGCag cagaatcttgttcacaagccccagtgtgattccacctctctgttggacagcATGGCACCCCAGTGTGTCCCTGTTGCCTCCCCCTCTGCCCATAACAACAGCAGCACTATTGGTGCGCCTGACAGAACTAATTTCCCACGTGGTGTGTCCAGTCGAAGCACATTCCATACAGGACAGCTCCGACACGTGTGGGACCAGCAGAATCTACCCTATGGTGGAACACCAGCCTCCCCATCTGGCCATGGTCAGAGCAGGCGGGGGGCCTCTGGCAGCATCTTTAGCAAATTCACCTCCAAATTTGTCTGCcggtaaggggaagtgtgcagacatgtaggggatgaaagcattcagtacttgg Alignment from Spaln_aa2Genome CACAGCCCCCCAGCGCGTCCCTGTCGCCTCCCCCTCCGCCCACAACATCAGCAGCAGTAGTGGAGCCCCAGACCGAACTAATTTCCCACGGGGTGTGTCCAGTCGAAGCACCTTCCATGCTGGGCAGCTCCGACAGGTGCGGGACCAGCAGAATCTACCCTACGGTGTGACCCCAGCCTCTCCCTCTGGCCATAGCCAGGGCCGGCGGGGGGCCTCTGGCAGCATCTTCAGCAAGTTCACCTCCAAGTTTGTCCGCAG cagaatcttgttcacaagccccagtgtgattccacctctctgttggacagCATGGCACCCCAGTGTGTCCCTGTTGCCTCCCCCTCTGCCCATAACAACAGCAGCACTATTGGTGCGCCTGACAGAACTAATTTCCCACGTGGTGTGTCCAGTCGAAGCACATTCCATACAGGACAGCTCCGACACGTGTGGGACCAGCAGAATCTACCCTATGGTGGAACACCAGCCTCCCCATCTGGCCATGGTCAGAGCAGGCGGGGGGCCTCTGGCAGCATCTTTAGCAAATTCACCTCCAAATTTGTCTGCCGgtaaggggaagtgtgcagacatgtaggggatgaaagcattcagtacttgg Alignment from Spaln_nt2Genome CACAGCCCCCCAGCGCGTCCCTGTCGCCTCCCCCTCCGCCCACAACATCAGCAGCAGTAGTGGAGCCCCAGACCGAACTAATTTCCCACGGGGTGTGTCCAGTCGAAGCACCTTCCATGCTGGGCAGCTCCGACAGGTGCGGGACCAGCAGAATCTACCCTACGGTGTGACCCCAGCCTCTCCCTCTGGCCATAGCCAGGGCCGGCGGGGGGCCTCTGGCAGCATCTTCAGCAAGTTCACCTCCAAGTTTGTCCGCAG cagaatcttgttcacaagccccagtgtgattccacctctctgttggacagCATGGCACCCCAGTGTGTCCCTGTTGCCTCCCCCTCTGCCCATAACAACAGCAGCACTATTGGTGCGCCTGACAGAACTAATTTCCCACGTGGTGTGTCCAGTCGAAGCACATTCCATACAGGACAGCTCCGACACGTGTGGGACCAGCAGAATCTACCCTATGGTGGAACACCAGCCTCCCCATCTGGCCATGGTCAGAGCAGGCGGGGGGCCTCTGGCAGCATCTTTAGCAAATTCACCTCCAAATTTGTCTGCCGgtaaggggaagtgtgcagacatgtaggggatgaaagcattcagtacttgg Alignment from Pairagon CACAGCCCCCCAGCGCGTCCCTGTCGCCTCCCCCTCCGCCCACAACATCAGCAGCAGTAGTGGAGCCCCAGACCGAACTAATTTCCCACGGGGTGTGTCCAGTCGAAGCACCTTCCATGCTGGGCAGCTCCGACAGGTGCGGGACCAGCAGAATCTACCCTACGGTGTGACCCCAGCCTCTCCCTCTGGCCATAGCCAGGGCCGGCGGGGGGCCTCTGGCAGCATCTTCAGCAAGTTCACCTCCAAGTTTGTCCGCAG cagaatcttgttcacaagccccagtgtgattccacctctctgttggacagCATGGCACCCCAGTGTGTCCCTGTTGCCTCCCCCTCTGCCCATAACAACAGCAGCACTATTGGTGCGCCTGACAGAACTAATTTCCCACGTGGTGTGTCCAGTCGAAGCACATTCCATACAGGACAGCTCCGACACGTGTGGGACCAGCAGAATCTACCCTATGGTGGAACACCAGCCTCCCCATCTGGCCATGGTCAGAGCAGGCGGGGGGCCTCTGGCAGCATCTTTAGCAAATTCACCTCCAAATTTGTCTGCCGgtaaggggaagtgtgcagacatgtaggggatgaaagcattcagtacttgg Alignment from Exonerate_protein2genome CACAGCCCCCCAGCGCGTCCCTGTCGCCTCCCCCTCCGCCCACAACATCAGCAGCAGTAGTGGAGCCCCAGACCGAACTAATTTCCCACGGGGTGTGTCCAGTCGAAGCACCTTCCATGCTGGGCAGCTCCGACAGGTGCGGGACCAGCAGAATCTACCCTACGGTGTGACCCCAGCCTCTCCCTCTGGCCATAGCCAGGGCCGGCGGGGGGCCTCTGGCAGCATCTTCAGCAAGTTCACCTCCAAGTTTGTCCGCAG cagaatcttgttcacaagccccagtgtgattccacctctctgttggacagCATGGCACCCCAGTGTGTCCCTGTTGCCTCCCCCTCTGCCCATAACAACAGCAGCACTATTGGTGCGCCTGACAGAACTAATTTCCCACGTGGTGTGTCCAGTCGAAGCACATTCCATACAGGACAGCTCCGACACGTGTGGGACCAGCAGAATCTACCCTATGGTGGAACACCAGCCTCCCCATCTGGCCATGGTCAGAGCAGGCGGGGGGCCTCTGGCAGCATCTTTAGCAAATTCACCTCCAAATTTGTCTGCCGgtaaggggaagtgtgcagacatgtaggggatgaaagcattcagtacttgg Alignment from Exonerate_coding2genome CACAGCCCCCCAGCGCGTCCCTGTCGCCTCCCCCTCCGCCCACAACATCAGCAGCAGTAGTGGAGCCCCAGACCGAACTAATTTCCCACGGGGTGTGTCCAGTCGAAGCACCTTCCATGCTGGGCAGCTCCGACAGGTGCGGGACCAGCAGAATCTACCCTACGGTGTGACCCCAGCCTCTCCCTCTGGCCATAGCCAGGGCCGGCGGGGGGCCTCTGGCAGCATCTTCAGCAAGTTCACCTCCAAGTTTGTCCGCAG cagaatcttgttcacaagccccagtgtgattccacctctctgttggacagCATGGCACCCCAGTGTGTCCCTGTTGCCTCCCCCTCTGCCCATAACAACAGCAGCACTATTGGTGCGCCTGACAGAACTAATTTCCCACGTGGTGTGTCCAGTCGAAGCACATTCCATACAGGACAGCTCCGACACGTGTGGGACCAGCAGAATCTACCCTATGGTGGAACACCAGCCTCCCCATCTGGCCATGGTCAGAGCAGGCGGGGGGCCTCTGGCAGCATCTTTAGCAAATTCACCTCCAAATTTGTCTGCCGgtaaggggaagtgtgcagacatgtaggggatgaaagcattcagtacttgg Alignment from GeneWise CACAGCCCCCCAGCGCGTCCCTGTCGCCTCCCCCTCCGCCCACAACATCAGCAGCAGTAGTGGAGCCCCAGACCGAACTAATTTCCCACGGGGTGTGTCCAGTCGAAGCACCTTCCATGCTGGGCAGCTCCGACAGGTGCGGGACCAGCAGAATCTACCCTACGGTGTGACCCCAGCCTCTCCCTCTGGCCATAGCCAGGGCCGGCGGGGGGCCTCTGGCAGCATCTTCAGCAAGTTCACCTCCAAGTTTGTCCGCAG cagaatcttgttcacaagccccagtgtgattccacctctctgttggacagCATGGCACCCCAGTGTGTCCCTGTTGCCTCCCCCTCTGCCCATAACAACAGCAGCACTATTGGTGCGCCTGACAGAACTAATTTCCCACGTGGTGTGTCCAGTCGAAGCACATTCCATACAGGACAGCTCCGACACGTGTGGGACCAGCAGAATCTACCCTATGGTGGAACACCAGCCTCCCCATCTGGCCATGGTCAGAGCAGGCGGGGGGCCTCTGGCAGCATCTTTAGCAAATTCACCTCCAAATTTGTCTGCCGgtaaggggaagtgtgcagacatgtaggggatgaaagcattcagtacttgg #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag cccatctgactcttaactcagcaggttttttaattcccgtcctttttcagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACAGAGAGTAACTGTGAGGTGCCTCAGCCCaggtaagtctacagagatacttatacatctatggcaccatgctggacactca Alignment from CESAR cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag cccatctgactcttaactcagcaggttttttaattcccgtcctttttcagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACAGAGAGTAACTGTGAGGTGCCTCAGCCCaggtaagtctacagagatacttatacatctatggcaccatgctggacactca Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccatctgactcttaactcagcaggttttttaattcccgtcctttttcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACAGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtctacagagatacttatacatctatggcaccatgctggacactca Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccatctgactcttaactcagcaggttttttaattcccgtcctttttcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACAGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtctacagagatacttatacatctatggcaccatgctggacactca Alignment from Pairagon CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccatctgactcttaactcagcaggttttttaattcccgtcctttttcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACAGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtctacagagatacttatacatctatggcaccatgctggacactca Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccatctgactcttaactcagcaggttttttaattcccgtcctttttcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACAGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtctacagagatacttatacatctatggcaccatgctggacactca Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccatctgactcttaactcagcaggttttttaattcccgtcctttttcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACAGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtctacagagatacttatacatctatggcaccatgctggacactca Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG cccatctgactcttaactcagcaggttttttaattcccgtcctttttcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACAGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtctacagagatacttatacatctatggcaccatgctggacactca #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggacatttttcaataaaatacgtagctGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGACTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACGAGCCCATTGCCGGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtcagtcctacagttactctcccagagactaagtgcactactttagaggc Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggacatttttcaataaaatacgtagctGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGACTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACGAGCCCATTGCCGGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtcagtcctacagttactctcccagagactaagtgcactactttagaggc Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggacatttttcaataaaatacgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGACTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACGAGCCCATTGCCGGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtcagtcctacagttactctcccagagactaagtgcactactttagaggc Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggacatttttcaataaaatacgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGACTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACGAGCCCATTGCCGGGCCTGGATAGGAAGAAG---ACTACTGCACCATCTACAgtcagtcctacagttactctcccagagactaagtgcactactttagaggc Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggacatttttcaataaaatacgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGACTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACGAGCCCATTGCCGGGCCTGGATAGGAAGAAGACTA---CTGCACCATCTACAgtcagtcctacagttactctcccagagactaagtgcactactttagaggc Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggacatttttcaataaaatacgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGACTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACGAGCCCATTGCCGGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtcagtcctacagttactctcccagagactaagtgcactactttagaggc Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggacatttttcaataaaatacgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGACTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACGAGCCCATTGCCGGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtcagtcctacagttactctcccagagactaagtgcactactttagaggc Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggacatttttcaataaaatacgtagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGACTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACGAGCCCATTGCCGGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtcagtcctacagttactctcccagagactaagtgcactactttagaggc #### Mark2_ID2109_12 --> 0 - 1 Original Alignment CTGGAAGGTGATACCATCACTTTGAAGCCCCGGCCTTCAGCTGATCTAACCAACAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGCAGCGTCTCTGCCAACCCCAAGCAACGACGCTCCAGTGACCAGg gctaatatgcaactatgctggatattgacagccacccttgctgcctgcagCTTGAGGGAGATACCATCACTCTGAGGCCCCGTCCTTCTGGTGGTCTCACTAATAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGAAGTGTTTCTGCCAACTCCAGGCAACGGCGTTCAAGTGATCAAtgtgagtctcccagaccgtttcatggatacccccaggtgctgtaggagctc Alignment from CESAR CTGGAAGGTGATACCATCACTTTGAAGCCCCGGCCTTCAGCTGATCTAACCAACAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGCAGCGTCTCTGCCAACCCCAAGCAACGACGCTCCAGTGACCAGg gctaatatgcaactatgctggatattgacagccacccttgctgcctgcagCTTGAGGGAGATACCATCACTCTGAGGCCCCGTCCTTCTGGTGGTCTCACTAATAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGAAGTGTTTCTGCCAACTCCAGGCAACGGCGTTCAAGTGATCAAtgtgagtctcccagaccgtttcatggatacccccaggtgctgtaggagctc Alignment from Spaln_aa2Genome CTGGAAGGTGATACCATCACTTTGAAGCCCCGGCCTTCAGCTGATCTAACCAACAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGCAGCGTCTCTGCCAACCCCAAGCAACGACGCTCCAGTGACCAGG gctaatatgcaactatgctggatattgacagccacccttgctgcctgcagCTTGAGGGAGATACCATCACTCTGAGGCCCCGTCCTTCTGGTGGTCTCACTAATAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGAAGTGTTTCTGCCAACTCCAGGCAACGGCGTTCAAGTGATCAATgtgagtctcccagaccgtttcatggatacccccaggtgctgtaggagctc Alignment from Spaln_nt2Genome CTGGAAGGTGATACCATCACTTTGAAGCCCCGGCCTTCAGCTGATCTAACCAACAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGCAGCGTCTCTGCCAACCCCAAGCAACGACGCTCCAGTGACCAGG gctaatatgcaactatgctggatattgacagccacccttgctgcctgcagCTTGAGGGAGATACCATCACTCTGAGGCCCCGTCCTTCTGGTGGTCTCACTAATAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGAAGTGTTTCTGCCAACTCCAGGCAACGGCGTTCAAGTGATCAATgtgagtctcccagaccgtttcatggatacccccaggtgctgtaggagctc Alignment from Pairagon CTGGAAGGTGATACCATCACTTTGAAGCCCCGGCCTTCAGCTGATCTAACCAACAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGCAGCGTCTCTGCCAACCCCAAGCAACGACGCTCCAGTGACCAGG gctaatatgcaactatgctggatattgacagccacccttgctgcctgcagCTTGAGGGAGATACCATCACTCTGAGGCCCCGTCCTTCTGGTGGTCTCACTAATAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGAAGTGTTTCTGCCAACTCCAGGCAACGGCGTTCAAGTGATCAATgtgagtctcccagaccgtttcatggatacccccaggtgctgtaggagctc Alignment from Exonerate_protein2genome CTGGAAGGTGATACCATCACTTTGAAGCCCCGGCCTTCAGCTGATCTAACCAACAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGCAGCGTCTCTGCCAACCCCAAGCAACGACGCTCCAGTGACCAGG gctaatatgcaactatgctggatattgacagccacccttgctgcctgcagCTTGAGGGAGATACCATCACTCTGAGGCCCCGTCCTTCTGGTGGTCTCACTAATAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGAAGTGTTTCTGCCAACTCCAGGCAACGGCGTTCAAGTGATCAATgtgagtctcccagaccgtttcatggatacccccaggtgctgtaggagctc Alignment from Exonerate_coding2genome CTGGAAGGTGATACCATCACTTTGAAGCCCCGGCCTTCAGCTGATCTAACCAACAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGCAGCGTCTCTGCCAACCCCAAGCAACGACGCTCCAGTGACCAGG gctaatatgcaactatgctggatattgacagccacccttgctgcctgcagCTTGAGGGAGATACCATCACTCTGAGGCCCCGTCCTTCTGGTGGTCTCACTAATAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGAAGTGTTTCTGCCAACTCCAGGCAACGGCGTTCAAGTGATCAATgtgagtctcccagaccgtttcatggatacccccaggtgctgtaggagctc Alignment from GeneWise CTGGAAGGTGATACCATCACTTTGAAGCCCCGGCCTTCAGCTGATCTAACCAACAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGCAGCGTCTCTGCCAACCCCAAGCAACGACGCTCCAGTGACCAGG gctaatatgcaactatgctggatattgacagccacccttgctgcctgcagCTTGAGGGAGATACCATCACTCTGAGGCCCCGTCCTTCTGGTGGTCTCACTAATAGCAGTGCCCCATCTCCATCCCACAAGGTTCAGCGAAGTGTTTCTGCCAACTCCAGGCAACGGCGTTCAAGTGATCAATgtgagtctcccagaccgtttcatggatacccccaggtgctgtaggagctc #### Mark2_ID2111_10 --> 0 - 1 Original Alignment CAAATTATG---------------AAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tttgaaaatagttacattttgctctctgtgcttgtgttttttgactgtagCAAATCATGGAGGATCAGTGGATGAAAGATCAGTGGATGAATGTTGGGCATGAGGATGTTGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGCACCACGGCAAACAggtaagtctgtgtggtgctgcatgtctgaggtagggccacgttgtgttaat Alignment from CESAR CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tttgaaaatagttacattttgctctctgtgcttgtgttttttgactgtagCAAATCATGGAGGATCAGTGGATGAAAGATCAGTGGATGAATGTTGGGCATGAGGATGTTGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGCACCACGGCAAACAggtaagtctgtgtggtgctgcatgtctgaggtagggccacgttgtgttaat Alignment from Spaln_aa2Genome CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctctctgtgcttgtgttttttgactgtagCAAATCATGGAGGATCAGTGGATGAAAGATCAGTGGATGAATGTTGGGCATGAGGATGTTGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGCACCACGGCAAACAGgtaagtctgtgtggtgctgcatgtctgaggtagggccacgttgtgttaat Alignment from Spaln_nt2Genome CAAATTATG---------------AAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctctctgtgcttgtgttttttgactgtagCAAATCATGGAGGATCAGTGGATGAAAGATCAGTGGATGAATGTTGGGCATGAGGATGTTGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGCACCACGGCAAACAGgtaagtctgtgtggtgctgcatgtctgaggtagggccacgttgtgttaat Alignment from Pairagon CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctctctgtgcttgtgttttttgactgtagCAAATCATGGAGGATCAGTGGATGAAAGATCAGTGGATGAATGTTGGGCATGAGGATGTTGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGCACCACGGCAAACAGgtaagtctgtgtggtgctgcatgtctgaggtagggccacgttgtgttaat Alignment from Exonerate_protein2genome AGCAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctctctgtgcttgtgttttttgactgtagcaaatcatggaggATCAGTGGATGAAAGATCAGTGGATGAATGTTGGGCATGAGGATGTTGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGCACCACGGCAAACAGgtaagtctgtgtggtgctgcatgtctgaggtagggccacgttgtgttaat Alignment from Exonerate_coding2genome tttgaaaatagttacattttgctctctgtgcttgtgttttttgactgtagcaaatcatggaggatcagtggatgaaagatcagtggatgaatgttgggcatgaggatgttgaactaaagatttatgtgcaaccctttcctgactatagggcaccacggcaaacaggtaagtctgtgtggtgctgcatgtctgaggtagggccacgttgtgttaat Alignment from GeneWise ---CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctctctgtgcttgtgttttttgactgtagcaaatcatggagGATCAGTGGATGAAAGATCAGTGGATGAATGTTGGGCATGAGGATGTTGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGCACCACGGCAAACAGgtaagtctgtgtggtgctgcatgtctgaggtagggccacgttgtgttaat #### Mbl2_ID6424_3 --> 2 - 1 Original Alignment aaTTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACt taatgagattctgctcttaatgtatttgctttttcctgaatgttttttagaaTTTGATACCAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACtgtaggatgtcacactgggggtttctactactcccagaagtttatatattg Alignment from CESAR aaTTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACt taatgagattctgctcttaatgtatttgctttttcctgaatgttttttagaaTTTGATACCAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACtgtaggatgtcacactgggggtttctactactcccagaagtttatatattg Alignment from Spaln_aa2Genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT taatgagattctgctcttaatgtatttgctttttcctgaatgttttttagAATTTGATACCAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtaggatgtcacactgggggtttctactactcccagaagtttatatattg Alignment from Spaln_nt2Genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT taatgagattctgctcttaatgtatttgctttttcctgaatgttttttagAATTTGATACCAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtaggatgtcacactgggggtttctactactcccagaagtttatatattg Alignment from Pairagon AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT taatgagattctgctcttaatgtatttgctttttcctgaatgttttttagAATTTGATACCAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtaggatgtcacactgggggtttctactactcccagaagtttatatattg Alignment from Exonerate_protein2genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT taatgagattctgctcttaatgtatttgctttttcctgaatgttttttagAATTTGATACCAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtaggatgtcacactgggggtttctactactcccagaagtttatatattg Alignment from Exonerate_coding2genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT taatgagattctgctcttaatgtatttgctttttcctgaatgttttttagAATTTGATACCAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtaggatgtcacactgggggtttctactactcccagaagtttatatattg Alignment from GeneWise AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT taatgagattctgctcttaatgtatttgctttttcctgaatgttttttagAATTTGATACCAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtaggatgtcacactgggggtttctactactcccagaagtttatatattg #### Mgea5_ID9585_13 --> 0 - 2 Original Alignment GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACaa gaaagacttgatgtttaaaaagtatcattctttgactaatttctccttagGCTTCTGTTTACCAGATTTGCAGAGAGATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCCGATCTGATTGGAGACaagtgagtctgatcagcagaactgtgttagctgaatcatgactaaactagtt Alignment from CESAR GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACaa gaaagacttgatgtttaaaaagtatcattctttgactaatttctccttagGCTTCTGTTTACCAGATTTGCAGAGAGATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCCGATCTGATTGGAGACaagtgagtctgatcagcagaactgtgttagctgaatcatgactaaactagtt Alignment from Spaln_aa2Genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA gaaagacttgatgtttaaaaagtatcattctttgactaatttctccttagGCTTCTGTTTACCAGATTTGCAGAGAGATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCCGATCTGATTGGAGACAAgtgagtctgatcagcagaactgtgttagctgaatcatgactaaactagtt Alignment from Spaln_nt2Genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA gaaagacttgatgtttaaaaagtatcattctttgactaatttctccttagGCTTCTGTTTACCAGATTTGCAGAGAGATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCCGATCTGATTGGAGACAAgtgagtctgatcagcagaactgtgttagctgaatcatgactaaactagtt Alignment from Pairagon GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA gaaagacttgatgtttaaaaagtatcattctttgactaatttctccttagGCTTCTGTTTACCAGATTTGCAGAGAGATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCCGATCTGATTGGAGACAAgtgagtctgatcagcagaactgtgttagctgaatcatgactaaactagtt Alignment from Exonerate_protein2genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA gaaagacttgatgtttaaaaagtatcattctttgactaatttctccttagGCTTCTGTTTACCAGATTTGCAGAGAGATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCCGATCTGATTGGAGACAAgtgagtctgatcagcagaactgtgttagctgaatcatgactaaactagtt Alignment from Exonerate_coding2genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA gaaagacttgatgtttaaaaagtatcattctttgactaatttctccttagGCTTCTGTTTACCAGATTTGCAGAGAGATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCCGATCTGATTGGAGACAAgtgagtctgatcagcagaactgtgttagctgaatcatgactaaactagtt Alignment from GeneWise GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA gaaagacttgatgtttaaaaagtatcattctttgactaatttctccttagGCTTCTGTTTACCAGATTTGCAGAGAGATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCCGATCTGATTGGAGACAAgtgagtctgatcagcagaactgtgttagctgaatcatgactaaactagtt #### Mgea5_ID9586_12 --> 0 - 0 Original Alignment CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG ctccctactactaaccagttccatgagccatcatttttaaccccctccagCGCTTGTTGCCAATTGATGGGGCAAATGAACTTTTTTTTCAGCCCCCCCCTCTGACTCCAACCTCAAAAGTTTATACAATTAGACCTTATTTTCCTAAGGATGATgtaagcgtagtttaacaatccttggagttttgaactacaactaggaaatg Alignment from CESAR CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG ctccctactactaaccagttccatgagccatcatttttaaccccctccagCGCTTGTTGCCAATTGATGGGGCAAATGAACTTTTTTTTCAGCCCCCCCCTCTGACTCCAACCTCAAAAGTTTATACAATTAGACCTTATTTTCCTAAGGATGATgtaagcgtagtttaacaatccttggagttttgaactacaactaggaaatg Alignment from Spaln_aa2Genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG ctccctactactaaccagttccatgagccatcatttttaaccccctccagCGCTTGTTGCCAATTGATGGGGCAAATGAACTTTTTTTTCAGCCCCCCCCTCTGACTCCAACCTCAAAAGTTTATACAATTAGACCTTATTTTCCTAAGGATGATgtaagcgtagtttaacaatccttggagttttgaactacaactaggaaatg Alignment from Spaln_nt2Genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG ctccctactactaaccagttccatgagccatcatttttaaccccctccagCGCTTGTTGCCAATTGATGGGGCAAATGAACTTTTTTTTCAGCCCCCCCCTCTGACTCCAACCTCAAAAGTTTATACAATTAGACCTTATTTTCCTAAGGATGATgtaagcgtagtttaacaatccttggagttttgaactacaactaggaaatg Alignment from Pairagon CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG ctccctactactaaccagttccatgagccatcatttttaaccccctccagCGCTTGTTGCCAATTGATGGGGCAAATGAACTTTTTTTTCAGCCCCCCCCTCTGACTCCAACCTCAAAAGTTTATACAATTAGACCTTATTTTCCTAAGGATGATgtaagcgtagtttaacaatccttggagttttgaactacaactaggaaatg Alignment from Exonerate_protein2genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG ctccctactactaaccagttccatgagccatcatttttaaccccctccagCGCTTGTTGCCAATTGATGGGGCAAATGAACTTTTTTTTCAGCCCCCCCCTCTGACTCCAACCTCAAAAGTTTATACAATTAGACCTTATTTTCCTAAGGATGATgtaagcgtagtttaacaatccttggagttttgaactacaactaggaaatg Alignment from Exonerate_coding2genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG ctccctactactaaccagttccatgagccatcatttttaaccccctccagCGCTTGTTGCCAATTGATGGGGCAAATGAACTTTTTTTTCAGCCCCCCCCTCTGACTCCAACCTCAAAAGTTTATACAATTAGACCTTATTTTCCTAAGGATGATgtaagcgtagtttaacaatccttggagttttgaactacaactaggaaatg Alignment from GeneWise CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG ctccctactactaaccagttccatgagccatcatttttaaccccctccagCGCTTGTTGCCAATTGATGGGGCAAATGAACTTTTTTTTCAGCCCCCCCCTCTGACTCCAACCTCAAAAGTTTATACAATTAGACCTTATTTTCCTAAGGATGATgtaagcgtagtttaacaatccttggagttttgaactacaactaggaaatg #### Mgea5_ID9591_10 --> 0 - 1 Original Alignment ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAg gggtgactgattttctattccctactctcatttgtgttcttctgccttagACAGAGGAATGGCGGTCACAGGCGGCTAGGTTTGAGGAGATGAGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCTAACAGGACTATTCTTTACGACATGTACTACTATGTGTGGGACATTAAGAGTTTGATGTCCATGGTGAAGTCATTTGTACAATGGCCTggtaagtgcagctcaggatctgtcacccctgtttactacagtgaagtgagc Alignment from CESAR ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAg gggtgactgattttctattccctactctcatttgtgttcttctgccttagACAGAGGAATGGCGGTCACAGGCGGCTAGGTTTGAGGAGATGAGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCTAACAGGACTATTCTTTACGACATGTACTACTATGTGTGGGACATTAAGAGTTTGATGTCCATGGTGAAGTCATTTGTACAATGGCCTggtaagtgcagctcaggatctgtcacccctgtttactacagtgaagtgagc Alignment from Spaln_aa2Genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG gggtgactgattttctattccctactctcatttgtgttcttctgccttagACAGAGGAATGGCGGTCACAGGCGGCTAGGTTTGAGGAGATGAGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCTAACAGGACTATTCTTTACGACATGTACTACTATGTGTGGGACATTAAGAGTTTGATGTCCATGGTGAAGTCATTTGTACAATGGCCTGgtaagtgcagctcaggatctgtcacccctgtttactacagtgaagtgagc Alignment from Spaln_nt2Genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG gggtgactgattttctattccctactctcatttgtgttcttctgccttagACAGAGGAATGGCGGTCACAGGCGGCTAGGTTTGAGGAGATGAGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCTAACAGGACTATTCTTTACGACATGTACTACTATGTGTGGGACATTAAGAGTTTGATGTCCATGGTGAAGTCATTTGTACAATGGCCTGgtaagtgcagctcaggatctgtcacccctgtttactacagtgaagtgagc Alignment from Pairagon ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG gggtgactgattttctattccctactctcatttgtgttcttctgccttagACAGAGGAATGGCGGTCACAGGCGGCTAGGTTTGAGGAGATGAGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCTAACAGGACTATTCTTTACGACATGTACTACTATGTGTGGGACATTAAGAGTTTGATGTCCATGGTGAAGTCATTTGTACAATGGCCTGgtaagtgcagctcaggatctgtcacccctgtttactacagtgaagtgagc Alignment from Exonerate_protein2genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG gggtgactgattttctattccctactctcatttgtgttcttctgccttagACAGAGGAATGGCGGTCACAGGCGGCTAGGTTTGAGGAGATGAGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCTAACAGGACTATTCTTTACGACATGTACTACTATGTGTGGGACATTAAGAGTTTGATGTCCATGGTGAAGTCATTTGTACAATGGCCTGgtaagtgcagctcaggatctgtcacccctgtttactacagtgaagtgagc Alignment from Exonerate_coding2genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG gggtgactgattttctattccctactctcatttgtgttcttctgccttagACAGAGGAATGGCGGTCACAGGCGGCTAGGTTTGAGGAGATGAGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCTAACAGGACTATTCTTTACGACATGTACTACTATGTGTGGGACATTAAGAGTTTGATGTCCATGGTGAAGTCATTTGTACAATGGCCTGgtaagtgcagctcaggatctgtcacccctgtttactacagtgaagtgagc Alignment from GeneWise ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG gggtgactgattttctattccctactctcatttgtgttcttctgccttagACAGAGGAATGGCGGTCACAGGCGGCTAGGTTTGAGGAGATGAGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCTAACAGGACTATTCTTTACGACATGTACTACTATGTGTGGGACATTAAGAGTTTGATGTCCATGGTGAAGTCATTTGTACAATGGCCTGgtaagtgcagctcaggatctgtcacccctgtttactacagtgaagtgagc #### Mgea5_ID9596_5 --> 0 - 1 Original Alignment GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAg gaattgctacctcctggagcaagctagtagtcataacctttgtattgcagGTTCCTCAGTTTAGGTGCAGGTCTTTTGCTTTGCTTTTTGATGATATTGATCATAATATGTGTGCTGCTGCAAAGGAGGTCTTTAGCTCTTTTGCA---GCACAGCTTTCTATAACTAATGAGATCTATGAATACTTGGGTGAGCCAGATGCCTTCCTTTTCTGCCTTACAggtatcccctctatgaaatatgttgtgcactgaagggttgttaatgtatat Alignment from CESAR GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAg gaattgctacctcctggagcaagctagtagtcataacctttgtattgcagGTTCCTCAGTTTAGGTGCAGGTCTTTTGCTTTGCTTTTTGATGATATTGATCATAATATGTGTGCTGCTGCAAAGGAGGTCTTTAGCTCTTTTGCA---GCACAGCTTTCTATAACTAATGAGATCTATGAATACTTGGGTGAGCCAGATGCCTTCCTTTTCTGCCTTACAggtatcccctctatgaaatatgttgtgcactgaagggttgttaatgtatat Alignment from Spaln_aa2Genome GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG gaattgctacctcctggagcaagctagtagtcataacctttgtattgcagGTTCCTCAGTTTAGGTGCAGGTCTTTTGCTTTGCTTTTTGATGATATTGATCATAATATGTGTGCTGCTGCAAAGGAGGTCTTTAGCTCTTTTGCA---GCACAGCTTTCTATAACTAATGAGATCTATGAATACTTGGGTGAGCCAGATGCCTTCCTTTTCTGCCTTACAGgtatcccctctatgaaatatgttgtgcactgaagggttgttaatgtatat Alignment from Spaln_nt2Genome GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG gaattgctacctcctggagcaagctagtagtcataacctttgtattgcagGTTCCTCAGTTTAGGTGCAGGTCTTTTGCTTTGCTTTTTGATGATATTGATCATAATATGTGTGCTGCTGCAAAGGAGGTCTTTAGCTCTTTTGCA---GCACAGCTTTCTATAACTAATGAGATCTATGAATACTTGGGTGAGCCAGATGCCTTCCTTTTCTGCCTTACAGgtatcccctctatgaaatatgttgtgcactgaagggttgttaatgtatat Alignment from Pairagon GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG gaattgctacctcctggagcaagctagtagtcataacctttgtattgcagGTTCCTCAGTTTAGGTGCAGGTCTTTTGCTTTGCTTTTTGATGATATTGATCATAATATGTGTGCTGCTGCAAAGGAGGTCTTTAGCTCTTTTGCA---GCACAGCTTTCTATAACTAATGAGATCTATGAATACTTGGGTGAGCCAGATGCCTTCCTTTTCTGCCTTACAGgtatcccctctatgaaatatgttgtgcactgaagggttgttaatgtatat Alignment from Exonerate_protein2genome GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG gaattgctacctcctggagcaagctagtagtcataacctttgtattgcagGTTCCTCAGTTTAGGTGCAGGTCTTTTGCTTTGCTTTTTGATGATATTGATCATAATATGTGTGCTGCTGCAAAGGAGGTCTTTAGCTCTTTTGCA---GCACAGCTTTCTATAACTAATGAGATCTATGAATACTTGGGTGAGCCAGATGCCTTCCTTTTCTGCCTTACAGgtatcccctctatgaaatatgttgtgcactgaagggttgttaatgtatat Alignment from Exonerate_coding2genome GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG gaattgctacctcctggagcaagctagtagtcataacctttgtattgcagGTTCCTCAGTTTAGGTGCAGGTCTTTTGCTTTGCTTTTTGATGATATTGATCATAATATGTGTGCTGCTGCAAAGGAGGTCTTTAGCTCTTTTGCA---GCACAGCTTTCTATAACTAATGAGATCTATGAATACTTGGGTGAGCCAGATGCCTTCCTTTTCTGCCTTACAGgtatcccctctatgaaatatgttgtgcactgaagggttgttaatgtatat Alignment from GeneWise GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG gaattgctacctcctggagcaagctagtagtcataacctttgtattgcagGTTCCTCAGTTTAGGTGCAGGTCTTTTGCTTTGCTTTTTGATGATATTGATCATAATATGTGTGCTGCTGCAAAGGAGGTCTTTAGCTCTTTTGCA---GCACAGCTTTCTATAACTAATGAGATCTATGAATACTTGGGTGAGCCAGATGCCTTCCTTTTCTGCCTTACAGgtatcccctctatgaaatatgttgtgcactgaagggttgttaatgtatat #### Morn4_ID8389_3 --> 1 - 1 Original Alignment gTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTg tccccatgcactcagcttattcatcatttcaggatttcttttcatttcagaTATGAGGGTGAGTTTTCCCAGGGCAAGTTCAATGGTCTTGGGGTTTTCATTCACTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTAGATGGCTTTggtgagttctaactcattaccaagactattagcttacgtataccatggact Alignment from CESAR gTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTg tccccatgcactcagcttattcatcatttcaggatttcttttcatttcagaTATGAGGGTGAGTTTTCCCAGGGCAAGTTCAATGGTCTTGGGGTTTTCATTCACTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTAGATGGCTTTggtgagttctaactcattaccaagactattagcttacgtataccatggact Alignment from Spaln_aa2Genome GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tccccatgcactcagcttattcatcatttcaggatttcttttcatttcagATATGAGGGTGAGTTTTCCCAGGGCAAGTTCAATGGTCTTGGGGTTTTCATTCACTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTAGATGGCTTTGgtgagttctaactcattaccaagactattagcttacgtataccatggact Alignment from Spaln_nt2Genome GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tccccatgcactcagcttattcatcatttcaggatttcttttcatttcagATATGAGGGTGAGTTTTCCCAGGGCAAGTTCAATGGTCTTGGGGTTTTCATTCACTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTAGATGGCTTTGgtgagttctaactcattaccaagactattagcttacgtataccatggact Alignment from Pairagon GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tccccatgcactcagcttattcatcatttcaggatttcttttcatttcagATATGAGGGTGAGTTTTCCCAGGGCAAGTTCAATGGTCTTGGGGTTTTCATTCACTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTAGATGGCTTTGgtgagttctaactcattaccaagactattagcttacgtataccatggact Alignment from Exonerate_protein2genome GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tccccatgcactcagcttattcatcatttcaggatttcttttcatttcagATATGAGGGTGAGTTTTCCCAGGGCAAGTTCAATGGTCTTGGGGTTTTCATTCACTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTAGATGGCTTTGgtgagttctaactcattaccaagactattagcttacgtataccatggact Alignment from Exonerate_coding2genome GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tccccatgcactcagcttattcatcatttcaggatttcttttcatttcagATATGAGGGTGAGTTTTCCCAGGGCAAGTTCAATGGTCTTGGGGTTTTCATTCACTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTAGATGGCTTTGgtgagttctaactcattaccaagactattagcttacgtataccatggact Alignment from GeneWise GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tccccatgcactcagcttattcatcatttcaggatttcttttcatttcagATATGAGGGTGAGTTTTCCCAGGGCAAGTTCAATGGTCTTGGGGTTTTCATTCACTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTAGATGGCTTTGgtgagttctaactcattaccaagactattagcttacgtataccatggact #### Morn4_ID8390_2 --> 2 - 2 Original Alignment gcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAag ttgaaaatgctcggcagatgtaaatctaaattgtttttcttctgcttaaggcTGGAGACATGGTTTTGGTCAGCTGGTGTTTGCAGATGGCGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAaggtaagaacaatagcagcaagatcatacaagatcatagtacagatgaggta Alignment from CESAR gcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAag ttgaaaatgctcggcagatgtaaatctaaattgtttttcttctgcttaaggcTGGAGACATGGTTTTGGTCAGCTGGTGTTTGCAGATGGCGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAaggtaagaacaatagcagcaagatcatacaagatcatagtacagatgaggta Alignment from Spaln_aa2Genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgctcggcagatgtaaatctaaattgtttttcttctgcttaagGCTGGAGACATGGTTTTGGTCAGCTGGTGTTTGCAGATGGCGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtaagaacaatagcagcaagatcatacaagatcatagtacagatgaggta Alignment from Spaln_nt2Genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgctcggcagatgtaaatctaaattgtttttcttctgcttaagGCTGGAGACATGGTTTTGGTCAGCTGGTGTTTGCAGATGGCGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtaagaacaatagcagcaagatcatacaagatcatagtacagatgaggta Alignment from Pairagon GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgctcggcagatgtaaatctaaattgtttttcttctgcttaagGCTGGAGACATGGTTTTGGTCAGCTGGTGTTTGCAGATGGCGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtaagaacaatagcagcaagatcatacaagatcatagtacagatgaggta Alignment from Exonerate_protein2genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgctcggcagatgtaaatctaaattgtttttcttctgcttaagGCTGGAGACATGGTTTTGGTCAGCTGGTGTTTGCAGATGGCGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtaagaacaatagcagcaagatcatacaagatcatagtacagatgaggta Alignment from Exonerate_coding2genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgctcggcagatgtaaatctaaattgtttttcttctgcttaagGCTGGAGACATGGTTTTGGTCAGCTGGTGTTTGCAGATGGCGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtaagaacaatagcagcaagatcatacaagatcatagtacagatgaggta Alignment from GeneWise GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgctcggcagatgtaaatctaaattgtttttcttctgcttaagGCTGGAGACATGGTTTTGGTCAGCTGGTGTTTGCAGATGGCGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtaagaacaatagcagcaagatcatacaagatcatagtacagatgaggta #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTT---TCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ctgattggcgaatagactgagtatatgcctcccccttgcctctcacacagCCTGACAGACCCCTGGAT---------------------GTGTCCTCCTACTTACTTAAGGCAGCTTCTGGCATTGAGAAAGGAGCACGGCATGCAggtaagtttctggcaagctatgtatggcaaggcaccaaggaccaaatatcc Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ctgattggcgaatagactgagtatatgcctcccccttgcctctcacacagCCTGACAGACCCCTGGATGTG------------------TCCTCCTACTTACTTAAGGCAGCTTCTGGCATTGAGAAAGGAGCACGGCATGCAggtaagtttctggcaagctatgtatggcaaggcaccaaggaccaaatatcc Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ctgattggcgaatagactgagtatatgcctcccccttgcctctcacacagCCTGACAGACCCCTGGATGTG------------------TCCTCCTACTTACTTAAGGCAGCTTCTGGCATTGAGAAAGGAGCACGGCATGCAGgtaagtttctggcaagctatgtatggcaaggcaccaaggaccaaatatcc Alignment from Spaln_nt2Genome TTGGGCAGCCCACTGTTTCT-------TACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ctgattggcgaatagactgagtatatgcctcccccttgcctctcacacagCCTGACAGACCCCTGGATGTGTCCTCCTACTTACTTAAGGCAGCTTCTGGCATTGAGAAAGGAGCACGGCATGCAGgtaagtttctggcaagctatgtatggcaaggcaccaaggaccaaatatcc Alignment from Pairagon No alignment No alignment Alignment from Exonerate_protein2genome AAGATTGGGCAGCCCACTGTTTCTTACTTTTTG---AAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ctgattggcgaatagactgagtatatgcctcccccttgcctctcacacagCCTGACAGACCCCTGGATGTGTCCTCCTACTTACTTAAGGCAGCTTCTGGCATTGAGAAAGGAGCACGGCATGCAGgtaagtttctggcaagctatgtatggcaaggcaccaaggaccaaatatcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ctgattggcgaatagactgagtatatgcctcccccttgcctctcacacagCCTGACAGACCCCTGGATGTGTCC------------------TCCTACTTACTTAAGGCAGCTTCTGGCATTGAGAAAGGAGCACGGCATGCAGgtaagtttctggcaagctatgtatggcaaggcaccaaggaccaaatatcc #### Ms4a15_ID3095_2 --> 1 - 0 Original Alignment cAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGC------CAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG aaccacctaatgttcatcacccgatgtttttcttcttcatcattttgcagtAATGCCAGTAGCCTACACCCCCCTCCCTCCATCTTGCCTACCTCTATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGCTTGAAGAATCGCAGCTTGGTGCACAAGCACCCAGTGCAACCCAGCCACCTGATTTTAGACCCATGGAGACCTTTTTGACTGGGAAACCAAAAAGCTCAGGGgtaggtgaggattgttatacaattaggtacagcatacttaaaaggcgtct Alignment from CESAR cAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAG------CCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG aaccacctaatgttcatcacccgatgtttttcttcttcatcattttgcagtAATGCCAGTAGCCTACACCCCCCTCCCTCCATCTTGCCTACCTCTATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGCTTGAAGAATCGCAGCTTGGTGCACAAGCACCCAGTGCAACCCAGCCACCTGATTTTAGACCCATGGAGACCTTTTTGACTGGGAAACCAAAAAGCTCAGGGgtaggtgaggattgttatacaattaggtacagcatacttaaaaggcgtct Alignment from Spaln_aa2Genome CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGC------CAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG aaccacctaatgttcatcacccgatgtttttcttcttcatcattttgcagTAATGCCAGTAGCCTACACCCCCCTCCCTCCATCTTGCCTACCTCTATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGCTTGAAGAATCGCAGCTTGGTGCACAAGCACCCAGTGCAACCCAGCCACCTGATTTTAGACCCATGGAGACCTTTTTGACTGGGAAACCAAAAAGCTCAGGGgtaggtgaggattgttatacaattaggtacagcatacttaaaaggcgtct Alignment from Spaln_nt2Genome CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAGCCT------CCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG aaccacctaatgttcatcacccgatgtttttcttcttcatcattttgcagTAATGCCAGTAGCCTACACCCCCCTCCCTCCATCTTGCCTACCTCTATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGCTTGAAGAATCGCAGCTTGGTGCACAAGCACCCAGTGCAACCCAGCCACCTGATTTTAGACCCATGGAGACCTTTTTGACTGGGAAACCAAAAAGCTCAGGGgtaggtgaggattgttatacaattaggtacagcatacttaaaaggcgtct Alignment from Pairagon CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAGCCT------CCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG aaccacctaatgttcatcacccgatgtttttcttcttcatcattttgcagTAATGCCAGTAGCCTACACCCCCCTCCCTCCATCTTGCCTACCTCTATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGCTTGAAGAATCGCAGCTTGGTGCACAAGCACCCAGTGCAACCCAGCCACCTGATTTTAGACCCATGGAGACCTTTTTGACTGGGAAACCAAAAAGCTCAGGGgtaggtgaggattgttatacaattaggtacagcatacttaaaaggcgtct Alignment from Exonerate_protein2genome CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGC------CAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG aaccacctaatgttcatcacccgatgtttttcttcttcatcattttgcagTAATGCCAGTAGCCTACACCCCCCTCCCTCCATCTTGCCTACCTCTATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGCTTGAAGAATCGCAGCTTGGTGCACAAGCACCCAGTGCAACCCAGCCACCTGATTTTAGACCCATGGAGACCTTTTTGACTGGGAAACCAAAAAGCTCAGGGgtaggtgaggattgttatacaattaggtacagcatacttaaaaggcgtct Alignment from Exonerate_coding2genome AACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGC------CAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG aaccacctaatgttcatcacccgatgtttttcttcttcatcattttgcagtAATGCCAGTAGCCTACACCCCCCTCCCTCCATCTTGCCTACCTCTATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGCTTGAAGAATCGCAGCTTGGTGCACAAGCACCCAGTGCAACCCAGCCACCTGATTTTAGACCCATGGAGACCTTTTTGACTGGGAAACCAAAAAGCTCAGGGgtaggtgaggattgttatacaattaggtacagcatacttaaaaggcgtct Alignment from GeneWise CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAGCCT------CCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG aaccacctaatgttcatcacccgatgtttttcttcttcatcattttgcagTAATGCCAGTAGCCTACACCCCCCTCCCTCCATCTTGCCTACCTCTATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGCTTGAAGAATCGCAGCTTGGTGCACAAGCACCCAGTGCAACCCAGCCACCTGATTTTAGACCCATGGAGACCTTTTTGACTGGGAAACCAAAAAGCTCAGGGgtaggtgaggattgttatacaattaggtacagcatacttaaaaggcgtct #### Ms4a2_ID3239_6 --> 0 - 0 Original Alignment GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGA---CAAGAGTTAGAAAGTAAAAAG caacaaggcatagaccataacactcacattaaaacaattttttattttagGATCTGGTC---ATGATGCTGTTTTTTACTATACTAGCACTCTGTAGCGCCGTACTATTCACTATTTATAAGATTGGACAGGAGGAGTTGGAAACTAAGAAGgtaagagcaataggggctgttgtataagagtatctgtatggtgctaatcc Alignment from CESAR GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAG---TTAGAAAGTAAAAAG caacaaggcatagaccataacactcacattaaaacaattttttattttagGATCTGGTC---ATGATGCTGTTTTTTACTATACTAGCACTCTGTAGCGCCGTACTATTCACTATTTATAAGATTGGACAGGAGGAGTTGGAAACTAAGAAGgtaagagcaataggggctgttgtataagagtatctgtatggtgctaatcc Alignment from Spaln_aa2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAA---GAGTTAGAAAGTAAAAAG caacaaggcatagaccataacactcacattaaaacaattttttattttagGATCTGGTC---ATGATGCTGTTTTTTACTATACTAGCACTCTGTAGCGCCGTACTATTCACTATTTATAAGATTGGACAGGAGGAGTTGGAAACTAAGAAGgtaagagcaataggggctgttgtataagagtatctgtatggtgctaatcc Alignment from Spaln_nt2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAG---TTAGAAAGTAAAAAG caacaaggcatagaccataacactcacattaaaacaattttttattttagGATCTGG---TCATGATGCTGTTTTTTACTATACTAGCACTCTGTAGCGCCGTACTATTCACTATTTATAAGATTGGACAGGAGGAGTTGGAAACTAAGAAGgtaagagcaataggggctgttgtataagagtatctgtatggtgctaatcc Alignment from Pairagon GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGAC---AAGAGTTAGAAAGTAAAAAG caacaaggcatagaccataacactcacattaaaacaattttttattttagGATCTGG---TCATGATGCTGTTTTTTACTATACTAGCACTCTGTAGCGCCGTACTATTCACTATTTATAAGATTGGACAGGAGGAGTTGGAAACTAAGAAGgtaagagcaataggggctgttgtataagagtatctgtatggtgctaatcc Alignment from Exonerate_protein2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAA---GAGTTAGAAAGTAAAAAG caacaaggcatagaccataacactcacattaaaacaattttttattttagGATCTGGTC---ATGATGCTGTTTTTTACTATACTAGCACTCTGTAGCGCCGTACTATTCACTATTTATAAGATTGGACAGGAGGAGTTGGAAACTAAGAAGgtaagagcaataggggctgttgtataagagtatctgtatggtgctaatcc Alignment from Exonerate_coding2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAA---GAGTTAGAAAGTAAAAAG caacaaggcatagaccataacactcacattaaaacaattttttattttagGATCTGGTC---ATGATGCTGTTTTTTACTATACTAGCACTCTGTAGCGCCGTACTATTCACTATTTATAAGATTGGACAGGAGGAGTTGGAAACTAAGAAGgtaagagcaataggggctgttgtataagagtatctgtatggtgctaatcc Alignment from GeneWise GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAG---TTAGAAAGTAAAAAG caacaaggcatagaccataacactcacattaaaacaattttttattttagGATCTGGTC---ATGATGCTGTTTTTTACTATACTAGCACTCTGTAGCGCCGTACTATTCACTATTTATAAGATTGGACAGGAGGAGTTGGAAACTAAGAAGgtaagagcaataggggctgttgtataagagtatctgtatggtgctaatcc #### Ms4a3_ID3251_2 --> 0 - 0 Original Alignment GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaaaaagaaagtgtgcgtgttcttttgaggaactctcctctgttcacagGCAATATTGATTCTCAACAGTATATTGGTTTTAGCTCTTGGTATTTTTTTAGTTTGCCTACAGCATGTATCACATCATTTCAAC---TTCTTTTTTTCTGCATTTGACTCAGGCTACCCATTGTGGGGCACTGTATTTgtgagcattctacctttttgttgcatccatttagaaagtgtcccaaacgc Alignment from CESAR GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaaaaagaaagtgtgcgtgttcttttgaggaactctcctctgttcacagGCAATATTGATTCTCAACAGTATATTGGTTTTAGCTCTTGGTATTTTTTTAGTTTGCCTACAGCATGTATCACATCATTTC---AACTTCTTTTTTTCTGCATTTGACTCAGGCTACCCATTGTGGGGCACTGTATTTgtgagcattctacctttttgttgcatccatttagaaagtgtcccaaacgc Alignment from Spaln_aa2Genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaaaaagaaagtgtgcgtgttcttttgaggaactctcctctgttcacagGCAATATTGATTCTCAACAGTATATTGGTTTTAGCTCTTGGTATTTTTTTAGTTTGCCTACAGCATGTATCACATCATTTC---AACTTCTTTTTTTCTGCATTTGACTCAGGCTACCCATTGTGGGGCACTGTATTTgtgagcattctacctttttgttgcatccatttagaaagtgtcccaaacgc Alignment from Spaln_nt2Genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaaaaagaaagtgtgcgtgttcttttgaggaactctcctctgttcacagGCAATATTGATTCTCAACAGTATATTGGTTTTAGCTCTTGGTATTTTTTTAGTTTGCCTACAGCATGTATCACATCATTTCA---ACTTCTTTTTTTCTGCATTTGACTCAGGCTACCCATTGTGGGGCACTGTATTTgtgagcattctacctttttgttgcatccatttagaaagtgtcccaaacgc Alignment from Pairagon GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaaaaagaaagtgtgcgtgttcttttgaggaactctcctctgttcacagGCAATATTGATTCTCAACAGTATATTGGTTTTAGCTCTTGGTATTTTTTTAGTTTGCCTACAGCATGTATCACATCATTTCA---ACTTCTTTTTTTCTGCATTTGACTCAGGCTACCCATTGTGGGGCACTGTATTTgtgagcattctacctttttgttgcatccatttagaaagtgtcccaaacgc Alignment from Exonerate_protein2genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaaaaagaaagtgtgcgtgttcttttgaggaactctcctctgttcacagGCAATATTGATTCTCAACAGTATATTGGTTTTAGCTCTTGGTATTTTTTTAGTTTGCCTACAGCATGTATCACATCATTTC---AACTTCTTTTTTTCTGCATTTGACTCAGGCTACCCATTGTGGGGCACTGTATTTgtgagcattctacctttttgttgcatccatttagaaagtgtcccaaacgc Alignment from Exonerate_coding2genome GGTGTACTGCAAGCCCTCGGGGCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaaaaagaaagtgtgcgtgttcttttgaGGAACTCTCCTCTGTTCACAGGCAATATTGATTCTCAACAGTATATTGGTTTTAGCTCTTGGTATTTTTTTAGTTTGCCTACAGCATGTATCACATCATTTC---AACTTCTTTTTTTCTGCATTTGACTCAGGCTACCCATTGTGGGGCACTGTATTTgtgagcattctacctttttgttgcatccatttagaaagtgtcccaaacgc Alignment from GeneWise GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaaaaagaaagtgtgcgtgttcttttgaggaactctcctctgttcacagGCAATATTGATTCTCAACAGTATATTGGTTTTAGCTCTTGGTATTTTTTTAGTTTGCCTACAGCATGTATCACATCATTTC---AACTTCTTTTTTTCTGCATTTGACTCAGGCTACCCATTGTGGGGCACTGTATTTgtgagcattctacctttttgttgcatccatttagaaagtgtcccaaacgc #### Ms4a4b_ID3188_2 --> 0 - 0 Original Alignment GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gtatgtctgtacagaaggtgtcttaatccccacttaattctttcccaaagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCGATCTGGGGATCTATAATGgtatggatgctgttgatccaatattgagattaccgtaaccttgacagatg Alignment from CESAR GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gtatgtctgtacagaaggtgtcttaatccccacttaattctttcccaaagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCGATCTGGGGATCTATAATGgtatggatgctgttgatccaatattgagattaccgtaaccttgacagatg Alignment from Spaln_aa2Genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gtatgtctgtacagaaggtgtcttaatccccacttaattctttcccaaagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCGATCTGGGGATCTATAATGgtatggatgctgttgatccaatattgagattaccgtaaccttgacagatg Alignment from Spaln_nt2Genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gtatgtctgtacagaaggtgtcttaatccccacttaattctttcccaaagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCGATCTGGGGATCTATAATGgtatggatgctgttgatccaatattgagattaccgtaaccttgacagatg Alignment from Pairagon GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gtatgtctgtacagaaggtgtcttaatccccacttaattctttcccaaagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCGATCTGGGGATCTATAATGgtatggatgctgttgatccaatattgagattaccgtaaccttgacagatg Alignment from Exonerate_protein2genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTG gtatgtctgtacagaaggtgtcttaatccccacttaattctttcccaaagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCGATCTGgggatctataatggtatggatgctgttgatccaatattgagattaccgtaaccttgacagatg Alignment from Exonerate_coding2genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTG gtatgtctgtacagaaggtgtcttaatccccacttaattctttcccaaagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCGATCTGgggatctataatggtatggatgctgttgatccaatattgagattaccgtaaccttgacagatg Alignment from GeneWise GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gtatgtctgtacagaaggtgtcttaatccccacttaattctttcccaaagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCGATCTGGGGATCTATAATGgtatggatgctgttgatccaatattgagattaccgtaaccttgacagatg #### Ms4a4b_ID3190_4 --> 0 - 0 Original Alignment ATCGTTGCCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG atgtgttgtaaatgtcaaaggaggctgcctaattgtttgttttcttccagATTGTGACCAGTCTAACCTTGAACTTAATTACATCTGTCTTGGCAGCATCTGCAAGCATAATGGATGTGCTCAGTGTGGCTGTTGGCCCTCGGTATCTATTTCGATACAATTATATGATTGCAAGGgtatgctccttactcttaatcaaataatttgccacccccgtctagtttta Alignment from CESAR ATCGTTGCCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG atgtgttgtaaatgtcaaaggaggctgcctaattgtttgttttcttccagATTGTGACCAGTCTAACCTTGAACTTAATTACATCTGTCTTGGCAGCATCTGCAAGCATAATGGATGTGCTCAGTGTGGCTGTTGGCCCTCGGTATCTATTTCGATACAATTATATGATTGCAAGGgtatgctccttactcttaatcaaataatttgccacccccgtctagtttta Alignment from Spaln_aa2Genome ATCGTTGCCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG atgtgttgtaaatgtcaaaggaggctgcctaattgtttgttttcttccagATTGTGACCAGTCTAACCTTGAACTTAATTACATCTGTCTTGGCAGCATCTGCAAGCATAATGGATGTGCTCAGTGTGGCTGTTGGCCCTCGGTATCTATTTCGATACAATTATATGATTGCAAGGgtatgctccttactcttaatcaaataatttgccacccccgtctagtttta Alignment from Spaln_nt2Genome ATCGTTGCCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG atgtgttgtaaatgtcaaaggaggctgcctaattgtttgttttcttccagATTGTGACCAGTCTAACCTTGAACTTAATTACATCTGTCTTGGCAGCATCTGCAAGCATAATGGATGTGCTCAGTGTGGCTGTTGGCCCTCGGTATCTATTTCGATACAATTATATGATTGCAAGGgtatgctccttactcttaatcaaataatttgccacccccgtctagtttta Alignment from Pairagon ATCGTTGCCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG atgtgttgtaaatgtcaaaggaggctgcctaattgtttgttttcttccagATTGTGACCAGTCTAACCTTGAACTTAATTACATCTGTCTTGGCAGCATCTGCAAGCATAATGGATGTGCTCAGTGTGGCTGTTGGCCCTCGGTATCTATTTCGATACAATTATATGATTGCAAGGgtatgctccttactcttaatcaaataatttgccacccccgtctagtttta Alignment from Exonerate_protein2genome CCGGATCC---CTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTGATCGTTGCCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG ATGTGTTGTAAATGTCAAAGGAGGCTGCCTAATTGTTTGTTTTCTTCCAGATTGTGACCAGTCTAACCTTGAACTTAATTACATCTGTCTTGGCAGCATCTGCAAGCATAATGGATGTGCTCAGTGTGGCTGTTGGCCCTCGGTATCTATTTCGATACAATTATATGATTGCAAGGgtatgctccttactcttaatcaaataatttgccacccccgtctagtttta Alignment from Exonerate_coding2genome CCGGATCC---CTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTGATCGTTGCCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG ATGTGTTGTAAATGTCAAAGGAGGCTGCCTAATTGTTTGTTTTCTTCCAGATTGTGACCAGTCTAACCTTGAACTTAATTACATCTGTCTTGGCAGCATCTGCAAGCATAATGGATGTGCTCAGTGTGGCTGTTGGCCCTCGGTATCTATTTCGATACAATTATATGATTGCAAGGgtatgctccttactcttaatcaaataatttgccacccccgtctagtttta Alignment from GeneWise ATCGTTGCCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG atgtgttgtaaatgtcaaaggaggctgcctaattgtttgttttcttccagATTGTGACCAGTCTAACCTTGAACTTAATTACATCTGTCTTGGCAGCATCTGCAAGCATAATGGATGTGCTCAGTGTGGCTGTTGGCCCTCGGTATCTATTTCGATACAATTATATGATTGCAAGGgtatgctccttactcttaatcaaataatttgccacccccgtctagtttta #### Ms4a4d_ID3223_3 --> 0 - 0 Original Alignment TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG agttaatcccgccaagggctgttcccattgttatatatttatttgcccagTTTATTTTTTCAGGATCCCTGTCAATTGCTGCAGGGGTGAAACTTAAAAAAGCAACAgtaagtggtgggactgcggcaattagtggttataggatttctcacaacgt Alignment from CESAR TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG agttaatcccgccaagggctgttcccattgttatatatttatttgcccagTTTATTTTTTCAGGATCCCTGTCAATTGCTGCAGGGGTGAAACTTAAAAAAGCAACAgtaagtggtgggactgcggcaattagtggttataggatttctcacaacgt Alignment from Spaln_aa2Genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG agttaatcccgccaagggctgttcccattgttatatatttatttgcccagTTTATTTTTTCAGGATCCCTGTCAATTGCTGCAGGGGTGAAACTTAAAAAAGCAACAgtaagtggtgggactgcggcaattagtggttataggatttctcacaacgt Alignment from Spaln_nt2Genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG agttaatcccgccaagggctgttcccattgttatatatttatttgcccagTTTATTTTTTCAGGATCCCTGTCAATTGCTGCAGGGGTGAAACTTAAAAAAGCAACAgtaagtggtgggactgcggcaattagtggttataggatttctcacaacgt Alignment from Pairagon TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG agttaatcccgccaagggctgttcccattgttatatatttatttgcccagTTTATTTTTTCAGGATCCCTGTCAATTGCTGCAGGGGTGAAACTTAAAAAAGCAACAgtaagtggtgggactgcggcaattagtggttataggatttctcacaacgt Alignment from Exonerate_protein2genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG agttaatcccgccaagggctgttcccattgttatatatttatttgcccagTTTATTTTTTCAGGATCCCTGTCAATTGCTGCAGGGGTGAAACTTAAAAAAGCAACAgtaagtggtgggactgcggcaattagtggttataggatttctcacaacgt Alignment from Exonerate_coding2genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG agttaatcccgccaagggctgttcccattgttatatatttatttgcccagTTTATTTTTTCAGGATCCCTGTCAATTGCTGCAGGGGTGAAACTTAAAAAAGCAACAgtaagtggtgggactgcggcaattagtggttataggatttctcacaacgt Alignment from GeneWise TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG agttaatcccgccaagggctgttcccattgttatatatttatttgcccagTTTATTTTTTCAGGATCCCTGTCAATTGCTGCAGGGGTGAAACTTAAAAAAGCAACAgtaagtggtgggactgcggcaattagtggttataggatttctcacaacgt #### Ms4a4d_ID3224_4 --> 0 - 0 Original Alignment ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTG---GCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattattaaattaactcacacccataccccagATCATCAGCAGCCTAAGTGTGAACACTATTAGTTCTGTGCTCGCTGCTGTGACAGCGAGCATTCTGGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagataatttcattttttatgactgtggtatatcatgtcaaaggaatg Alignment from CESAR ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCT---GTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattattaaattaactcacacccataccccagATCATCAGCAGCCTAAGTGTGAACACTATTAGTTCTGTGCTCGCTGCTGTGACAGCGAGCATTCTGGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagataatttcattttttatgactgtggtatatcatgtcaaaggaatg Alignment from Spaln_aa2Genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTG---GCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattattaaattaactcacacccataccccagATCATCAGCAGCCTAAGTGTGAACACTATTAGTTCTGTGCTCGCTGCTGTGACAGCGAGCATTCTGGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagataatttcattttttatgactgtggtatatcatgtcaaaggaatg Alignment from Spaln_nt2Genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTG---TGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattattaaattaactcacacccataccccagATCATCAGCAGCCTAAGTGTGAACACTATTAGTTCTGTGCTCGCTGCTGTGACAGCGAGCATTCTGGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagataatttcattttttatgactgtggtatatcatgtcaaaggaatg Alignment from Pairagon ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTG---GCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattattaaattaactcacacccataccccagATCATCAGCAGCCTAAGTGTGAACACTATTAGTTCTGTGCTCGCTGCTGTGACAGCGAGCATTCTGGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagataatttcattttttatgactgtggtatatcatgtcaaaggaatg Alignment from Exonerate_protein2genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTG---GCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattattaaattaactcacacccataccccagATCATCAGCAGCCTAAGTGTGAACACTATTAGTTCTGTGCTCGCTGCTGTGACAGCGAGCATTCTGGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagataatttcattttttatgactgtggtatatcatgtcaaaggaatg Alignment from Exonerate_coding2genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTG---GCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattattaaattaactcacacccataccccagATCATCAGCAGCCTAAGTGTGAACACTATTAGTTCTGTGCTCGCTGCTGTGACAGCGAGCATTCTGGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagataatttcattttttatgactgtggtatatcatgtcaaaggaatg Alignment from GeneWise ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCT---GTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattattaaattaactcacacccataccccagATCATCAGCAGCCTAAGTGTGAACACTATTAGTTCTGTGCTCGCTGCTGTGACAGCGAGCATTCTGGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagataatttcattttttatgactgtggtatatcatgtcaaaggaatg #### Ms4a4d_ID3225_5 --> 0 - 0 Original Alignment AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG tgcatatgatgatcctatttcaaggcaatatcacacatttttccccccagAGTCTGGATGTTTTGATGATAATTTTGAATATGCTACAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCCTCCTGCTGCAATTCCAGTGAGgtaagtttcatttagcagctcagatcatgggttcagaaaacgctgagtaa Alignment from CESAR AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG tgcatatgatgatcctatttcaaggcaatatcacacatttttccccccagAGTCTGGATGTTTTGATGATAATTTTGAATATGCTACAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCCTCCTGCTGCAATTCCAGTGAGgtaagtttcatttagcagctcagatcatgggttcagaaaacgctgagtaa Alignment from Spaln_aa2Genome AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG tgcatatgatgatcctatttcaaggcaatatcacacatttttccccccagAGTCTGGATGTTTTGATGATAATTTTGAATATGCTACAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCCTCCTGCTGCAATTCCAGTGAGgtaagtttcatttagcagctcagatcatgggttcagaaaacgctgagtaa Alignment from Spaln_nt2Genome AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG tgcatatgatgatcctatttcaaggcaatatcacacatttttccccccagAGTCTGGATGTTTTGATGATAATTTTGAATATGCTACAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCCTCCTGCTGCAATTCCAGTGAGgtaagtttcatttagcagctcagatcatgggttcagaaaacgctgagtaa Alignment from Pairagon AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG tgcatatgatgatcctatttcaaggcaatatcacacatttttccccccagAGTCTGGATGTTTTGATGATAATTTTGAATATGCTACAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCCTCCTGCTGCAATTCCAGTGAGgtaagtttcatttagcagctcagatcatgggttcagaaaacgctgagtaa Alignment from Exonerate_protein2genome AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG tgcatatgatgatcctatttcaaggcaatatcacacatttttccccccagAGTCTGGATGTTTTGATGATAATTTTGAATATGCTACAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCCTCCTGCTGCAATTCCAGTGAGgtaagtttcatttagcagctcagatcatgggttcagaaaacgctgagtaa Alignment from Exonerate_coding2genome AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG tgcatatgatgatcctatttcaaggcaatatcacacatttttccccccagAGTCTGGATGTTTTGATGATAATTTTGAATATGCTACAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCCTCCTGCTGCAATTCCAGTGAGgtaagtttcatttagcagctcagatcatgggttcagaaaacgctgagtaa Alignment from GeneWise AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG tgcatatgatgatcctatttcaaggcaatatcacacatttttccccccagAGTCTGGATGTTTTGATGATAATTTTGAATATGCTACAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCCTCCTGCTGCAATTCCAGTGAGgtaagtttcatttagcagctcagatcatgggttcagaaaacgctgagtaa #### Ms4a5_ID3162_3 --> 0 - 0 Original Alignment TTCATTAACTCTGGGGCCTTCCTGATTGCTCTGAAAAGGAAAACTACGGACACTCTG aaaataggctagtagttaatcttgagtacccagcttcttctttctcacagTTCACTAACTCTGGCACCTTCCTGATTGCTCTAAAAAGGAAAACTATAGATACTCTGgtgagatcagtccagccaacaacttgttttaaaatcataccactcaattt Alignment from CESAR TTCATTAACTCTGGGGCCTTCCTGATTGCTCTGAAAAGGAAAACTACGGACACTCTG aaaataggctagtagttaatcttgagtacccagcttcttctttctcacagTTCACTAACTCTGGCACCTTCCTGATTGCTCTAAAAAGGAAAACTATAGATACTCTGgtgagatcagtccagccaacaacttgttttaaaatcataccactcaattt Alignment from Spaln_aa2Genome TTCATTAACTCTGGGGCCTTCCTGATTGCTCTGAAAAGGAAAACTACGGACACTCTG aaaataggctagtagttaatcttgagtacccagcttcttctttctcacagTTCACTAACTCTGGCACCTTCCTGATTGCTCTAAAAAGGAAAACTATAGATACTCTGgtgagatcagtccagccaacaacttgttttaaaatcataccactcaattt Alignment from Spaln_nt2Genome TTCATTAACTCTGGGGCCTTCCTGATTGCTCTGAAAAGGAAAACTACGGACACTCTG aaaataggctagtagttaatcttgagtacccagcttcttctttctcacagTTCACTAACTCTGGCACCTTCCTGATTGCTCTAAAAAGGAAAACTATAGATACTCTGgtgagatcagtccagccaacaacttgttttaaaatcataccactcaattt Alignment from Pairagon TTCATTAACTCTGGGGCCTTCCTGATTGCTCTGAAAAGGAAAACTACGGACACTCTG aaaataggctagtagttaatcttgagtacccagcttcttctttctcacagTTCACTAACTCTGGCACCTTCCTGATTGCTCTAAAAAGGAAAACTATAGATACTCTGgtgagatcagtccagccaacaacttgttttaaaatcataccactcaattt Alignment from Exonerate_protein2genome TTCATTAACTCTGGGGCCTTCCTGATTGCTCTGAAAAGGAAAACTACGGACACTCTG aaaataggctagtagttaatcttgagtacccagcttcttctttctcacagTTCACTAACTCTGGCACCTTCCTGATTGCTCTAAAAAGGAAAACTATAGATACTCTGgtgagatcagtccagccaacaacttgttttaaaatcataccactcaattt Alignment from Exonerate_coding2genome TATCCTTTCTGGGGCTCTGTTTTGTTCATTAACTCTGGGGCCTTCCTGATTGCTCTGAAAAGGAAAACTACGGACACTCTG aaaataggctagtagttaatcttgagTACCCAGCTTCTTCTTTCTCACAGTTCACTAACTCTGGCACCTTCCTGATTGCTCTAAAAAGGAAAACTATAGATACTCTGgtgagatcagtccagccaacaacttgttttaaaatcataccactcaattt Alignment from GeneWise TTCATTAACTCTGGGGCCTTCCTGATTGCTCTGAAAAGGAAAACTACGGACACTCTG aaaataggctagtagttaatcttgagtacccagcttcttctttctcacagTTCACTAACTCTGGCACCTTCCTGATTGCTCTAAAAAGGAAAACTATAGATACTCTGgtgagatcagtccagccaacaacttgttttaaaatcataccactcaattt #### Ms4a6b_ID3214_3 --> 0 - 0 Original Alignment TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG gactcaccctaatacttgggtcataatccaaggtttcttccttttgtcagTTTATAGTTTCTGGGATTCCATCCATTGTCACAGAGACTAAGTCAACAAAAATTCTGgtacagcagatcattgagcatatgaacacagagcccttgagtcactaaac Alignment from CESAR TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG gactcaccctaatacttgggtcataatccaaggtttcttccttttgtcagTTTATAGTTTCTGGGATTCCATCCATTGTCACAGAGACTAAGTCAACAAAAATTCTGgtacagcagatcattgagcatatgaacacagagcccttgagtcactaaac Alignment from Spaln_aa2Genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG gactcaccctaatacttgggtcataatccaaggtttcttccttttgtcagTTTATAGTTTCTGGGATTCCATCCATTGTCACAGAGACTAAGTCAACAAAAATTCTGgtacagcagatcattgagcatatgaacacagagcccttgagtcactaaac Alignment from Spaln_nt2Genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG gactcaccctaatacttgggtcataatccaaggtttcttccttttgtcagTTTATAGTTTCTGGGATTCCATCCATTGTCACAGAGACTAAGTCAACAAAAATTCTGgtacagcagatcattgagcatatgaacacagagcccttgagtcactaaac Alignment from Pairagon TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG gactcaccctaatacttgggtcataatccaaggtttcttccttttgtcagTTTATAGTTTCTGGGATTCCATCCATTGTCACAGAGACTAAGTCAACAAAAATTCTGgtacagcagatcattgagcatatgaacacagagcccttgagtcactaaac Alignment from Exonerate_protein2genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG gactcaccctaatacttgggtcataatccaaggtttcttccttttgtcagTTTATAGTTTCTGGGATTCCATCCATTGTCACAGAGACTAAGTCAACAAAAATTCTGgtacagcagatcattgagcatatgaacacagagcccttgagtcactaaac Alignment from Exonerate_coding2genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG gactcaccctaatacttgggtcataatccaaggtttcttccttttgtcagTTTATAGTTTCTGGGATTCCATCCATTGTCACAGAGACTAAGTCAACAAAAATTCTGgtacagcagatcattgagcatatgaacacagagcccttgagtcactaaac Alignment from GeneWise TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG gactcaccctaatacttgggtcataatccaaggtttcttccttttgtcagTTTATAGTTTCTGGGATTCCATCCATTGTCACAGAGACTAAGTCAACAAAAATTCTGgtacagcagatcattgagcatatgaacacagagcccttgagtcactaaac #### Ms4a6c_ID3197_2 --> 0 - 0 Original Alignment GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT agcctggggacaggaatcctcacattatttgtttttccatttctctgaagGCAATCCATATCATGTGTGCTTTGACAGTGTTGGCTCTG---GTTATTTTGTCATCAGTTCCTCCTGTCCCATACTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCCGACTACCCATTTATAGGAGCTTTGTTTgtgaggtcagatccagctatagtagcatgactatctatgggcctgactcc Alignment from CESAR GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT agcctggggacaggaatcctcacattatttgtttttccatttctctgaagGCAATCCATATCATGTGTGCTTTGACAGTGTTGGCTCTG---GTTATTTTGTCATCAGTTCCTCCTGTCCCATACTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCCGACTACCCATTTATAGGAGCTTTGTTTgtgaggtcagatccagctatagtagcatgactatctatgggcctgactcc Alignment from Spaln_aa2Genome GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT agcctggggacaggaatcctcacattatttgtttttccatttctctgaagGCAATCCATATCATGTGTGCTTTGACAGTGTTGGCTCTG---GTTATTTTGTCATCAGTTCCTCCTGTCCCATACTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCCGACTACCCATTTATAGGAGCTTTGTTTgtgaggtcagatccagctatagtagcatgactatctatgggcctgactcc Alignment from Spaln_nt2Genome GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT agcctggggacaggaatcctcacattatttgtttttccatttctctgaagGCAATCCATATCATGTGTGCTTTGACAGTGTTGGCTCTGG---TTATTTTGTCATCAGTTCCTCCTGTCCCATACTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCCGACTACCCATTTATAGGAGCTTTGTTTgtgaggtcagatccagctatagtagcatgactatctatgggcctgactcc Alignment from Pairagon GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT agcctggggacaggaatcctcacattatttgtttttccatttctctgaagGCAATCCATATCATGTGTGCTTTGACAGTGTTGGCTCTGG---TTATTTTGTCATCAGTTCCTCCTGTCCCATACTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCCGACTACCCATTTATAGGAGCTTTGTTTgtgaggtcagatccagctatagtagcatgactatctatgggcctgactcc Alignment from Exonerate_protein2genome GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT agcctggggacaggaatcctcacattatttgtttttccatttctctgaagGCAATCCATATCATGTGTGCTTTGACAGTGTTGGCTCTG---GTTATTTTGTCATCAGTTCCTCCTGTCCCATACTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCCGACTACCCATTTATAGGAGCTTTGTTTgtgaggtcagatccagctatagtagcatgactatctatgggcctgactcc Alignment from Exonerate_coding2genome GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT agcctggggacaggaatcctcacattatttgtttttccatttctctgaagGCAATCCATATCATGTGTGCTTTGACAGTGTTGGCTCTG---GTTATTTTGTCATCAGTTCCTCCTGTCCCATACTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCCGACTACCCATTTATAGGAGCTTTGTTTgtgaggtcagatccagctatagtagcatgactatctatgggcctgactcc Alignment from GeneWise GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT agcctggggacaggaatcctcacattatttgtttttccatttctctgaagGCAATCCATATCATGTGTGCTTTGACAGTGTTGGCTCTG---GTTATTTTGTCATCAGTTCCTCCTGTCCCATACTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCCGACTACCCATTTATAGGAGCTTTGTTTgtgaggtcagatccagctatagtagcatgactatctatgggcctgactcc #### Mta2_ID2527_2 --> 2 - 0 Original Alignment atTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAATAAG cactgacgctcccttgtgctactatttgaccagctcactctgttttacagatTATGTATATTTTGAAAATTCATCCAGTAATCCTTTTCTGGTTAGACAAATAGAGGAGCTCAATAAAgtgtgtgaaatcaatgcctattctttttacagattaagacttgcctctat Alignment from CESAR atTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAATAAG cactgacgctcccttgtgctactatttgaccagctcactctgttttacagatTATGTATATTTTGAAAATTCATCCAGTAATCCTTTTCTGGTTAGACAAATAGAGGAGCTCAATAAAgtgtgtgaaatcaatgcctattctttttacagattaagacttgcctctat Alignment from Spaln_aa2Genome ATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAATAAG cactgacgctcccttgtgctactatttgaccagctcactctgttttacagATTATGTATATTTTGAAAATTCATCCAGTAATCCTTTTCTGGTTAGACAAATAGAGGAGCTCAATAAAgtgtgtgaaatcaatgcctattctttttacagattaagacttgcctctat Alignment from Spaln_nt2Genome ATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAATAAG cactgacgctcccttgtgctactatttgaccagctcactctgttttacagATTATGTATATTTTGAAAATTCATCCAGTAATCCTTTTCTGGTTAGACAAATAGAGGAGCTCAATAAAgtgtgtgaaatcaatgcctattctttttacagattaagacttgcctctat Alignment from Pairagon ATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAATAAG cactgacgctcccttgtgctactatttgaccagctcactctgttttacagATTATGTATATTTTGAAAATTCATCCAGTAATCCTTTTCTGGTTAGACAAATAGAGGAGCTCAATAAAgtgtgtgaaatcaatgcctattctttttacagattaagacttgcctctat Alignment from Exonerate_protein2genome ATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAATAAG cactgacgctcccttgtgctactatttgaccagctcactctgttttacagATTATGTATATTTTGAAAATTCATCCAGTAATCCTTTTCTGGTTAGACAAATAGAGGAGCTCAATAAAgtgtgtgaaatcaatgcctattctttttacagattaagacttgcctctat Alignment from Exonerate_coding2genome GATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAATAAG cactgacgctcccttgtgctactatttgaccagctcactctgttttacaGATTATGTATATTTTGAAAATTCATCCAGTAATCCTTTTCTGGTTAGACAAATAGAGGAGCTCAATAAAgtgtgtgaaatcaatgcctattctttttacagattaagacttgcctctat Alignment from GeneWise GCGGCTAACATGTACCGGGTGGGAGATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAATAAG cactgacgctcccttgtgctactatTTGACCAGCTCACTCTGTTTTACAGATTATGTATATTTTGAAAATTCATCCAGTAATCCTTTTCTGGTTAGACAAATAGAGGAGCTCAATAAAgtgtgtgaaatcaatgcctattctttttacagattaagacttgcctctat #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg agaccattaatatcagcactaaatcacactgagtggtctatttttcccagGAATGTTTCTTTTATTCATTGGTGTATGAGCCTGTGCAGAAAACACTACTCACAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAAGCTGCAATTCCAGATCATTTGGCAGAGggtaagtaaaagtctggcttgaatataatttgttctctcaactatatcaat Alignment from CESAR GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg agaccattaatatcagcactaaatcacactgagtggtctatttttcccagGAATGTTTCTTTTATTCATTGGTGTATGAGCCTGTGCAGAAAACACTACTCACAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAAGCTGCAATTCCAGATCATTTGGCAGAGggtaagtaaaagtctggcttgaatataatttgttctctcaactatatcaat Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG agaccattaatatcagcactaaatcacactgagtggtctatttttcccagGAATGTTTCTTTTATTCATTGGTGTATGAGCCTGTGCAGAAAACACTACTCACAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAAGCTGCAATTCCAGATCATTTGGCAGAGGgtaagtaaaagtctggcttgaatataatttgttctctcaactatatcaat Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG agaccattaatatcagcactaaatcacactgagtggtctatttttcccagGAATGTTTCTTTTATTCATTGGTGTATGAGCCTGTGCAGAAAACACTACTCACAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAAGCTGCAATTCCAGATCATTTGGCAGAGGgtaagtaaaagtctggcttgaatataatttgttctctcaactatatcaat Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG agaccattaatatcagcactaaatcacactgagtggtctatttttcccagGAATGTTTCTTTTATTCATTGGTGTATGAGCCTGTGCAGAAAACACTACTCACAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAAGCTGCAATTCCAGATCATTTGGCAGAGGgtaagtaaaagtctggcttgaatataatttgttctctcaactatatcaat Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG agaccattaatatcagcactaaatcacactgagtggtctatttttcccagGAATGTTTCTTTTATTCATTGGTGTATGAGCCTGTGCAGAAAACACTACTCACAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAAGCTGCAATTCCAGATCATTTGGCAGAGGgtaagtaaaagtctggcttgaatataatttgttctctcaactatatcaat Alignment from Exonerate_coding2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG agaccattaatatcagcactaaatcacactgagtggtctatttttcccagGAATGTTTCTTTTATTCATTGGTGTATGAGCCTGTGCAGAAAACACTACTCACAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAAGCTGCAATTCCAGATCATTTGGCAGAGGgtaagtaaaagtctggcttgaatataatttgttctctcaactatatcaat Alignment from GeneWise GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG agaccattaatatcagcactaaatcacactgagtggtctatttttcccagGAATGTTTCTTTTATTCATTGGTGTATGAGCCTGTGCAGAAAACACTACTCACAGATCAAGGGGAGAGCAGGGTTGGTTGCACATTCCAAGCTGCAATTCCAGATCATTTGGCAGAGGgtaagtaaaagtctggcttgaatataatttgttctctcaactatatcaat #### Mta2_ID2541_14 --> 0 - 1 Original Alignment GAGCCACACTCAAGAGGTCATTTATCCAGACCTGAAGCCCAAAGTCTCTCCCCCTATACAACCAGTGCTAACCGGGCCAAGTTGCTGGCTAAGAACAGGCAAACTTTCTTGCTCCAGACCACAAAGCTAACTCGTCTAGCCAGACGAATGTGCCGAGATCTATTACAGCCAAGGAGGGCTGCCCGAAGACCCTATGCACCTATCAATGCCAATGCCATCAAGGCAGAGt ttggcatcagtggaggcaggctccagccgctgacgtcatttttcttgcagGATCCGCATTTGCAAAGTCATCTATTAAGATCTGAAGCCCAAAGCCTTGCCCCTTATACCACCAGTGCCAACCGGGCAGAGTTGTCAGCTAAAAATAGGCAAACCTTCTTGCTTCAGACAACAAAGCTGACACGTCTGGCCAGACGAATGTGCCGTGATCTCTTACAGCCAAGGAGAGCTGCTCAAAGACCCTATGCTCCTATAAATGCCAATGCAATAAAAGCAGAGtgtacatacttgattaaaggtttggagtcctagtaactaccctgatctaag Alignment from CESAR GAGCCACACTCAAGAGGTCATTTATCCAGACCTGAAGCCCAAAGTCTCTCCCCCTATACAACCAGTGCTAACCGGGCCAAGTTGCTGGCTAAGAACAGGCAAACTTTCTTGCTCCAGACCACAAAGCTAACTCGTCTAGCCAGACGAATGTGCCGAGATCTATTACAGCCAAGGAGGGCTGCCCGAAGACCCTATGCACCTATCAATGCCAATGCCATCAAGGCAGAGt ttggcatcagtggaggcaggctccagccgctgacgtcatttttcttgcagGATCCGCATTTGCAAAGTCATCTATTAAGATCTGAAGCCCAAAGCCTTGCCCCTTATACCACCAGTGCCAACCGGGCAGAGTTGTCAGCTAAAAATAGGCAAACCTTCTTGCTTCAGACAACAAAGCTGACACGTCTGGCCAGACGAATGTGCCGTGATCTCTTACAGCCAAGGAGAGCTGCTCAAAGACCCTATGCTCCTATAAATGCCAATGCAATAAAAGCAGAGtgtacatacttgattaaaggtttggagtcctagtaactaccctgatctaag Alignment from Spaln_aa2Genome GAGCCACACTCAAGAGGTCATTTATCCAGACCTGAAGCCCAAAGTCTCTCCCCCTATACAACCAGTGCTAACCGGGCCAAGTTGCTGGCTAAGAACAGGCAAACTTTCTTGCTCCAGACCACAAAGCTAACTCGTCTAGCCAGACGAATGTGCCGAGATCTATTACAGCCAAGGAGGGCTGCCCGAAGACCCTATGCACCTATCAATGCCAATGCCATCAAGGCAGAGT ttggcatcagtggaggcaggctccagccgctgacgtcatttttcttgcagGATCCGCATTTGCAAAGTCATCTATTAAGATCTGAAGCCCAAAGCCTTGCCCCTTATACCACCAGTGCCAACCGGGCAGAGTTGTCAGCTAAAAATAGGCAAACCTTCTTGCTTCAGACAACAAAGCTGACACGTCTGGCCAGACGAATGTGCCGTGATCTCTTACAGCCAAGGAGAGCTGCTCAAAGACCCTATGCTCCTATAAATGCCAATGCAATAAAAGCAGAGTgtacatacttgattaaaggtttggagtcctagtaactaccctgatctaag Alignment from Spaln_nt2Genome GAGCCACACTCAAGAGGTCATTTATCCAGACCTGAAGCCCAAAGTCTCTCCCCCTATACAACCAGTGCTAACCGGGCCAAGTTGCTGGCTAAGAACAGGCAAACTTTCTTGCTCCAGACCACAAAGCTAACTCGTCTAGCCAGACGAATGTGCCGAGATCTATTACAGCCAAGGAGGGCTGCCCGAAGACCCTATGCACCTATCAATGCCAATGCCATCAAGGCAGAGT ttggcatcagtggaggcaggctccagccgctgacgtcatttttcttgcagGATCCGCATTTGCAAAGTCATCTATTAAGATCTGAAGCCCAAAGCCTTGCCCCTTATACCACCAGTGCCAACCGGGCAGAGTTGTCAGCTAAAAATAGGCAAACCTTCTTGCTTCAGACAACAAAGCTGACACGTCTGGCCAGACGAATGTGCCGTGATCTCTTACAGCCAAGGAGAGCTGCTCAAAGACCCTATGCTCCTATAAATGCCAATGCAATAAAAGCAGAGTgtacatacttgattaaaggtttggagtcctagtaactaccctgatctaag Alignment from Pairagon GAGCCACACTCAAGAGGTCATTTATCCAGACCTGAAGCCCAAAGTCTCTCCCCCTATACAACCAGTGCTAACCGGGCCAAGTTGCTGGCTAAGAACAGGCAAACTTTCTTGCTCCAGACCACAAAGCTAACTCGTCTAGCCAGACGAATGTGCCGAGATCTATTACAGCCAAGGAGGGCTGCCCGAAGACCCTATGCACCTATCAATGCCAATGCCATCAAGGCAGAGT ttggcatcagtggaggcaggctccagccgctgacgtcatttttcttgcagGATCCGCATTTGCAAAGTCATCTATTAAGATCTGAAGCCCAAAGCCTTGCCCCTTATACCACCAGTGCCAACCGGGCAGAGTTGTCAGCTAAAAATAGGCAAACCTTCTTGCTTCAGACAACAAAGCTGACACGTCTGGCCAGACGAATGTGCCGTGATCTCTTACAGCCAAGGAGAGCTGCTCAAAGACCCTATGCTCCTATAAATGCCAATGCAATAAAAGCAGAGTgtacatacttgattaaaggtttggagtcctagtaactaccctgatctaag Alignment from Exonerate_protein2genome GAGCCACACTCAAGAGGTCATTTATCCAGACCTGAAGCCCAAAGTCTCTCCCCCTATACAACCAGTGCTAACCGGGCCAAGTTGCTGGCTAAGAACAGGCAAACTTTCTTGCTCCAGACCACAAAGCTAACTCGTCTAGCCAGACGAATGTGCCGAGATCTATTACAGCCAAGGAGGGCTGCCCGAAGACCCTATGCACCTATCAATGCCAATGCCATCAAGGCAGAGT ttggcatcagtggaggcaggctccagccgctgacgtcatttttcttgcagGATCCGCATTTGCAAAGTCATCTATTAAGATCTGAAGCCCAAAGCCTTGCCCCTTATACCACCAGTGCCAACCGGGCAGAGTTGTCAGCTAAAAATAGGCAAACCTTCTTGCTTCAGACAACAAAGCTGACACGTCTGGCCAGACGAATGTGCCGTGATCTCTTACAGCCAAGGAGAGCTGCTCAAAGACCCTATGCTCCTATAAATGCCAATGCAATAAAAGCAGAGTgtacatacttgattaaaggtttggagtcctagtaactaccctgatctaag Alignment from Exonerate_coding2genome GAGCCACACTCAAGAGGTCATTTATCCAGACCTGAAGCCCAAAGTCTCTCCCCCTATACAACCAGTGCTAACCGGGCCAAGTTGCTGGCTAAGAACAGGCAAACTTTCTTGCTCCAGACCACAAAGCTAACTCGTCTAGCCAGACGAATGTGCCGAGATCTATTACAGCCAAGGAGGGCTGCCCGAAGACCCTATGCACCTATCAATGCCAATGCCATCAAGGCAGAGT ttggcatcagtggaggcaggctccagccgctgacgtcatttttcttgcagGATCCGCATTTGCAAAGTCATCTATTAAGATCTGAAGCCCAAAGCCTTGCCCCTTATACCACCAGTGCCAACCGGGCAGAGTTGTCAGCTAAAAATAGGCAAACCTTCTTGCTTCAGACAACAAAGCTGACACGTCTGGCCAGACGAATGTGCCGTGATCTCTTACAGCCAAGGAGAGCTGCTCAAAGACCCTATGCTCCTATAAATGCCAATGCAATAAAAGCAGAGTgtacatacttgattaaaggtttggagtcctagtaactaccctgatctaag Alignment from GeneWise GAGCCACACTCAAGAGGTCATTTATCCAGACCTGAAGCCCAAAGTCTCTCCCCCTATACAACCAGTGCTAACCGGGCCAAGTTGCTGGCTAAGAACAGGCAAACTTTCTTGCTCCAGACCACAAAGCTAACTCGTCTAGCCAGACGAATGTGCCGAGATCTATTACAGCCAAGGAGGGCTGCCCGAAGACCCTATGCACCTATCAATGCCAATGCCATCAAGGCAGAGT ttggcatcagtggaggcaggctccagccgctgacgtcatttttcttgcagGATCCGCATTTGCAAAGTCATCTATTAAGATCTGAAGCCCAAAGCCTTGCCCCTTATACCACCAGTGCCAACCGGGCAGAGTTGTCAGCTAAAAATAGGCAAACCTTCTTGCTTCAGACAACAAAGCTGACACGTCTGGCCAGACGAATGTGCCGTGATCTCTTACAGCCAAGGAGAGCTGCTCAAAGACCCTATGCTCCTATAAATGCCAATGCAATAAAAGCAGAGTgtacatacttgattaaaggtttggagtcctagtaactaccctgatctaag #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg gctggtgaccctggagacctttctctcccctttcctttcttcttctctaggcTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGAAAATTCACCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGggtacagaggatcacattcccaagctatgtcactttgggccccttgttcat Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg gctggtgaccctggagacctttctctcccctttcctttcttcttctctaggcTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGAAAATTCACCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGggtacagaggatcacattcccaagctatgtcacgaatttctaattctcttt Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gctggtgaccctggagacctttctctcccctttcctttcttcttctctagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGAAAATTCACCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGgtacagaggatcacattcccaagctatgtcactttgggccccttgttcat Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gctggtgaccctggagacctttctctcccctttcctttcttcttctctagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGAAAATTCACCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGgtacagaggatcacattcccaagctatgtcactttgggccccttgttcat Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gctggtgaccctggagacctttctctcccctttcctttcttcttctctagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGAAAATTCACCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGgtacagaggatcacattcccaagctatgtcactttgggccccttgttcat Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gctggtgaccctggagacctttctctcccctttcctttcttcttctctagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGAAAATTCACCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGgtacagaggatcacattcccaagctatgtcactttgggccccttgttcat Alignment from Exonerate_coding2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gctggtgaccctggagacctttctctcccctttcctttcttcttctctagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGAAAATTCACCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGgtacagaggatcacattcccaagctatgtcactttgggccccttgttcat Alignment from GeneWise GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTG--------------------------------------------------- gctggtgaccctggagacctttctctcccctttcctttcttcttctctagGCTCAATCCGATTTCCTAAGTCTGCCAAGACTCCATTGAAAATTCACCCTCTTGTGCGGCTGCCTTTGGCAACTATCATCAAAGATCTGGGTACAGAGGATCACATTCCCAAGCTATGTCACTTTGGGCCCCTTGTTCAT #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ataggatcacattcccaagctatgtcacgaatttctaattctctttttaggtGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACTCAGAACCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtagggtgaccagaacaagagcataccagtaattaccttacttttttctt Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT agaggatcacattcccaagctatgtcacgaatttctaattctctttttaggtGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACTCAGAACCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtagggtgaccagaacaagagcataccagtaattaccttacttttttctt Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ataggatcacattcccaagctatgtcacgaatttctaattctctttttagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACTCAGAACCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtagggtgaccagaacaagagcataccagtaattaccttacttttttctt Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ataggatcacattcccaagctatgtcacgaatttctaattctctttttagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACTCAGAACCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtagggtgaccagaacaagagcataccagtaattaccttacttttttctt Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ataggatcacattcccaagctatgtcacgaatttctaattctctttttagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACTCAGAACCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtagggtgaccagaacaagagcataccagtaattaccttacttttttctt Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ataggatcacattcccaagctatgtcacgaatttctaattctctttttagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACTCAGAACCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtagggtgaccagaacaagagcataccagtaattaccttacttttttctt Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ataggatcacattcccaagctatgtcacgaatttctaattctctttttagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACTCAGAACCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtagggtgaccagaacaagagcataccagtaattaccttacttttttctt Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ataggatcacattcccaagctatgtcacgaatttctaattctctttttagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACTCAGAACCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtagggtgaccagaacaagagcataccagtaattaccttacttttttctt #### Mtl5_ID56_7 --> 0 - 0 Original Alignment GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG taaataccaagatttcctcacaaatgatcatccaccatcttttcttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAGATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGGCATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtaagacaggagataggtattgcctatgctaggttgggcatgtagtgttg Alignment from CESAR GCGTGTCTTGATAGAAATCCT---GAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG taaataccaagatttcctcacaaatgatcatccaccatcttttcttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAGATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGGCATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtaagacaggagataggtattgcctatgctaggttgggcatgtagtgttg Alignment from Spaln_aa2Genome GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG taaataccaagatttcctcacaaatgatcatccaccatcttttcttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAGATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGGCATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtaagacaggagataggtattgcctatgctaggttgggcatgtagtgttg Alignment from Spaln_nt2Genome GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG taaataccaagatttcctcacaaatgatcatccaccatcttttcttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAGATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGGCATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtaagacaggagataggtattgcctatgctaggttgggcatgtagtgttg Alignment from Pairagon GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG taaataccaagatttcctcacaaatgatcatccaccatcttttcttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAGATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGGCATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtaagacaggagataggtattgcctatgctaggttgggcatgtagtgttg Alignment from Exonerate_protein2genome GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG taaataccaagatttcctcacaaatgatcatccaccatcttttcttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAGATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGGCATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtaagacaggagataggtattgcctatgctaggttgggcatgtagtgttg Alignment from Exonerate_coding2genome GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG taaataccaagatttcctcacaaatgatcatccaccatcttttcttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAGATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGGCATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtaagacaggagataggtattgcctatgctaggttgggcatgtagtgttg Alignment from GeneWise GCGTGTCTTGATAGAAATCCT---GAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG taaataccaagatttcctcacaaatgatcatccaccatcttttcttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAGATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGGCATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtaagacaggagataggtattgcctatgctaggttgggcatgtagtgttg #### Mxi1_ID11257_2 --> 2 - 2 Original Alignment agTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACag tgatttattattgtagcctaactatgagtctggtaacttttgtaatgaagagTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACcggtgaggatagtgtgtagacttaaaagtctatgctaatgatggtgtaggta Alignment from CESAR agTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACag tgatttattattgtagcctaactatgagtctggtaacttttgtaatgaagagTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACcggtgaggatagtgtgtagacttaaaagtctatgctaatgatggtgtaggta Alignment from Spaln_aa2Genome AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG tgatttattattgtagcctaactatgagtctggtaacttttgtaatgaagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACCGgtgaggatagtgtgtagacttaaaagtctatgctaatgatggtgtaggta Alignment from Spaln_nt2Genome AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG tgatttattattgtagcctaactatgagtctggtaacttttgtaatgaagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACCGgtgaggatagtgtgtagacttaaaagtctatgctaatgatggtgtaggta Alignment from Pairagon AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG tgatttattattgtagcctaactatgagtctggtaacttttgtaatgaagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACCGgtgaggatagtgtgtagacttaaaagtctatgctaatgatggtgtaggta Alignment from Exonerate_protein2genome AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG tgatttattattgtagcctaactatgagtctggtaacttttgtaatgaagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACCGgtgaggatagtgtgtagacttaaaagtctatgctaatgatggtgtaggta Alignment from Exonerate_coding2genome AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG tgatttattattgtagcctaactatgagtctggtaacttttgtaatgaagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACCGgtgaggatagtgtgtagacttaaaagtctatgctaatgatggtgtaggta Alignment from GeneWise AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG tgatttattattgtagcctaactatgagtctggtaacttttgtaatgaagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACCGgtgaggatagtgtgtagacttaaaagtctatgctaatgatggtgtaggta #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagcCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAAAAAAGGCCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from CESAR cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagcCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAAAAAAGGCCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAAAAAAGGCCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAAAAAAGGCCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAAAAAAGGCCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAAAAAAGGCCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAAAAAAGGCCCCCCAGGCTTGCCAATAAGgcaagtcggtccaacagccacatacacttctacccattcatagagttgcc Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGTCATCGCCAGCGG ggaaagatccgcaggtgttttatgcatttactaaattgaatgttttgtagCCATGCTGGTAGTGAATTTAGTAGGACTGGCAGTGTCCCTCACAAAAAAAGGCCCCCCAGGCTTGCCAATAAG---------GCAAgtcggtccaacagccacatacacttctacccattcat #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAAT---GGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagggATCCTTGCGCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCC---AATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagggATCCTTGCGCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCC---AATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAA---TGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGC---CAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCC---AATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCC---AATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCC---AATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcctggtaaagtagagtgttgactgcagacttactctcctctctttgcagGGATCCTTGCGCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTCACAAAAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtgagcttacaggatctgcagcttaggcatggtatcttgcatctagctgt #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgcccctcaaccactggagccctgtgcctgtccttattttgctctgtagGTGGATGCCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTCCTACTAGTGCAGGCATTGAAGCCACTGCACCAGAGACTggtaagtatgtgtgtaagggttcctagctatgcctggctttttcttgttaa Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgcccctcaaccactggagccctgtgcctgtccttattttgctctgtagGTGGATGCCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTCCTACTAGTGCAGGCATTGAAGCCACTGCACCAGAGACTggtaagtatgtgtgtaagggttcctagctatgcctggctttttcttgttaa Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgcccctcaaccactggagccctgtgcctgtccttattttgctctgtagGTGGATGCCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTCCTACTAGTGCAGGCATTGAAGCCACTGCACCAGAGACTGgtaagtatgtgtgtaagggttcctagctatgcctggctttttcttgttaa Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgcccctcaaccactggagccctgtgcctgtccttattttgctctgtagGTGGATGCCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTCCTACTAGTGCAGGCATTGAAGCCACTGCACCAGAGACTGgtaagtatgtgtgtaagggttcctagctatgcctggctttttcttgttaa Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgcccctcaaccactggagccctgtgcctgtccttattttgctctgtagGTGGATGCCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTCCTACTAGTGCAGGCATTGAAGCCACTGCACCAGAGACTGgtaagtatgtgtgtaagggttcctagctatgcctggctttttcttgttaa Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgcccctcaaccactggagccctgtgcctgtccttattttgctctgtagGTGGATGCCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTCCTACTAGTGCAGGCATTGAAGCCACTGCACCAGAGACTGgtaagtatgtgtgtaagggttcctagctatgcctggctttttcttgttaa Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgcccctcaaccactggagccctgtgcctgtccttattttgctctgtagGTGGATGCCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTCCTACTAGTGCAGGCATTGAAGCCACTGCACCAGAGACTGgtaagtatgtgtgtaagggttcctagctatgcctggctttttcttgttaa Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgcccctcaaccactggagccctgtgcctgtccttattttgctctgtagGTGGATGCCACTGAACACCTAAAGAGGATCTCACGGACACGTCTAGTGCACTACAGGTACAAGCCAGAGTTTCCTACTAGTGCAGGCATTGAAGCCACTGCACCAGAGACTGgtaagtatgtgtgtaagggttcctagctatgcctggctttttcttgttaa #### Myrf_ID2737_3 --> 1 - 2 Original Alignment cTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCC------CCAgg tatcatagtatctacttaggattcgagctcctgtttcctcattaccacagcTGCTTCCCTGAGCTATCTCCACTGGCTAGTACTGCCTTCTTCCCTAAAGGGCCCCTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTGC---------CTACCACCCCCAACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTTTGGGAGGTCCTGGTCTCTCAATTAAAGCTGAGCCTGAGGCAGTTTATGCACGTGCACCCgggtgagtggcagtcatcgggcagtcctaacaaacaatatttgctcaaaggt Alignment from CESAR cTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAgg tatcatagtatctacttaggattcgagctcctgtttcctcattaccacagcTGCTTCCCTGAGCTATCTCCACTGGCTAGTACTGCCTTCTTCCCTAAAGGGCCCCTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTGC---------CTACCACCCCCAACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTTTGGGAGGTCCTGGTCTCTCAATTAAAGCTGAGCCTGAGGCAGTTTATGCACGTGCACCCgggtgagtggcagtcatcgggcagtcctaacaaacaatatttgctcaaaggt Alignment from Spaln_aa2Genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAGG tatcatagtatctacttaggattcgagctcctgtttcctcattaccacagCTGCTTCCCTGAGCTATCTCCACTGGCTAGTACTGCCTTCTTCCCTAAAGGGCCCCTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTGC---------CTACCACCCCCAACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTTTGGGAGGTCCTGGTCTCTCAATTAAAGCTGAGCCTGAGGCAGTTTATGCACGTGCACCCGGgtgagtggcagtcatcgggcagtcctaacaaacaatatttgctcaaaggt Alignment from Spaln_nt2Genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGC-------CCCAG tatcatagtatctacttaggattcgagctcctgtttcctcattaccacagCTGCTTCCCTGAGCTATCTCCACTGGCTAGTACTGCCTTCTTCCCTAAAGGGCCCCTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTG---------CCTACCACCCCCAACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTTTGGGAGGTCCTGGTCTCTCAATTAAAGCTGAGCCTGAGGCAGTTTATGCACGTGCACCCGGgtgagtggcagtcatcgggcagtcctaacaaacaatatttgctcaaaggt Alignment from Pairagon CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTA------TGCCCCAGG tatcatagtatctacttaggattcgagctcctgtttcctcattaccacagCTGCTTCCCTGAGCTATCTCCACTGGCTAGTACTGCCTTCTTCCCTAAAGGGCCCCTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTGCC---------TACCACCCCCAACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTTTGGGAGGTCCTGGTCTCTCAATTAAAGCTGAGCCTGAGGCAGTTTATGCACGTGCACCCGGgtgagtggcagtcatcgggcagtcctaacaaacaatatttgctcaaaggt Alignment from Exonerate_protein2genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAGG tatcatagtatctacttaggattcgagctcctgtttcctcattaccacagCTGCTTCCCTGAGCTATCTCCACTGGCTAGTACTGCCTTCTTCCCTAAAGGGCCCCTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCT---------GGGTGCCTACCACCCCCAACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTTTGGGAGGTCCTGGTCTCTCAATTAAAGCTGAGCCTGAGGCAGTTTATGCACGTGCACCCGGgtgagtggcagtcatcgggcagtcctaacaaacaatatttgctcaaaggt Alignment from Exonerate_coding2genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAGG tatcatagtatctacttaggattcgagctcctgtttcctcattaccacagCTGCTTCCCTGAGCTATCTCCACTGGCTAGTACTGCCTTCTTCCCTAAAGGGCCCCTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCT---------GGGTGCCTACCACCCCCAACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTTTGGGAGGTCCTGGTCTCTCAATTAAAGCTGAGCCTGAGGCAGTTTATGCACGTGCACCCGGgtgagtggcagtcatcgggcagtcctaacaaacaatatttgctcaaaggt Alignment from GeneWise CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCC------CCAGG tatcatagtatctacttaggattcgagctcctgtttcctcattaccacagCTGCTTCCCTGAGCTATCTCCACTGGCTAGTACTGCCTTCTTCCCTAAAGGGCCCCTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTGC---------CTACCACCCCCAACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTTTGGGAGGTCCTGGTCTCTCAATTAAAGCTGAGCCTGAGGCAGTTTATGCACGTGCACCCGGgtgagtggcagtcatcgggcagtcctaacaaacaatatttgctcaaaggt #### Naa40_ID2078_2 --> 0 - 0 Original Alignment AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAG---GAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG tctgtccaaaacttttttaaagtcttaatatgttccttctgtcccttcagCGTAAGTTGAGCAAGGCTAAAGAAACCAAACAGAAACGAGTGGAGGAAAAGAGAGCATGTATGGATACTGTATGTGCCAAGGTAGATGCTGTGATCAGGgttagtgtgagaataagccctgcatcacaagctccttgtgactctggatt Alignment from CESAR AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAG---AGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG tctgtccaaaacttttttaaagtcttaatatgttccttctgtcccttcagCGTAAGTTGAGCAAGGCTAAAGAAACCAAACAGAAACGAGTGGAGGAAAAGAGAGCATGTATGGATACTGTATGTGCCAAGGTAGATGCTGTGATCAGGgttagtgtgagaataagccctgcatcacaagctccttgtgactctggatt Alignment from Spaln_aa2Genome GGG AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAG---AGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG TCTgtccaaaacttttttaaagtcttaatatgttccttctgtcccttcagCGTAAGTTGAGCAAGGCTAAAGAAACCAAACAGAAACGAGTGGAGGAAAAGAGAGCATGTATGGATACTGTATGTGCCAAGGTAGATGCTGTGATCAGGgttagtgtgagaataagccctgcatcacaagctccttgtgactctggatt Alignment from Spaln_nt2Genome AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAG---AGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG tctgtccaaaacttttttaaagtcttaatatgttccttctgtcccttcagCGTAAGTTGAGCAAGGCTAAAGAAACCAAACAGAAACGAGTGGAGGAAAAGAGAGCATGTATGGATACTGTATGTGCCAAGGTAGATGCTGTGATCAGGgttagtgtgagaataagccctgcatcacaagctccttgtgactctggatt Alignment from Pairagon AAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGG---AGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG tctgtccaaaacttttttaaagtcttaatatgttccttctgtcccttcagcgtAAGTTGAGCAAGGCTAAAGAAACCAAACAGAAACGAGTGGAGGAAAAGAGAGCATGTATGGATACTGTATGTGCCAAGGTAGATGCTGTGATCAGGgttagtgtgagaataagccctgcatcacaagctccttgtgactctggatt Alignment from Exonerate_protein2genome AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAG---AGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG tctgtccaaaacttttttaaagtcttaatatgttccttctgtcccttcagCGTAAGTTGAGCAAGGCTAAAGAAACCAAACAGAAACGAGTGGAGGAAAAGAGAGCATGTATGGATACTGTATGTGCCAAGGTAGATGCTGTGATCAGGgttagtgtgagaataagccctgcatcacaagctccttgtgactctggatt Alignment from Exonerate_coding2genome tctgtccaaaacttttttaaagtcttaatatgttccttctgtcccttcagcgtaagttgagcaaggctaaagaaaccaaacagaaacgagtggaggaaaagagagcatgtatggatactgtatgtgccaaggtagatgctgtgatcagggttagtgtgagaataagccctgcatcacaagctccttgtgactctggatt Alignment from GeneWise GGGAGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAG---AGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG tctgtccaaaacttttttaaagtcttaatatgttccttctgtcccttcag---CGTAAGTTGAGCAAGGCTAAAGAAACCAAACAGAAACGAGTGGAGGAAAAGAGAGCATGTATGGATACTGTATGTGCCAAGGTAGATGCTGTGATCAGGgttagtgtgagaataagccctgcatcacaagctccttgtgactctggatt #### Naaladl1_ID1449_8 --> 2 - 1 Original Alignment atCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGg ggacatctgttgactaaagcatgaatacagagtctgcttctctcgcacaggtCGATATGTAATCTATGGGAACCACCAAGATATCTGGGTACATGGGGTGTTGGACCCTAGTAGTGGGACTGCTATCCTATTAGAGATTGCTCAGGTGTCAAGCACTTTGCTAAGAAAGggtgagaccaccttctctcctttgtccctggtctggtagctggggtattac Alignment from CESAR atCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGg ggacatctgttgactaaagcatgaatacagagtctgcttctctcgcacaggtCGATATGTAATCTATGGGAACCACCAAGATATCTGGGTACATGGGGTGTTGGACCCTAGTAGTGGGACTGCTATCCTATTAGAGATTGCTCAGGTGTCAAGCACTTTGCTAAGAAAGggtgagaccaccttctctcctttgtccctggtctggtagctggggtattac Alignment from Spaln_aa2Genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG ggacatctgttgactaaagcatgaatacagagtctgcttctctcgcacagGTCGATATGTAATCTATGGGAACCACCAAGATATCTGGGTACATGGGGTGTTGGACCCTAGTAGTGGGACTGCTATCCTATTAGAGATTGCTCAGGTGTCAAGCACTTTGCTAAGAAAGGgtgagaccaccttctctcctttgtccctggtctggtagctggggtattac Alignment from Spaln_nt2Genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG ggacatctgttgactaaagcatgaatacagagtctgcttctctcgcacagGTCGATATGTAATCTATGGGAACCACCAAGATATCTGGGTACATGGGGTGTTGGACCCTAGTAGTGGGACTGCTATCCTATTAGAGATTGCTCAGGTGTCAAGCACTTTGCTAAGAAAGGgtgagaccaccttctctcctttgtccctggtctggtagctggggtattac Alignment from Pairagon ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG ggacatctgttgactaaagcatgaatacagagtctgcttctctcgcacagGTCGATATGTAATCTATGGGAACCACCAAGATATCTGGGTACATGGGGTGTTGGACCCTAGTAGTGGGACTGCTATCCTATTAGAGATTGCTCAGGTGTCAAGCACTTTGCTAAGAAAGGgtgagaccaccttctctcctttgtccctggtctggtagctggggtattac Alignment from Exonerate_protein2genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG ggacatctgttgactaaagcatgaatacagagtctgcttctctcgcacagGTCGATATGTAATCTATGGGAACCACCAAGATATCTGGGTACATGGGGTGTTGGACCCTAGTAGTGGGACTGCTATCCTATTAGAGATTGCTCAGGTGTCAAGCACTTTGCTAAGAAAGGgtgagaccaccttctctcctttgtccctggtctggtagctggggtattac Alignment from Exonerate_coding2genome ggacatctgttgactaaagcatgaatacagagtctgcttctctcgcacaggtcgatatgtaatctatgggaaccaccaagatatctgggtacatggggtgttggaccctagtagtgggactgctatcctattagagattgctcaggtgtcaagcactttgctaagaaagggtgagaccaccttctctcctttgtccctggtctggtagctggggtattac Alignment from GeneWise ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG ggacatctgttgactaaagcatgaatacagagtctgcttctctcgcacagGTCGATATGTAATCTATGGGAACCACCAAGATATCTGGGTACATGGGGTGTTGGACCCTAGTAGTGGGACTGCTATCCTATTAGAGATTGCTCAGGTGTCAAGCACTTTGCTAAGAAAGGgtgagaccaccttctctcctttgtccctggtctggtagctggggtattac #### Naaladl1_ID1451_10 --> 0 - 1 Original Alignment GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt accagcagggtcaggaaaagggtgggaatttacttttggatttcctttagGAATCACTCAGCAAATTGCAGGAGCATACAGTCGACTACATCAATGTTGACATTTCTGTTTTTtgttccatatgactgatcagctgagctaggtaatcatgagcactttctcag Alignment from CESAR GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt accagcagggtcaggaaaagggtgggaatttacttttggatttcctttagGAATCACTCAGCAAATTGCAGGAGCATACAGTCGACTACATCAATGTTGACATTTCTGTTTTTtgttccatatgactgatcagctgagctaggtaatcatgagcactttctcag Alignment from Spaln_aa2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT accagcagggtcaggaaaagggtgggaatttacttttggatttcctttagGAATCACTCAGCAAATTGCAGGAGCATACAGTCGACTACATCAATGTTGACATTTCTGTTTTTTgttccatatgactgatcagctgagctaggtaatcatgagcactttctcag Alignment from Spaln_nt2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT accagcagggtcaggaaaagggtgggaatttacttttggatttcctttagGAATCACTCAGCAAATTGCAGGAGCATACAGTCGACTACATCAATGTTGACATTTCTGTTTTTTgttccatatgactgatcagctgagctaggtaatcatgagcactttctcag Alignment from Pairagon GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT accagcagggtcaggaaaagggtgggaatttacttttggatttcctttagGAATCACTCAGCAAATTGCAGGAGCATACAGTCGACTACATCAATGTTGACATTTCTGTTTTTTgttccatatgactgatcagctgagctaggtaatcatgagcactttctcag Alignment from Exonerate_protein2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT accagcagggtcaggaaaagggtgggaatttacttttggatttcctttagGAATCACTCAGCAAATTGCAGGAGCATACAGTCGACTACATCAATGTTGACATTTCTGTTTTTTgttccatatgactgatcagctgagctaggtaatcatgagcactttctcag Alignment from Exonerate_coding2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCTCCAATGCTACCCTCCGG------GCACAGGGAACACCTCCTGTACAAAGT accagcagggtcaggaaaagggtgggaatttacttttggatttcctttagGAATCACTCAGCAAATTGCAGGAGCATACAGTCGACTACATCAATGTTGACATTTCTGTTTTTTGTTCCATATGACTGATCAGCTGAGCTAGGTAATCATGAGCACTTTCTCAG Alignment from GeneWise GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT accagcagggtcaggaaaagggtgggaatttacttttggatttcctttagGAATCACTCAGCAAATTGCAGGAGCATACAGTCGACTACATCAATGTTGACATTTCTGTTTTTTgttccatatgactgatcagctgagctaggtaatcatgagcactttctcag #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gaaggtgaaacttggatttggtctctattagccaccatcttgtcttacaggcTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTGCAAAGTTTTCTTCAGGCAGCACAAGAAGCCCTTGGTACTCAATTAGAAAAGCAGAATGTAAGCTTGggtgagccccaacatcttgagcccccagcggtggaatctacagaggcaagt Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gaaggtgaaacttggatttggtctctattagccaccatcttgtcttacaggcTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTGCAAAGTTTTCTTCAGGCAGCACAAGAAGCCCTTGGTACTCAATTAGAAAAGCAGAATGTAAGCTTGggtgagccccaacatcttgagcccccagcggtggaatctacagaggcaagt Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gaaggtgaaacttggatttggtctctattagccaccatcttgtcttacagGCTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTGCAAAGTTTTCTTCAGGCAGCACAAGAAGCCCTTGGTACTCAATTAGAAAAGCAGAATGTAAGCTTGGgtgagccccaacatcttgagcccccagcggtggaatctacagaggcaagt Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gaaggtgaaacttggatttggtctctattagccaccatcttgtcttacagGCTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTGCAAAGTTTTCTTCAGGCAGCACAAGAAGCCCTTGGTACTCAATTAGAAAAGCAGAATGTAAGCTTGGgtgagccccaacatcttgagcccccagcggtggaatctacagaggcaagt Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gaaggtgaaacttggatttggtctctattagccaccatcttgtcttacagGCTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTGCAAAGTTTTCTTCAGGCAGCACAAGAAGCCCTTGGTACTCAATTAGAAAAGCAGAATGTAAGCTTGGgtgagccccaacatcttgagcccccagcggtggaatctacagaggcaagt Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gaaggtgaaacttggatttggtctctattagccaccatcttgtcttacagGCTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTGCAAAGTTTTCTTCAGGCAGCACAAGAAGCCCTTGGTACTCAATTAGAAAAGCAGAATGTAAGCTTGGgtgagccccaacatcttgagcccccagcggtggaatctacagaggcaagt Alignment from Exonerate_coding2genome gaaggtgaaacttggatttggtctctattagccaccatcttgtcttacaggctttagtagccagcaggctgttgcccggactgctgggagtgtgcttctccagctcagtgatagcctcttcctgcccctaaatgttagtgactatagtgagaccttgcaaagttttcttcaggcagcacaagaagcccttggtactcaattagaaaagcagaatgtaagcttgggtgagccccaacatcttgagcccccagcggtggaatctacagaggcaagt Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gaaggtgaaacttggatttggtctctattagccaccatcttgtcttacagGCTTTAGTAGCCAGCAGGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTGCAAAGTTTTCTTCAGGCAGCACAAGAAGCCCTTGGTACTCAATTAGAAAAGCAGAATGTAAGCTTGGgtgagccccaacatcttgagcccccagcggtggaatctacagaggcaagt #### Ndufb8_ID9059_2 --> 2 - 2 Original Alignment ccTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGgg cgttgtggttctgggcctttaaggactaattttctggtactccattttagctTTCCATATGACAAAAGACATGGTACCAGGATCATATTCTAGGACACCAGAGGAGCATTCTACTGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGgggtttgcatattggctggctctatttcacatagtagtaggcaatgggaatt Alignment from CESAR ccTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGgg cgttgtggttctgggcctttaaggactaattttctggtactccattttagctTTCCATATGACAAAAGACATGGTACCAGGATCATATTCTAGGACACCAGAGGAGCATTCTACTGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGgggtttgcatattggctggctctatttcacatagtagtaggcaatgggaatt Alignment from Spaln_aa2Genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cgttgtggttctgggcctttaaggactaattttctggtactccattttagCTTTCCATATGACAAAAGACATGGTACCAGGATCATATTCTAGGACACCAGAGGAGCATTCTACTGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtttgcatattggctggctctatttcacatagtagtaggcaatgggaatt Alignment from Spaln_nt2Genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cgttgtggttctgggcctttaaggactaattttctggtactccattttagCTTTCCATATGACAAAAGACATGGTACCAGGATCATATTCTAGGACACCAGAGGAGCATTCTACTGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtttgcatattggctggctctatttcacatagtagtaggcaatgggaatt Alignment from Pairagon CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cgttgtggttctgggcctttaaggactaattttctggtactccattttagCTTTCCATATGACAAAAGACATGGTACCAGGATCATATTCTAGGACACCAGAGGAGCATTCTACTGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtttgcatattggctggctctatttcacatagtagtaggcaatgggaatt Alignment from Exonerate_protein2genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cgttgtggttctgggcctttaaggactaattttctggtactccattttagCTTTCCATATGACAAAAGACATGGTACCAGGATCATATTCTAGGACACCAGAGGAGCATTCTACTGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtttgcatattggctggctctatttcacatagtagtaggcaatgggaatt Alignment from Exonerate_coding2genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cgttgtggttctgggcctttaaggactaattttctggtactccattttagCTTTCCATATGACAAAAGACATGGTACCAGGATCATATTCTAGGACACCAGAGGAGCATTCTACTGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtttgcatattggctggctctatttcacatagtagtaggcaatgggaatt Alignment from GeneWise CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cgttgtggttctgggcctttaaggactaattttctggtactccattttagCTTTCCATATGACAAAAGACATGGTACCAGGATCATATTCTAGGACACCAGAGGAGCATTCTACTGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtttgcatattggctggctctatttcacatagtagtaggcaatgggaatt #### Ndufs8_ID192_4 --> 2 - 0 Original Alignment gaCTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG aataatattttcattctccgtgaggtcaacactgcctgtccatcccacaggtTTAGGCATGACCCTAGGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAAGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCGTTGCGCCGCTACCCAACAGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGTCCTGCACAGgtaagatagagcccagccctgagtaagttcttgctcagaatcaaccatta Alignment from CESAR gaCTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG aataatattttcattctccgtgaggtcaacactgcctgtccatcccacaggtTTAGGCATGACCCTAGGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAAGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCGTTGCGCCGCTACCCAACAGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGTCCTGCACAGgtaagatagagcccagccctgagtaagttcttgctcagaatcaaccatta Alignment from Spaln_aa2Genome GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG aataatattttcattctccgtgaggtcaacactgcctgtccatcccacagGTTTAGGCATGACCCTAGGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAAGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCGTTGCGCCGCTACCCAACAGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGTCCTGCACAGgtaagatagagcccagccctgagtaagttcttgctcagaatcaaccatta Alignment from Spaln_nt2Genome GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG aataatattttcattctccgtgaggtcaacactgcctgtccatcccacagGTTTAGGCATGACCCTAGGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAAGGCACACTGAGTC---GCTTCCGTGGGGGGCATGCGTTGCGCCGCTACCCAACAGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGTCCTGCACAGgtaagatagagcccagccctgagtaagttcttgctcagaatcaaccatta Alignment from Pairagon GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG aataatattttcattctccgtgaggtcaacactgcctgtccatcccacagGTTTAGGCATGACCCTAGGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAAGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCGTTGCGCCGCTACCCAACAGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGTCCTGCACAGgtaagatagagcccagccctgagtaagttcttgctcagaatcaaccatta Alignment from Exonerate_protein2genome GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG aataatattttcattctccgtgaggtcaacactgcctgtccatcccacagGTTTAGGCATGACCCTAGGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAAGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCGTTGCGCCGCTACCCAACAGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGTCCTGCACAGgtaagatagagcccagccctgagtaagttcttgctcagaatcaaccatta Alignment from Exonerate_coding2genome GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG aataatattttcattctccgtgaggtcaacactgcctgtccatcccacagGTTTAGGCATGACCCTAGGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAAGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCGTTGCGCCGCTACCCAACAGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGTCCTGCACAGgtaagatagagcccagccctgagtaagttcttgctcagaatcaaccatta Alignment from GeneWise GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG aataatattttcattctccgtgaggtcaacactgcctgtccatcccacagGTTTAGGCATGACCCTAGGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAAGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCGTTGCGCCGCTACCCAACAGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGTCCTGCACAGgtaagatagagcccagccctgagtaagttcttgctcagaatcaaccatta #### Ndufs8_ID193_3 --> 2 - 1 Original Alignment agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATT---CTGATGTGGACAGAACTCATCCGAg ccaggattctaacgattaatttccttgttccattccaccttgttcctcagagTATGTAAACAAAAAAGAGCAAGAGGCAGAAGTAGACATGAAGGCAGGT---GACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGggtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from CESAR agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAg ccaggattctaacgattaatttccttgttccattccaccttgttcctcagagTATGTAAACAAAAAAGAGCAAGAGGCAGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGggtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from Spaln_aa2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCAAGAGGCAGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from Spaln_nt2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCAAGAGGCAGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from Pairagon AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTC---TGATGTGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCAAGAGGCAGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from Exonerate_protein2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCAAGAGGCAGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from Exonerate_coding2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCAAGAGGCAGAAGTAGACATGAAGGCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg Alignment from GeneWise AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG ccaggattctaacgattaatttccttgttccattccaccttgttcctcagAGTATGTAAACAAAAAAGAGCAAGAGGCAGAAGTAGACATGAAG---GCAGGTGACAATGCTGCACAGATTCTGATGATGTGGACAGAAATAATCCGGGgtaagtttcaatgcaggattctacggtgaaaatttaagactaatatggtg #### Ndufs8_ID194_2 --> 2 - 1 Original Alignment gaCATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACa tgtgtgaatttaaggaacagatcttccagaccatcccttctgcccttcaggaCATCTAAATGGACAGAGCCTACACAGCAGTGCTGTGGCATCAATGTACagtgagtggctgaagttaagatctggctcacatgagctacagaaccagcag Alignment from CESAR gaCATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACa tgtgtgaatttaaggaacagatcttccagaccatcccttctgcccttcaggaCATCTAAATGGACAGAGCCTACACAGCAGTGCTGTGGCATCAATGTACagtgagtggctgaagttaagatctggctcacatgagctacagaaccagcag Alignment from Spaln_aa2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA tgtgtgaatttaaggaacagatcttccagaccatcccttctgcccttcagGACATCTAAATGGACAGAGCCTACACAGCAGTGCTGTGGCATCAATGTACAgtgagtggctgaagttaagatctggctcacatgagctacagaaccagcag Alignment from Spaln_nt2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA tgtgtgaatttaaggaacagatcttccagaccatcccttctgcccttcagGACATCTAAATGGACAGAGCCTACACAGCAGTGCTGTGGCATCAATGTACAgtgagtggctgaagttaagatctggctcacatgagctacagaaccagcag Alignment from Pairagon GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA tgtgtgaatttaaggaacagatcttccagaccatcccttctgcccttcagGACATCTAAATGGACAGAGCCTACACAGCAGTGCTGTGGCATCAATGTACAgtgagtggctgaagttaagatctggctcacatgagctacagaaccagcag Alignment from Exonerate_protein2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA tgtgtgaatttaaggaacagatcttccagaccatcccttctgcccttcagGACATCTAAATGGACAGAGCCTACACAGCAGTGCTGTGGCATCAATGTACAgtgagtggctgaagttaagatctggctcacatgagctacagaaccagcag Alignment from Exonerate_coding2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA tgtgtgaatttaaggaacagatcttccagaccatcccttctgcccttcagGACATCTAAATGGACAGAGCCTACACAGCAGTGCTGTGGCATCAATGTACAgtgagtggctgaagttaagatctggctcacatgagctacagaaccagcag Alignment from GeneWise GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA tgtgtgaatttaaggaacagatcttccagaccatcccttctgcccttcagGACATCTAAATGGACAGAGCCTACACAGCAGTGCTGTGGCATCAATGTACAgtgagtggctgaagttaagatctggctcacatgagctacagaaccagcag #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG gcaaattcaaatctcgaagtaagtggctacagctgtcctgtcttctgcagggGTAGAGTGGATGAACACAGTTGTGGCCAGATTTGTTGAGGGTGATTCTTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCCGTAAACAGATTGAGAGCCATACCACCTGTACCCTAGGTGGCGGAGCC---TGGCCAGTGCAGgtaaggcagacctttgcttttctcacaatttctgtattattcaaggcact Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG gcaaattcaaatctcgaagtaagtggctacagctgtcctgtcttctgcagggGTAGAGTGGATGAACACAGTTGTGGCCAGATTTGTTGAGGGTGATTCTTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCCGTAAACAGATTGAGAGCCATACCACCTGTACCCTAGGTGGCGGA---GCCTGGCCAGTGCAGgtaaggcagacctttgcttttctcacaatttctgtattattcaaggcact Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG gcaaattcaaatctcgaagtaagtggctacagctgtcctgtcttctgcagGGGTAGAGTGGATGAACACAGTTGTGGCCAGATTTGTTGAGGGTGATTCTTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCCGTAAACAGATTGAGAGCCATACCACCTGTACCCTAGGT---GGCGGAGCCTGGCCAGTGCAGgtaaggcagacctttgcttttctcacaatttctgtattattcaaggcact Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG gcaaattcaaatctcgaagtaagtggctacagctgtcctgtcttctgcagGGGTAGAGTGGATGAACACAGTTGTGGCCAGATTTGTTGAGGGTGATTCTTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCCGTAAACAGATTGAGAGCCATACCACCTGTACCCTAGG---TGGCGGAGCCTGGCCAGTGCAGgtaaggcagacctttgcttttctcacaatttctgtattattcaaggcact Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG gcaaattcaaatctcgaagtaagtggctacagctgtcctgtcttctgcagGGGTAGAGTGGATGAACACAGTTGTGGCCAGATTTGTTGAGGGTGATTCTTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCCGTAAACAGATTGAGAGCCATACCACCTGTACCCTAGGTGGCGGA---GCCTGGCCAGTGCAGgtaaggcagacctttgcttttctcacaatttctgtattattcaaggcact Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG gcaaattcaaatctcgaagtaagtggctacagctgtcctgtcttctgcagGGGTAGAGTGGATGAACACAGTTGTGGCCAGATTTGTTGAGGGTGATTCTTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCCGTAAACAGATTGAGAGCCATACCACCTGTACCCTAGGT---GGCGGAGCCTGGCCAGTGCAGgtaaggcagacctttgcttttctcacaatttctgtattattcaaggcact Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG gcaaattcaaatctcgaagtaagtggctacagctgtcctgtcttctgcagGGGTAGAGTGGATGAACACAGTTGTGGCCAGATTTGTTGAGGGTGATTCTTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCCGTAAACAGATTGAGAGCCATACCACCTGTACCCTAGGT---GGCGGAGCCTGGCCAGTGCAGgtaaggcagacctttgcttttctcacaatttctgtattattcaaggcact Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG gcaaattcaaatctcgaagtaagtggctacagctgtcctgtcttctgcagGGGTAGAGTGGATGAACACAGTTGTGGCCAGATTTGTTGAGGGTGATTCTTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCCGTAAACAGATTGAGAGCCATACCACCTGTACCCTAGGT---GGCGGAGCCTGGCCAGTGCAGgtaaggcagacctttgcttttctcacaatttctgtattattcaaggcact #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG ggggtgcttgcaaagaatgcttcttacatttattgtaatgtctcttataggtGGTGTAACAGGCGGCTGGGACAATCTGCTTGCTGTGACACCAGGTGGATCATCC---ACATTAATTCCCAAATCTGTTTGTGAGACAGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCCACAGTAATC---ATGGATCGTTTGgtaagtggtcataagcaccctcatgcttgtcactatgatgtgtgtttttt Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG ggggtgcttgcaaagaatgcttcttacatttattgtaatgtctcttataggtGGTGTAACAGGCGGCTGGGACAATCTGCTTGCTGTGACACCAGGTGGATCATCCACA---TTAATTCCCAAATCTGTTTGTGAGACAGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCCACAGTAATC---ATGGATCGTTTGgtaagtggtcataagcaccctcatgcttgtcactatgatgtgtgtttttt Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG ggggtgcttgcaaagaatgcttcttacatttattgtaatgtctcttatagGTGGTGTAACAGGCGGCTGGGACAATCTGCTTGCTGTGACACCAGGTGGATCATCCACA---TTAATTCCCAAATCTGTTTGTGAGACAGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCCACAGTAATC---ATGGATCGTTTGgtaagtggtcataagcaccctcatgcttgtcactatgatgtgtgtttttt Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG ggggtgcttgcaaagaatgcttcttacatttattgtaatgtctcttatagGTGGTGTAACAGGCGGCTGGGACAATCTGCTTGCTGTGACACCAGGTGGATCATCCA---CATTAATTCCCAAATCTGTTTGTGAGACAGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCCACAGTAA---TCATGGATCGTTTGgtaagtggtcataagcaccctcatgcttgtcactatgatgtgtgtttttt Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG ggggtgcttgcaaagaatgcttcttacatttattgtaatgtctcttatagGTGGTGTAACAGGCGGCTGGGACAATCTGCTTGCTGTGACACCAGGTGGATCATCCA---CATTAATTCCCAAATCTGTTTGTGAGACAGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCCACAGTAA---TCATGGATCGTTTGgtaagtggtcataagcaccctcatgcttgtcactatgatgtgtgtttttt Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG ggggtgcttgcaaagaatgcttcttacatttattgtaatgtctcttatagGTGGTGTAACAGGCGGCTGGGACAATCTGCTTGCTGTGACACCAGGTGGATCATCCACA---TTAATTCCCAAATCTGTTTGTGAGACAGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCCACAGTAATC---ATGGATCGTTTGgtaagtggtcataagcaccctcatgcttgtcactatgatgtgtgtttttt Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG ggggtgcttgcaaagaatgcttcttacatttattgtaatgtctcttatagGTGGTGTAACAGGCGGCTGGGACAATCTGCTTGCTGTGACACCAGGTGGATCATCCACA---TTAATTCCCAAATCTGTTTGTGAGACAGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCCACAGTAATC---ATGGATCGTTTGgtaagtggtcataagcaccctcatgcttgtcactatgatgtgtgtttttt Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG ggggtgcttgcaaagaatgcttcttacatttattgtaatgtctcttatagGTGGTGTAACAGGCGGCTGGGACAATCTGCTTGCTGTGACACCAGGTGGATCATCCACA---TTAATTCCCAAATCTGTTTGTGAGACAGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCCACAGTAATC---ATGGATCGTTTGgtaagtggtcataagcaccctcatgcttgtcactatgatgtgtgtttttt #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGT---GCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg ttgtaatcacagagtgcaaggttatccctctggcatatttccttctccagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACACGAA---TCCGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAAGAGCTCAGGGCAGGAGGAGCAGCTGCCCCTGAGCTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCTGAGTTTGAGggtaagtgctaaaagccatggcatgatgaatccagaagtgtcagtagtcag Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCA---GGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg ttgtaatcacagagtgcaaggttatccctctggcatatttccttctccagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCCGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAAGAGCTCAGGGCAGGAGGAGCAGCTGCCCCTGAGCTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCTGAGTTTGAGggtaagtgctaaaagccatggcatgatgaatccagaagtgtcagtagtcag Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGG CAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaatcacagagtgcaaggttatccctctggcatatttccttctccagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCCGCACTCCACCTGGCTCACACCTgtgaaaatttcttgccatcttggacctctcaagagctcagggcagGAGGAGCAGCTGCCCCTGAGCTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCTGAGTTTGAGGgtaagtgctaaaagccatggcatgatgaatccagaagtgtcagtagtcag Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGG CAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaatcacagagtgcaaggttatccctctggcatatttccttctccagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCCGCACTCCACCTGGCTCACACCTgtgaaaatttcttgccatcttggacctctcaagagctcagggcagGAGGAGCAGCTGCCCCTGAGCTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCTGAGTTTGAGGgtaagtgctaaaagccatggcatgatgaatccagaagtgtcagtagtcag Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCA---GCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaatcacagagtgcaaggttatccctctggcatatttccttctccagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACACGAA---TCCGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAAGAGCTCAGGGCAGGAGGAGCAGCTGCCCCTGAGCTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCTGAGTTTGAGGgtaagtgctaaaagccatggcatgatgaatccagaagtgtcagtagtcag Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGG CAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaatcacagagtgcaaggttatccctctggcatatttccttctccagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCCGCACTCCACCTGGCTCACACCTgtgaaaatttcttgccatcttggacctctcaagagctcagggcagGAGGAGCAGCTGCCCCTGAGCTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCTGAGTTTGAGGgtaagtgctaaaagccatggcatgatgaatccagaagtgtcagtagtcag Alignment from Exonerate_coding2genome ttgtaatcacagagtgcaaggttatccctctggcatatttccttctccagaccccgctgcaccttgctttaattactgggcagaaaagagtggtgagctttctgctgcaggtgggtgtggaccccacactactggaaagacacgaatccgcactccacctggctcacacctgtgaaaatttcttgccatcttggacctctcaagagctcagggcaggaggagcagctgcccctgagctgttgcaggctttgttacgcagtgaagcccatgctgtaccacatatacatatgcctgagtttgagggtaagtgctaaaagccatggcatgatgaatccagaagtgtcagtagtcag Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCA---GGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaatcacagagtgcaaggttatccctctggcatatttccttctccagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCCGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAAGAGCTCAGGGCAGGAGGAGCAGCTGCCCCTGAGCTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCTGAGTTTGAGGgtaagtgctaaaagccatggcatgatgaatccagaagtgtcagtagtcag #### Nmrk1_ID4441_7 --> 2 - 1 Original Alignment ttTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATg ggccatattaactgtagactaggacaggcgtctccccgtccctcatctagtcTACCTGGATGGAACCAGGTCTGAAGATGACCTTTTTTCAGAAGTGTATGAAGATGTAGAGGAGGAGCTAGAGAAACAAAACggtacggcataaaaaagagttggaaaaaatccacaggacctgaaataggct Alignment from CESAR ttTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATg ggccatattaactgtagactaggacaggcgtctccccgtccctcatctagtcTACCTGGATGGAACCAGGTCTGAAGATGACCTTTTTTCAGAAGTGTATGAAGATGTAGAGGAGGAGCTAGAGAAACAAAACggtacggcataaaaaagagttggaaaaaatccacaggacctgaaataggct Alignment from Spaln_aa2Genome TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATGGTTTG--- ggccatattaactgtagactaggacaggcgtctccccgtccctcatctagTCTACCTGGATGGAACCAGGTCTGAAGATGACCTTTTTTCAGAAGTGTATGAAGATGTAGAGGAGGAGCTAGAGAAACAAAACGGTACGGCAtaaaaaagagttggaaaaaatccacaggacctgaaataggct Alignment from Spaln_nt2Genome TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATG ggccatattaactgtagactaggacaggcgtctccccgtccctcatctagTCTACCTGGATGGAACCAGGTCTGAAGATGACCTTTTTTCAGAAGTGTATGAAGATGTAGAGGAGGAGCTAGAGAAACAAAACGgtacggcataaaaaagagttggaaaaaatccacaggacctgaaataggct Alignment from Pairagon TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATGGTTTG ggccatattaactgtagactaggacaggcgtctccccgtccctcatctagTCTACCTGGATGGAACCAGGTCTGAAGATGACCTTTTTTCAGAAGTGTATGAAGATGTAGAGGAGGAGCTAGAGAAACAAAACGGTACGgcataaaaaagagttggaaaaaatccacaggacctgaaataggct Alignment from Exonerate_protein2genome TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATGGT ggccatattaactgtagactaggacaggcgtctccccgtccctcatctagTCTACCTGGATGGAACCAGGTCTGAAGATGACCTTTTTTCAGAAGTGTATGAAGATGTAGAGGAGGAGCTAGAGAAACAAAACGGTacggcataaaaaagagttggaaaaaatccacaggacctgaaataggct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATGGTTTG ggccatattaactgtagactaggacaggcgtctccccgtccctcatctagTCTACCTGGATGGAACCAGGTCTGAAGATGACCTTTTTTCAGAAGTGTATGAAGATGTAGAGGAGGAGCTAGAGAAACAAAACGGTACGgcataaaaaagagttggaaaaaatccacaggacctgaaataggct #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccaggtTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccaggtTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG gacttggttcaggatgtgcctagaaggcgcttcctgctctccctgtccagGTTGTGAGCTCTCTGATCACACACGTTCATTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTTGCGTTGAACATGgtaggtggtgcaagaaaatttggttcagcacacccttggtcttatctttc #### Nrxn2_ID1743_5 --> 2 - 0 Original Alignment gcAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaatgacctgcggcatgttaacttgtttgtttgtttgtttacaggtGAAGAGGAGTTTGTAGCAACGTTCAAGGATAATGAGTTTTTTTGCTATGACCTTTCACACAATCCAATCCAGAGCAGCTCTGATGAAATCACATTGGCCTTCCGTATGGTTCAGCACAATGGGCTCATGCTCCATGCAGGGAGATCAGCTGATTATGTTAACTTGTCCCTTAAGACCGGAGCAGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCTATTAATGGGAAGTTTAATGACAACACTTGGCATGACATTTGTGTAACACGGAATCTGCGCCAGgtagggaggctcagaagtcatcagcaatgggatgctagaagtattgttgg Alignment from CESAR gcAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaatgacctgcggcatgttaacttgtttgtttgtttgtttacaggtGAAGAGGAGTTTGTAGCAACGTTCAAGGATAATGAGTTTTTTTGCTATGACCTTTCACACAATCCAATCCAGAGCAGCTCTGATGAAATCACATTGGCCTTCCGTATGGTTCAGCACAATGGGCTCATGCTCCATGCAGGGAGATCAGCTGATTATGTTAACTTGTCCCTTAAGACCGGAGCAGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCTATTAATGGGAAGTTTAATGACAACACTTGGCATGACATTTGTGTAACACGGAATCTGCGCCAGgtagggaggctcagaagtcatcagcaatgggatgctagaagtattgttgg Alignment from Spaln_aa2Genome AGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaatgacctgcggcatgttaacttgtttgtttgtttgtttacaggtgaagAGGAGTTTGTAGCAACGTTCAAGGATAATGAGTTTTTTTGCTATGACCTTTCACACAATCCAATCCAGAGCAGCTCTGATGAAATCACATTGGCCTTCCGTATGGTTCAGCACAATGGGCTCATGCTCCATGCAGGGAGATCAGCTGATTATGTTAACTTGTCCCTTAAGACCGGAGCAGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCTATTAATGGGAAGTTTAATGACAACACTTGGCATGACATTTGTGTAACACGGAATCTGCGCCAGgtagggaggctcagaagtcatcagcaatgggatgctagaagtattgttgg Alignment from Spaln_nt2Genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaatgacctgcggcatgttaacttgtttgtttgtttgtttacagGTGAAGAGGAGTTTGTAGCAACGTTCAAGGATAATGAGTTTTTTTGCTATGACCTTTCACACAATCCAATCCAGAGCAGCTCTGATGAAATCACATTGGCCTTCCGTATGGTTCAGCACAATGGGCTCATGCTCCATGCAGGGAGATCAGCTGATTATGTTAACTTGTCCCTTAAGACCGGAGCAGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCTATTAATGGGAAGTTTAATGACAACACTTGGCATGACATTTGTGTAACACGGAATCTGCGCCAGgtagggaggctcagaagtcatcagcaatgggatgctagaagtattgttgg Alignment from Pairagon GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaatgacctgcggcatgttaacttgtttgtttgtttgtttacagGTGAAGAGGAGTTTGTAGCAACGTTCAAGGATAATGAGTTTTTTTGCTATGACCTTTCACACAATCCAATCCAGAGCAGCTCTGATGAAATCACATTGGCCTTCCGTATGGTTCAGCACAATGGGCTCATGCTCCATGCAGGGAGATCAGCTGATTATGTTAACTTGTCCCTTAAGACCGGAGCAGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCTATTAATGGGAAGTTTAATGACAACACTTGGCATGACATTTGTGTAACACGGAATCTGCGCCAGgtagggaggctcagaagtcatcagcaatgggatgctagaagtattgttgg Alignment from Exonerate_protein2genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAGCACGCAGGGATTGGACACGCTATG acctccaaatgacctgcggcatgttaacttgtttgtttgtttgtttacagGTGAAGAGGAGTTTGTAGCAACGTTCAAGGATAATGAGTTTTTTTGCTATGACCTTTCACACAATCCAATCCAGAGCAGCTCTGATGAAATCACATTGGCCTTCCGTATGGTTCAGCACAATGGGCTCATGCTCCATGCAGGGAGATCAGCTGATTATGTTAACTTGTCCCTTAAGACCGGAGCAGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCTATTAATGGGAAGTTTAATGACAACACTTGGCATGACATTTGTGTAACACGGAATCTGCGCCAGGTAGGGAGGCTCAGAAGTCATCAGcaatgggatgctagaagtattgttgg Alignment from Exonerate_coding2genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAGCACGCAGGGATTGGACACGCTATG acctccaaatgacctgcggcatgttaacttgtttgtttgtttgtttacagGTGAAGAGGAGTTTGTAGCAACGTTCAAGGATAATGAGTTTTTTTGCTATGACCTTTCACACAATCCAATCCAGAGCAGCTCTGATGAAATCACATTGGCCTTCCGTATGGTTCAGCACAATGGGCTCATGCTCCATGCAGGGAGATCAGCTGATTATGTTAACTTGTCCCTTAAGACCGGAGCAGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCTATTAATGGGAAGTTTAATGACAACACTTGGCATGACATTTGTGTAACACGGAATCTGCGCCAGGTAGGGAGGCTCAGAAGTCATCAGcaatgggatgctagaagtattgttgg Alignment from GeneWise AGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaatgacctgcggcatgttaacttgtttgtttgtttgtttacaggtgaagAGGAGTTTGTAGCAACGTTCAAGGATAATGAGTTTTTTTGCTATGACCTTTCACACAATCCAATCCAGAGCAGCTCTGATGAAATCACATTGGCCTTCCGTATGGTTCAGCACAATGGGCTCATGCTCCATGCAGGGAGATCAGCTGATTATGTTAACTTGTCCCTTAAGACCGGAGCAGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCTATTAATGGGAAGTTTAATGACAACACTTGGCATGACATTTGTGTAACACGGAATCTGCGCCAGgtagggaggctcagaagtcatcagcaatgggatgctagaagtattgttgg #### Nrxn2_ID1751_7 --> 0 - 0 Original Alignment GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttagcccttctctgcctctctgtagGTGACAATCTCCGTTGACGGCATTCTAACTACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATTTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTTATGGGGTGCCTAACGGATgtgagtgtgcattatggttgttcactagctagacttctttggtttaaggt Alignment from CESAR GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttagcccttctctgcctctctgtagGTGACAATCTCCGTTGACGGCATTCTAACTACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATTTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTTATGGGGTGCCTAACGGATgtgagtgtgcattatggttgttcactagctagacttctttggtttaaggt Alignment from Spaln_aa2Genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttagcccttctctgcctctctgtagGTGACAATCTCCGTTGACGGCATTCTAACTACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATTTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTTATGGGGTGCCTAACGGATgtgagtgtgcattatggttgttcactagctagacttctttggtttaaggt Alignment from Spaln_nt2Genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttagcccttctctgcctctctgtagGTGACAATCTCCGTTGACGGCATTCTAACTACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATTTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTTATGGGGTGCCTAACGGATgtgagtgtgcattatggttgttcactagctagacttctttggtttaaggt Alignment from Pairagon GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttagcccttctctgcctctctgtagGTGACAATCTCCGTTGACGGCATTCTAACTACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATTTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTTATGGGGTGCCTAACGGATgtgagtgtgcattatggttgttcactagctagacttctttggtttaaggt Alignment from Exonerate_protein2genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttagcccttctctgcctctctgtagGTGACAATCTCCGTTGACGGCATTCTAACTACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATTTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTTATGGGGTGCCTAACGGATgtgagtgtgcattatggttgttcactagctagacttctttggtttaaggt Alignment from Exonerate_coding2genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttagcccttctctgcctctctgtagGTGACAATCTCCGTTGACGGCATTCTAACTACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATTTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTTATGGGGTGCCTAACGGATgtgagtgtgcattatggttgttcactagctagacttctttggtttaaggt Alignment from GeneWise GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttagcccttctctgcctctctgtagGTGACAATCTCCGTTGACGGCATTCTAACTACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATTTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTTATGGGGTGCCTAACGGATgtgagtgtgcattatggttgttcactagctagacttctttggtttaaggt #### Nrxn2_ID1753_9 --> 2 - 1 Original Alignment gcTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGA---CGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGC------GTTGCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAg ttattatttaaattctccctgtgcccaattcttgcttttgtttcctgcaggaTCCATATCTGTGAATAGCCGAAGTGCACCATTCTTGGCTACAGCAGAAAGTGAGTTTCAGGACCTGGAGGGT---GTGTACTTGGTTTGTGGCCTTCCTGAAGGCAGACGAATAGACTTACCCCTGCCACCTGAGGTATGGACTGCAGCCCTGCGGGCTGGTTATGTAGGCTGTGTGAGAGCCCTCTACATTGATGGGCGGCGTAGTCAGGATCTCCGAGGCCTGGCTGAGGCACAAGAAGTTGCTGGCGTGACACTGGCACCCTTTGCTTCTTGGGAAACCCTGAGACAGTATGCACTGGCCCCATGTCAGAATGGGGGGATATGTCGTGAAGGTTGGACCCGATTTGATTGTGATTGTATTGGTACTGGTATACTAGGTAGAGTCTGTGAGAGAggtaaggtttggatatgcccaaggactgtagaaacaaatgggactccttgt Alignment from CESAR gcTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGG---AGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAg ttattatttaaattctccctgtgcccaattcttgcttttgtttcctgcaggaTCCATATCTGTGAATAGCCGAAGTGCACCATTCTTGGCTACAGCAGAAAGTGAGTTTCAGGACCTGGAGGGT---GTGTACTTGGTTTGTGGCCTTCCTGAAGGCAGACGAATAGACTTACCCCTGCCACCTGAGGTATGGACTGCAGCCCTGCGGGCTGGTTATGTAGGCTGTGTGAGAGCCCTCTACATTGATGGGCGGCGTAGTCAGGATCTCCGAGGCCTGGCTGAGGCACAAGAAGTTGCTGGCGTGACACTGGCACCCTTTGCTTCTTGGGAAACCCTGAGACAGTATGCACTGGCCCCATGTCAGAATGGGGGGATATGTCGTGAAGGTTGGACCCGATTTGATTGTGATTGTATTGGTACTGGTATACTAGGTAGAGTCTGTGAGAGAggtaaggtttggatatgcccaaggactgtagaaacaaatgggactccttgt Alignment from Spaln_aa2Genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGGGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGA---CGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttattatttaaattctccctgtgcccaattcttgcttttgtttcctgcagGATCCATATCTGTGAATAGCCGAAGTGCACCATTCTTGGCTACAGCAGAAAGTGAGTTTCAGGACCTGGAGGGTGTGTACTTGGTTTGTGGCCTTCCTGAAGGCAGACGAATAGACTTACCCCTGCCACCTGAGGTATGGACTGCAGCCCTGCGGGCTGGTTATGTAGGCTGTGTGAGAGCCCTCTACATTGATGGGCGGCGTAGTCAGGATCTCCGAGGCCTGGCTGAGGCACAAGAAGTTGCTGGCGTGACACTGGCACCCTTTGCTTCTTGGGAAACCCTGAGACAGTATGCACTGGCCCCATGTCAGAATGGGGGGATATGTCGTGAAGGTTGGACCCGATTTGATTGTGATTGTATTGGTACTGGTATACTAGGTAGAGTCTGTGAGAGAGgtaaggtttggatatgcccaaggactgtagaaacaaatgggactccttgt Alignment from Spaln_nt2Genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGG---GCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGG---AGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttattatttaaattctccctgtgcccaattcttgcttttgtttcctgcagGATCCATATCTGTGAATAGCCGAAGTGCACCATTCTTGGCTACAGCAGAAAGTGAGTTTCAGGACCTGGAGGGTG---TGTACTTGGTTTGTGGCCTTCCTGAAGGCAGACGAATAGACTTACCCCTGCCACCTGAGGTATGGACTGCAGCCCTGCGGGCTGGTTATGTAGGCTGTGTGAGAGCCCTCTACATTGATGGGCGGCGTAGTCAGGATCTCCGAGGCCTGGCTGAGGCACAAGAAGTTGCTGGCGTGACACTGGCACCCTTTGCTTCTTGGGAAACCCTGAGACAGTATGCACTGGCCCCATGTCAGAATGGGGGGATATGTCGTGAAGGTTGGACCCGATTTGATTGTGATTGTATTGGTACTGGTATACTAGGTAGAGTCTGTGAGAGAGgtaaggtttggatatgcccaaggactgtagaaacaaatgggactccttgt Alignment from Pairagon GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGG---GCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGG---AGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCG---------------TTGCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttattatttaaattctccctgtgcccaattcttgcttttgtttcctgcagGATCCATATCTGTGAATAGCCGAAGTGCACCATTCTTGGCTACAGCAGAAAGTGAGTTTCAGGACCTGGAGGGTG---TGTACTTGGTTTGTGGCCTTCCTGAAGGCAGACGAATAGACTTACCCCTGCCACCTGAGGTATGGACTGCAGCCCTGCGGGCTGGTTATGTAGGCTGTGTGAGAGCCCTCTACATTGATGGGCGGCGTAGTCAGGATCTCCGAGGCCTGGCTGAGGCACAAGAAGTTGCTGGCGTGACACTGGCACCCTTTGCTTCTT---------GGGAAACCCTGAGACAGTATGCACTGGCCCCATGTCAGAATGGGGGGATATGTCGTGAAGGTTGGACCCGATTTGATTGTGATTGTATTGGTACTGGTATACTAGGTAGAGTCTGTGAGAGAGgtaaggtttggatatgcccaaggactgtagaaacaaatgggactccttgt Alignment from Exonerate_protein2genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGGGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGA---CGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttattatttaaattctccctgtgcccaattcttgcttttgtttcctgcagGATCCATATCTGTGAATAGCCGAAGTGCACCATTCTTGGCTACAGCAGAAAGTGAGTTTCAGGACCTGGAGGGTGTGTACTTGGTTTGTGGCCTTCCTGAAGGCAGACGAATAGACTTACCCCTGCCACCTGAGGTATGGACTGCAGCCCTGCGGGCTGGTTATGTAGGCTGTGTGAGAGCCCTCTACATTGATGGGCGGCGTAGTCAGGATCTCCGAGGCCTGGCTGAGGCACAAGAAGTTGCTGGCGTGACACTGGCACCCTTTGCTTCTTGGGAAACCCTGAGACAGTATGCACTGGCCCCATGTCAGAATGGGGGGATATGTCGTGAAGGTTGGACCCGATTTGATTGTGATTGTATTGGTACTGGTATACTAGGTAGAGTCTGTGAGAGAGgtaaggtttggatatgcccaaggactgtagaaacaaatgggactccttgt Alignment from Exonerate_coding2genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGGGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGA---CGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttattatttaaattctccctgtgcccaattcttgcttttgtttcctgcagGATCCATATCTGTGAATAGCCGAAGTGCACCATTCTTGGCTACAGCAGAAAGTGAGTTTCAGGACCTGGAGGGTGTGTACTTGGTTTGTGGCCTTCCTGAAGGCAGACGAATAGACTTACCCCTGCCACCTGAGGTATGGACTGCAGCCCTGCGGGCTGGTTATGTAGGCTGTGTGAGAGCCCTCTACATTGATGGGCGGCGTAGTCAGGATCTCCGAGGCCTGGCTGAGGCACAAGAAGTTGCTGGCGTGACACTGGCACCCTTTGCTTCTTGGGAAACCCTGAGACAGTATGCACTGGCCCCATGTCAGAATGGGGGGATATGTCGTGAAGGTTGGACCCGATTTGATTGTGATTGTATTGGTACTGGTATACTAGGTAGAGTCTGTGAGAGAGgtaaggtttggatatgcccaaggactgtagaaacaaatgggactccttgt Alignment from GeneWise GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGGGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGA---CGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttattatttaaattctccctgtgcccaattcttgcttttgtttcctgcagGATCCATATCTGTGAATAGCCGAAGTGCACCATTCTTGGCTACAGCAGAAAGTGAGTTTCAGGACCTGGAGGGTGTGTACTTGGTTTGTGGCCTTCCTGAAGGCAGACGAATAGACTTACCCCTGCCACCTGAGGTATGGACTGCAGCCCTGCGGGCTGGTTATGTAGGCTGTGTGAGAGCCCTCTACATTGATGGGCGGCGTAGTCAGGATCTCCGAGGCCTGGCTGAGGCACAAGAAGTTGCTGGCGTGACACTGGCACCCTTTGCTTCTTGGGAAACCCTGAGACAGTATGCACTGGCCCCATGTCAGAATGGGGGGATATGTCGTGAAGGTTGGACCCGATTTGATTGTGATTGTATTGGTACTGGTATACTAGGTAGAGTCTGTGAGAGAGgtaaggtttggatatgcccaaggactgtagaaacaaatgggactccttgt #### Nrxn2_ID1760_11 --> 2 - 1 Original Alignment acTGCCTGCGCGTCGGCTGCGCACCCa tgtatggctctatgtttcacaaattcttctacccacctctgtgcccacagatTGCCTGCGTGTGGGCTGCGCACCCagtaagggtcttgcctcttttgccaacttaggatgcatccaaaaaaatagg Alignment from CESAR acTGCCTGCGCGTCGGCTGCGCACCCa tgtatggctctatgtttcacaaattcttctacccacctctgtgcccacagatTGCCTGCGTGTGGGCTGCGCACCCagtaagggtcttgcctcttttgccaacttaggatgcatccaaaaaaatagg Alignment from Spaln_aa2Genome ACTGCCTGCGCGTCGGCTGCGCACCCA tgtatggctctatgtttcacaaattcttctacccacctctgtgcccacagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttttgccaacttaggatgcatccaaaaaaatagg Alignment from Spaln_nt2Genome ACTGCCTGCGCGTCGGCTGCGCACCCA tgtatggctctatgtttcacaaattcttctacccacctctgtgcccacagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttttgccaacttaggatgcatccaaaaaaatagg Alignment from Pairagon ACTGCCTGCGCGTCGGCTGCGCACCCA tgtatggctctatgtttcacaaattcttctacccacctctgtgcccacagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttttgccaacttaggatgcatccaaaaaaatagg Alignment from Exonerate_protein2genome ACTGCCTGCGCGTCGGCTGCGCACCCA tgtatggctctatgtttcacaaattcttctacccacctctgtgcccacagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttttgccaacttaggatgcatccaaaaaaatagg Alignment from Exonerate_coding2genome ACTGCCTGCGCGTCGGCTGCGCACCCA tgtatggctctatgtttcacaaattcttctacccacctctgtgcccacagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttttgccaacttaggatgcatccaaaaaaatagg Alignment from GeneWise ACTGCCTGCGCGTCGGCTGCGCACCCA tgtatggctctatgtttcacaaattcttctacccacctctgtgcccacagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttttgccaacttaggatgcatccaaaaaaatagg #### Nrxn2_ID1762_13 --> 2 - 2 Original Alignment gaCAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGgg taatgatgggctgaatgttcccaattaactccctggactctgttacccaggaCAAATGGCTGGAGCACACACTCAGTTAGAGTTCTACAACATTGAGACTGGCATTATGACAGAGCGGCGGTCTATCTCTGTGGTACCCTCTAACTTTATGGGGTACCTGAGTGGACTGGTGTTCAATGGTCAACCCTACATGGATCAGTGCAAAGATGGAGATATAACCTATTGTGAGCTTAATGCTCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCTGTCACATTTAAGAGTTGCAGCAGCTTCCTGGCACTAGCCACACTGCAAGCTTATGCTTCCATGCACCTCTTCTTCCAGTTCAAAACAACAGCCTCAGATGGACTTCTGTTGTTTAACTCAGGCAATGGTAATGATTTCATTGTCATTGAGTTGGTCAAGgggtaattgaatgggatgaatgcactcacctcactgcatgaggtgggatgcc Alignment from CESAR gaCAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGgg taatgatgggctgaatgttcccaattaactccctggactctgttacccaggaCAAATGGCTGGAGCACACACTCAGTTAGAGTTCTACAACATTGAGACTGGCATTATGACAGAGCGGCGGTCTATCTCTGTGGTACCCTCTAACTTTATGGGGTACCTGAGTGGACTGGTGTTCAATGGTCAACCCTACATGGATCAGTGCAAAGATGGAGATATAACCTATTGTGAGCTTAATGCTCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCTGTCACATTTAAGAGTTGCAGCAGCTTCCTGGCACTAGCCACACTGCAAGCTTATGCTTCCATGCACCTCTTCTTCCAGTTCAAAACAACAGCCTCAGATGGACTTCTGTTGTTTAACTCAGGCAATGGTAATGATTTCATTGTCATTGAGTTGGTCAAGgggtaattgaatgggatgaatgcactcacctcactgcatgaggtgggatgcc Alignment from Spaln_aa2Genome GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG taatgatgggctgaatgttcccaattaactccctggactctgttacccagGACAAATGGCTGGAGCACACACTCAGTTAGAGTTCTACAACATTGAGACTGGCATTATGACAGAGCGGCGGTCTATCTCTGTGGTACCCTCTAACTTTATGGGGTACCTGAGTGGACTGGTGTTCAATGGTCAACCCTACATGGATCAGTGCAAAGATGGAGATATAACCTATTGTGAGCTTAATGCTCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCTGTCACATTTAAGAGTTGCAGCAGCTTCCTGGCACTAGCCACACTGCAAGCTTATGCTTCCATGCACCTCTTCTTCCAGTTCAAAACAACAGCCTCAGATGGACTTCTGTTGTTTAACTCAGGCAATGGTAATGATTTCATTGTCATTGAGTTGGTCAAGGGgtaattgaatgggatgaatgcactcacctcactgcatgaggtgggatgcc Alignment from Spaln_nt2Genome GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG taatgatgggctgaatgttcccaattaactccctggactctgttacccagGACAAATGGCTGGAGCACACACTCAGTTAGAGTTCTACAACATTGAGACTGGCATTATGACAGAGCGGCGGTCTATCTCTGTGGTACCCTCTAACTTTATGGGGTACCTGAGTGGACTGGTGTTCAATGGTCAACCCTACATGGATCAGTGCAAAGATGGAGATATAACCTATTGTGAGCTTAATGCTCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCTGTCACATTTAAGAGTTGCAGCAGCTTCCTGGCACTAGCCACACTGCAAGCTTATGCTTCCATGCACCTCTTCTTCCAGTTCAAAACAACAGCCTCAGATGGACTTCTGTTGTTTAACTCAGGCAATGGTAATGATTTCATTGTCATTGAGTTGGTCAAGGGgtaattgaatgggatgaatgcactcacctcactgcatgaggtgggatgcc Alignment from Pairagon GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG taatgatgggctgaatgttcccaattaactccctggactctgttacccagGACAAATGGCTGGAGCACACACTCAGTTAGAGTTCTACAACATTGAGACTGGCATTATGACAGAGCGGCGGTCTATCTCTGTGGTACCCTCTAACTTTATGGGGTACCTGAGTGGACTGGTGTTCAATGGTCAACCCTACATGGATCAGTGCAAAGATGGAGATATAACCTATTGTGAGCTTAATGCTCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCTGTCACATTTAAGAGTTGCAGCAGCTTCCTGGCACTAGCCACACTGCAAGCTTATGCTTCCATGCACCTCTTCTTCCAGTTCAAAACAACAGCCTCAGATGGACTTCTGTTGTTTAACTCAGGCAATGGTAATGATTTCATTGTCATTGAGTTGGTCAAGGGgtaattgaatgggatgaatgcactcacctcactgcatgaggtgggatgcc Alignment from Exonerate_protein2genome GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG taatgatgggctgaatgttcccaattaactccctggactctgttacccagGACAAATGGCTGGAGCACACACTCAGTTAGAGTTCTACAACATTGAGACTGGCATTATGACAGAGCGGCGGTCTATCTCTGTGGTACCCTCTAACTTTATGGGGTACCTGAGTGGACTGGTGTTCAATGGTCAACCCTACATGGATCAGTGCAAAGATGGAGATATAACCTATTGTGAGCTTAATGCTCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCTGTCACATTTAAGAGTTGCAGCAGCTTCCTGGCACTAGCCACACTGCAAGCTTATGCTTCCATGCACCTCTTCTTCCAGTTCAAAACAACAGCCTCAGATGGACTTCTGTTGTTTAACTCAGGCAATGGTAATGATTTCATTGTCATTGAGTTGGTCAAGGGgtaattgaatgggatgaatgcactcacctcactgcatgaggtgggatgcc Alignment from Exonerate_coding2genome GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG taatgatgggctgaatgttcccaattaactccctggactctgttacccagGACAAATGGCTGGAGCACACACTCAGTTAGAGTTCTACAACATTGAGACTGGCATTATGACAGAGCGGCGGTCTATCTCTGTGGTACCCTCTAACTTTATGGGGTACCTGAGTGGACTGGTGTTCAATGGTCAACCCTACATGGATCAGTGCAAAGATGGAGATATAACCTATTGTGAGCTTAATGCTCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCTGTCACATTTAAGAGTTGCAGCAGCTTCCTGGCACTAGCCACACTGCAAGCTTATGCTTCCATGCACCTCTTCTTCCAGTTCAAAACAACAGCCTCAGATGGACTTCTGTTGTTTAACTCAGGCAATGGTAATGATTTCATTGTCATTGAGTTGGTCAAGGGgtaattgaatgggatgaatgcactcacctcactgcatgaggtgggatgcc Alignment from GeneWise GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG taatgatgggctgaatgttcccaattaactccctggactctgttacccagGACAAATGGCTGGAGCACACACTCAGTTAGAGTTCTACAACATTGAGACTGGCATTATGACAGAGCGGCGGTCTATCTCTGTGGTACCCTCTAACTTTATGGGGTACCTGAGTGGACTGGTGTTCAATGGTCAACCCTACATGGATCAGTGCAAAGATGGAGATATAACCTATTGTGAGCTTAATGCTCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCTGTCACATTTAAGAGTTGCAGCAGCTTCCTGGCACTAGCCACACTGCAAGCTTATGCTTCCATGCACCTCTTCTTCCAGTTCAAAACAACAGCCTCAGATGGACTTCTGTTGTTTAACTCAGGCAATGGTAATGATTTCATTGTCATTGAGTTGGTCAAGGGgtaattgaatgggatgaatgcactcacctcactgcatgaggtgggatgcc #### Nrxn2_ID1766_16 --> 2 - 1 Original Alignment gcCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACc aattgcataacatggaaaggttaatggaccacccccaccctgggcagcaggcCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGCGTCTGTTTGCAGCAGTGGGATGGTTTCACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGTAACGACcgtgagttggctgttgggatacctccccaatctccccataggccaggggac Alignment from CESAR gcCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACc aattgcataacatggaaaggttaatggaccacccccaccctgggcagcaggcCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGCGTCTGTTTGCAGCAGTGGGATGGTTTCACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGTAACGACcgtgagttggctgttgggatacctccccaatctccccataggccaggggac Alignment from Spaln_aa2Genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcataacatggaaaggttaatggaccacccccaccctgggcagcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGCGTCTGTTTGCAGCAGTGGGATGGTTTCACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGTAACGACCgtgagttggctgttgggatacctccccaatctccccataggccaggggac Alignment from Spaln_nt2Genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcataacatggaaaggttaatggaccacccccaccctgggcagcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGCGTCTGTTTGCAGCAGTGGGATGGTTTCACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGTAACGACCgtgagttggctgttgggatacctccccaatctccccataggccaggggac Alignment from Pairagon GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcataacatggaaaggttaatggaccacccccaccctgggcagcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGCGTCTGTTTGCAGCAGTGGGATGGTTTCACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGTAACGACCgtgagttggctgttgggatacctccccaatctccccataggccaggggac Alignment from Exonerate_protein2genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcataacatggaaaggttaatggaccacccccaccctgggcagcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGCGTCTGTTTGCAGCAGTGGGATGGTTTCACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGTAACGACCgtgagttggctgttgggatacctccccaatctccccataggccaggggac Alignment from Exonerate_coding2genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGAC aattgcataacatggaaaggttaatggaccacccccaccctgggcagcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGCGTCTGTTTGCAGCAGTGGGATGGTTTCACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGTAACGACcgtgagttggctgttgggatacctccccaatctccccataggccaggggac Alignment from GeneWise --GGCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcataacatggaaaggttaatggaccacccccaccctgggcagCAGGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGCGTCTGTTTGCAGCAGTGGGATGGTTTCACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGTAACGACCgtgagttggctgttgggatacctccccaatctccccataggccaggggac #### Nrxn2_ID1781_20 --> 2 - 0 Original Alignment gaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG cctttgtggccctctattgtttctgaaaaactctccccttttcttcacagggCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCTGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgagcacactatacgtatcttgacagttacatcattagcaggctgagca Alignment from CESAR gaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG cctttgtggccctctattgtttctgaaaaactctccccttttcttcacagggCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCTGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgagcacactatacgtatcttgacagttacatcattagcaggctgagca Alignment from Spaln_aa2Genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG cctttgtggccctctattgtttctgaaaaactctccccttttcttcacagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCTGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgagcacactatacgtatcttgacagttacatcattagcaggctgagca Alignment from Spaln_nt2Genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG cctttgtggccctctattgtttctgaaaaactctccccttttcttcacagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCTGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgagcacactatacgtatcttgacagttacatcattagcaggctgagca Alignment from Pairagon GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG cctttgtggccctctattgtttctgaaaaactctccccttttcttcacagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCTGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgagcacactatacgtatcttgacagttacatcattagcaggctgagca Alignment from Exonerate_protein2genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG cctttgtggccctctattgtttctgaaaaactctccccttttcttcacagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCTGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgagcacactatacgtatcttgacagttacatcattagcaggctgagca Alignment from Exonerate_coding2genome cctttgtggccctctattgtttctgaaaaactctccccttttcttcacagggcgccagttaaccatcttcaacagccaggctgccatcaagatagggggccgggatcagggacgtcccttccagggccaggtgtctggcctatactacaatgggctcaaggtactggccctggctgcagagagtgaccccaatgtgcggactgaaggccacttacggctagtcggggaggggctgtctgtgctgctcagtgctgagaccactggcaccactctgctggctgacatggccaccaccatcacggagaccaccaccaccatggccactaccagtactcgccggggccgttcccccacaatgagggacagcaccacccaggtgagcacactatacgtatcttgacagttacatcattagcaggctgagca Alignment from GeneWise GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG cctttgtggccctctattgtttctgaaaaactctccccttttcttcacagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCTGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgagcacactatacgtatcttgacagttacatcattagcaggctgagca #### Nt5c2_ID10037_16 --> 1 - 0 Original Alignment gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcaggCATTTAGACAGCAGCAGC------------AATATAAGTCCTATCCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from CESAR gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcaggCATTTAGACAGCAGCAGCAAT------------ATAAGTCCTATCCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from Spaln_aa2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcagGCATTTAGACAGCAGCAGCAAT------------ATAAGTCCTATCCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from Spaln_nt2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcagGCATTTAGACAGCAGCAGCAAT------------ATAAGTCCTATCCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from Pairagon GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcagGCATTTAGACAGCAGCAGCAAT------------ATAAGTCCTATCCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from Exonerate_protein2genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcagGCATTTAGACAGCAGCAGCAAT------------ATAAGTCCTATCCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from Exonerate_coding2genome gaggttactcaatgtgtataatataaggtttaccctttcttttttttcaggcatttagacagcagcagcaatataagtcctatccaacggcagatcaaagtaattagttcacatctgagagacaaaactagatactaggattgccaaag Alignment from GeneWise GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG gaggttactcaatgtgtataatataaggtttaccctttcttttttttcagGCATTTAGACAGCAGCAGCAAT------------ATAAGTCCTATCCAACGGCAGATCAAAgtaattagttcacatctgagagacaaaactagatactaggattgccaaag #### Nt5c2_ID10043_10 --> 0 - 0 Original Alignment GGCAAGTTGCCGTTGCTTCTGAGCCGAATGAAGGAAGTAGGGAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGAT tcacaatctttcttctatacacttggcagctctgtctcattgcctcctagGGCAAGTTGCCGTTACTTCTGAGCAGAATGAAGGAAGTAGGTAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGATgtatttttagtgatggatttcacagacaaggacatgacacactatgcaga Alignment from CESAR GGCAAGTTGCCGTTGCTTCTGAGCCGAATGAAGGAAGTAGGGAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGAT tcacaatctttcttctatacacttggcagctctgtctcattgcctcctagGGCAAGTTGCCGTTACTTCTGAGCAGAATGAAGGAAGTAGGTAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGATgtatttttagtgatggatttcacagacaaggacatgacacactatgcaga Alignment from Spaln_aa2Genome GGCAAGTTGCCGTTGCTTCTGAGCCGAATGAAGGAAGTAGGGAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGAT tcacaatctttcttctatacacttggcagctctgtctcattgcctcctagGGCAAGTTGCCGTTACTTCTGAGCAGAATGAAGGAAGTAGGTAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGATgtatttttagtgatggatttcacagacaaggacatgacacactatgcaga Alignment from Spaln_nt2Genome GGCAAGTTGCCGTTGCTTCTGAGCCGAATGAAGGAAGTAGGGAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGAT tcacaatctttcttctatacacttggcagctctgtctcattgcctcctagGGCAAGTTGCCGTTACTTCTGAGCAGAATGAAGGAAGTAGGTAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGATgtatttttagtgatggatttcacagacaaggacatgacacactatgcaga Alignment from Pairagon GGCAAGTTGCCGTTGCTTCTGAGCCGAATGAAGGAAGTAGGGAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGAT tcacaatctttcttctatacacttggcagctctgtctcattgcctcctagGGCAAGTTGCCGTTACTTCTGAGCAGAATGAAGGAAGTAGGTAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGATgtatttttagtgatggatttcacagacaaggacatgacacactatgcaga Alignment from Exonerate_protein2genome GGCAAGTTGCCGTTGCTTCTGAGCCGAATGAAGGAAGTAGGGAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGAT tcacaatctttcttctatacacttggcagctctgtctcattgcctcctagGGCAAGTTGCCGTTACTTCTGAGCAGAATGAAGGAAGTAGGTAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGATgtatttttagtgatggatttcacagacaaggacatgacacactatgcaga Alignment from Exonerate_coding2genome GGCAAGTTGCCGTTGCTTCTGAGCCGAATGAAGGAAGTAGGGAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGATAAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAA tcacaatctttcttctatacacttggcagctctgtctcattgcctcctagGGCAAGTTGCCGTTACTTCTGAGCAGAATGAAGGAAGTAGGTAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGATGTATTTTTAGTGATGGATTTCACAGACAAGGACATGACACActatgcaga Alignment from GeneWise GGCAAGTTGCCGTTGCTTCTGAGCCGAATGAAGGAAGTAGGGAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGAT tcacaatctttcttctatacacttggcagctctgtctcattgcctcctagGGCAAGTTGCCGTTACTTCTGAGCAGAATGAAGGAAGTAGGTAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGATgtatttttagtgatggatttcacagacaaggacatgacacactatgcaga #### Nt5c2_ID10049_4 --> 2 - 2 Original Alignment tgTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCag gatcctccccacccatcatgcatccatgctgtggtttttttcccttgcagtgTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTATCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCaggtacgtttgcatactgtctctaactgcagaagtcaccatcatcccaagac Alignment from CESAR tgTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCag gatcctccccacccatcatgcatccatgctgtggtttttttcccttgcagtgTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTATCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCaggtacgtttgcatactgtctctaactgcagaagtcaccatcatcccaagac Alignment from Spaln_aa2Genome TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG gatcctccccacccatcatgcatccatgctgtggtttttttcccttgcagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTATCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtacgtttgcatactgtctctaactgcagaagtcaccatcatcccaagac Alignment from Spaln_nt2Genome TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG gatcctccccacccatcatgcatccatgctgtggtttttttcccttgcagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTATCCA---GCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtacgtttgcatactgtctctaactgcagaagtcaccatcatcccaagac Alignment from Pairagon TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG gatcctccccacccatcatgcatccatgctgtggtttttttcccttgcagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTATCCA---GCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtacgtttgcatactgtctctaactgcagaagtcaccatcatcccaagac Alignment from Exonerate_protein2genome TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG gatcctccccacccatcatgcatccatgctgtggtttttttcccttgcagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTATCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtacgtttgcatactgtctctaactgcagaagtcaccatcatcccaagac Alignment from Exonerate_coding2genome TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG gatcctccccacccatcatgcatccatgctgtggtttttttcccttgcagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTATCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtacgtttgcatactgtctctaactgcagaagtcaccatcatcccaagac Alignment from GeneWise TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG gatcctccccacccatcatgcatccatgctgtggtttttttcccttgcagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTATCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtacgtttgcatactgtctctaactgcagaagtcaccatcatcccaagac #### Nt5c2_ID10055_3 --> 1 - 1 Original Alignment gGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCg ttgtatcatcgtgccgtggtgtctttgtatgtctgatttctcttttctaggGTCTTTGTGAACCATGGTCTCGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATATACTAGCCtgtaaggaaacttttcattctaggcacctgcactggttttgcgttgctgga Alignment from CESAR gGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCg ttgtatcatcgtgccgtggtgtctttgtatgtctgatttctcttttctaggGTCTTTGTGAACCATGGTCTCGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATATACTAGCCtgtaaggaaacttttcattctaggcacctgcactggttttgcgttgctgga Alignment from Spaln_aa2Genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG ttgtatcatcgtgccgtggtgtctttgtatgtctgatttctcttttctagGGTCTTTGTGAACCATGGTCTCGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATATACTAGCCTgtaaggaaacttttcattctaggcacctgcactggttttgcgttgctgga Alignment from Spaln_nt2Genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG ttgtatcatcgtgccgtggtgtctttgtatgtctgatttctcttttctagGGTCTTTGTGAACCATGGTCTCGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATATACTAGCCTgtaaggaaacttttcattctaggcacctgcactggttttgcgttgctgga Alignment from Pairagon GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG ttgtatcatcgtgccgtggtgtctttgtatgtctgatttctcttttctagGGTCTTTGTGAACCATGGTCTCGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATATACTAGCCTgtaaggaaacttttcattctaggcacctgcactggttttgcgttgctgga Alignment from Exonerate_protein2genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG ttgtatcatcgtgccgtggtgtctttgtatgtctgatttctcttttctagGGTCTTTGTGAACCATGGTCTCGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATATACTAGCCTgtaaggaaacttttcattctaggcacctgcactggttttgcgttgctgga Alignment from Exonerate_coding2genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG ttgtatcatcgtgccgtggtgtctttgtatgtctgatttctcttttctagGGTCTTTGTGAACCATGGTCTCGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATATACTAGCCTgtaaggaaacttttcattctaggcacctgcactggttttgcgttgctgga Alignment from GeneWise GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG ttgtatcatcgtgccgtggtgtctttgtatgtctgatttctcttttctagGGTCTTTGTGAACCATGGTCTCGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATATACTAGCCTgtaaggaaacttttcattctaggcacctgcactggttttgcgttgctgga #### Nudt22_ID1972_3 --> 0 - 2 Original Alignment GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCca ctaatgataggatttattccattgacttttcacttccctttgcttcccagGTAAACCTGCCACTCCACATCCTGAGCCAGCCACTGTTGTTGAGGATTGCTTGCAACCAGACAAGTGCAGGC---ACTAGTGCAGAGTTCTATGTCcagtaagtgaaggcatggtgtgggcaaggtactcaacaagggaggatctaga Alignment from CESAR GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCca ctaatgataggatttattccattgacttttcacttccctttgcttcccagGTAAACCTGCCACTCCACATCCTGAGCCAGCCACTGTTGTTGAGGATTGCTTGCAACCAGACAAGTGCAGGC---ACTAGTGCAGAGTTCTATGTCcagtaagtgaaggcatggtgtgggcaaggtactcaacaagggaggatctaga Alignment from Spaln_aa2Genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA ctaatgataggatttattccattgacttttcacttccctttgcttcccagGTAAACCTGCCACTCCACATCCTGAGCCAGCCACTGTTGTTGAGGATTGCTTGCAACCAGACAAGTGCAGGC---ACTAGTGCAGAGTTCTATGTCCAgtaagtgaaggcatggtgtgggcaaggtactcaacaagggaggatctaga Alignment from Spaln_nt2Genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA ctaatgataggatttattccattgacttttcacttccctttgcttcccagGTAAACCTGCCACTCCACATCCTGAGCCAGCCACTGTTGTTGAGGATTGCTTGCAACCAGACAAGTGCAGGCA---CTAGTGCAGAGTTCTATGTCCAgtaagtgaaggcatggtgtgggcaaggtactcaacaagggaggatctaga Alignment from Pairagon GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA ctaatgataggatttattccattgacttttcacttccctttgcttcccagGTAAACCTGCCACTCCACATCCTGAGCCAGCCACTGTTGTTGAGGATTGCTTGCAACCAGACAAGTGCAGGCA---CTAGTGCAGAGTTCTATGTCCAgtaagtgaaggcatggtgtgggcaaggtactcaacaagggaggatctaga Alignment from Exonerate_protein2genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA ctaatgataggatttattccattgacttttcacttccctttgcttcccagGTAAACCTGCCACTCCACATCCTGAGCCAGCCACTGTTGTTGAGGATTGCTTGCAACCAGACAAGTGCAGGC---ACTAGTGCAGAGTTCTATGTCCAgtaagtgaaggcatggtgtgggcaaggtactcaacaagggaggatctaga Alignment from Exonerate_coding2genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA ctaatgataggatttattccattgacttttcacttccctttgcttcccagGTAAACCTGCCACTCCACATCCTGAGCCAGCCACTGTTGTTGAGGATTGCTTGCAACCAGACAAGTGCAGGC---ACTAGTGCAGAGTTCTATGTCCAgtaagtgaaggcatggtgtgggcaaggtactcaacaagggaggatctaga Alignment from GeneWise GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA ctaatgataggatttattccattgacttttcacttccctttgcttcccagGTAAACCTGCCACTCCACATCCTGAGCCAGCCACTGTTGTTGAGGATTGCTTGCAACCAGACAAGTGCAGGC---ACTAGTGCAGAGTTCTATGTCCAgtaagtgaaggcatggtgtgggcaaggtactcaacaagggaggatctaga #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtctaggccacgtaaacattatttcttgctgtttctcttacagtTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGGAGCAAGTCTGGGGAGTGTTGCAACCTGTGCATGATCAGgtgagtaagcttttcaggtgaggaagcttttcaatagaaaaagtctacca Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtctaggccacgtaaacattatttcttgctgtttctcttacagtTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGGAGCAAGTCTGGGGAGTGTTGCAACCTGTGCATGATCAGgtgagtaagcttttcaggtgaggaagcttttcaatagaaaaagtctacca Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtctaggccacgtaaacattatttcttgctgtttctcttacagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTGGTACCCAAGGAGCAAGTCTGGGGAGTGTTGCAACCTGTGCATGATCAGgtgagtaagcttttcaggtgaggaagcttttcaatagaaaaagtctacca Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGT---AATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtctaggccacgtaaacattatttcttgctgtttctcttacagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTT---GGTACCCAAGGAGCAAGTCTGGGGAGTGTTGCAACCTGTGCATGATCAGgtgagtaagcttttcaggtgaggaagcttttcaatagaaaaagtctacca Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGA---TGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtctaggccacgtaaacattatttcttgctgtttctcttacagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTT---GGTACCCAAGGAGCAAGTCTGGGGAGTGTTGCAACCTGTGCATGATCAGgtgagtaagcttttcaggtgaggaagcttttcaatagaaaaagtctacca Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtctaggccacgtaaacattatttcttgctgtttctcttacagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGGAGCAAGTCTGGGGAGTGTTGCAACCTGTGCATGATCAGgtgagtaagcttttcaggtgaggaagcttttcaatagaaaaagtctacca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtctaggccacgtaaacattatttcttgctgtttctcttacagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGGAGCAAGTCTGGGGAGTGTTGCAACCTGTGCATGATCAGgtgagtaagcttttcaggtgaggaagcttttcaatagaaaaagtctacca #### Nxf1_ID2347_7 --> 0 - 1 Original Alignment CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg cactaacctcaggttaaaagtgtctaggttttgttttttttaattttcagACTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGCAGCTTCGCTTAGACCCTggtaatgcatgcccaatgaacagattattgaggtagtaaatcgggcctttg Alignment from CESAR CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg cactaacctcaggttaaaagtgtctaggttttgttttttttaattttcagACTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGCAGCTTCGCTTAGACCCTggtaatgcatgcccaatgaacagattattgaggtagtaaatcgggcctttg Alignment from Spaln_aa2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaacctcaggttaaaagtgtctaggttttgttttttttaattttcagACTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGCAGCTTCGCTTAGACCCTGgtaatgcatgcccaatgaacagattattgaggtagtaaatcgggcctttg Alignment from Spaln_nt2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaacctcaggttaaaagtgtctaggttttgttttttttaattttcagACTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGCAGCTTCGCTTAGACCCTGgtaatgcatgcccaatgaacagattattgaggtagtaaatcgggcctttg Alignment from Pairagon ------------------------------------------------------TCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG CACTAACCTCAGGTTAAAAGTGTCTAGGTTTTGTTTTTTTTAATTTTCAGACTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGCAGCTTCGCTTAGACCCTGgtaatgcatgcccaatgaacagattattgaggtagtaaatcgggcctttg Alignment from Exonerate_protein2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaacctcaggttaaaagtgtctaggttttgttttttttaattttcagACTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGCAGCTTCGCTTAGACCCTGgtaatgcatgcccaatgaacagattattgaggtagtaaatcgggcctttg Alignment from Exonerate_coding2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaacctcaggttaaaagtgtctaggttttgttttttttaattttcagACTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGCAGCTTCGCTTAGACCCTGgtaatgcatgcccaatgaacagattattgaggtagtaaatcgggcctttg Alignment from GeneWise CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG cactaacctcaggttaaaagtgtctaggttttgttttttttaattttcagACTGTCATGAGCAAACAGTATGACAGTAATCAACAAGCACTGGACCTTAAGCAGCTTCGCTTAGACCCTGgtaatgcatgcccaatgaacagattattgaggtagtaaatcgggcctttg #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccag---TTGTCTTTGAACTTGAGTGGAAACCGGCTATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from CESAR CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccag---TTGTCTTTGAACTTGAGTGGAAACCGGCTATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccag---TTGTCTTTGAACTTGAGTGGAAACCGGCTATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from Spaln_nt2Genome ---- TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA GGAGgcatttgtcatagacaagttcataaactacctcttgtcctacccagTTGTCTTTGAACTTGAGTGGAAACCGGCTATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from Pairagon CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccag---TTGTCTTTGAACTTGAGTGGAAACCGGCTATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from Exonerate_protein2genome TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccagTTGTCTTTGAACTTGAGTGGAAACCGGCTATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from Exonerate_coding2genome TTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccagTTGTCTTTGAACTTGAGTGGAAACCGGCTATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa Alignment from GeneWise CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA ggaggcatttgtcatagacaagttcataaactacctcttgtcctacccagTTG---TCTTTGAACTTGAGTGGAAACCGGCTATTCAAGCTGGATGATATGTCTGGTATTGTACAAACAGCTCCGAATATAAAAACCTTAAATCTTCCTGGTAAAGAGgtatggtggctctcaggataatcaatgatctttaagtaggagtagttgaa #### Nxf1_ID2350_10 --> 0 - 2 Original Alignment TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag cccctgttagggttctgattcctcactggaacacgtgccttccttttcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAACTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCaggtatggtatgaataggagtaccaggatgtagacaagatatgtttagcagg Alignment from CESAR TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag cccctgttagggttctgattcctcactggaacacgtgccttccttttcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAACTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCaggtatggtatgaataggagtaccaggatgtagacaagatatgtttagcagg Alignment from Spaln_aa2Genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG cccctgttagggttctgattcctcactggaacacgtgccttccttttcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAACTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGgtatggtatgaataggagtaccaggatgtagacaagatatgtttagcagg Alignment from Spaln_nt2Genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG cccctgttagggttctgattcctcactggaacacgtgccttccttttcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAACTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGgtatggtatgaataggagtaccaggatgtagacaagatatgtttagcagg Alignment from Pairagon TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG cccctgttagggttctgattcctcactggaacacgtgccttccttttcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAACTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGgtatggtatgaataggagtaccaggatgtagacaagatatgtttagcagg Alignment from Exonerate_protein2genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG cccctgttagggttctgattcctcactggaacacgtgccttccttttcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAACTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGgtatggtatgaataggagtaccaggatgtagacaagatatgtttagcagg Alignment from Exonerate_coding2genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATC cccctgttagggttctgattcctcactggaacacgtgccttccttttcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAACTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCaggtatggtatgaataggagtaccaggatgtagacaagatatgtttagcagg Alignment from GeneWise TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG cccctgttagggttctgattcctcactggaacacgtgccttccttttcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAACTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGgtatggtatgaataggagtaccaggatgtagacaagatatgtttagcagg #### Nxf1_ID2352_12 --> 0 - 0 Original Alignment GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTTCTTTTGATGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from CESAR GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTTCTTTTGATGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from Spaln_aa2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTTCTTTTGATGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from Spaln_nt2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTTCTTTTGATGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from Pairagon GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTTCTTTTGATGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from Exonerate_protein2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTTCTTTTGATGTTGAAGCTCCTACAATGCTACCACCCTGTAAGgtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from Exonerate_coding2genome atcattacaagttcttagtctatcacatcctatgaaaatattttttctaggatggtcatcaggtacctcccccaatttcttttgatgttgaagctcctacaatgctaccaccctgtaaggtgagtgttggaagcattttagtaactcatgagaagatattgcagaacat Alignment from GeneWise GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG-------------------------------------------------- atcattacaagttcttagtctatcacatcctatgaaaatattttttctagGATGGTCATCAGGTACCTCCCCCAATTTCTTTTGATGTTGAAGCTCCTACAATGCTACCACCCTGTAAGGTGAGTGTTGGAAGCATTTTAGTAACTCATGAGAAGATATTGCAGAACAT #### Nxf1_ID2356_16 --> 2 - 0 Original Alignment ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaatttaggggtttaattctaaagcttgaaatacaatcttttattttaagccCAGCGATTCTGC---CTAAAGCATACACGTTTGAATGTAGTTGCCTTTCTTAATGCTTTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAGACAgtaagcgtctgcttgatggttatctgtttaattgagaccaaaaagtgagg Alignment from CESAR ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaatttaggggtttaattctaaagcttgaaatacaatcttttattttaagccCAGCGATTCTGC---CTAAAGCATACACGTTTGAATGTAGTTGCCTTTCTTAATGCTTTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAGACAgtaagcgtctgcttgatggttatctgtttaattgagaccaaaaagtgagg Alignment from Spaln_aa2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaatttaggggtttaattctaaagcttgaaatacaatcttttattttaagCCCAGCGATTCTGC---CTAAAGCATACACGTTTGAATGTAGTTGCCTTTCTTAATGCTTTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAGACAgtaagcgtctgcttgatggttatctgtttaattgagaccaaaaagtgagg Alignment from Spaln_nt2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaatttaggggtttaattctaaagcttgaaatacaatcttttattttaagCCCAGCGATTCTG---CCTAAAGCATACACGTTTGAATGTAGTTGCCTTTCTTAATGCTTTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAGACAgtaagcgtctgcttgatggttatctgtttaattgagaccaaaaagtgagg Alignment from Pairagon CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gaatttaggggtttaattctaaagcttgaaatacaatcttttattttaagCCCAGCGATTCTG---CCTAAAGCATACACGTTTGAATGTAGTTGCCTTTCTTAATGCTTTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAGACAgtaagcgtctgcttgatggttatctgtttaattgagaccaaaaagtgagg Alignment from Exonerate_protein2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGTTTTTCTGTCAATGGAGTC---TTCAAGGA gaatttaggggtttaattctaaagcttgaaatacaatcttttattttaagCCCAGCGATTC---TGCCTAAAGCATACACGTTTGAATGTAGTTGCCTTTCTTAATGCTTTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAGACAGTAAGCGTCTGCTTGATGGTTATCTGTTTAATTGAGACCAAAAAgtgagg Alignment from Exonerate_coding2genome gaatttaggggtttaattctaaagcttgaaatacaatcttttattttaagcccagcgattctgcctaaagcatacacgtttgaatgtagttgcctttcttaatgctttacccaaaactcaacatgacgtcaatgcatttgtagtagacataagtgcacagacagtaagcgtctgcttgatggttatctgtttaattgagaccaaaaagtgagg Alignment from GeneWise CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGTTTTTCTGTC- gaatttaggggtttaattctaaagcttgaaatacaatcttttattttaagCCCAGCGATTC---TGCCTAAAGCATACACGTTTGAATGTAGTTGCCTTTCTTAATGCTTTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAGACAGTAAGCGTCTGCTTGATGGTTATCTgtttaattgagaccaaaaagtgagg #### Nxf1_ID2359_19 --> 1 - 2 Original Alignment gCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaa tgggtcccaaagaccttgcacacaaaggttgtttcgctttgatcccgcaggCTTTGCATTGTGAATGATGAGTTACTTGATCACAACGCTAGTCCTGACAAAATCCAAAGGGCCTTTGCCATGACTGCACCCACGCCATCCTCTGGTCCAATACCAGCACTGTCCACCGAACAACAGGAAATGGTGCAAACATTTTCAACCCAGACTGGTATGAACCTTGATTGGTCTCAAaagtgagtgagggttgaactttgatgtgcctgagcgaatcccctcgcaatat Alignment from CESAR gCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaa tgggtcccaaagaccttgcacacaaaggttgtttcgctttgatcccgcaggCTTTGCATTGTGAATGATGAGTTACTTGATCACAACGCTAGTCCTGACAAAATCCAAAGGGCCTTTGCCATGACTGCACCCACGCCATCCTCTGGTCCAATACCAGCACTGTCCACCGAACAACAGGAAATGGTGCAAACATTTTCAACCCAGACTGGTATGAACCTTGATTGGTCTCAAaagtgagtgagggttgaactttgatgtgcctgagcgaatcccctcgcaatat Alignment from Spaln_aa2Genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA tgggtcccaaagaccttgcacacaaaggttgtttcgctttgatcccgcagGCTTTGCATTGTGAATGATGAGTTACTTGATCACAACGCTAGTCCTGACAAAATCCAAAGGGCCTTTGCCATGACTGCACCCACGCCATCCTCTGGTCCAATACCAGCACTGTCCACCGAACAACAGGAAATGGTGCAAACATTTTCAACCCAGACTGGTATGAACCTTGATTGGTCTCAAAAgtgagtgagggttgaactttgatgtgcctgagcgaatcccctcgcaatat Alignment from Spaln_nt2Genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA tgggtcccaaagaccttgcacacaaaggttgtttcgctttgatcccgcagGCTTTGCATTGTGAATGATGAGTTACTTGATCACAACGCTAGTCCTGACAAAATCCAAAGGGCCTTTGCCATGACTGCACCCACGCCATCCTCTGGTCCAATACCAGCACTGTCCACCGAACAACAGGAAATGGTGCAAACATTTTCAACCCAGACTGGTATGAACCTTGATTGGTCTCAAAAgtgagtgagggttgaactttgatgtgcctgagcgaatcccctcgcaatat Alignment from Pairagon GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA tgggtcccaaagaccttgcacacaaaggttgtttcgctttgatcccgcagGCTTTGCATTGTGAATGATGAGTTACTTGATCACAACGCTAGTCCTGACAAAATCCAAAGGGCCTTTGCCATGACTGCACCCACGCCATCCTCTGGTCCAATACCAGCACTGTCCACCGAACAACAGGAAATGGTGCAAACATTTTCAACCCAGACTGGTATGAACCTTGATTGGTCTCAAAAgtgagtgagggttgaactttgatgtgcctgagcgaatcccctcgcaatat Alignment from Exonerate_protein2genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA tgggtcccaaagaccttgcacacaaaggttgtttcgctttgatcccgcagGCTTTGCATTGTGAATGATGAGTTACTTGATCACAACGCTAGTCCTGACAAAATCCAAAGGGCCTTTGCCATGACTGCACCCACGCCATCCTCTGGTCCAATACCAGCACTGTCCACCGAACAACAGGAAATGGTGCAAACATTTTCAACCCAGACTGGTATGAACCTTGATTGGTCTCAAAAgtgagtgagggttgaactttgatgtgcctgagcgaatcccctcgcaatat Alignment from Exonerate_coding2genome tgggtcccaaagaccttgcacacaaaggttgtttcgctttgatcccgcaggctttgcattgtgaatgatgagttacttgatcacaacgctagtcctgacaaaatccaaagggcctttgccatgactgcacccacgccatcctctggtccaataccagcactgtccaccgaacaacaggaaatggtgcaaacattttcaacccagactggtatgaaccttgattggtctcaaaagtgagtgagggttgaactttgatgtgcctgagcgaatcccctcgcaatat Alignment from GeneWise GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAAG tgggtcccaaagaccttgcacacaaaggttgtttcgctttgatcccgcagGCTTTGCATTGTGAATGATGAGTTACTTGATCACAACGCTAGTCCTGACAAAATCCAAAGGGCCTTTGCCATGACTGCACCCACGCCATCCTCTGGTCCAATACCAGCACTGTCCACCGAACAACAGGAAATGGTGCAAACATTTTCAACCCAGACTGGTATGAACCTTGATTGGTCTCAAAAGtgagtgagggttgaactttgatgtgcctgagcgaatcccctcgcaatat #### Obfc1_ID10230_6 --> 1 - 0 Original Alignment cAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctaggctgtggcttttcatcctgtaacttccgaaatatttttcagtAACAAAGACAATCTGGACCTGGCTGGCCTTACCCCTTTGCTAAGTATAAGAACCAAAGAATTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCAT---TTGCATTCCTTGGCAAGTCAACCTGTGACCCATAGGCCAGGCTCAGACCAGgtacctggtgtgttctcggttagaaacatccaactagtagtatatgaagc Alignment from CESAR cAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctaggctgtggcttttcatcctgtaacttccgaaatatttttcagtAACAAAGACAATCTGGACCTGGCTGGCCTTACCCCTTTGCTAAGTATAAGAACCAAAGAATTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTG---CATTTGCATTCCTTGGCAAGTCAACCTGTGACCCATAGGCCAGGCTCAGACCAGgtacctggtgtgttctcggttagaaacatccaactagtagtatatgaagc Alignment from Spaln_aa2Genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctaggctgtggcttttcatcctgtaacttccgaaatatttttcagTAACAAAGACAATCTGGACCTGGCTGGCCTTACCCCTTTGCTAAGTATAAGAACCAAAGAATTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTG---CATTTGCATTCCTTGGCAAGTCAACCTGTGACCCATAGGCCAGGCTCAGACCAGgtacctggtgtgttctcggttagaaacatccaactagtagtatatgaagc Alignment from Spaln_nt2Genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctaggctgtggcttttcatcctgtaacttccgaaatatttttcagTAACAAAGACAATCTGGACCTGGCTGGCCTTACCCCTTTGCTAAGTATAAGAACCAAAGAATTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCA---TTTGCATTCCTTGGCAAGTCAACCTGTGACCCATAGGCCAGGCTCAGACCAGgtacctggtgtgttctcggttagaaacatccaactagtagtatatgaagc Alignment from Pairagon CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctaggctgtggcttttcatcctgtaacttccgaaatatttttcagTAACAAAGACAATCTGGACCTGGCTGGCCTTACCCCTTTGCTAAGTATAAGAACCAAAGAATTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCA---TTTGCATTCCTTGGCAAGTCAACCTGTGACCCATAGGCCAGGCTCAGACCAGgtacctggtgtgttctcggttagaaacatccaactagtagtatatgaagc Alignment from Exonerate_protein2genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctaggctgtggcttttcatcctgtaacttccgaaatatttttcagTAACAAAGACAATCTGGACCTGGCTGGCCTTACCCCTTTGCTAAGTATAAGAACCAAAGAATTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCAT---TTGCATTCCTTGGCAAGTCAACCTGTGACCCATAGGCCAGGCTCAGACCAGgtacctggtgtgttctcggttagaaacatccaactagtagtatatgaagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctaggctgtggcttttcatcctgtaacttccgaaatatttttcagTAACAAAGACAATCTGGACCTGGCTGGCCTTACCCCTTTGCTAAGTATAAGAACCAAAGAATTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCAT---TTGCATTCCTTGGCAAGTCAACCTGTGACCCATAGGCCAGGCTCAGACCAGgtacctggtgtgttctcggttagaaacatccaactagtagtatatgaagc #### Obfc1_ID10235_2 --> 2 - 1 Original Alignment gtACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAg ctcttagagggacagctcacagtttttgctccaaccttctcttcccccaggaACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATggtaagtatagtctttgttccaaatgggctcctgtgtataccagccaagtg Alignment from CESAR gtACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAg ctcttagagggacagctcacagtttttgctccaaccttctcttcccccaggaACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATggtaagtatagtctttgttccaaatgggctcctgtgtataccagccaagtg Alignment from Spaln_aa2Genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG ctcttagagggacagctcacagtttttgctccaaccttctcttcccccagGAACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATGgtaagtatagtctttgttccaaatgggctcctgtgtataccagccaagtg Alignment from Spaln_nt2Genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG ctcttagagggacagctcacagtttttgctccaaccttctcttcccccagGAACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATGgtaagtatagtctttgttccaaatgggctcctgtgtataccagccaagtg Alignment from Pairagon GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG ctcttagagggacagctcacagtttttgctccaaccttctcttcccccagGAACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATGgtaagtatagtctttgttccaaatgggctcctgtgtataccagccaagtg Alignment from Exonerate_protein2genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG ctcttagagggacagctcacagtttttgctccaaccttctcttcccccagGAACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATGgtaagtatagtctttgttccaaatgggctcctgtgtataccagccaagtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG ctcttagagggacagctcacagtttttgctccaaccttctcttcccccagGAACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATGgtaagtatagtctttgttccaaatgggctcctgtgtataccagccaagtg #### Oosp1_ID3265_2 --> 2 - 0 Original Alignment ccATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcgtgtggtgaccccaaaataggacctctgtcctcttttcacagccATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACATACTCTTGTGGTATTGCCAATAAAgtaaccaaggagagcaaactcaaaagcccacctcagtttacatcactagt Alignment from CESAR ccATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcgtgtggtgaccccaaaataggacctctgtcctcttttcacagccATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACATACTCTTGTGGTATTGCCAATAAAgtaaccaaggagagcaaactcaaaagcccacctcagtttacatcactagt Alignment from Spaln_aa2Genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcgtgtggtgaccccaaaataggacctctgtcctcttttcacagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACATACTCTTGTGGTATTGCCAATAAAgtaaccaaggagagcaaactcaaaagcccacctcagtttacatcactagt Alignment from Spaln_nt2Genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcgtgtggtgaccccaaaataggacctctgtcctcttttcacagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACATACTCTTGTGGTATTGCCAATAAAgtaaccaaggagagcaaactcaaaagcccacctcagtttacatcactagt Alignment from Pairagon CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcgtgtggtgaccccaaaataggacctctgtcctcttttcacagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACATACTCTTGTGGTATTGCCAATAAAgtaaccaaggagagcaaactcaaaagcccacctcagtttacatcactagt Alignment from Exonerate_protein2genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcgtgtggtgaccccaaaataggacctctgtcctcttttcacagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACATACTCTTGTGGTATTGCCAATAAAgtaaccaaggagagcaaactcaaaagcccacctcagtttacatcactagt Alignment from Exonerate_coding2genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAAGTTCTTTGT ccagtgtcgtgtggtgaccccaaaataggacctctgtcctcttttcacagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACATACTCTTGTGGTATTGCCAATAAAGTAACCAAGgagagcaaactcaaaagcccacctcagtttacatcactagt Alignment from GeneWise CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcgtgtggtgaccccaaaataggacctctgtcctcttttcacagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACATACTCTTGTGGTATTGCCAATAAAgtaaccaaggagagcaaactcaaaagcccacctcagtttacatcactagt #### Oosp3_ID3271_3 --> 0 - 2 Original Alignment CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCag gcctgatgtactctagcagacacccaggctgttttatttttgttttctagCATGCATTTGATGGTACACTAGTGGCTACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCAATCAATTACACCCaggtatgtagaatctttcccaacatcaaggatgcagttatgtcatgctaaag Alignment from CESAR CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCag gcctgatgtactctagcagacacccaggctgttttatttttgttttctagCATGCATTTGATGGTACACTAGTGGCTACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCAATCAATTACACCCaggtatgtagaatctttcccaacatcaaggatgcagttatgtcatgctaaag Alignment from Spaln_aa2Genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG gcctgatgtactctagcagacacccaggctgttttatttttgttttctagCATGCATTTGATGGTACACTAGTGGCTACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCAATCAATTACACCCAGgtatgtagaatctttcccaacatcaaggatgcagttatgtcatgctaaag Alignment from Spaln_nt2Genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG gcctgatgtactctagcagacacccaggctgttttatttttgttttctagCATGCATTTGATGGTACACTAGTGGCTACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCAATCAATTACACCCAGgtatgtagaatctttcccaacatcaaggatgcagttatgtcatgctaaag Alignment from Pairagon CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG gcctgatgtactctagcagacacccaggctgttttatttttgttttctagCATGCATTTGATGGTACACTAGTGGCTACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCAATCAATTACACCCAGgtatgtagaatctttcccaacatcaaggatgcagttatgtcatgctaaag Alignment from Exonerate_protein2genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG gcctgatgtactctagcagacacccaggctgttttatttttgttttctagCATGCATTTGATGGTACACTAGTGGCTACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCAATCAATTACACCCAGgtatgtagaatctttcccaacatcaaggatgcagttatgtcatgctaaag Alignment from Exonerate_coding2genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG gcctgatgtactctagcagacacccaggctgttttatttttgttttctagCATGCATTTGATGGTACACTAGTGGCTACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCAATCAATTACACCCAGgtatgtagaatctttcccaacatcaaggatgcagttatgtcatgctaaag Alignment from GeneWise CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG gcctgatgtactctagcagacacccaggctgttttatttttgttttctagCATGCATTTGATGGTACACTAGTGGCTACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCAATCAATTACACCCAGgtatgtagaatctttcccaacatcaaggatgcagttatgtcatgctaaag #### Oosp3_ID3273_5 --> 1 - 0 Original Alignment tGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG gatctgttctaagcatagatgaagatggcaatttgttttcttcctaacagcGAGTCTATTGATGCAGGGAATCTCCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTGCTAAAGAGGTATTGTGTTATTTGTGGCCATTTCCACTTTCCCAACAACTGGgtataacctccccagcatgcgccactttagtggagtcatggccaaagtgt Alignment from CESAR tGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG gatctgttctaagcatagatgaagatggcaatttgttttcttcctaacagcGAGTCTATTGATGCAGGGAATCTCCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTGCTAAAGAGGTATTGTGTTATTTGTGGCCATTTCCACTTTCCCAACAACTGGgtataacctccccagcatgcgccactttagtggagtcatggccaaagtgt Alignment from Spaln_aa2Genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG gatctgttctaagcatagatgaagatggcaatttgttttcttcctaacagCGAGTCTATTGATGCAGGGAATCTCCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTGCTAAAGAGGTATTGTGTTATTTGTGGCCATTTCCACTTTCCCAACAACTGGgtataacctccccagcatgcgccactttagtggagtcatggccaaagtgt Alignment from Spaln_nt2Genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG gatctgttctaagcatagatgaagatggcaatttgttttcttcctaacagCGAGTCTATTGATGCAGGGAATCTCCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTGCTAAAGAGGTATTGTGTTATTTGTGGCCATTTCCACTTTCCCAACAACTGGgtataacctccccagcatgcgccactttagtggagtcatggccaaagtgt Alignment from Pairagon TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG gatctgttctaagcatagatgaagatggcaatttgttttcttcctaacagCGAGTCTATTGATGCAGGGAATCTCCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTGCTAAAGAGGTATTGTGTTATTTGTGGCCATTTCCACTTTCCCAACAACTGGgtataacctccccagcatgcgccactttagtggagtcatggccaaagtgt Alignment from Exonerate_protein2genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG gatctgttctaagcatagatgaagatggcaatttgttttcttcctaacagCGAGTCTATTGATGCAGGGAATCTCCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTGCTAAAGAGGTATTGTGTTATTTGTGGCCATTTCCACTTTCCCAACAACTGGgtataacctccccagcatgcgccactttagtggagtcatggccaaagtgt Alignment from Exonerate_coding2genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG gatctgttctaagcatagatgaagatggcaatttgttttcttcctaacagCGAGTCTATTGATGCAGGGAATCTCCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTGCTAAAGAGGTATTGTGTTATTTGTGGCCATTTCCACTTTCCCAACAACTGGgtataacctccccagcatgcgccactttagtggagtcatggccaaagtgt Alignment from GeneWise TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG gatctgttctaagcatagatgaagatggcaatttgttttcttcctaacagCGAGTCTATTGATGCAGGGAATCTCCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTGCTAAAGAGGTATTGTGTTATTTGTGGCCATTTCCACTTTCCCAACAACTGGgtataacctccccagcatgcgccactttagtggagtcatggccaaagtgt #### Opalin_ID8090_5 --> 0 - 0 Original Alignment GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atgcatatgagtatcactcttttggatagttaatgagttcctctttacagGAGACGGAGATCCCATGTGAAATTGCAGAGCTCTTTGACAATCCA---ATATCTGAGgtcagtgtacgtgacagcttgtaagtactgatatgcttgtcagacaaata Alignment from CESAR GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atgcatatgagtatcactcttttggatagttaatgagttcctctttacagGAGACGGAGATCCCATGTGAAATTGCAGAGCTCTTTGACAATCCA---ATATCTGAGgtcagtgtacgtgacagcttgtaagtactgatatgcttgtcagacaaata Alignment from Spaln_aa2Genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atgcatatgagtatcactcttttggatagttaatgagttcctctttacagGAGACGGAGATCCCATGTGAAATTGCAGAGCTCTTTGACAATCCA---ATATCTGAGgtcagtgtacgtgacagcttgtaagtactgatatgcttgtcagacaaata Alignment from Spaln_nt2Genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atgcatatgagtatcactcttttggatagttaatgagttcctctttacagGAGACGGAGATCCCATGTGAAATTGCAGAGCTCTTTGACAATCC---AATATCTGAGgtcagtgtacgtgacagcttgtaagtactgatatgcttgtcagacaaata Alignment from Pairagon GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atgcatatgagtatcactcttttggatagttaatgagttcctctttacagGAGACGGAGATCCCATGTGAAATTGCAGAGCTCTTTGACAATCC---AATATCTGAGgtcagtgtacgtgacagcttgtaagtactgatatgcttgtcagacaaata Alignment from Exonerate_protein2genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atgcatatgagtatcactcttttggatagttaatgagttcctctttacagGAGACGGAGATCCCATGTGAAATTGCAGAGCTCTTTGACAATCCA---ATATCTGAGgtcagtgtacgtgacagcttgtaagtactgatatgcttgtcagacaaata Alignment from Exonerate_coding2genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atgcatatgagtatcactcttttggatagttaatgagttcctctttacagGAGACGGAGATCCCATGTGAAATTGCAGAGCTCTTTGACAATCCA---ATATCTGAGgtcagtgtacgtgacagcttgtaagtactgatatgcttgtcagacaaata Alignment from GeneWise GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atgcatatgagtatcactcttttggatagttaatgagttcctctttacagGAGACGGAGATCCCATGTGAAATTGCAGAGCTCTTTGACAATCCA---ATATCTGAGgtcagtgtacgtgacagcttgtaagtactgatatgcttgtcagacaaata #### Osbp_ID3345_4 --> 0 - 1 Original Alignment GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAg gtcttagggcctgtaaaaaatctgctactctgtgtttctgtctcccatagTCATGCCGGGATTTCCTCATGTTGGTACGAACTCATAGTAAGAAATGGCAAAAGTCAGTCCAGTATGAAAGGGAGCAAAGAATGCAACTGGAGGTTACCCTTGAACAACTTGAAAAACAGCACAATCGTCTGAAGAGGGGCTTCCAAGGAGCCACAGTACTCCCCACAAACCCTCCAGGGAGTGCTGGGTCTGGTCATggtatgttatttggccactgaatgctctctctaccattaaggaccaattac Alignment from CESAR GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAg gtcttagggcctgtaaaaaatctgctactctgtgtttctgtctcccatagTCATGCCGGGATTTCCTCATGTTGGTACGAACTCATAGTAAGAAATGGCAAAAGTCAGTCCAGTATGAAAGGGAGCAAAGAATGCAACTGGAGGTTACCCTTGAACAACTTGAAAAACAGCACAATCGTCTGAAGAGGGGCTTCCAAGGAGCCACAGTACTCCCCACAAACCCTCCAGGGAGTGCTGGGTCTGGTCATggtatgttatttggccactgaatgctctctctaccattaaggaccaattac Alignment from Spaln_aa2Genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG gtcttagggcctgtaaaaaatctgctactctgtgtttctgtctcccatagTCATGCCGGGATTTCCTCATGTTGGTACGAACTCATAGTAAGAAATGGCAAAAGTCAGTCCAGTATGAAAGGGAGCAAAGAATGCAACTGGAGGTTACCCTTGAACAACTTGAAAAACAGCACAATCGTCTGAAGAGGGGCTTCCAAGGAGCCACAGTACTCCCCACAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgtatgttatttggccactgaatgctctctctaccattaaggaccaattac Alignment from Spaln_nt2Genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG gtcttagggcctgtaaaaaatctgctactctgtgtttctgtctcccatagTCATGCCGGGATTTCCTCATGTTGGTACGAACTCATAGTAAGAAATGGCAAAAGTCAGTCCAGTATGAAAGGGAGCAAAGAATGCAACTGGAGGTTACCCTTGAACAACTTGAAAAACAGCACAATCGTCTGAAGAGGGGCTTCCAAGGAGCCACAGTACTCCCCACAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgtatgttatttggccactgaatgctctctctaccattaaggaccaattac Alignment from Pairagon GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG gtcttagggcctgtaaaaaatctgctactctgtgtttctgtctcccatagTCATGCCGGGATTTCCTCATGTTGGTACGAACTCATAGTAAGAAATGGCAAAAGTCAGTCCAGTATGAAAGGGAGCAAAGAATGCAACTGGAGGTTACCCTTGAACAACTTGAAAAACAGCACAATCGTCTGAAGAGGGGCTTCCAAGGAGCCACAGTACTCCCCACAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgtatgttatttggccactgaatgctctctctaccattaaggaccaattac Alignment from Exonerate_protein2genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG gtcttagggcctgtaaaaaatctgctactctgtgtttctgtctcccatagTCATGCCGGGATTTCCTCATGTTGGTACGAACTCATAGTAAGAAATGGCAAAAGTCAGTCCAGTATGAAAGGGAGCAAAGAATGCAACTGGAGGTTACCCTTGAACAACTTGAAAAACAGCACAATCGTCTGAAGAGGGGCTTCCAAGGAGCCACAGTACTCCCCACAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgtatgttatttggccactgaatgctctctctaccattaaggaccaattac Alignment from Exonerate_coding2genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG gtcttagggcctgtaaaaaatctgctactctgtgtttctgtctcccatagTCATGCCGGGATTTCCTCATGTTGGTACGAACTCATAGTAAGAAATGGCAAAAGTCAGTCCAGTATGAAAGGGAGCAAAGAATGCAACTGGAGGTTACCCTTGAACAACTTGAAAAACAGCACAATCGTCTGAAGAGGGGCTTCCAAGGAGCCACAGTACTCCCCACAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgtatgttatttggccactgaatgctctctctaccattaaggaccaattac Alignment from GeneWise GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG gtcttagggcctgtaaaaaatctgctactctgtgtttctgtctcccatagTCATGCCGGGATTTCCTCATGTTGGTACGAACTCATAGTAAGAAATGGCAAAAGTCAGTCCAGTATGAAAGGGAGCAAAGAATGCAACTGGAGGTTACCCTTGAACAACTTGAAAAACAGCACAATCGTCTGAAGAGGGGCTTCCAAGGAGCCACAGTACTCCCCACAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgtatgttatttggccactgaatgctctctctaccattaaggaccaattac #### Otub1_ID2061_5 --> 1 - 0 Original Alignment gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG tatctggaccagtaagattctgctggaattaacatctcactctttttaaggTTTAGAGCAGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgaggaagacttccctaacacagtgagcatccccaccaatacttaaccc Alignment from CESAR gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG tatctggaccagtaagattctgctggaattaacatctcactctttttaaggTTTAGAGCAGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgaggaagacttccctaacacagtgagcatccccaccaatacttaaccc Alignment from Spaln_aa2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG tatctggaccagtaagattctgctggaattaacatctcactctttttaagGTTTAGAGCAGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgaggaagacttccctaacacagtgagcatccccaccaatacttaaccc Alignment from Spaln_nt2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG tatctggaccagtaagattctgctggaattaacatctcactctttttaagGTTTAGAGCAGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgaggaagacttccctaacacagtgagcatccccaccaatacttaaccc Alignment from Pairagon GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG tatctggaccagtaagattctgctggaattaacatctcactctttttaagGTTTAGAGCAGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgaggaagacttccctaacacagtgagcatccccaccaatacttaaccc Alignment from Exonerate_protein2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG tatctggaccagtaagattctgctggaattaacatctcactctttttaagGTTTAGAGCAGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgaggaagacttccctaacacagtgagcatccccaccaatacttaaccc Alignment from Exonerate_coding2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG tatctggaccagtaagattctgctggaattaacatctcactctttttaagGTTTAGAGCAGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgaggaagacttccctaacacagtgagcatccccaccaatacttaaccc Alignment from GeneWise GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG tatctggaccagtaagattctgctggaattaacatctcactctttttaagGTTTAGAGCAGTGTCAGCTAAGAGTAAAGAACACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCCCAACACAgtgaggaagacttccctaacacagtgagcatccccaccaatacttaaccc #### Otub1_ID2063_3 --> 0 - 0 Original Alignment ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG tctaatatgagtgttaggcccaactttccgtgctcactgttggtctgtagATTGCTGTACAAAATCCTCGTGTGTCAGAGCGTTTGGAGCTTTCTGTCCTTTGCAAGGAATATGCGGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgagtcagaacatttgcaactagctacggctatggcaactttgtaggga Alignment from CESAR ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG tctaatatgagtgttaggcccaactttccgtgctcactgttggtctgtagATTGCTGTACAAAATCCTCGTGTGTCAGAGCGTTTGGAGCTTTCTGTCCTTTGCAAGGAATATGCGGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgagtcagaacatttgcaactagctacggctatggcaactttgtaggga Alignment from Spaln_aa2Genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG tctaatatgagtgttaggcccaactttccgtgctcactgttggtctgtagATTGCTGTACAAAATCCTCGTGTGTCAGAGCGTTTGGAGCTTTCTGTCCTTTGCAAGGAATATGCGGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgagtcagaacatttgcaactagctacggctatggcaactttgtaggga Alignment from Spaln_nt2Genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG tctaatatgagtgttaggcccaactttccgtgctcactgttggtctgtagATTGCTGTACAAAATCCTCGTGTGTCAGAGCGTTTGGAGCTTTCTGTCCTTTGCAAGGAATATGCGGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgagtcagaacatttgcaactagctacggctatggcaactttgtaggga Alignment from Pairagon ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG tctaatatgagtgttaggcccaactttccgtgctcactgttggtctgtagATTGCTGTACAAAATCCTCGTGTGTCAGAGCGTTTGGAGCTTTCTGTCCTTTGCAAGGAATATGCGGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgagtcagaacatttgcaactagctacggctatggcaactttgtaggga Alignment from Exonerate_protein2genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG tctaatatgagtgttaggcccaactttccgtgctcactgttggtctgtagATTGCTGTACAAAATCCTCGTGTGTCAGAGCGTTTGGAGCTTTCTGTCCTTTGCAAGGAATATGCGGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgagtcagaacatttgcaactagctacggctatggcaactttgtaggga Alignment from Exonerate_coding2genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG tctaatatgagtgttaggcccaactttccgtgctcactgttggtctgtagATTGCTGTACAAAATCCTCGTGTGTCAGAGCGTTTGGAGCTTTCTGTCCTTTGCAAGGAATATGCGGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgagtcagaacatttgcaactagctacggctatggcaactttgtaggga Alignment from GeneWise ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG tctaatatgagtgttaggcccaactttccgtgctcactgttggtctgtagATTGCTGTACAAAATCCTCGTGTGTCAGAGCGTTTGGAGCTTTCTGTCCTTTGCAAGGAATATGCGGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgagtcagaacatttgcaactagctacggctatggcaactttgtaggga #### Ovol1_ID1085_3 --> 0 - 1 Original Alignment GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTg taatggttaattgtagaaggacctgttaggaatgtaattttatcttctagGTTACCTTGGGTGACAGTCCTAATGGGGAGCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTAAATCGACACATGAAGTGTCATAATGATGTCAAGAGGCACCTTTGCACTTATTGTGGGAAGGGCTTCAATGATACCTTTGACCTCAGGAGACATGTTCGAACCCACACTggtacccacaatagggatttcccttgctccaaaccccaggacctgagaaaa Alignment from CESAR GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTg taatggttaattgtagaaggacctgttaggaatgtaattttatcttctagGTTACCTTGGGTGACAGTCCTAATGGGGAGCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTAAATCGACACATGAAGTGTCATAATGATGTCAAGAGGCACCTTTGCACTTATTGTGGGAAGGGCTTCAATGATACCTTTGACCTCAGGAGACATGTTCGAACCCACACTggtacccacaatagggatttcccttgctccaaaccccaggacctgagaaaa Alignment from Spaln_aa2Genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG taatggttaattgtagaaggacctgttaggaatgtaattttatcttctagGTTACCTTGGGTGACAGTCCTAATGGGGAGCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTAAATCGACACATGAAGTGTCATAATGATGTCAAGAGGCACCTTTGCACTTATTGTGGGAAGGGCTTCAATGATACCTTTGACCTCAGGAGACATGTTCGAACCCACACTGgtacccacaatagggatttcccttgctccaaaccccaggacctgagaaaa Alignment from Spaln_nt2Genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG taatggttaattgtagaaggacctgttaggaatgtaattttatcttctagGTTACCTTGGGTGACAGTCCTAATGGGGAGCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTAAATCGACACATGAAGTGTCATAATGATGTCAAGAGGCACCTTTGCACTTATTGTGGGAAGGGCTTCAATGATACCTTTGACCTCAGGAGACATGTTCGAACCCACACTGgtacccacaatagggatttcccttgctccaaaccccaggacctgagaaaa Alignment from Pairagon GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG taatggttaattgtagaaggacctgttaggaatgtaattttatcttctagGTTACCTTGGGTGACAGTCCTAATGGGGAGCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTAAATCGACACATGAAGTGTCATAATGATGTCAAGAGGCACCTTTGCACTTATTGTGGGAAGGGCTTCAATGATACCTTTGACCTCAGGAGACATGTTCGAACCCACACTGgtacccacaatagggatttcccttgctccaaaccccaggacctgagaaaa Alignment from Exonerate_protein2genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG taatggttaattgtagaaggacctgttaggaatgtaattttatcttctagGTTACCTTGGGTGACAGTCCTAATGGGGAGCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTAAATCGACACATGAAGTGTCATAATGATGTCAAGAGGCACCTTTGCACTTATTGTGGGAAGGGCTTCAATGATACCTTTGACCTCAGGAGACATGTTCGAACCCACACTGgtacccacaatagggatttcccttgctccaaaccccaggacctgagaaaa Alignment from Exonerate_coding2genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG taatggttaattgtagaaggacctgttaggaatgtaattttatcttctagGTTACCTTGGGTGACAGTCCTAATGGGGAGCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTAAATCGACACATGAAGTGTCATAATGATGTCAAGAGGCACCTTTGCACTTATTGTGGGAAGGGCTTCAATGATACCTTTGACCTCAGGAGACATGTTCGAACCCACACTGgtacccacaatagggatttcccttgctccaaaccccaggacctgagaaaa Alignment from GeneWise GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG taatggttaattgtagaaggacctgttaggaatgtaattttatcttctagGTTACCTTGGGTGACAGTCCTAATGGGGAGCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTAAATCGACACATGAAGTGTCATAATGATGTCAAGAGGCACCTTTGCACTTATTGTGGGAAGGGCTTCAATGATACCTTTGACCTCAGGAGACATGTTCGAACCCACACTGgtacccacaatagggatttcccttgctccaaaccccaggacctgagaaaa #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcaggcTCACATCCTGTAGCC------ATAGGCTCTGTGGACAGCAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAggtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcaggcTCACATCCTGTAGCC------ATAGGCTCTGTGGACAGCAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAggtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcagGCTCACATCCTGTAGCC------ATAGGCTCTGTGGACAGCAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAGgtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcagGCTCACATCCTGTAGCCA------TAGGCTCTGTGGACAGCAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAGgtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcagGCTCACATCCTGTAGCCA------TAGGCTCTGTGGACAGCAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAGgtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcagGCTCACATCCTGTAGCC------ATAGGCTCTGTGGACAGCAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAGgtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from Exonerate_coding2genome atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcaggctcacatcctgtagccataggctctgtggacagcaggtatagcagtacttttctagatcctgcatcaaaagatctattcagccagtcagagcccctggtgtcaggtgagtcccattagtagcagtttgctacctttggtactatctcctatgac Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG atgctaattgtatgtttggaatgagtaacattccctgttcctgtgtgcagGCTCACATCCTGTAGCC------ATAGGCTCTGTGGACAGCAGGTATAGCAGTACTTTTCTAGATCCTGCATCAAAAGATCTATTCAGCCAGTCAGAGCCCCTGGTGTCAGgtgagtcccattagtagcagtttgctacctttggtactatctcctatgac #### Pacs1_ID879_15 --> 0 - 2 Original Alignment TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCta actgtttaagctggattcttttcaaggtgcggaaggtctctccctcacagTACGTTGCTAAACTGCTTCAGGATCAACGGAAGCCTGTGGTATGTGCATGCTCACCAATAGAAGTCCAGGCAGTTGTCTCAGCTCTTCTCACACGGAGTCAGCGAtagtaagtggctgtgtgtgcatagctgatgtacatatgcataggtgatgtac Alignment from CESAR TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCta actgtttaagctggattcttttcaaggtgcggaaggtctctccctcacagTACGTTGCTAAACTGCTTCAGGATCAACGGAAGCCTGTGGTATGTGCATGCTCACCAATAGAAGTCCAGGCAGTTGTCTCAGCTCTTCTCACACGGAGTCAGCGAtagtaagtggctgtgtgtgcatagctgatgtacatatgcataggtgatgtac Alignment from Spaln_aa2Genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA actgtttaagctggattcttttcaaggtgcggaaggtctctccctcacagTACGTTGCTAAACTGCTTCAGGATCAACGGAAGCCTGTGGTATGTGCATGCTCACCAATAGAAGTCCAGGCAGTTGTCTCAGCTCTTCTCACACGGAGTCAGCGATAgtaagtggctgtgtgtgcatagctgatgtacatatgcataggtgatgtac Alignment from Spaln_nt2Genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA actgtttaagctggattcttttcaaggtgcggaaggtctctccctcacagTACGTTGCTAAACTGCTTCAGGATCAACGGAAGCCTGTGGTATGTGCATGCTCACCAATAGAAGTCCAGGCAGTTGTCTCAGCTCTTCTCACACGGAGTCAGCGATAgtaagtggctgtgtgtgcatagctgatgtacatatgcataggtgatgtac Alignment from Pairagon TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA actgtttaagctggattcttttcaaggtgcggaaggtctctccctcacagTACGTTGCTAAACTGCTTCAGGATCAACGGAAGCCTGTGGTATGTGCATGCTCACCAATAGAAGTCCAGGCAGTTGTCTCAGCTCTTCTCACACGGAGTCAGCGATAgtaagtggctgtgtgtgcatagctgatgtacatatgcataggtgatgtac Alignment from Exonerate_protein2genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA actgtttaagctggattcttttcaaggtgcggaaggtctctccctcacagTACGTTGCTAAACTGCTTCAGGATCAACGGAAGCCTGTGGTATGTGCATGCTCACCAATAGAAGTCCAGGCAGTTGTCTCAGCTCTTCTCACACGGAGTCAGCGATAgtaagtggctgtgtgtgcatagctgatgtacatatgcataggtgatgtac Alignment from Exonerate_coding2genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA actgtttaagctggattcttttcaaggtgcggaaggtctctccctcacagTACGTTGCTAAACTGCTTCAGGATCAACGGAAGCCTGTGGTATGTGCATGCTCACCAATAGAAGTCCAGGCAGTTGTCTCAGCTCTTCTCACACGGAGTCAGCGATAgtaagtggctgtgtgtgcatagctgatgtacatatgcataggtgatgtac Alignment from GeneWise TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA actgtttaagctggattcttttcaaggtgcggaaggtctctccctcacagTACGTTGCTAAACTGCTTCAGGATCAACGGAAGCCTGTGGTATGTGCATGCTCACCAATAGAAGTCCAGGCAGTTGTCTCAGCTCTTCTCACACGGAGTCAGCGATAgtaagtggctgtgtgtgcatagctgatgtacatatgcataggtgatgtac #### Pacs1_ID886_8 --> 0 - 0 Original Alignment CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG ggagggaagttgcatcccagggattgataatagagtgttttctcacccagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCTTTCAAAGTGTCAGATGAGgtgagatactttgttacctcataaccaggttaatataaccaaagattaca Alignment from CESAR CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG ggagggaagttgcatcccagggattgataatagagtgttttctcacccagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCTTTCAAAGTGTCAGATGAGgtgagatactttgttacctcataaccaggttaatataaccaaagattaca Alignment from Spaln_aa2Genome CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG ggagggaagttgcatcccagggattgataatagagtgttttctcacccagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCTTTCAAAGTGTCAGATGAGgtgagatactttgttacctcataaccaggttaatataaccaaagattaca Alignment from Spaln_nt2Genome CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG ggagggaagttgcatcccagggattgataatagagtgttttctcacccagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCTTTCAAAGTGTCAGATGAGgtgagatactttgttacctcataaccaggttaatataaccaaagattaca Alignment from Pairagon CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG ggagggaagttgcatcccagggattgataatagagtgttttctcacccagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCTTTCAAAGTGTCAGATGAGgtgagatactttgttacctcataaccaggttaatataaccaaagattaca Alignment from Exonerate_protein2genome CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG ggagggaagttgcatcccagggattgataatagagtgttttctcacccagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCTTTCAAAGTGTCAGATGAGgtgagatactttgttacctcataaccaggttaatataaccaaagattaca Alignment from Exonerate_coding2genome CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG ggagggaagttgcatcccagggattgataatagagtgttttctcacccagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCTTTCAAAGTGTCAGATGAGgtgagatactttgttacctcataaccaggttaatataaccaaagattaca Alignment from GeneWise CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG ggagggaagttgcatcccagggattgataatagagtgttttctcacccagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCTTTCAAAGTGTCAGATGAGgtgagatactttgttacctcataaccaggttaatataaccaaagattaca #### Pacs1_ID891_3 --> 0 - 0 Original Alignment GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGC---CTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cctgcaatcaagaataacctatccaacatcctactgttctttctctgtagGGCTCAAAAAGGATTCTTCATTCCAACGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCACTCCAGgtacggaaagtctaaatactgtgcgactgttctcctagttagttagcagc Alignment from CESAR GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGC---CTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cctgcaatcaagaataacctatccaacatcctactgttctttctctgtagGGCTCAAAAAGGATTCTTCATTCCAACGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCACTCCAGgtacggaaagtctaaatactgtgcgactgttctcctagttagttagcagc Alignment from Spaln_aa2Genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGT---GGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cctgcaatcaagaataacctatccaacatcctactgttctttctctgtagGGCTCAAAAAGGATTCTTCATTCCAACGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCACTCCAGgtacggaaagtctaaatactgtgcgactgttctcctagttagttagcagc Alignment from Spaln_nt2Genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGC---CTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cctgcaatcaagaataacctatccaacatcctactgttctttctctgtagGGCTCAAAAAGGATTCTTCATTCCAACGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCACTCCAGgtacggaaagtctaaatactgtgcgactgttctcctagttagttagcagc Alignment from Pairagon GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCA---GTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cctgcaatcaagaataacctatccaacatcctactgttctttctctgtagGGCTCAAAAAGGATTCTTCATTCCAACGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCACTCCAGgtacggaaagtctaaatactgtgcgactgttctcctagttagttagcagc Alignment from Exonerate_protein2genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGT---GGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cctgcaatcaagaataacctatccaacatcctactgttctttctctgtagGGCTCAAAAAGGATTCTTCATTCCAACGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCACTCCAGgtacggaaagtctaaatactgtgcgactgttctcctagttagttagcagc Alignment from Exonerate_coding2genome cctgcaatcaagaataacctatccaacatcctactgttctttctctgtagggctcaaaaaggattcttcattccaacgagattatacttccagccagtggtggtcttgtggagacagaactccagttgaccttcccactccaggtacggaaagtctaaatactgtgcgactgttctcctagttagttagcagc Alignment from GeneWise GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGC---CTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cctgcaatcaagaataacctatccaacatcctactgttctttctctgtagGGCTCAAAAAGGATTCTTCATTCCAACGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCACTCCAGgtacggaaagtctaaatactgtgcgactgttctcctagttagttagcagc #### Pank1_ID6983_6 --> 0 - 0 Original Alignment AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcatagcttgattgagtctcagcatgctttttctacttttgaaagAACATCGGCAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCTTACGGCATGGACTTTTGGTCAAAGGGAATGTCAATAGCACTATTCCTGGAGCATGAGgtaagagaggtccttaagattgcctcatccattctactcatagaatacac Alignment from CESAR AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcatagcttgattgagtctcagcatgctttttctacttttgaaagAACATCGGCAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCTTACGGCATGGACTTTTGGTCAAAGGGAATGTCAATAGCACTATTCCTGGAGCATGAGgtaagagaggtccttaagattgcctcatccattctactcatagaatacac Alignment from Spaln_aa2Genome AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcatagcttgattgagtctcagcatgctttttctacttttgaaagAACATCGGCAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCTTACGGCATGGACTTTTGGTCAAAGGGAATGTCAATAGCACTATTCCTGGAGCATGAGgtaagagaggtccttaagattgcctcatccattctactcatagaatacac Alignment from Spaln_nt2Genome AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcatagcttgattgagtctcagcatgctttttctacttttgaaagAACATCGGCAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCTTACGGCATGGACTTTTGGTCAAAGGGAATGTCAATAGCACTATTCCTGGAGCATGAGgtaagagaggtccttaagattgcctcatccattctactcatagaatacac Alignment from Pairagon AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcatagcttgattgagtctcagcatgctttttctacttttgaaagAACATCGGCAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCTTACGGCATGGACTTTTGGTCAAAGGGAATGTCAATAGCACTATTCCTGGAGCATGAGgtaagagaggtccttaagattgcctcatccattctactcatagaatacac Alignment from Exonerate_protein2genome AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcatagcttgattgagtctcagcatgctttttctacttttgaaagAACATCGGCAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCTTACGGCATGGACTTTTGGTCAAAGGGAATGTCAATAGCACTATTCCTGGAGCATGAGgtaagagaggtccttaagattgcctcatccattctactcatagaatacac Alignment from Exonerate_coding2genome tggggtcatagcttgattgagtctcagcatgctttttctacttttgaaagaacatcggcagggttgtgtttgttgggaactttctcaggatcaatatggtctcaatgaagttacttgcttacggcatggacttttggtcaaagggaatgtcaatagcactattcctggagcatgaggtaagagaggtccttaagattgcctcatccattctactcatagaatacac Alignment from GeneWise AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcatagcttgattgagtctcagcatgctttttctacttttgaaagAACATCGGCAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCTTACGGCATGGACTTTTGGTCAAAGGGAATGTCAATAGCACTATTCCTGGAGCATGAGgtaagagaggtccttaagattgcctcatccattctactcatagaatacac #### Pank1_ID6986_4 --> 1 - 2 Original Alignment tCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAag ggatcaatgaccccttgccttggtcccaacaatctctttgtttttccaagtCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGACAAGCTGGTAAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAaggtaagtatcatttgtttcgaggcaagcaaagaacgacacatagaggatcc Alignment from CESAR tCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAag ggatcaatgaccccttgccttggtcccaacaatctctttgtttttccaagtCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGACAAGCTGGTAAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAaggtaagtatcatttgtttcgaggcaagcaaagaacgacacatagaggatcc Alignment from Spaln_aa2Genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggatcaatgaccccttgccttggtcccaacaatctctttgtttttccaagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGACAAGCTGGTAAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtaagtatcatttgtttcgaggcaagcaaagaacgacacatagaggatcc Alignment from Spaln_nt2Genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggatcaatgaccccttgccttggtcccaacaatctctttgtttttccaagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGACAAGCTGGTAAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtaagtatcatttgtttcgaggcaagcaaagaacgacacatagaggatcc Alignment from Pairagon TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggatcaatgaccccttgccttggtcccaacaatctctttgtttttccaagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGACAAGCTGGTAAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtaagtatcatttgtttcgaggcaagcaaagaacgacacatagaggatcc Alignment from Exonerate_protein2genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggatcaatgaccccttgccttggtcccaacaatctctttgtttttccaagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGACAAGCTGGTAAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtaagtatcatttgtttcgaggcaagcaaagaacgacacatagaggatcc Alignment from Exonerate_coding2genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGCTTTGGCAACATGATGAGCAAAGAAAAGAGA ggatcaatgaccccttgccttggtcccaacaatctctttgtttttccaagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGACAAGCTGGTAAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGGTAAGTATCATTTGTTTCGAGGCAAGCAAAGaacgacacatagaggatcc Alignment from GeneWise TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggatcaatgaccccttgccttggtcccaacaatctctttgtttttccaagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGACAAGCTGGTAAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtaagtatcatttgtttcgaggcaagcaaagaacgacacatagaggatcc #### Pank1_ID6988_3 --> 0 - 2 Original Alignment ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCag ttgcacatggaatgatcaatcctgagtatatctcaatgttttccatttagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGTATACTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCaggtaagaaaagtaccaaccaagggagtaccatacctgattgcccttacatg Alignment from CESAR ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCag ttgcacatggaatgatcaatcctgagtatatctcaatgttttccatttagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGTATACTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCaggtaagaaaagtaccaaccaagggagtaccatacctgattgcccttacatg Alignment from Spaln_aa2Genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ttgcacatggaatgatcaatcctgagtatatctcaatgttttccatttagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGTATACTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtaagaaaagtaccaaccaagggagtaccatacctgattgcccttacatg Alignment from Spaln_nt2Genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ttgcacatggaatgatcaatcctgagtatatctcaatgttttccatttagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGTATACTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtaagaaaagtaccaaccaagggagtaccatacctgattgcccttacatg Alignment from Pairagon ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ttgcacatggaatgatcaatcctgagtatatctcaatgttttccatttagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGTATACTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtaagaaaagtaccaaccaagggagtaccatacctgattgcccttacatg Alignment from Exonerate_protein2genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ttgcacatggaatgatcaatcctgagtatatctcaatgttttccatttagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGTATACTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtaagaaaagtaccaaccaagggagtaccatacctgattgcccttacatg Alignment from Exonerate_coding2genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ttgcacatggaatgatcaatcctgagtatatctcaatgttttccatttagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGTATACTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtaagaaaagtaccaaccaagggagtaccatacctgattgcccttacatg Alignment from GeneWise ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ttgcacatggaatgatcaatcctgagtatatctcaatgttttccatttagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGTATACTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtaagaaaagtaccaaccaagggagtaccatacctgattgcccttacatg #### Papss2_ID6710_6 --> 0 - 0 Original Alignment AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taactcttcaaagacttactaaattaccacagcttgctcttcttcaccagAATATTGTGCCACATACCACTATCAAAATCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTGCCAATCACAAAAgtcagtgcatacagactgtacatatctgtcttgtaacgctccattacaga Alignment from CESAR AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taactcttcaaagacttactaaattaccacagcttgctcttcttcaccagAATATTGTGCCACATACCACTATCAAAATCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTGCCAATCACAAAAgtcagtgcatacagactgtacatatctgtcttgtaacgctccattacaga Alignment from Spaln_aa2Genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taactcttcaaagacttactaaattaccacagcttgctcttcttcaccagAATATTGTGCCACATACCACTATCAAAATCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTGCCAATCACAAAAgtcagtgcatacagactgtacatatctgtcttgtaacgctccattacaga Alignment from Spaln_nt2Genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taactcttcaaagacttactaaattaccacagcttgctcttcttcaccagAATATTGTGCCACATACCACTATCAAAATCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTGCCAATCACAAAAgtcagtgcatacagactgtacatatctgtcttgtaacgctccattacaga Alignment from Pairagon AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taactcttcaaagacttactaaattaccacagcttgctcttcttcaccagAATATTGTGCCACATACCACTATCAAAATCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTGCCAATCACAAAAgtcagtgcatacagactgtacatatctgtcttgtaacgctccattacaga Alignment from Exonerate_protein2genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taactcttcaaagacttactaaattaccacagcttgctcttcttcaccagAATATTGTGCCACATACCACTATCAAAATCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTGCCAATCACAAAAgtcagtgcatacagactgtacatatctgtcttgtaacgctccattacaga Alignment from Exonerate_coding2genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taactcttcaaagacttactaaattaccacagcttgctcttcttcaccagAATATTGTGCCACATACCACTATCAAAATCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTGCCAATCACAAAAgtcagtgcatacagactgtacatatctgtcttgtaacgctccattacaga Alignment from GeneWise AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taactcttcaaagacttactaaattaccacagcttgctcttcttcaccagAATATTGTGCCACATACCACTATCAAAATCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTGCCAATCACAAAAgtcagtgcatacagactgtacatatctgtcttgtaacgctccattacaga #### Papss2_ID6711_7 --> 0 - 1 Original Alignment CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACg gatgaatcttcttttcttcaatctccattgggttttctgtctgattgcagCTGGATCTACAGTGGGTGCAGATTCAGAGTGAAGGCTGGACCACCCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTACAAACTCTCCACTTTGATACACTACTGGATggtgagttgttatgttaacctgctagtcctaacagaataatttgtttgcta Alignment from CESAR CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACg gatgaatcttcttttcttcaatctccattgggttttctgtctgattgcagCTGGATCTACAGTGGGTGCAGATTCAGAGTGAAGGCTGGACCACCCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTACAAACTCTCCACTTTGATACACTACTGGATggtgagttgttatgttaacctgctagtcctaacagaataatttgtttgcta Alignment from Spaln_aa2Genome CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG gatgaatcttcttttcttcaatctccattgggttttctgtctgattgcagCTGGATCTACAGTGGGTGCAGATTCAGAGTGAAGGCTGGACCACCCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTACAAACTCTCCACTTTGATACACTACTGGATGgtgagttgttatgttaacctgctagtcctaacagaataatttgtttgcta Alignment from Spaln_nt2Genome CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG gatgaatcttcttttcttcaatctccattgggttttctgtctgattgcagCTGGATCTACAGTGGGTGCAGATTCAGAGTGAAGGCTGGACCACCCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTACAAACTCTCCACTTTGATACACTACTGGATGgtgagttgttatgttaacctgctagtcctaacagaataatttgtttgcta Alignment from Pairagon CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG gatgaatcttcttttcttcaatctccattgggttttctgtctgattgcagCTGGATCTACAGTGGGTGCAGATTCAGAGTGAAGGCTGGACCACCCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTACAAACTCTCCACTTTGATACACTACTGGATGgtgagttgttatgttaacctgctagtcctaacagaataatttgtttgcta Alignment from Exonerate_protein2genome CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG gatgaatcttcttttcttcaatctccattgggttttctgtctgattgcagCTGGATCTACAGTGGGTGCAGATTCAGAGTGAAGGCTGGACCACCCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTACAAACTCTCCACTTTGATACACTACTGGATGgtgagttgttatgttaacctgctagtcctaacagaataatttgtttgcta Alignment from Exonerate_coding2genome CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG gatgaatcttcttttcttcaatctccattgggttttctgtctgattgcagCTGGATCTACAGTGGGTGCAGATTCAGAGTGAAGGCTGGACCACCCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTACAAACTCTCCACTTTGATACACTACTGGATGgtgagttgttatgttaacctgctagtcctaacagaataatttgtttgcta Alignment from GeneWise CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG gatgaatcttcttttcttcaatctccattgggttttctgtctgattgcagCTGGATCTACAGTGGGTGCAGATTCAGAGTGAAGGCTGGACCACCCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTACAAACTCTCCACTTTGATACACTACTGGATGgtgagttgttatgttaacctgctagtcctaacagaataatttgtttgcta #### Patl1_ID3314_2 --> 0 - 1 Original Alignment TCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTg tcatattacatgatacatttgtagggtgctccccccaatcttaacaacagTCCTTGGAGGATTGTCCCCTGGATCAAGATGAAGCTGCATTTCAGGGACTGGGGGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTAGATCAGGTTCAGTGggtacacgtcaccctcaggttcagtgggtcttagtcacctcccattgaccc Alignment from CESAR TCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTg tcatattacatgatacatttgtagggtgctccccccaatcttaacaacagTCCTTGGAGGATTGTCCCCTGGATCAAGATGAAGCTGCATTTCAGGGACTGGGGGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTAGATCAGGTTCAGTGggtacacgtcaccctcaggttcagtgggtcttagtcacctcccattgaccc Alignment from Spaln_aa2Genome TCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG tcatattacatgatacatttgtagggtgctccccccaatcttaacaacagTCCTTGGAGGATTGTCCCCTGGATCAAGATGAAGCTGCATTTCAGGGACTGGGGGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTAGATCAGGTTCAGTGGgtacacgtcaccctcaggttcagtgggtcttagtcacctcccattgaccc Alignment from Spaln_nt2Genome TCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG tcatattacatgatacatttgtagggtgctccccccaatcttaacaacagTCCTTGGAGGATTGTCCCCTGGATCAAGATGAAGCTGCATTTCAGGGACTGGGGGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTAGATCAGGTTCAGTGGgtacacgtcaccctcaggttcagtgggtcttagtcacctcccattgaccc Alignment from Pairagon TCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG tcatattacatgatacatttgtagggtgctccccccaatcttaacaacagTCCTTGGAGGATTGTCCCCTGGATCAAGATGAAGCTGCATTTCAGGGACTGGGGGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTAGATCAGGTTCAGTGGgtacacgtcaccctcaggttcagtgggtcttagtcacctcccattgaccc Alignment from Exonerate_protein2genome GAGTCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG tcatattacatgatacatttgtagggtgctccccccaatcttaacaaCAGTCCTTGGAGGATTGTCCCCTGGATCAAGATGAAGCTGCATTTCAGGGACTGGGGGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTAGATCAGGTTCAGTGGgtacacgtcaccctcaggttcagtgggtcttagtcacctcccattgaccc Alignment from Exonerate_coding2genome tcatattacatgatacatttgtagggtgctccccccaatcttaacaacagtccttggaggattgtcccctggatcaagatgaagctgcatttcagggactgggggaagaagatgaagaaattgatcaatttaatgatgatacctttagatcaggttcagtgggtacacgtcaccctcaggttcagtgggtcttagtcacctcccattgaccc Alignment from GeneWise TTCCGCTACGAGTCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG tacatgatacatttgtagggtgctccccccaatcttaa------CAACAGTCCTTGGAGGATTGTCCCCTGGATCAAGATGAAGCTGCATTTCAGGGACTGGGGGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTAGATCAGGTTCAGTGGgtacacgtcaccctcaggttcagtgggtcttagtcacctcccattgaccc #### Patl1_ID3315_3 --> 2 - 0 Original Alignment atGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA acactgtcatcttgaaatcagaagccgttgttaacttgcctctccctcagatGATGATTGGCAGGAAACACATGAGCGCCTGGCAGAGTTGGAGGAGAAGCTGGCTGTGGCAGCTGATGAGCAAACAGGTAATGGAGAGAGAGATAAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCTGAGAGGCTCAGTAAATTACTGATTGATAATGGTCTAGAGGATCCTATTATCATGAGAGCAGTACAGACCAGACCAGTCTTACAAgtaagaattggacccactctaaccataatcgaatagtcatttatagtgga Alignment from CESAR atGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA acactgtcatcttgaaatcagaagccgttgttaacttgcctctccctcagatGATGATTGGCAGGAAACACATGAGCGCCTGGCAGAGTTGGAGGAGAAGCTGGCTGTGGCAGCTGATGAGCAAACAGGTAATGGAGAGAGAGATAAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCTGAGAGGCTCAGTAAATTACTGATTGATAATGGTCTAGAGGATCCTATTATCATGAGAGCAGTACAGACCAGACCAGTCTTACAAgtaagaattggacccactctaaccataatcgaatagtcatttatagtgga Alignment from Spaln_aa2Genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA acactgtcatcttgaaatcagaagccgttgttaacttgcctctccctcagATGATGATTGGCAGGAAACACATGAGCGCCTGGCAGAGTTGGAGGAGAAGCTGGCTGTGGCAGCTGATGAGCAAACAGGTAATGGAGAGAGAGATAAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCTGAGAGGCTCAGTAAATTACTGATTGATAATGGTCTAGAGGATCCTATTATCATGAGAGCAGTACAGACCAGACCAGTCTTACAAgtaagaattggacccactctaaccataatcgaatagtcatttatagtgga Alignment from Spaln_nt2Genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA acactgtcatcttgaaatcagaagccgttgttaacttgcctctccctcagATGATGATTGGCAGGAAACACATGAGCGCCTGGCAGAGTTGGAGGAGAAGCTGGCTGTGGCAGCTGATGAGCAAACAGGTAATGGAGAGAGAGATAAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCTGAGAGGCTCAGTAAATTACTGATTGATAATGGTCTAGAGGATCCTATTATCATGAGAGCAGTACAGACCAGACCAGTCTTACAAgtaagaattggacccactctaaccataatcgaatagtcatttatagtgga Alignment from Pairagon ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA acactgtcatcttgaaatcagaagccgttgttaacttgcctctccctcagATGATGATTGGCAGGAAACACATGAGCGCCTGGCAGAGTTGGAGGAGAAGCTGGCTGTGGCAGCTGATGAGCAAACAGGTAATGGAGAGAGAGATAAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCTGAGAGGCTCAGTAAATTACTGATTGATAATGGTCTAGAGGATCCTATTATCATGAGAGCAGTACAGACCAGACCAGTCTTACAAgtaagaattggacccactctaaccataatcgaatagtcatttatagtgga Alignment from Exonerate_protein2genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA acactgtcatcttgaaatcagaagccgttgttaacttgcctctccctcagATGATGATTGGCAGGAAACACATGAGCGCCTGGCAGAGTTGGAGGAGAAGCTGGCTGTGGCAGCTGATGAGCAAACAGGTAATGGAGAGAGAGATAAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCTGAGAGGCTCAGTAAATTACTGATTGATAATGGTCTAGAGGATCCTATTATCATGAGAGCAGTACAGACCAGACCAGTCTTACAAgtaagaattggacccactctaaccataatcgaatagtcatttatagtgga Alignment from Exonerate_coding2genome acactgtcatcttgaaatcagaagccgttgttaacttgcctctccctcagatgatgattggcaggaaacacatgagcgcctggcagagttggaggagaagctggctgtggcagctgatgagcaaacaggtaatggagagagagataagatggatttgttaggtgaccatgaggagaatctagctgagaggctcagtaaattactgattgataatggtctagaggatcctattatcatgagagcagtacagaccagaccagtcttacaagtaagaattggacccactctaaccataatcgaatagtcatttatagtgga Alignment from GeneWise ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA acactgtcatcttgaaatcagaagccgttgttaacttgcctctccctcagATGATGATTGGCAGGAAACACATGAGCGCCTGGCAGAGTTGGAGGAGAAGCTGGCTGTGGCAGCTGATGAGCAAACAGGTAATGGAGAGAGAGATAAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCTGAGAGGCTCAGTAAATTACTGATTGATAATGGTCTAGAGGATCCTATTATCATGAGAGCAGTACAGACCAGACCAGTCTTACAAgtaagaattggacccactctaaccataatcgaatagtcatttatagtgga #### Patl1_ID3326_11 --> 0 - 1 Original Alignment AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTg agaatcagcatgtgcctgttttgttatatacctttctcctttcatcaaagAATTACTTCCAAAAACTTGAGAAATTGTCAGCTGCTGAGGAAATCCAGGGAGATGGCCCTAAAAAAGAGTGTACCAAACTCATCACCCCGCAGGTGGCAAAACTGGCTCATGCTTTCCAGCCAggtaagcatgctaggaagtgtgagaacctagagaatgttgagagatggacc Alignment from CESAR AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTg agaatcagcatgtgcctgttttgttatatacctttctcctttcatcaaagAATTACTTCCAAAAACTTGAGAAATTGTCAGCTGCTGAGGAAATCCAGGGAGATGGCCCTAAAAAAGAGTGTACCAAACTCATCACCCCGCAGGTGGCAAAACTGGCTCATGCTTTCCAGCCAggtaagcatgctaggaagtgtgagaacctagagaatgttgagagatggacc Alignment from Spaln_aa2Genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaatcagcatgtgcctgttttgttatatacctttctcctttcatcaaagAATTACTTCCAAAAACTTGAGAAATTGTCAGCTGCTGAGGAAATCCAGGGAGATGGCCCTAAAAAAGAGTGTACCAAACTCATCACCCCGCAGGTGGCAAAACTGGCTCATGCTTTCCAGCCAGgtaagcatgctaggaagtgtgagaacctagagaatgttgagagatggacc Alignment from Spaln_nt2Genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaatcagcatgtgcctgttttgttatatacctttctcctttcatcaaagAATTACTTCCAAAAACTTGAGAAATTGTCAGCTGCTGAGGAAATCCAGGGAGATGGCCCTAAAAAAGAGTGTACCAAACTCATCACCCCGCAGGTGGCAAAACTGGCTCATGCTTTCCAGCCAGgtaagcatgctaggaagtgtgagaacctagagaatgttgagagatggacc Alignment from Pairagon AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaatcagcatgtgcctgttttgttatatacctttctcctttcatcaaagAATTACTTCCAAAAACTTGAGAAATTGTCAGCTGCTGAGGAAATCCAGGGAGATGGCCCTAAAAAAGAGTGTACCAAACTCATCACCCCGCAGGTGGCAAAACTGGCTCATGCTTTCCAGCCAGgtaagcatgctaggaagtgtgagaacctagagaatgttgagagatggacc Alignment from Exonerate_protein2genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaatcagcatgtgcctgttttgttatatacctttctcctttcatcaaagAATTACTTCCAAAAACTTGAGAAATTGTCAGCTGCTGAGGAAATCCAGGGAGATGGCCCTAAAAAAGAGTGTACCAAACTCATCACCCCGCAGGTGGCAAAACTGGCTCATGCTTTCCAGCCAGgtaagcatgctaggaagtgtgagaacctagagaatgttgagagatggacc Alignment from Exonerate_coding2genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaatcagcatgtgcctgttttgttatatacctttctcctttcatcaaagAATTACTTCCAAAAACTTGAGAAATTGTCAGCTGCTGAGGAAATCCAGGGAGATGGCCCTAAAAAAGAGTGTACCAAACTCATCACCCCGCAGGTGGCAAAACTGGCTCATGCTTTCCAGCCAGgtaagcatgctaggaagtgtgagaacctagagaatgttgagagatggacc Alignment from GeneWise AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaatcagcatgtgcctgttttgttatatacctttctcctttcatcaaagAATTACTTCCAAAAACTTGAGAAATTGTCAGCTGCTGAGGAAATCCAGGGAGATGGCCCTAAAAAAGAGTGTACCAAACTCATCACCCCGCAGGTGGCAAAACTGGCTCATGCTTTCCAGCCAGgtaagcatgctaggaagtgtgagaacctagagaatgttgagagatggacc #### Patl1_ID3331_16 --> 0 - 0 Original Alignment GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG attcagctgtcatgaaatgataacaatccctcatcacttggcttctatagGTGTTACCATGCTTACTGAGCCTCTTTTCACTCTTGTTATATCATCTCCCGCCGGCTACTGTGACCAGCCGTCTTCAACCAGTAATGAACTTGCCCCAGAGCACAAGTGCACCTGCACCATCAAACTGTTACCTCACTGGTGTGCTTCACAATCAGgttggtttgtcctgtttctctaaggcctgtcatggcagtttcaacattca Alignment from CESAR GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG attcagctgtcatgaaatgataacaatccctcatcacttggcttctatagGTGTTACCATGCTTACTGAGCCTCTTTTCACTCTTGTTATATCATCTCCCGCCGGCTACTGTGACCAGCCGTCTTCAACCAGTAATGAACTTGCCCCAGAGCACAAGTGCACCTGCACCATCAAACTGTTACCTCACTGGTGTGCTTCACAATCAGgttggtttgtcctgtttctctaaggcctgtcatggcagtttcaacattca Alignment from Spaln_aa2Genome GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG attcagctgtcatgaaatgataacaatccctcatcacttggcttctatagGTGTTACCATGCTTACTGAGCCTCTTTTCACTCTTGTTATATCATCTCCCGCCGGCTACTGTGACCAGCCGTCTTCAACCAGTAATGAACTTGCCCCAGAGCACAAGTGCACCTGCACCATCAAACTGTTACCTCACTGGTGTGCTTCACAATCAGgttggtttgtcctgtttctctaaggcctgtcatggcagtttcaacattca Alignment from Spaln_nt2Genome GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG attcagctgtcatgaaatgataacaatccctcatcacttggcttctatagGTGTTACCATGCTTACTGAGCCTCTTTTCACTCTTGTTATATCATCTCCCGCCGGCTACTGTGACCAGCCGTCTTCAACCAGTAATGAACTTGCCCCAGAGCACAAGTGCACCTGCACCATCAAACTGTTACCTCACTGGTGTGCTTCACAATCAGgttggtttgtcctgtttctctaaggcctgtcatggcagtttcaacattca Alignment from Pairagon GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG attcagctgtcatgaaatgataacaatccctcatcacttggcttctatagGTGTTACCATGCTTACTGAGCCTCTTTTCACTCTTGTTATATCATCTCCCGCCGGCTACTGTGACCAGCCGTCTTCAACCAGTAATGAACTTGCCCCAGAGCACAAGTGCACCTGCACCATCAAACTGTTACCTCACTGGTGTGCTTCACAATCAGgttggtttgtcctgtttctctaaggcctgtcatggcagtttcaacattca Alignment from Exonerate_protein2genome GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG attcagctgtcatgaaatgataacaatccctcatcacttggcttctatagGTGTTACCATGCTTACTGAGCCTCTTTTCACTCTTGTTATATCATCTCCCGCCGGCTACTGTGACCAGCCGTCTTCAACCAGTAATGAACTTGCCCCAGAGCACAAGTGCACCTGCACCATCAAACTGTTACCTCACTGGTGTGCTTCACAATCAGgttggtttgtcctgtttctctaaggcctgtcatggcagtttcaacattca Alignment from Exonerate_coding2genome GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG attcagctgtcatgaaatgataacaatccctcatcacttggcttctatagGTGTTACCATGCTTACTGAGCCTCTTTTCACTCTTGTTATATCATCTCCCGCCGGCTACTGTGACCAGCCGTCTTCAACCAGTAATGAACTTGCCCCAGAGCACAAGTGCACCTGCACCATCAAACTGTTACCTCACTGGTGTGCTTCACAATCAGgttggtttgtcctgtttctctaaggcctgtcatggcagtttcaacattca Alignment from GeneWise GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG attcagctgtcatgaaatgataacaatccctcatcacttggcttctatagGTGTTACCATGCTTACTGAGCCTCTTTTCACTCTTGTTATATCATCTCCCGCCGGCTACTGTGACCAGCCGTCTTCAACCAGTAATGAACTTGCCCCAGAGCACAAGTGCACCTGCACCATCAAACTGTTACCTCACTGGTGTGCTTCACAATCAGgttggtttgtcctgtttctctaaggcctgtcatggcagtttcaacattca #### Pax2_ID9136_2 --> 2 - 2 Original Alignment caGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCag tagcaactgtgtgctgttctttgagctttgtttatttcttcttatttcagcaGGGCATGGAGGTGTTAACCAGCTCAGGGGGGTATTTGTGAATGGCAGGCCCTTGCCTGATGTAGTGAGGCATCGCATTGTGGAGCTAGCCCACCAAGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGAGTCAGCCATGGCTGTGTCAGCAAAATTTTGGGCaggtaagtgcttatgggtaacatccctcataacgaaacttaaagttgaagcc Alignment from CESAR caGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCag tagcaactgtgtgctgttctttgagctttgtttatttcttcttatttcagcaGGGCATGGAGGTGTTAACCAGCTCAGGGGGGTATTTGTGAATGGCAGGCCCTTGCCTGATGTAGTGAGGCATCGCATTGTGGAGCTAGCCCACCAAGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGAGTCAGCCATGGCTGTGTCAGCAAAATTTTGGGCaggtaagtgcttatgggtaacatccctcataacgaaacttaaagttgaagcc Alignment from Spaln_aa2Genome CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tagcaactgtgtgctgttctttgagctttgtttatttcttcttatttcagCAGGGCATGGAGGTGTTAACCAGCTCAGGGGGGTATTTGTGAATGGCAGGCCCTTGCCTGATGTAGTGAGGCATCGCATTGTGGAGCTAGCCCACCAAGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGAGTCAGCCATGGCTGTGTCAGCAAAATTTTGGGCAGgtaagtgcttatgggtaacatccctcataacgaaacttaaagttgaagcc Alignment from Spaln_nt2Genome CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tagcaactgtgtgctgttctttgagctttgtttatttcttcttatttcagCAGGGCATGGAGGTGTTAACCAGCTCAGGGGGGTATTTGTGAATGGCAGGCCCTTGCCTGATGTAGTGAGGCATCGCATTGTGGAGCTAGCCCACCAAGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGAGTCAGCCATGGCTGTGTCAGCAAAATTTTGGGCAGgtaagtgcttatgggtaacatccctcataacgaaacttaaagttgaagcc Alignment from Pairagon CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tagcaactgtgtgctgttctttgagctttgtttatttcttcttatttcagCAGGGCATGGAGGTGTTAACCAGCTCAGGGGGGTATTTGTGAATGGCAGGCCCTTGCCTGATGTAGTGAGGCATCGCATTGTGGAGCTAGCCCACCAAGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGAGTCAGCCATGGCTGTGTCAGCAAAATTTTGGGCAGgtaagtgcttatgggtaacatccctcataacgaaacttaaagttgaagcc Alignment from Exonerate_protein2genome CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tagcaactgtgtgctgttctttgagctttgtttatttcttcttatttcagCAGGGCATGGAGGTGTTAACCAGCTCAGGGGGGTATTTGTGAATGGCAGGCCCTTGCCTGATGTAGTGAGGCATCGCATTGTGGAGCTAGCCCACCAAGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGAGTCAGCCATGGCTGTGTCAGCAAAATTTTGGGCAGgtaagtgcttatgggtaacatccctcataacgaaacttaaagttgaagcc Alignment from Exonerate_coding2genome TTCTCCGCGATGCACCCAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tagcaactgtgtgctgttctttgagctttgtttaTTTCTTCTTATTTCAGCAGGGCATGGAGGTGTTAACCAGCTCAGGGGGGTATTTGTGAATGGCAGGCCCTTGCCTGATGTAGTGAGGCATCGCATTGTGGAGCTAGCCCACCAAGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGAGTCAGCCATGGCTGTGTCAGCAAAATTTTGGGCAGgtaagtgcttatgggtaacatccctcataacgaaacttaaagttgaagcc Alignment from GeneWise CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tagcaactgtgtgctgttctttgagctttgtttatttcttcttatttcagCAGGGCATGGAGGTGTTAACCAGCTCAGGGGGGTATTTGTGAATGGCAGGCCCTTGCCTGATGTAGTGAGGCATCGCATTGTGGAGCTAGCCCACCAAGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGAGTCAGCCATGGCTGTGTCAGCAAAATTTTGGGCAGgtaagtgcttatgggtaacatccctcataacgaaacttaaagttgaagcc #### Pcgf5_ID7128_4 --> 2 - 1 Original Alignment aaGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAg tattgcatgtaattactgtattcaactttatgtttttaatgttaatacagaaGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACGAACCTCAGGAAAATGGGCAAggtgagttctatttatcctgcagcatcagcaggtcctgatcaagctggaaa Alignment from CESAR aaGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAg tattgcatgtaattactgtattcaactttatgtttttaatgttaatacagaaGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACGAACCTCAGGAAAATGGGCAAggtgagttctatttatcctgcagcatcagcaggtcctgatcaagctggaaa Alignment from Spaln_aa2Genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattgcatgtaattactgtattcaactttatgtttttaatgttaatacagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACGAACCTCAGGAAAATGGGCAAGgtgagttctatttatcctgcagcatcagcaggtcctgatcaagctggaaa Alignment from Spaln_nt2Genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattgcatgtaattactgtattcaactttatgtttttaatgttaatacagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACGAACCTCAGGAAAATGGGCAAGgtgagttctatttatcctgcagcatcagcaggtcctgatcaagctggaaa Alignment from Pairagon AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattgcatgtaattactgtattcaactttatgtttttaatgttaatacagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACGAACCTCAGGAAAATGGGCAAGgtgagttctatttatcctgcagcatcagcaggtcctgatcaagctggaaa Alignment from Exonerate_protein2genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattgcatgtaattactgtattcaactttatgtttttaatgttaatacagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACGAACCTCAGGAAAATGGGCAAGgtgagttctatttatcctgcagcatcagcaggtcctgatcaagctggaaa Alignment from Exonerate_coding2genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattgcatgtaattactgtattcaactttatgtttttaatgttaatacagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACGAACCTCAGGAAAATGGGCAAGgtgagttctatttatcctgcagcatcagcaggtcctgatcaagctggaaa Alignment from GeneWise AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattgcatgtaattactgtattcaactttatgtttttaatgttaatacagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACGAACCTCAGGAAAATGGGCAAGgtgagttctatttatcctgcagcatcagcaggtcctgatcaagctggaaa #### Pcgf6_ID10080_7 --> 1 - 0 Original Alignment tGCTAATGAAGACACCGGACATTTTAAG cccatcactatacacataaataaagataggtgtgttctcttacattacagtGCAAATCAAGACACTGGACAT---AAGgttcgttattgcttcaatctccaggaaaaattagtccacagtctacatag Alignment from CESAR tGCTAATGAAGACACCGGACATTTTAAG cccatcactatacacataaataaagataggtgtgttctcttacattacagtGCAAATCAAGACACTGGACAT---AAGgttcgttattgcttcaatctccaggaaaaattagtccacagtctacatag Alignment from Spaln_aa2Genome TGCTAATGAAGACACCGGACATTTTAAG cccatcactatacacataaataaagataggtgtgttctcttacattacagTGCAAATCAAGACACTGGACAT---AAGgttcgttattgcttcaatctccaggaaaaattagtccacagtctacatag Alignment from Spaln_nt2Genome TGCTAATGAAGACACCGGACATTTTAAG cccatcactatacacataaataaagataggtgtgttctcttacattacagTGCAAATCAAGACACTGGACA---TAAGgttcgttattgcttcaatctccaggaaaaattagtccacagtctacatag Alignment from Pairagon TGCTAATGAAGACACCGGACATTTTAAG cccatcactatacacataaataaagataggtgtgttctcttacattacagTGCAAATCAAGACACTGGACA---TAAGgttcgttattgcttcaatctccaggaaaaattagtccacagtctacatag Alignment from Exonerate_protein2genome TGCTAATGAAGACACCGGACATTTT cccatcactatacacataaataaagataggtgtgttctcttacattacagTGCAAATCAAGACACTGGACATAAGgttcgttattgcttcaatctccaggaaaaattagtccacagtctacatag Alignment from Exonerate_coding2genome cccatcactatacacataaataaagataggtgtgttctcttacattacagtgcaaatcaagacactggacataaggttcgttattgcttcaatctccaggaaaaattagtccacagtctacatag Alignment from GeneWise TGCTAATGAAGACACCGGACATTTTAAG cccatcactatacacataaataaagataggtgtgttctcttacattacagTGCAAATCAAGACACTGGACAT---AAGgttcgttattgcttcaatctccaggaaaaattagtccacagtctacatag #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtctcctttaccttgtaccaccttcactcattctgtttccagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATTGCC---AATGAGGAGCGGCTTGTGATTTCACATGAGAGAGATCCTGCCTGGAGGAGTGCCGTCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGATATGGATGACGCCTCTGGTGAGTATAAGATCATCATGCTCAATGGGCGCCACCTCAGTTTCCGAGTCATAAAGgtagctcaaacttaatgatgaatagcaacctaagatgtactaatgtctcc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtctcctttaccttgtaccaccttcactcattctgtttccagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATT---GCCAATGAGGAGCGGCTTGTGATTTCACATGAGAGAGATCCTGCCTGGAGGAGTGCCGTCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGATATGGATGACGCCTCTGGTGAGTATAAGATCATCATGCTCAATGGGCGCCACCTCAGTTTCCGAGTCATAAAGgtagctcaaacttaatgatgaatagcaacctaagatgtactaatgtctcc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtctcctttaccttgtaccaccttcactcattctgtttccagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATT---GCCAATGAGGAGCGGCTTGTGATTTCACATGAGAGAGATCCTGCCTGGAGGAGTGCCGTCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGATATGGATGACGCCTCTGGTGAGTATAAGATCATCATGCTCAATGGGCGCCACCTCAGTTTCCGAGTCATAAAGgtagctcaaacttaatgatgaatagcaacctaagatgtactaatgtctcc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtctcctttaccttgtaccaccttcactcattctgtttccagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAAT---TGCCAATGAGGAGCGGCTTGTGATTTCACATGAGAGAGATCCTGCCTGGAGGAGTGCCGTCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGATATGGATGACGCCTCTGGTGAGTATAAGATCATCATGCTCAATGGGCGCCACCTCAGTTTCCGAGTCATAAAGgtagctcaaacttaatgatgaatagcaacctaagatgtactaatgtctcc Alignment from Pairagon ----------------------------------------------CCAGGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG GAGCAGGTGTCTCCTTTACCTTGTACCACCTTCACTCATTCTGTTTCCAGGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATT---GCCAATGAGGAGCGGCTTGTGATTTCACATGAGAGAGATCCTGCCTGGAGGAGTGCCGTCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGATATGGATGACGCCTCTGGTGAGTATAAGATCATCATGCTCAATGGGCGCCACCTCAGTTTCCGAGTCATAAAGgtagctcaaacttaatgatgaatagcaacctaagatgtactaatgtctcc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtctcctttaccttgtaccaccttcactcattctgtttccagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATT---GCCAATGAGGAGCGGCTTGTGATTTCACATGAGAGAGATCCTGCCTGGAGGAGTGCCGTCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGATATGGATGACGCCTCTGGTGAGTATAAGATCATCATGCTCAATGGGCGCCACCTCAGTTTCCGAGTCATAAAGgtagctcaaacttaatgatgaatagcaacctaagatgtactaatgtctcc Alignment from Exonerate_coding2genome gagcaggtgtctcctttaccttgtaccaccttcactcattctgtttccagggccatttcacatcacctgatgagtatgaggaactagcagccctatatgacacaattgccaatgaggagcggcttgtgatttcacatgagagagatcctgcctggaggagtgccgtcctcggtaacaccccctctctcctcttactccgccatgatatggatgacgcctctggtgagtataagatcatcatgctcaatgggcgccacctcagtttccgagtcataaaggtagctcaaacttaatgatgaatagcaacctaagatgtactaatgtctcc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagcaggtgtctcctttaccttgtaccaccttcactcattctgtttccagGGCCATTTCACATCACCTGATGAGTATGAGGAACTAGCAGCCCTATATGACACAATTGCC---AATGAGGAGCGGCTTGTGATTTCACATGAGAGAGATCCTGCCTGGAGGAGTGCCGTCCTCGGTAACACCCCCTCTCTCCTCTTACTCCGCCATGATATGGATGACGCCTCTGGTGAGTATAAGATCATCATGCTCAATGGGCGCCACCTCAGTTTCCGAGTCATAAAGgtagctcaaacttaatgatgaatagcaacctaagatgtactaatgtctcc #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCaggtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCaggtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from Exonerate_coding2genome gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagcctgtggaacaggattggaattcaccattggttacatcatgctttggcttgtgtgtgttgggtcgccgggctctgggcacagcagcacacagcatgtcagccaggtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG gggatgttgtcctgggctcttttagtaatcctgctttttttaaatttaagCCTGTGGAACAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcacacagctaaagaagacccaacaacccattgctagact #### Pcnxl3_ID1166_27 --> 2 - 0 Original Alignment gcACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gatccgacactgctctggccccccaccataaacatggcttttggttttaggcACATACTGTCAGCAGCATGAAGTAGAGGCAATTACTGAGGGTGTTGAGGAGGATGAAGGCTGCTGTTGCTGTGAGCCTGGGCACCTGCCACGTGTCCTCTCCTTTAATGCTGCCTATGGGCAGCGGTGGCTGGCATGGGAGGTGACAGCGACCAAGTATGTGCTAGAAGGCTACAGAATCAGTGACAACAATGCAGCCTCAATGCTGCAGGTTTTTGACCTACGCAAGCTACTTGTCACCTACTATCTTAAGgtaagtccatagcaggtttagttgaatgagtagcatccatgtctcactaa Alignment from CESAR gcACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gatccgacactgctctggccccccaccataaacatggcttttggttttaggcACATACTGTCAGCAGCATGAAGTAGAGGCAATTACTGAGGGTGTTGAGGAGGATGAAGGCTGCTGTTGCTGTGAGCCTGGGCACCTGCCACGTGTCCTCTCCTTTAATGCTGCCTATGGGCAGCGGTGGCTGGCATGGGAGGTGACAGCGACCAAGTATGTGCTAGAAGGCTACAGAATCAGTGACAACAATGCAGCCTCAATGCTGCAGGTTTTTGACCTACGCAAGCTACTTGTCACCTACTATCTTAAGgtaagtccatagcaggtttagttgaatgagtagcatccatgtctcactaa Alignment from Spaln_aa2Genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gatccgacactgctctggccccccaccataaacatggcttttggttttagGCACATACTGTCAGCAGCATGAAGTAGAGGCAATTACTGAGGGTGTTGAGGAGGATGAAGGCTGCTGTTGCTGTGAGCCTGGGCACCTGCCACGTGTCCTCTCCTTTAATGCTGCCTATGGGCAGCGGTGGCTGGCATGGGAGGTGACAGCGACCAAGTATGTGCTAGAAGGCTACAGAATCAGTGACAACAATGCAGCCTCAATGCTGCAGGTTTTTGACCTACGCAAGCTACTTGTCACCTACTATCTTAAGgtaagtccatagcaggtttagttgaatgagtagcatccatgtctcactaa Alignment from Spaln_nt2Genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gatccgacactgctctggccccccaccataaacatggcttttggttttagGCACATACTGTCAGCAGCATGAAGTAGAGGCAATTACTGAGGGTGTTGAGGAGGATGAAGGCTGCTGTTGCTGTGAGCCTGGGCACCTGCCACGTGTCCTCTCCTTTAATGCTGCCTATGGGCAGCGGTGGCTGGCATGGGAGGTGACAGCGACCAAGTATGTGCTAGAAGGCTACAGAATCAGTGACAACAATGCAGCCTCAATGCTGCAGGTTTTTGACCTACGCAAGCTACTTGTCACCTACTATCTTAAGgtaagtccatagcaggtttagttgaatgagtagcatccatgtctcactaa Alignment from Pairagon GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gatccgacactgctctggccccccaccataaacatggcttttggttttagGCACATACTGTCAGCAGCATGAAGTAGAGGCAATTACTGAGGGTGTTGAGGAGGATGAAGGCTGCTGTTGCTGTGAGCCTGGGCACCTGCCACGTGTCCTCTCCTTTAATGCTGCCTATGGGCAGCGGTGGCTGGCATGGGAGGTGACAGCGACCAAGTATGTGCTAGAAGGCTACAGAATCAGTGACAACAATGCAGCCTCAATGCTGCAGGTTTTTGACCTACGCAAGCTACTTGTCACCTACTATCTTAAGgtaagtccatagcaggtttagttgaatgagtagcatccatgtctcactaa Alignment from Exonerate_protein2genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gatccgacactgctctggccccccaccataaacatggcttttggttttagGCACATACTGTCAGCAGCATGAAGTAGAGGCAATTACTGAGGGTGTTGAGGAGGATGAAGGCTGCTGTTGCTGTGAGCCTGGGCACCTGCCACGTGTCCTCTCCTTTAATGCTGCCTATGGGCAGCGGTGGCTGGCATGGGAGGTGACAGCGACCAAGTATGTGCTAGAAGGCTACAGAATCAGTGACAACAATGCAGCCTCAATGCTGCAGGTTTTTGACCTACGCAAGCTACTTGTCACCTACTATCTTAAGgtaagtccatagcaggtttagttgaatgagtagcatccatgtctcactaa Alignment from Exonerate_coding2genome gatccgacactgctctggccccccaccataaacatggcttttggttttaggcacatactgtcagcagcatgaagtagaggcaattactgagggtgttgaggaggatgaaggctgctgttgctgtgagcctgggcacctgccacgtgtcctctcctttaatgctgcctatgggcagcggtggctggcatgggaggtgacagcgaccaagtatgtgctagaaggctacagaatcagtgacaacaatgcagcctcaatgctgcaggtttttgacctacgcaagctacttgtcacctactatcttaaggtaagtccatagcaggtttagttgaatgagtagcatccatgtctcactaa Alignment from GeneWise GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gatccgacactgctctggccccccaccataaacatggcttttggttttagGCACATACTGTCAGCAGCATGAAGTAGAGGCAATTACTGAGGGTGTTGAGGAGGATGAAGGCTGCTGTTGCTGTGAGCCTGGGCACCTGCCACGTGTCCTCTCCTTTAATGCTGCCTATGGGCAGCGGTGGCTGGCATGGGAGGTGACAGCGACCAAGTATGTGCTAGAAGGCTACAGAATCAGTGACAACAATGCAGCCTCAATGCTGCAGGTTTTTGACCTACGCAAGCTACTTGTCACCTACTATCTTAAGgtaagtccatagcaggtttagttgaatgagtagcatccatgtctcactaa #### Pcnxl3_ID1170_23 --> 0 - 1 Original Alignment CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAc tgtttgtacctggacttaggcatacgtttgaagatgattttctgttgcagCTATGGGACCTTCTATATAAGCTGCGTTTTGTATTGACATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCAcgtatgaagctgttctagcttcactgtctggccaaagatgtgaagaacatt Alignment from CESAR CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAc tgtttgtacctggacttaggcatacgtttgaagatgattttctgttgcagCTATGGGACCTTCTATATAAGCTGCGTTTTGTATTGACATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCAcgtatgaagctgttctagcttcactgtctggccaaagatgtgaagaactct Alignment from Spaln_aa2Genome CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAC tgtttgtacctggacttaggcatacgtttgaagatgattttctgttgcagCTATGGGACCTTCTATATAAGCTGCGTTTTGTATTGACATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACgtatgaagctgttctagcttcactgtctggccaaagatgtgaagaacatt Alignment from Spaln_nt2Genome CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAC tgtttgtacctggacttaggcatacgtttgaagatgattttctgttgcagCTATGGGACCTTCTATATAAGCTGCGTTTTGTATTGACATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACgtatgaagctgttctagcttcactgtctggccaaagatgtgaagaacatt Alignment from Pairagon CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAC tgtttgtacctggacttaggcatacgtttgaagatgattttctgttgcagCTATGGGACCTTCTATATAAGCTGCGTTTTGTATTGACATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACgtatgaagctgttctagcttcactgtctggccaaagatgtgaagaacatt Alignment from Exonerate_protein2genome CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAC tgtttgtacctggacttaggcatacgtttgaagatgattttctgttgcagCTATGGGACCTTCTATATAAGCTGCGTTTTGTATTGACATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACgtatgaagctgttctagcttcactgtctggccaaagatgtgaagaacatt Alignment from Exonerate_coding2genome tgtttgtacctggacttaggcatacgtttgaagatgattttctgttgcagctatgggaccttctatataagctgcgttttgtattgacatacattgcaccatggcagattacctggggttcagccttccatgcttttgcccagccgtttgcagtaccacgtatgaagctgttctagcttcactgtctggccaaagatgtgaagaacatt Alignment from GeneWise CTTTGGGACCTGCTGTACAAGCTGCGTTTTGTACTGACCTACATTGCACCATGGCAGATCACCTGGGGCTCAGCCTTCCATGCCTTTGCCCAGCCCTTCGCTGTACCAC tgtttgtacctggacttaggcatacgtttgaagatgattttctgttgcagCTATGGGACCTTCTATATAAGCTGCGTTTTGTATTGACATACATTGCACCATGGCAGATTACCTGGGGTTCAGCCTTCCATGCTTTTGCCCAGCCGTTTGCAGTACCACgtatgaagctgttctagcttcactgtctggccaaagatgtgaagaacatt #### Pcnxl3_ID1181_12 --> 1 - 0 Original Alignment gACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctctagacattctaggaagctcagtaatcattttccttctctgctcaggACACGTGGTCTAGTAATGGAGAATATTTTTGGTGTAGGGGTGACTACTCTACTTGCCATCCTTGGGTATCTATTGCTCCTAAAGGGGTTCATCACGGAAATT---ATCTTTCAGTTTTGTCTGGCCATTGCTTCTTGTCAGTATTTTCTACTCAAAgtgagaacttggttctcagttatagatcagtagcgtgcttgctaacaggt Alignment from CESAR gACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctctagacattctaggaagctcagtaatcattttccttctctgctcaggACACGTGGTCTAGTAATGGAGAATATTTTTGGTGTAGGGGTGACTACTCTACTTGCCATCCTTGGGTATCTATTGCTCCTAAAGGGGTTCATCACGGAAATT---ATCTTTCAGTTTTGTCTGGCCATTGCTTCTTGTCAGTATTTTCTACTCAAAgtgagaacttggttctcagttatagatcagtagcgtgcttgctaacaggt Alignment from Spaln_aa2Genome GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctctagacattctaggaagctcagtaatcattttccttctctgctcagGACACGTGGTCTAGTAATGGAGAATATTTTTGGTGTAGGGGTGACTACTCTACTTGCCATCCTTGGGTATCTATTGCTCCTAAAGGGGTTCATCACGGAAATT---ATCTTTCAGTTTTGTCTGGCCATTGCTTCTTGTCAGTATTTTCTACTCAAAgtgagaacttggttctcagttatagatcagtagcgtgcttgctaacaggt Alignment from Spaln_nt2Genome GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctctagacattctaggaagctcagtaatcattttccttctctgctcagGACACGTGGTCTAGTAATGGAGAATATTTTTGGTGTAGGGGTGACTACTCTACTTGCCATCCTTGGGTATCTATTGCTCCTAAAGGGGTTCATCACGGAAAT---TATCTTTCAGTTTTGTCTGGCCATTGCTTCTTGTCAGTATTTTCTACTCAAAgtgagaacttggttctcagttatagatcagtagcgtgcttgctaacaggt Alignment from Pairagon GACACGTGG---GGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctctagacattctaggaagctcagtaatcattttccttctctgctcagGACACGTGGTCTAGTAATGGAGAATATTTTTGGTGTAGGGGTGACTACTCTACTTGCCATCCTTGGGTATCTATTGCTCCTAAAGGGGTTCATCACGGAAATT---ATCTTTCAGTTTTGTCTGGCCATTGCTTCTTGTCAGTATTTTCTACTCAAAgtgagaacttggttctcagttatagatcagtagcgtgcttgctaacaggt Alignment from Exonerate_protein2genome GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctctagacattctaggaagctcagtaatcattttccttctctgctcagGACACGTGGTCTAGTAATGGAGAATATTTTTGGTGTAGGGGTGACTACTCTACTTGCCATCCTTGGGTATCTATTGCTCCTAAAGGGGTTCATCACGGAAATT---ATCTTTCAGTTTTGTCTGGCCATTGCTTCTTGTCAGTATTTTCTACTCAAAgtgagaacttggttctcagttatagatcagtagcgtgcttgctaacaggt Alignment from Exonerate_coding2genome ttctctagacattctaggaagctcagtaatcattttccttctctgctcaggacacgtggtctagtaatggagaatatttttggtgtaggggtgactactctacttgccatccttgggtatctattgctcctaaaggggttcatcacggaaattatctttcagttttgtctggccattgcttcttgtcagtattttctactcaaagtgagaacttggttctcagttatagatcagtagcgtgcttgctaacaggt Alignment from GeneWise GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ttctctagacattctaggaagctcagtaatcattttccttctctgctcagGACACGTGGTCTAGTAATGGAGAATATTTTTGGTGTAGGGGTGACTACTCTACTTGCCATCCTTGGGTATCTATTGCTCCTAAAGGGGTTCATCACGGAAATT---ATCTTTCAGTTTTGTCTGGCCATTGCTTCTTGTCAGTATTTTCTACTCAAAgtgagaacttggttctcagttatagatcagtagcgtgcttgctaacaggt #### Pcnxl3_ID1187_6 --> 2 - 1 Original Alignment ttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAg aaaattccctctgaattctatgccactgtcctcgttcctccctcatgcagttGGAGATCTTCCCCAGACACCACCAGGTGTTGTCCCAGATCCCGCTCTTCCTAGTACTGATTCTTCTGGACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGGGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGTGTCAGCCAAGAGCTAAGCAAGACTTTTCTCACCCTTACACAGCCTGACCAGGCACTAGTAAGAACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCCCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTGAGTTGCTTTAAAAGTAAGAAGACCAACTCTACACACCTTGACAGTCCACCCGGTGGATATGCCCCCCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTACCTTCAGTAGATGCACTTCATTCATTTGACACTATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCGCTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCCAGTAAGCGGCAGCCCCCC---CGAGAGCATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGGTCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGTGGTGAATTGACCCCAGCATCCAGTTTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAGAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCACCACATGGAACCAAAGAGGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACAAAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGAAGTTCTACGGGCACTCGTTGCTGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGACGGGGACCTGCCACGAACCAGCCTGGCTGGCGGGGTGAATTGCAAGAGCAAGGAGCTGTAGGAGGGggtaatggtcatgattgtttaatggggtgtgttaccaagggtcacttgtag Alignment from CESAR ttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCTCCC---GAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAg aaaattccctctgaattctatgccactgtcctcgttcctccctcatgcagttGGAGATCTTCCCCAGACACCACCAGGTGTTGTCCCAGATCCCGCTCTTCCTAGTACTGATTCTTCTGGACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGGGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGTGTCAGCCAAGAGCTAAGCAAGACTTTTCTCACCCTTACACAGCCTGACCAGGCACTAGTAAGAACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCCCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTGAGTTGCTTTAAAAGTAAGAAGACCAACTCTACACACCTTGACAGTCCACCCGGTGGATATGCCCCCCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTACCTTCAGTAGATGCACTTCATTCATTTGACACTATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCGCTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCCAGTAAGCGGCAGCCCCCC---CGAGAGCATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGGTCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGTGGTGAATTGACCCCAGCATCCAGTTTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAGAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCACCACATGGAACCAAAGAGGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACAAAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGAAGTTCTACGGGCACTCGTTGCTGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGACGGGGACCTGCCACGAACCAGCCTGGCTGGCGGGGTGAATTGCAAGAGCAAGGAGCTGTAGGAGGGggtaatggtcatgattgtttaatggggtgtgttaccaagggtcacttgtag Alignment from Spaln_aa2Genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG aaaattccctctgaattctatgccactgtcctcgttcctccctcatgcagTTGGAGATCTTCCCCAGACACCACCAGGTGTTGTCCCAGATCCCGCTCTTCCTAGTACTGATTCTTCTGGACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGGGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGTGTCAGCCAAGAGCTAAGCAAGACTTTTCTCACCCTTACACAGCCTGACCAGGCACTAGTAAGAACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCCCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTGAGTTGCTTTAAAAGTAAGAAGACCAACTCTACACACCTTGACAGTCCACCCGGTGGATATGCCCCCCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTACCTTCAGTAGATGCACTTCATTCATTTGACACTATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCGCTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCCAGTAAGCGGCAGCCCCCC---CGAGAGCATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGGTCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGTGGTGAATTGACCCCAGCATCCAGTTTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAGAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCACCACATGGAACCAAAGAGGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACAAAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGAAGTTCTACGGGCACTCGTTGCTGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGACGGGGACCTGCCACGAACCAGCCTGGCTGGCGGGGTGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaatggtcatgattgtttaatggggtgtgttaccaagggtcacttgtag Alignment from Spaln_nt2Genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCTCCC---GAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG aaaattccctctgaattctatgccactgtcctcgttcctccctcatgcagTTGGAGATCTTCCCCAGACACCACCAGGTGTTGTCCCAGATCCCGCTCTTCCTAGTACTGATTCTTCTGGACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGGGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGTGTCAGCCAAGAGCTAAGCAAGACTTTTCTCACCCTTACACAGCCTGACCAGGCACTAGTAAGAACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCCCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTGAGTTGCTTTAAAAGTAAGAAGACCAACTCTACACACCTTGACAGTCCACCCGGTGGATATGCCCCCCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTACCTTCAGTAGATGCACTTCATTCATTTGACACTATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCGCTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCCAGTAAGCGGCAGCCCCCC---CGAGAGCATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGGTCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGTGGTGAATTGACCCCAGCATCCAGTTTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAGAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCACCACATGGAACCAAAGAGGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACAAAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGAAGTTCTACGGGCACTCGTTGCTGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGACGGGGACCTGCCACGAACCAGCCTGGCTGGCGGGGTGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaatggtcatgattgtttaatggggtgtgttaccaagggtcacttgtag Alignment from Pairagon TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCTCCC---GAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG aaaattccctctgaattctatgccactgtcctcgttcctccctcatgcagTTGGAGATCTTCCCCAGACACCACCAGGTGTTGTCCCAGATCCCGCTCTTCCTAGTACTGATTCTTCTGGACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGGGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGTGTCAGCCAAGAGCTAAGCAAGACTTTTCTCACCCTTACACAGCCTGACCAGGCACTAGTAAGAACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCCCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTGAGTTGCTTTAAAAGTAAGAAGACCAACTCTACACACCTTGACAGTCCACCCGGTGGATATGCCCCCCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTACCTTCAGTAGATGCACTTCATTCATTTGACACTATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCGCTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCCAGTAAGCGGCAGCCCCCC---CGAGAGCATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGGTCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGTGGTGAATTGACCCCAGCATCCAGTTTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAGAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCACCACATGGAACCAAAGAGGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACAAAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGAAGTTCTACGGGCACTCGTTGCTGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGACGGGGACCTGCCACGAACCAGCCTGGCTGGCGGGGTGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaatggtcatgattgtttaatggggtgtgttaccaagggtcacttgtag Alignment from Exonerate_protein2genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG aaaattccctctgaattctatgccactgtcctcgttcctccctcatgcagTTGGAGATCTTCCCCAGACACCACCAGGTGTTGTCCCAGATCCCGCTCTTCCTAGTACTGATTCTTCTGGACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGGGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGTGTCAGCCAAGAGCTAAGCAAGACTTTTCTCACCCTTACACAGCCTGACCAGGCACTAGTAAGAACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCCCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTGAGTTGCTTTAAAAGTAAGAAGACCAACTCTACACACCTTGACAGTCCACCCGGTGGATATGCCCCCCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTACCTTCAGTAGATGCACTTCATTCATTTGACACTATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCGCTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCCAGTAAGCGGCAGCCCCCC---CGAGAGCATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGGTCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGTGGTGAATTGACCCCAGCATCCAGTTTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAGAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCACCACATGGAACCAAAGAGGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACAAAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGAAGTTCTACGGGCACTCGTTGCTGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGACGGGGACCTGCCACGAACCAGCCTGGCTGGCGGGGTGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaatggtcatgattgtttaatggggtgtgttaccaagggtcacttgtag Alignment from Exonerate_coding2genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG aaaattccctctgaattctatgccactgtcctcgttcctccctcatgcagTTGGAGATCTTCCCCAGACACCACCAGGTGTTGTCCCAGATCCCGCTCTTCCTAGTACTGATTCTTCTGGACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGGGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGTGTCAGCCAAGAGCTAAGCAAGACTTTTCTCACCCTTACACAGCCTGACCAGGCACTAGTAAGAACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCCCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTGAGTTGCTTTAAAAGTAAGAAGACCAACTCTACACACCTTGACAGTCCACCCGGTGGATATGCCCCCCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTACCTTCAGTAGATGCACTTCATTCATTTGACACTATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCGCTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCCAGTAAGCGGCAGCCCCCC---CGAGAGCATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGGTCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGTGGTGAATTGACCCCAGCATCCAGTTTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAGAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCACCACATGGAACCAAAGAGGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACAAAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGAAGTTCTACGGGCACTCGTTGCTGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGACGGGGACCTGCCACGAACCAGCCTGGCTGGCGGGGTGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaatggtcatgattgtttaatggggtgtgttaccaagggtcacttgtag Alignment from GeneWise TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCTCCC---GAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG aaaattccctctgaattctatgccactgtcctcgttcctccctcatgcagTTGGAGATCTTCCCCAGACACCACCAGGTGTTGTCCCAGATCCCGCTCTTCCTAGTACTGATTCTTCTGGACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGGGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGTGTCAGCCAAGAGCTAAGCAAGACTTTTCTCACCCTTACACAGCCTGACCAGGCACTAGTAAGAACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCCCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTGAGTTGCTTTAAAAGTAAGAAGACCAACTCTACACACCTTGACAGTCCACCCGGTGGATATGCCCCCCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTACCTTCAGTAGATGCACTTCATTCATTTGACACTATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCGCTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCCAGTAAGCGGCAGCCCCCC---CGAGAGCATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGGTCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGTGGTGAATTGACCCCAGCATCCAGTTTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAGAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCACCACATGGAACCAAAGAGGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACAAAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGAAGTTCTACGGGCACTCGTTGCTGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGACGGGGACCTGCCACGAACCAGCCTGGCTGGCGGGGTGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaatggtcatgattgtttaatggggtgtgttaccaagggtcacttgtag #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aaagaagatgatcgcatggttagtgatcgtgtacattttttcttttctaggGATCCTGGT---GAAACCAGAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTGCACTTCACTTTCCAGCGCTCTGAAGTAGAATTTAACCATGTGTCAgtaagcaagctcgtaccctagctgtcatcaatgtttgccacaggtatagt Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aaagaagatgatcgcatggttagtgatcgtgtacattttttcttttctaggGATCCTGGT---GAAACCAGAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTGCACTTCACTTTCCAGCGCTCTGAAGTAGAATTTAACCATGTGTCAgtaagcaagctcgtaccctagctgtcatcaatgtttgccacaggtatagt Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aaagaagatgatcgcatggttagtgatcgtgtacattttttcttttctagGGATCCTGGT---GAAACCAGAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTGCACTTCACTTTCCAGCGCTCTGAAGTAGAATTTAACCATGTGTCAgtaagcaagctcgtaccctagctgtcatcaatgtttgccacaggtatagt Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aaagaagatgatcgcatggttagtgatcgtgtacattttttcttttctagGGATCCTGGT---GAAACCAGAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTGCACTTCACTTTCCAGCGCTCTGAAGTAGAATTTAACCATGTGTCAgtaagcaagctcgtaccctagctgtcatcaatgtttgccacaggtatagt Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aaagaagatgatcgcatggttagtgatcgtgtacattttttcttttctagGGATCCTGGT---GAAACCAGAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTGCACTTCACTTTCCAGCGCTCTGAAGTAGAATTTAACCATGTGTCAgtaagcaagctcgtaccctagctgtcatcaatgtttgccacaggtatagt Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aaagaagatgatcgcatggttagtgatcgtgtacattttttcttttctagGGATCCTGGT---GAAACCAGAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTGCACTTCACTTTCCAGCGCTCTGAAGTAGAATTTAACCATGTGTCAgtaagcaagctcgtaccctagctgtcatcaatgtttgccacaggtatagt Alignment from Exonerate_coding2genome aaagaagatgatcgcatggttagtgatcgtgtacattttttcttttctagggatcctggtgaaaccagagtatttcagaaagttagttccttgcctcctgtgcacttcactttccagcgctctgaagtagaatttaaccatgtgtcagtaagcaagctcgtaccctagctgtcatcaatgtttgccacaggtatagt Alignment from GeneWise GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aaagaagatgatcgcatggttagtgatcgtgtacattttttcttttctagGGATCCTGGT---GAAACCAGAGTATTTCAGAAAGTTAGTTCCTTGCCTCCTGTGCACTTCACTTTCCAGCGCTCTGAAGTAGAATTTAACCATGTGTCAgtaagcaagctcgtaccctagctgtcatcaatgtttgccacaggtatagt #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tgataacaaagcctggcaaagggtttgacgtgtgtcttctttctccacagGTCCCTCCCCCTAGTCTTATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTCATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCTACATTTGACCAGGGTGAGATTGTAGAAAAACACAATTCCACCATGGGGGCAAAAGAAGAAGAGGCTGCTCAGGGGGAAAGCAGTCTCCCCaggtgagatatagtcccaggttatgtcaaagttagatgtctatgtacttaca Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tgataacaaagcctggcaaagggtttgacgtgtgtcttctttctccacagGTCCCTCCCCCTAGTCTTATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTCATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCTACATTTGACCAGGGTGAGATTGTAGAAAAACACAATTCCACCATGGGGGCAAAAGAAGAAGAGGCTGCTCAGGGGGAAAGCAGTCTCCCCaggtgagatatagtcccaggttatgtcaaagttagatgtctatgtacttaca Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tgataacaaagcctggcaaagggtttgacgtgtgtcttctttctccacagGTCCCTCCCCCTAGTCTTATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTCATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCTACATTTGACCAGGGTGAGATTGTAGAAAAACACAATTCCACCATGGGGGCAAAAGAAGAAGAGGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtgagatatagtcccaggttatgtcaaagttagatgtctatgtacttaca Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tgataacaaagcctggcaaagggtttgacgtgtgtcttctttctccacagGTCCCTCCCCCTAGTCTTATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTCATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCTACATTTGACCAGGGTGAGATTGTAGAAAAACACAATTCCACCATGGGGGCAAAAGAAGAAGAGGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtgagatatagtcccaggttatgtcaaagttagatgtctatgtacttaca Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tgataacaaagcctggcaaagggtttgacgtgtgtcttctttctccacagGTCCCTCCCCCTAGTCTTATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTCATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCTACATTTGACCAGGGTGAGATTGTAGAAAAACACAATTCCACCATGGGGGCAAAAGAAGAAGAGGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtgagatatagtcccaggttatgtcaaagttagatgtctatgtacttaca Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tgataacaaagcctggcaaagggtttgacgtgtgtcttctttctccacagGTCCCTCCCCCTAGTCTTATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTCATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCTACATTTGACCAGGGTGAGATTGTAGAAAAACACAATTCCACCATGGGGGCAAAAGAAGAAGAGGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtgagatatagtcccaggttatgtcaaagttagatgtctatgtacttaca Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tgataacaaagcctggcaaagggtttgacgtgtgtcttctttctccacagGTCCCTCCCCCTAGTCTTATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTCATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCTACATTTGACCAGGGTGAGATTGTAGAAAAACACAATTCCACCATGGGGGCAAAAGAAGAAGAGGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtgagatatagtcccaggttatgtcaaagttagatgtctatgtacttaca Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tgataacaaagcctggcaaagggtttgacgtgtgtcttctttctccacagGTCCCTCCCCCTAGTCTTATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTCATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCTACATTTGACCAGGGTGAGATTGTAGAAAAACACAATTCCACCATGGGGGCAAAAGAAGAAGAGGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtgagatatagtcccaggttatgtcaaagttagatgtctatgtacttaca #### Pcsk5_ID4232_35 --> 1 - 1 Original Alignment aTATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCg tgaaacatgtcccctgaaaagcacaaaaacttttcccttcttaatttcagaTACTATGGAGAA---ACCAGTGGGAGGTGCGATAAATGTAGCAAAGCATGTAATCTGCGCTTGGGTCCCCCAAGGCCCACGGATTGCCATGTGTGTGATACTTTCTTTTTCCTTCTTCACTCCAAGGGGCAGGGCCAGTGCCATCACACTTGTCCTCGGCAATATTACGCAGACCCACATGCCCAGACCTGTGAAAGG------------TGTGATAAATGT---ggtaagtctttgttcaaactcctaaatggaagtgaaactggaaagaggatc Alignment from CESAR aTATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAGGGA------CAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCg tgaaacatgtcccctgaaaagcacaaaaacttttcccttcttaatttcagaTACTATGGAGAA---ACCAGTGGGAGGTGCGATAAATGTAGCAAAGCATGTAATCTGCGCTTGGGTCCCCCAAGGCCCACGGATTGCCATGTGTGTGATACTTTCTTTTTCCTTCTTCACTCCAAGGGGCAGGGCCAGTGCCATCACACTTGTCCTCGGCAATATTACGCAGACCCACATGCCCAGACCTGTGAAAGG------------TGTGATAAATGT---ggtaagtctttgttcaaactcctaaatggaagtgaaactggaaagaggatc Alignment from Spaln_aa2Genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGTCCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGC- tgaaacatgtcccctgaaaagcacaaaaacttttcccttcttaatttcagATACTATGGAGAAACCAGTGGGAGGTGCGATAAATGTAGCAAAGCATGTAATCTGCGCTTGGGTCCCCCAAGGCCCACGGATTGCCATGTGTGTGATACTTTCTTTTTCCTTCTTCACTCCAAGGGGCAGGGCCAGTGCCATCACACTTGTCCTCGGCAATATTACGCAGACCCACATGCCCAGACCTGTGAAAGG------------TGTGATAAATGTGgtaagtctttgttcaaactcctaaatggaagtgaaactggaaagaggatc Alignment from Spaln_nt2Genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGTCCAC---GGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAGGGACAG------TGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTG tgaaacatgtcccctgaaaagcacaaaaacttttcccttcttaatttcagATACTATGGAGAA---ACCAGTGGGAGGTGCGATAAATGTAGCAAAGCATGTAATCTGCGCTTGGGTCCCCCAAGGCCCACGGATTGCCATGTGTGTGATACTTTCTTTTTCCTTCTTCACTCCAAGGGGCAGGGCCAGTGCCATCACACTTGTCCTCGGCAATATTACGCAGACCCACATGCCCAGACCTGTGAAAGGTGTGA---TAAATGTGgtaagtctttgttcaaactcctaaatggaagtgaaactggaaagaggatc Alignment from Pairagon ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT------------------------------CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAGGGA------CAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGT tgaaacatgtcccctgaaaagcacaaaaacttttcccttcttaatttcagATACTATGGAGAA---ACCAGTGGGAGGTGCGATAAAT---------------------------GTAGCAAAGCATGTAATCTGCGCTTGGGTCCCCCAAGGCCCACGGATTGCCATGTGTGTGATACTTTCTTTTTCCTTCTTCACTCCAAGGGGCAGGGCCAGTGCCATCACACTTGTCCTCGGCAATATTACGCAGACCCACATGCCCAGACCTGTGAAAGGTgtgataaatgtggtaagtctttgttcaaactcctaaatggaagtgaaactggaaagaggatc Alignment from Exonerate_protein2genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCC tgaaacatgtcccctgaaaagcacaaaaacttttcccttcttaatttcagATACTATGGAGAA---ACCAGTGGGAGGTGCGATAAATGTAGCAAAGCATGTAATCTGCGCTTGGGTCCCCCAAGGCCCACGGATTGCCATGTGTGTGATACTTTCTTTTTCCTTCTTCACTCCAAGGGGCAGGGCCAGTGCCATCACACTTGTCCTCGGCAATATTACGCAGACCCACATGCCCAGACCTGTGAAAGGTGTGATAAatgtggtaagtctttgttcaaactcctaaatggaagtgaaactggaaagaggatc Alignment from Exonerate_coding2genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCC tgaaacatgtcccctgaaaagcacaaaaacttttcccttcttaatttcagATACTATGGAGAA---ACCAGTGGGAGGTGCGATAAATGTAGCAAAGCATGTAATCTGCGCTTGGGTCCCCCAAGGCCCACGGATTGCCATGTGTGTGATACTTTCTTTTTCCTTCTTCACTCCAAGGGGCAGGGCCAGTGCCATCACACTTGTCCTCGGCAATATTACGCAGACCCACATGCCCAGACCTGTGAAAGGTGTGATAAatgtggtaagtctttgttcaaactcctaaatggaagtgaaactggaaagaggatc Alignment from GeneWise ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGTCCA---CGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCA tgaaacatgtcccctgaaaagcacaaaaacttttcccttcttaatttcagATACTATGGAGAA---ACCAGTGGGAGGTGCGATAAATGTAGCAAAGCATGTAATCTGCGCTTGGGTCCCCCAAGGCCCACGGATTGCCATGTGTGTGATACTTTCTTTTTCCTTCTTCACTCCAAGGGGCAGGGCCAGTGCCATCACACTTGTCCTCGGCAATATTACGCAGACCCACATGCCCAGACCTGTGAAAGGTGT------------GATAAATGTGgtaagtctttgttcaaactcctaaatggaagtgaaactggaaagaggatc #### Pcsk5_ID4243_26 --> 1 - 1 Original Alignment gTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCg agctttttgaaactctgggtgtgccaagacaacctcttttgttgccccaggTTCAAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACGTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGAACCAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAggtgaggctacaccaacgagctataaaggcttatgagcaactacccacatg Alignment from CESAR gTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCg agctttttgaaactctgggtgtgccaagacaacctcttttgttgccccaggTTCAAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACGTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGAACCAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAggtgaggctacaccaacgagctataaaggcttatgagcaactacccacatg Alignment from Spaln_aa2Genome GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG agctttttgaaactctgggtgtgccaagacaacctcttttgttgccccagGTTCAAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACGTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGAACCAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtgaggctacaccaacgagctataaaggcttatgagcaactacccacatg Alignment from Spaln_nt2Genome GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG agctttttgaaactctgggtgtgccaagacaacctcttttgttgccccagGTTCAAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACGTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGAACCAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtgaggctacaccaacgagctataaaggcttatgagcaactacccacatg Alignment from Pairagon GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG agctttttgaaactctgggtgtgccaagacaacctcttttgttgccccagGTTCAAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACGTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGAACCAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtgaggctacaccaacgagctataaaggcttatgagcaactacccacatg Alignment from Exonerate_protein2genome GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG agctttttgaaactctgggtgtgccaagacaacctcttttgttgccccagGTTCAAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACGTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGAACCAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtgaggctacaccaacgagctataaaggcttatgagcaactacccacatg Alignment from Exonerate_coding2genome CCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACATGTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG agctttttgaaaCTCTGGGTGTGCCAAGACAACCTCTTTTGTTGCCCCAGGTTCAAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACGTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGAACCAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtgaggctacaccaacgagctataaaggcttatgagcaactacccacatg Alignment from GeneWise GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG agctttttgaaactctgggtgtgccaagacaacctcttttgttgccccagGTTCAAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACGTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGAACCAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtgaggctacaccaacgagctataaaggcttatgagcaactacccacatg #### Pcsk5_ID4257_24 --> 2 - 1 Original Alignment gtGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGg atcaactatacaatcaacccatatttataacaggtatttttccattacaggtGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGggtaaggcaacaagtgtatagagatacaatatgaagacaattgtgtctggg Alignment from CESAR gtGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGg atcaactatacaatcaacccatatttataacaggtatttttccattacaggtGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGggtaaggcaacaagtgtatagagatacaatatgaagacaattgtgtctggg Alignment from Spaln_aa2Genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG atcaactatacaatcaacccatatttataacaggtatttttccattacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcaacaagtgtatagagatacaatatgaagacaattgtgtctggg Alignment from Spaln_nt2Genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG atcaactatacaatcaacccatatttataacaggtatttttccattacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcaacaagtgtatagagatacaatatgaagacaattgtgtctggg Alignment from Pairagon GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG atcaactatacaatcaacccatatttataacaggtatttttccattacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcaacaagtgtatagagatacaatatgaagacaattgtgtctggg Alignment from Exonerate_protein2genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG atcaactatacaatcaacccatatttataacaggtatttttccattacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcaacaagtgtatagagatacaatatgaagacaattgtgtctggg Alignment from Exonerate_coding2genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGATGAT atcaactatacaatcaacccatatttataacaggtatttttccattacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGGTAAGgcaacaagtgtatagagatacaatatgaagacaattgtgtctggg Alignment from GeneWise GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG atcaactatacaatcaacccatatttataacaggtatttttccattacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcaacaagtgtatagagatacaatatgaagacaattgtgtctggg #### Pcsk5_ID4258_23 --> 2 - 1 Original Alignment acAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCAT---------------TATCCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAg tcatctctccctcaaaggatacagataacctgccctgtggattcttttagacCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAAAACTGCCCTGTTGGTCATTTCCAGTGGACAACCAATCCTGCGAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGTTACAACCCACATGTTTGCGGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCACAAGCTCGAATGCAAAAAAggtgagttctctcagaaatttaacctgatgatgcctcactcacaagaatct Alignment from CESAR acAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATTAT---------------CCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAg tcatctctccctcaaaggatacagataacctgccctgtggattcttttagacCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAAAACTGCCCTGTTGGTCATTTCCAGTGGACAACCAATCCTGCGAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGTTACAACCCACATGTTTGCGGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCACAAGCTCGAATGCAAAAAAggtgagttctctcagaaatttaacctgatgatgcctcactcacaagaatct Alignment from Spaln_aa2Genome ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATTAT---------------CCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG tcatctctccctcaaaggatacagataacctgccctgtggattcttttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAAAACTGCCCTGTTGGTCATTTCCAGTGGACAACCAATCCTGCGAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGTTACAACCCACATGTTTGCGGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCACAAGCTCGAATGCAAAAAAGgtgagttctctcagaaatttaacctgatgatgcctcactcacaagaatct Alignment from Spaln_nt2Genome ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATT---------------ATCCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG tcatctctccctcaaaggatacagataacctgccctgtggattcttttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAAAACTGCCCTGTTGGTCATTTCCAGTGGACAACCAATCCTGCGAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGTTACAACCCACATGTTTGCGGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCACAAGCTCGAATGCAAAAAAGgtgagttctctcagaaatttaacctgatgatgcctcactcacaagaatct Alignment from Pairagon ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATT---------------ATCCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG tcatctctccctcaaaggatacagataacctgccctgtggattcttttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAAAACTGCCCTGTTGGTCATTTCCAGTGGACAACCAATCCTGCGAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGTTACAACCCACATGTTTGCGGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCACAAGCTCGAATGCAAAAAAGgtgagttctctcagaaatttaacctgatgatgcctcactcacaagaatct Alignment from Exonerate_protein2genome ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATTAT---------------CCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG tcatctctccctcaaaggatacagataacctgccctgtggattcttttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAAAACTGCCCTGTTGGTCATTTCCAGTGGACAACCAATCCTGCGAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGTTACAACCCACATGTTTGCGGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCACAAGCTCGAATGCAAAAAAGgtgagttctctcagaaatttaacctgatgatgcctcactcacaagaatct Alignment from Exonerate_coding2genome ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATTAT---------------CCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG tcatctctccctcaaaggatacagataacctgccctgtggattcttttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAAAACTGCCCTGTTGGTCATTTCCAGTGGACAACCAATCCTGCGAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGTTACAACCCACATGTTTGCGGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCACAAGCTCGAATGCAAAAAAGgtgagttctctcagaaatttaacctgatgatgcctcactcacaagaatct Alignment from GeneWise ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATTAT---------------CCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG tcatctctccctcaaaggatacagataacctgccctgtggattcttttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAAAACTGCCCTGTTGGTCATTTCCAGTGGACAACCAATCCTGCGAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGTTACAACCCACATGTTTGCGGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCACAAGCTCGAATGCAAAAAAGgtgagttctctcagaaatttaacctgatgatgcctcactcacaagaatct #### Pcsk5_ID4259_22 --> 1 - 1 Original Alignment gGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAg aacgtcttttagtgttacatatgctgtggtaagcctttgcctttcctcaggGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATACTTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGTCATTATACATGCCAGGGCTGTGAAGGTAGTGGCCCTTCAAATTGTACCTCCTGTAAGGCTggtaagagacttgccacctgtcatttatgttgcaagaacctactttatgat Alignment from CESAR gGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAg aacgtcttttagtgttacatatgctgtggtaagcctttgcctttcctcaggGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATACTTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGTCATTATACATGCCAGGGCTGTGAAGGTAGTGGCCCTTCAAATTGTACCTCCTGTAAGGCTggtaagagacttgccacctgtcatttatgttgcaagaacctactttatgat Alignment from Spaln_aa2Genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG aacgtcttttagtgttacatatgctgtggtaagcctttgcctttcctcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATACTTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGTCATTATACATGCCAGGGCTGTGAAGGTAGTGGCCCTTCAAATTGTACCTCCTGTAAGGCTGgtaagagacttgccacctgtcatttatgttgcaagaacctactttatgat Alignment from Spaln_nt2Genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG aacgtcttttagtgttacatatgctgtggtaagcctttgcctttcctcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATACTTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGTCATTATACATGCCAGGGCTGTGAAGGTAGTGGCCCTTCAAATTGTACCTCCTGTAAGGCTGgtaagagacttgccacctgtcatttatgttgcaagaacctactttatgat Alignment from Pairagon GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG aacgtcttttagtgttacatatgctgtggtaagcctttgcctttcctcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATACTTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGTCATTATACATGCCAGGGCTGTGAAGGTAGTGGCCCTTCAAATTGTACCTCCTGTAAGGCTGgtaagagacttgccacctgtcatttatgttgcaagaacctactttatgat Alignment from Exonerate_protein2genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG aacgtcttttagtgttacatatgctgtggtaagcctttgcctttcctcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATACTTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGTCATTATACATGCCAGGGCTGTGAAGGTAGTGGCCCTTCAAATTGTACCTCCTGTAAGGCTGgtaagagacttgccacctgtcatttatgttgcaagaacctactttatgat Alignment from Exonerate_coding2genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG aacgtcttttagtgttacatatgctgtggtaagcctttgcctttcctcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATACTTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGTCATTATACATGCCAGGGCTGTGAAGGTAGTGGCCCTTCAAATTGTACCTCCTGTAAGGCTGgtaagagacttgccacctgtcatttatgttgcaagaacctactttatgat Alignment from GeneWise GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG aacgtcttttagtgttacatatgctgtggtaagcctttgcctttcctcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATACTTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGTCATTATACATGCCAGGGCTGTGAAGGTAGTGGCCCTTCAAATTGTACCTCCTGTAAGGCTGgtaagagacttgccacctgtcatttatgttgcaagaacctactttatgat #### Pcsk5_ID4264_19 --> 2 - 2 Original Alignment ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag agtttgatatgtacaaactgattgccttcatgctgtgtgttctttgccagggGCTGGAGCAGATGGGTTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAAAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtgagtttatcaatgatactctacccctgacaccaactgtgattttttta Alignment from CESAR ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag agtttgatatgtacaaactgattgccttcatgctgtgtgttctttgccagggGCTGGAGCAGATGGGTTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAAAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtgagtttatcaatgatactctacccctgacaccaactgtgattttttta Alignment from Spaln_aa2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG agtttgatatgtacaaactgattgccttcatgctgtgtgttctttgccagGGGCTGGAGCAGATGGGTTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAAAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatgatactctacccctgacaccaactgtgattttttta Alignment from Spaln_nt2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG agtttgatatgtacaaactgattgccttcatgctgtgtgttctttgccagGGGCTGGAGCAGATGGGTTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAAAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatgatactctacccctgacaccaactgtgattttttta Alignment from Pairagon GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG agtttgatatgtacaaactgattgccttcatgctgtgtgttctttgccagGGGCTGGAGCAGATGGGTTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAAAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatgatactctacccctgacaccaactgtgattttttta Alignment from Exonerate_protein2genome CTTGCTCT------GGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG agtttgatatgtacaaactgattgccttcatgctgTGTGTTCTTTGCCAGGGGCTGGAGCAGATGGGTTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAAAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatgatactctacccctgacaccaactgtgattttttta Alignment from Exonerate_coding2genome CTTGCTCT------GGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG agtttgatatgtacaaactgattgccttcatgctgTGTGTTCTTTGCCAGGGGCTGGAGCAGATGGGTTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAAAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatgatactctacccctgacaccaactgtgattttttta Alignment from GeneWise GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG agtttgatatgtacaaactgattgccttcatgctgtgtgttctttgccagGGGCTGGAGCAGATGGGTTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAAAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatgatactctacccctgacaccaactgtgattttttta #### Pcsk5_ID4289_9 --> 0 - 2 Original Alignment ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaa cagatctctttaactatgccacacagatttttatttatatttccttctagATTACCACTGATCTTCGGCAGCAATGCACAGACAATCACACTGGAACATCAGCCTCAGCACCGATGTCAGCGGGCATAATTGCACTAGCATTAGAAGCCaagtgagtggggtgtctatcagctccattctctttgctttcatggacttgtg Alignment from CESAR ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaa cagatctctttaactatgccacacagatttttatttatatttccttctagATTACCACTGATCTTCGGCAGCAATGCACAGACAATCACACTGGAACATCAGCCTCAGCACCGATGTCAGCGGGCATAATTGCACTAGCATTAGAAGCCaagtgagtggggtgtctatcagctccattctctttgctttcatggacttgtg Alignment from Spaln_aa2Genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA cagatctctttaactatgccacacagatttttatttatatttccttctagATTACCACTGATCTTCGGCAGCAATGCACAGACAATCACACTGGAACATCAGCCTCAGCACCGATGTCAGCGGGCATAATTGCACTAGCATTAGAAGCCAAgtgagtggggtgtctatcagctccattctctttgctttcatggacttgtg Alignment from Spaln_nt2Genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA cagatctctttaactatgccacacagatttttatttatatttccttctagATTACCACTGATCTTCGGCAGCAATGCACAGACAATCACACTGGAACATCAGCCTCAGCACCGATGTCAGCGGGCATAATTGCACTAGCATTAGAAGCCAAgtgagtggggtgtctatcagctccattctctttgctttcatggacttgtg Alignment from Pairagon ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA cagatctctttaactatgccacacagatttttatttatatttccttctagATTACCACTGATCTTCGGCAGCAATGCACAGACAATCACACTGGAACATCAGCCTCAGCACCGATGTCAGCGGGCATAATTGCACTAGCATTAGAAGCCAAgtgagtggggtgtctatcagctccattctctttgctttcatggacttgtg Alignment from Exonerate_protein2genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA cagatctctttaactatgccacacagatttttatttatatttccttctagATTACCACTGATCTTCGGCAGCAATGCACAGACAATCACACTGGAACATCAGCCTCAGCACCGATGTCAGCGGGCATAATTGCACTAGCATTAGAAGCCAAgtgagtggggtgtctatcagctccattctctttgctttcatggacttgtg Alignment from Exonerate_coding2genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA cagatctctttaactatgccacacagatttttatttatatttccttctagATTACCACTGATCTTCGGCAGCAATGCACAGACAATCACACTGGAACATCAGCCTCAGCACCGATGTCAGCGGGCATAATTGCACTAGCATTAGAAGCCAAgtgagtggggtgtctatcagctccattctctttgctttcatggacttgtg Alignment from GeneWise ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA cagatctctttaactatgccacacagatttttatttatatttccttctagATTACCACTGATCTTCGGCAGCAATGCACAGACAATCACACTGGAACATCAGCCTCAGCACCGATGTCAGCGGGCATAATTGCACTAGCATTAGAAGCCAAgtgagtggggtgtctatcagctccattctctttgctttcatggacttgtg #### Pcsk5_ID4307_5 --> 0 - 2 Original Alignment GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACaa tctatcttatatacttgtgtctaagatctcttttttcttaatcttctcagGATGCTCTAGCTAGCTGTGATGTGAATGGGAATGACTTGGACCGAGCACCTCGTTATGATGCAAGCAATGAGAATaagtatgtttctatgtaagggagaggcatcccttaccactcttgtgatctgc Alignment from CESAR GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACaa tctatcttatatacttgtgtctaagatctcttttttcttaatcttctcagGATGCTCTAGCTAGCTGTGATGTGAATGGGAATGACTTGGACCGAGCACCTCGTTATGATGCAAGCAATGAGAATaagtatgtttctatgtaagggagaggcatcccttaccactcttgtgatctgc Alignment from Spaln_aa2Genome GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA tctatcttatatacttgtgtctaagatctcttttttcttaatcttctcagGATGCTCTAGCTAGCTGTGATGTGAATGGGAATGACTTGGACCGAGCACCTCGTTATGATGCAAGCAATGAGAATAAgtatgtttctatgtaagggagaggcatcccttaccactcttgtgatctgc Alignment from Spaln_nt2Genome GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA tctatcttatatacttgtgtctaagatctcttttttcttaatcttctcagGATGCTCTAGCTAGCTGTGATGTGAATGGGAATGACTTGGACCGAGCACCTCGTTATGATGCAAGCAATGAGAATAAgtatgtttctatgtaagggagaggcatcccttaccactcttgtgatctgc Alignment from Pairagon GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA tctatcttatatacttgtgtctaagatctcttttttcttaatcttctcagGATGCTCTAGCTAGCTGTGATGTGAATGGGAATGACTTGGACCGAGCACCTCGTTATGATGCAAGCAATGAGAATAAgtatgtttctatgtaagggagaggcatcccttaccactcttgtgatctgc Alignment from Exonerate_protein2genome GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA tctatcttatatacttgtgtctaagatctcttttttcttaatcttctcagGATGCTCTAGCTAGCTGTGATGTGAATGGGAATGACTTGGACCGAGCACCTCGTTATGATGCAAGCAATGAGAATAAgtatgtttctatgtaagggagaggcatcccttaccactcttgtgatctgc Alignment from Exonerate_coding2genome GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA tctatcttatatacttgtgtctaagatctcttttttcttaatcttctcagGATGCTCTAGCTAGCTGTGATGTGAATGGGAATGACTTGGACCGAGCACCTCGTTATGATGCAAGCAATGAGAATAAgtatgtttctatgtaagggagaggcatcccttaccactcttgtgatctgc Alignment from GeneWise GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA tctatcttatatacttgtgtctaagatctcttttttcttaatcttctcagGATGCTCTAGCTAGCTGTGATGTGAATGGGAATGACTTGGACCGAGCACCTCGTTATGATGCAAGCAATGAGAATAAgtatgtttctatgtaagggagaggcatcccttaccactcttgtgatctgc #### Pcsk5_ID4309_4 --> 0 - 0 Original Alignment CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC acccaatacaaaactcctgagtgatccttgaccccgttttttccttccagTATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGATTATTGAGGGGGCCTGGAAACGAGGCTACACGGGAAAGAATGTGGTGGTGACTATCCTTGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatatcgggcagatagaaacagtccacatcttttgagaggggatt Alignment from CESAR CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC acccaatacaaaactcctgagtgatccttgaccccgttttttccttccagTATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGATTATTGAGGGGGCCTGGAAACGAGGCTACACGGGAAAGAATGTGGTGGTGACTATCCTTGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatatcgggcagatagaaacagtccacatcttttgagaggggatt Alignment from Spaln_aa2Genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC acccaatacaaaactcctgagtgatccttgaccccgttttttccttccagTATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGATTATTGAGGGGGCCTGGAAACGAGGCTACACGGGAAAGAATGTGGTGGTGACTATCCTTGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatatcgggcagatagaaacagtccacatcttttgagaggggatt Alignment from Spaln_nt2Genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC acccaatacaaaactcctgagtgatccttgaccccgttttttccttccagTATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGATTATTGAGGGGGCCTGGAAACGAGGCTACACGGGAAAGAATGTGGTGGTGACTATCCTTGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatatcgggcagatagaaacagtccacatcttttgagaggggatt Alignment from Pairagon CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC acccaatacaaaactcctgagtgatccttgaccccgttttttccttccagTATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGATTATTGAGGGGGCCTGGAAACGAGGCTACACGGGAAAGAATGTGGTGGTGACTATCCTTGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatatcgggcagatagaaacagtccacatcttttgagaggggatt Alignment from Exonerate_protein2genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC acccaatacaaaactcctgagtgatccttgaccccgttttttccttccagTATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGATTATTGAGGGGGCCTGGAAACGAGGCTACACGGGAAAGAATGTGGTGGTGACTATCCTTGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatatcgggcagatagaaacagtccacatcttttgagaggggatt Alignment from Exonerate_coding2genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC acccaatacaaaactcctgagtgatccttgaccccgttttttccttccagTATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGATTATTGAGGGGGCCTGGAAACGAGGCTACACGGGAAAGAATGTGGTGGTGACTATCCTTGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatatcgggcagatagaaacagtccacatcttttgagaggggatt Alignment from GeneWise CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC acccaatacaaaactcctgagtgatccttgaccccgttttttccttccagTATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGATTATTGAGGGGGCCTGGAAACGAGGCTACACGGGAAAGAATGTGGTGGTGACTATCCTTGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatatcgggcagatagaaacagtccacatcttttgagaggggatt #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg ggtggttgtattgaaaatgcctggctgcatcactgaatttcttattgcagGAACTAGAAAAGAATTATACCAGAGCCTACTCAGAAGCCTTAGCAGCCTTTGGGAATAGAGCCCTGTTTGTTGAAAACTTTATTGGCCAGCCAAGCCATTTTGAGGAGCAGGTCCTGggtaagaaaatagatggctgcaactgtctaacattttcgagagacccaaca Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg ggtggttgtattgaaaatgcctggctgcatcactgaatttcttattgcagGAACTAGAAAAGAATTATACCAGAGCCTACTCAGAAGCCTTAGCAGCCTTTGGGAATAGAGCCCTGTTTGTTGAAAACTTTATTGGCCAGCCAAGCCATTTTGAGGAGCAGGTCCTGggtaagaaaatagatggctgcaactgtctaacattttcgagagacccaaca Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcatcactgaatttcttattgcagGAACTAGAAAAGAATTATACCAGAGCCTACTCAGAAGCCTTAGCAGCCTTTGGGAATAGAGCCCTGTTTGTTGAAAACTTTATTGGCCAGCCAAGCCATTTTGAGGAGCAGGTCCTGGgtaagaaaatagatggctgcaactgtctaacattttcgagagacccaaca Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcatcactgaatttcttattgcagGAACTAGAAAAGAATTATACCAGAGCCTACTCAGAAGCCTTAGCAGCCTTTGGGAATAGAGCCCTGTTTGTTGAAAACTTTATTGGCCAGCCAAGCCATTTTGAGGAGCAGGTCCTGGgtaagaaaatagatggctgcaactgtctaacattttcgagagacccaaca Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcatcactgaatttcttattgcagGAACTAGAAAAGAATTATACCAGAGCCTACTCAGAAGCCTTAGCAGCCTTTGGGAATAGAGCCCTGTTTGTTGAAAACTTTATTGGCCAGCCAAGCCATTTTGAGGAGCAGGTCCTGGgtaagaaaatagatggctgcaactgtctaacattttcgagagacccaaca Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcatcactgaatttcttattgcagGAACTAGAAAAGAATTATACCAGAGCCTACTCAGAAGCCTTAGCAGCCTTTGGGAATAGAGCCCTGTTTGTTGAAAACTTTATTGGCCAGCCAAGCCATTTTGAGGAGCAGGTCCTGGgtaagaaaatagatggctgcaactgtctaacattttcgagagacccaaca Alignment from Exonerate_coding2genome ggtggttgtattgaaaatgcctggctgcatcactgaatttcttattgcaggaactagaaaagaattataccagagcctactcagaagccttagcagcctttgggaatagagccctgtttgttgaaaactttattggccagccaagccattttgaggagcaggtcctgggtaagaaaatagatggctgcaactgtctaacattttcgagagacccaaca Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcatcactgaatttcttattgcagGAACTAGAAAAGAATTATACCAGAGCCTACTCAGAAGCCTTAGCAGCCTTTGGGAATAGAGCCCTGTTTGTTGAAAACTTTATTGGCCAGCCAAGCCATTTTGAGGAGCAGGTCCTGGgtaagaaaatagatggctgcaactgtctaacattttcgagagacccaaca #### Pcx_ID562_11 --> 0 - 1 Original Alignment ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCg catgcaaagaacaagccaaattagctacattttttacttttccatcttagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACCCAGTTCATTGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGTGCTCAGAAATTGTTACATTACCTTggtgagtttgcatgcctttttctgaacatttttagcctcactggttttccc Alignment from CESAR ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCg catgcaaagaacaagccaaattagctacattttttacttttccatcttagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACCCAGTTCATTGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGTGCTCAGAAATTGTTACATTACCTTggtgagtttgcatgcctttttctgaacatttttagcctcactggttttccc Alignment from Spaln_aa2Genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcaaagaacaagccaaattagctacattttttacttttccatcttagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACCCAGTTCATTGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGTGCTCAGAAATTGTTACATTACCTTGgtgagtttgcatgcctttttctgaacatttttagcctcactggttttccc Alignment from Spaln_nt2Genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcaaagaacaagccaaattagctacattttttacttttccatcttagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACCCAGTTCATTGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGTGCTCAGAAATTGTTACATTACCTTGgtgagtttgcatgcctttttctgaacatttttagcctcactggttttccc Alignment from Pairagon ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcaaagaacaagccaaattagctacattttttacttttccatcttagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACCCAGTTCATTGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGTGCTCAGAAATTGTTACATTACCTTGgtgagtttgcatgcctttttctgaacatttttagcctcactggttttccc Alignment from Exonerate_protein2genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcaaagaacaagccaaattagctacattttttacttttccatcttagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACCCAGTTCATTGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGTGCTCAGAAATTGTTACATTACCTTGgtgagtttgcatgcctttttctgaacatttttagcctcactggttttccc Alignment from Exonerate_coding2genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcaaagaacaagccaaattagctacattttttacttttccatcttagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACCCAGTTCATTGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGTGCTCAGAAATTGTTACATTACCTTGgtgagtttgcatgcctttttctgaacatttttagcctcactggttttccc Alignment from GeneWise ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcaaagaacaagccaaattagctacattttttacttttccatcttagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACCCAGTTCATTGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGTGCTCAGAAATTGTTACATTACCTTGgtgagtttgcatgcctttttctgaacatttttagcctcactggttttccc #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg tccccatctttacatcatggctgaggcacctggtcttctcctgtctccagGGCATAGCAGGCTTGCTGAAGCCAGCAGCCTGCACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAGGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCGTTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAggtaagtaagaagagttgctacaaaaacataatactactcccttctaacgt Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg tccccatctttacatcatggctgaggcacctggtcttctcctgtctccagGGCATAGCAGGCTTGCTGAAGCCAGCAGCCTGCACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAGGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCGTTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAggtaagtaagaagagttgctacaaaaacataatactactcccttctaacgt Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tccccatctttacatcatggctgaggcacctggtcttctcctgtctccagGGCATAGCAGGCTTGCTGAAGCCAGCAGCCTGCACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAGGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCGTTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaagtaagaagagttgctacaaaaacataatactactcccttctaacgt Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tccccatctttacatcatggctgaggcacctggtcttctcctgtctccagGGCATAGCAGGCTTGCTGAAGCCAGCAGCCTGCACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAGGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCGTTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaagtaagaagagttgctacaaaaacataatactactcccttctaacgt Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tccccatctttacatcatggctgaggcacctggtcttctcctgtctccagGGCATAGCAGGCTTGCTGAAGCCAGCAGCCTGCACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAGGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCGTTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaagtaagaagagttgctacaaaaacataatactactcccttctaacgt Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tccccatctttacatcatggctgaggcacctggtcttctcctgtctccagGGCATAGCAGGCTTGCTGAAGCCAGCAGCCTGCACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAGGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCGTTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaagtaagaagagttgctacaaaaacataatactactcccttctaacgt Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tccccatctttacatcatggctgaggcacctggtcttctcctgtctccagGGCATAGCAGGCTTGCTGAAGCCAGCAGCCTGCACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAGGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCGTTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaagtaagaagagttgctacaaaaacataatactactcccttctaacgt Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tccccatctttacatcatggctgaggcacctggtcttctcctgtctccagGGCATAGCAGGCTTGCTGAAGCCAGCAGCCTGCACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAGGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCGTTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaagtaagaagagttgctacaaaaacataatactactcccttctaacgt #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgaacagttatctttccattacagGAAATGCA Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttggaccaagatctctctctttcagGAAATGCA Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCAC aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgaacagttatctttccattacagGAAATGCA Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgaacagttatctttccattacagGAAATGCA Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgaacagttatctttccattacagGAAATGCA Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgaacagttatctttccattacagGAAATGCA Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgaacagttatctttccattacagGAAATGCA Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG GAGATGCA aaacatcatgcacccaatttagaaggggtgtcttctgttttcatgattagGTTAAGCTAGAACAAGGAAAAACACTGCACATTAAAGCACTAGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTGTGAACTCAATGGCCAGCTTCGATCAATTCTGGTCAAAGACACGGAGGCCATGAAGgtgagatcaagtttgatttgaacagttatctttccattacagGAAATGCA #### Pdcd11_ID10110_4 --> 0 - 0 Original Alignment GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG gtttcatttatcagaaattcaatgttagggagggctgctttcccttccagGGCCTCCCT---TTACCTGAACTTTTCTCCCCAGGGATGTTGGTGCGATGTGTGGTA------ATGGATGTCACAGAGTGTGGGAAAAAAAGTGTTAGGATCTCAGTGAATCCCAATTGTATTAACAGAGTGCTAAGTATTGATGCCCTC---------ATGgtaaatatctggagtgtactgtcagtgcctgccttaggtactctttggta Alignment from CESAR GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG gtttcatttatcagaaattcaatgttagggagggctgctttcccttccagGGC---CTCCCTTTACCTGAACTTTTCTCCCCAGGGATGTTGGTGCGATGTGTGGTA------ATGGATGTCACAGAGTGTGGGAAAAAAAGTGTTAGGATCTCAGTGAATCCCAATTGTATTAACAGAGTGCTAAGTATTGATGCCCTC---------ATGgtaaatatctggagtgtactgtcagtgcctgccttaggtactctttggta Alignment from Spaln_aa2Genome GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG gtttcatttatcagaaattcaatgttagggagggctgctttcccttccagGGCCTCCCT---TTACCTGAACTTTTCTCCCCAGGGATGTTGGTGCGATGTGTGGTA------ATGGATGTCACAGAGTGTGGGAAAAAAAGTGTTAGGATCTCAGTGAATCCCAATTGTATTAACAGAGTGCTAAGTATTGATGCCCTC---------ATGgtaaatatctggagtgtactgtcagtgcctgccttaggtactctttggta Alignment from Spaln_nt2Genome GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGG gtttcatttatcagaaattcaatgttagggagggctgctttcccttccagGGC---CTCCCTTTACCTGAACTTTTCTCCCCAGGGATGTTGGTGCGATGTGTGGTAA------TGGATGTCACAGAGTGTGGGAAAAAAAGTGTTAGGATCTCAGTGAATCCCAATTGTATTAACAGAGTGCTAAGTATTGATGCCCTCATGgtaaatatctggagtgtactgtcagtgcctgccttaggtactctttggta Alignment from Pairagon GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG gtttcatttatcagaaattcaatgttagggagggctgctttcccttccagGGC---CTCCCTTTACCTGAACTTTTCTCCCCAGGGATGTTGGTGCGATGTGTGGTAA------TGGATGTCACAGAGTGTGGGAAAAAAAGTGTTAGGATCTCAGTGAATCCCAATTGTATTAACAGAGTGCTAAGTATTGATGCCCT---------CATGgtaaatatctggagtgtactgtcagtgcctgccttaggtactctttggta Alignment from Exonerate_protein2genome GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG gtttcatttatcagaaattcaatgttagggagggctgctttcccttccagGGC---CTCCCTTTACCTGAACTTTTCTCCCCAGGGATGTTGGTGCGATGTGTGGTA------ATGGATGTCACAGAGTGTGGGAAAAAAAGTGTTAGGATCTCAGTGAATCCCAATTGTATTAACAGAGTGCTAAGTATTGATGCCCTCATGGTAAATATCtggagtgtactgtcagtgcctgccttaggtactctttggta Alignment from Exonerate_coding2genome gtttcatttatcagaaattcaatgttagggagggctgctttcccttccagggcctccctttacctgaacttttctccccagggatgttggtgcgatgtgtggtaatggatgtcacagagtgtgggaaaaaaagtgttaggatctcagtgaatcccaattgtattaacagagtgctaagtattgatgccctcatggtaaatatctggagtgtactgtcagtgcctgccttaggtactctttggta Alignment from GeneWise GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG gtttcatttatcagaaattcaatgttagggagggctgctttcccttccagGGCCTC---CCTTTACCTGAACTTTTCTCCCCAGGGATGTTGGTGCGATGTGTGGTA------ATGGATGTCACAGAGTGTGGGAAAAAAAGTGTTAGGATCTCAGTGAATCCCAATTGTATTAACAGAGTGCTAAGTATTGATGCCCTC---------ATGgtaaatatctggagtgtactgtcagtgcctgccttaggtactctttggta #### Pdcd11_ID10111_5 --> 0 - 1 Original Alignment CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAg catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAggtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from CESAR CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAg catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAggtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from Spaln_aa2Genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAGgtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from Spaln_nt2Genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAGgtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from Pairagon CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAGgtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from Exonerate_protein2genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAGgtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from Exonerate_coding2genome catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagctcctgacaggaacagtttctagcctcgaagaccatggctaccttgtgagaattggagttggcacaactagagcctttctattactgaagaaggcacaagcgtacactcgacagaagaacaaaggtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat Alignment from GeneWise CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcctctgttacaaacacccaaaagtctcttctgtgtctccctccagCTCCTGACAGGAACAGTTTCTAGCCTCGAAGACCATGGCTACCTTGTGAGAATTGGAGTTGGCACAACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGCGTACACTCGACAGAAGAACAAAGgtttgtcaactttaatccttgtgtttcacattaggggttcttattgctat #### Pdcd11_ID10117_11 --> 0 - 0 Original Alignment GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaaaaactgttttactagtcttatgaggtatcatctatctgaactttcagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTCGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCTATGCACCTAGCTGACATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAGGTCAAATGCAGGgtaaggagcaatattagtatttaaaggtttacatcatccagattattgct Alignment from CESAR GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaaaaactgttttactagtcttatgaggtatcatctatctgaactttcagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTCGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCTATGCACCTAGCTGACATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAGGTCAAATGCAGGgtaaggagcaatattagtatttaaaggtttacatcatccagattattgct Alignment from Spaln_aa2Genome GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaaaaactgttttactagtcttatgaggtatcatctatctgaactttcagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTCGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCTATGCACCTAGCTGACATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAGGTCAAATGCAGGgtaaggagcaatattagtatttaaaggtttacatcatccagattattgct Alignment from Spaln_nt2Genome GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaaaaactgttttactagtcttatgaggtatcatctatctgaactttcagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTCGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCTATGCACCTAGCTGACATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAGGTCAAATGCAGGgtaaggagcaatattagtatttaaaggtttacatcatccagattattgct Alignment from Pairagon GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaaaaactgttttactagtcttatgaggtatcatctatctgaactttcagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTCGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCTATGCACCTAGCTGACATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAGGTCAAATGCAGGgtaaggagcaatattagtatttaaaggtttacatcatccagattattgct Alignment from Exonerate_protein2genome GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaaaaactgttttactagtcttatgaggtatcatctatctgaactttcagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTCGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCTATGCACCTAGCTGACATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAGGTCAAATGCAGGgtaaggagcaatattagtatttaaaggtttacatcatccagattattgct Alignment from Exonerate_coding2genome aaaaaactgttttactagtcttatgaggtatcatctatctgaactttcagggcacagtgctagccatcaagccctttggtatcctcgtgaaagtgggtgagcagatcaaaggtctggtgccctctatgcacctagctgacatcatgacaaaaaatccagaaaaaaagtacagcccaggggatgaggtcaaatgcagggtaaggagcaatattagtatttaaaggtttacatcatccagattattgct Alignment from GeneWise GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaaaaactgttttactagtcttatgaggtatcatctatctgaactttcagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTCGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCTATGCACCTAGCTGACATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAGGTCAAATGCAGGgtaaggagcaatattagtatttaaaggtttacatcatccagattattgct #### Pdcd11_ID10124_18 --> 2 - 0 Original Alignment ggCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG gtaccaccctacatcatttccattatgatcaccccgccatgcactcccaggcCAAGAGGTTGAACCTGGACAGAAAAAGGAAGTAGTGGTGTTACAAGTTGATATGTTGAAGTTAGATGTACATGTTTCGCTTCACCAGGACCTAGTGAACAGGAAGACAAGAAAAgtaacgtgctacaattagcatgatctgtaactcctatgaaatctatcagg Alignment from CESAR ggCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG gtaccaccctacatcatttccattatgatcaccccgccatgcactcccaggcCAAGAGGTTGAACCTGGACAGAAAAAGGAAGTAGTGGTGTTACAAGTTGATATGTTGAAGTTAGATGTACATGTTTCGCTTCACCAGGACCTAGTGAACAGGAAGACAAGAAAAgtaacgtgctacaattagcatgatctgtaactcctatgaaatctatcagg Alignment from Spaln_aa2Genome GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG gtaccaccctacatcatttccattatgatcaccccgccatgcactcccagGCCAAGAGGTTGAACCTGGACAGAAAAAGGAAGTAGTGGTGTTACAAGTTGATATGTTGAAGTTAGATGTACATGTTTCGCTTCACCAGGACCTAGTGAACAGGAAGACAAGAAAAgtaacgtgctacaattagcatgatctgtaactcctatgaaatctatcagg Alignment from Spaln_nt2Genome GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG gtaccaccctacatcatttccattatgatcaccccgccatgcactcccagGCCAAGAGGTTGAACCTGGACAGAAAAAGGAAGTAGTGGTGTTACAAGTTGATATGTTGAAGTTAGATGTACATGTTTCGCTTCACCAGGACCTAGTGAACAGGAAGACAAGAAAAgtaacgtgctacaattagcatgatctgtaactcctatgaaatctatcagg Alignment from Pairagon GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG gtaccaccctacatcatttccattatgatcaccccgccatgcactcccagGCCAAGAGGTTGAACCTGGACAGAAAAAGGAAGTAGTGGTGTTACAAGTTGATATGTTGAAGTTAGATGTACATGTTTCGCTTCACCAGGACCTAGTGAACAGGAAGACAAGAAAAgtaacgtgctacaattagcatgatctgtaactcctatgaaatctatcagg Alignment from Exonerate_protein2genome GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG gtaccaccctacatcatttccattatgatcaccccgccatgcactcccagGCCAAGAGGTTGAACCTGGACAGAAAAAGGAAGTAGTGGTGTTACAAGTTGATATGTTGAAGTTAGATGTACATGTTTCGCTTCACCAGGACCTAGTGAACAGGAAGACAAGAAAAgtaacgtgctacaattagcatgatctgtaactcctatgaaatctatcagg Alignment from Exonerate_coding2genome GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG gtaccaccctacatcatttccattatgatcaccccgccatgcactcccagGCCAAGAGGTTGAACCTGGACAGAAAAAGGAAGTAGTGGTGTTACAAGTTGATATGTTGAAGTTAGATGTACATGTTTCGCTTCACCAGGACCTAGTGAACAGGAAGACAAGAAAAgtaacgtgctacaattagcatgatctgtaactcctatgaaatctatcagg Alignment from GeneWise GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG gtaccaccctacatcatttccattatgatcaccccgccatgcactcccagGCCAAGAGGTTGAACCTGGACAGAAAAAGGAAGTAGTGGTGTTACAAGTTGATATGTTGAAGTTAGATGTACATGTTTCGCTTCACCAGGACCTAGTGAACAGGAAGACAAGAAAAgtaacgtgctacaattagcatgatctgtaactcctatgaaatctatcagg #### Pdcd11_ID10127_21 --> 1 - 0 Original Alignment tGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG tgctccctgaagcagctgccccttctccaatgattttctttaatcaccagtGAAGTAAAGGGCAGTTACAGTGCTCTAAAAACTCATTCTAGAAGTCCTGTGGAGAAGATCAAGCAGTACCAG---------ACTGTGTCATGCTTCTTTAAGGAGgtaattgatagaccatacacttgggacacctgaggtcttccatgggaata Alignment from CESAR tGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG tgctccctgaagcagctgccccttctccaatgattttctttaatcaccagtGAAGTAAAGGGCAGTTACAGTGCTCTAAAAACTCATTCTAGAAGTCCTGTGGAGAAGATCAAGCAGTAC---------CAGACTGTGTCATGCTTCTTTAAGGAGgtaattgatagaccatacacttgggacacctgaggtcttccatgggaata Alignment from Spaln_aa2Genome TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG tgctccctgaagcagctgccccttctccaatgattttctttaatcaccagTGAAGTAAAGGGCAGTTACAGTGCTCTAAAAACTCATTCTAGAAGTCCTGTGGAGAAGATCAAGCAGTACCAG---------ACTGTGTCATGCTTCTTTAAGGAGgtaattgatagaccatacacttgggacacctgaggtcttccatgggaata Alignment from Spaln_nt2Genome TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG tgctccctgaagcagctgccccttctccaatgattttctttaatcaccagTGAAGTAAAGGGCAGTTACAGTGCTCTAAAAACTCATTCTAGAAGTCCTGTGGAGAAGATCAAGCAGTACCAGA---------CTGTGTCATGCTTCTTTAAGGAGgtaattgatagaccatacacttgggacacctgaggtcttccatgggaata Alignment from Pairagon TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG tgctccctgaagcagctgccccttctccaatgattttctttaatcaccagTGAAGTAAAGGGCAGTTACAGTGCTCTAAAAACTCATTCTAGAAGTCCTGTGGAGAAGATCAAGCAGTAC---------CAGACTGTGTCATGCTTCTTTAAGGAGgtaattgatagaccatacacttgggacacctgaggtcttccatgggaata Alignment from Exonerate_protein2genome TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG tgctccctgaagcagctgccccttctccaatgattttctttaatcaccagTGAAGTAAAGGGCAGTTACAGTGCTCTAAAAACTCATTCTAGAAGTCCTGTGGAGAAGATCAAGCAGTAC---------CAGACTGTGTCATGCTTCTTTAAGGAGgtaattgatagaccatacacttgggacacctgaggtcttccatgggaata Alignment from Exonerate_coding2genome TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG tgctccctgaagcagctgccccttctccaatgattttctttaatcaccagTGAAGTAAAGGGCAGTTACAGTGCTCTAAAAACTCATTCTAGAAGTCCTGTGGAGAAGATCAAGCAGTAC---------CAGACTGTGTCATGCTTCTTTAAGGAGgtaattgatagaccatacacttgggacacctgaggtcttccatgggaata Alignment from GeneWise TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG tgctccctgaagcagctgccccttctccaatgattttctttaatcaccagTGAAGTAAAGGGCAGTTACAGTGCTCTAAAAACTCATTCTAGAAGTCCTGTGGAGAAGATCAAGCAGTACCAG---------ACTGTGTCATGCTTCTTTAAGGAGgtaattgatagaccatacacttgggacacctgaggtcttccatgggaata #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctgaagcattctatttgcctcacattttcttcttaactttagcATCAACCCCACAAAGAACTTGAGAGAGTTGACCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCTGAGCCAGAACAAGAAGAGGGCAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAGGAATCAGAAGAGGCGAGATGAGAAGGAGGAACCGCAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaagcagtgtataccatgttttgttatgggacggctttttgctg Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctgaagcattctatttgcctcacattttcttcttaactttagcATCAACCCCACAAAGAACTTGAGAGAGTTGACCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCTGAGCCAGAACAAGAAGAGGGCAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAGGAATCAGAAGAGGCGAGATGAGAAGGAGGAACCGCAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaagcagtgtataccatgttttgttatgggacggctttttgctg Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctgaagcattctatttgcctcacattttcttcttaactttagCATCAACCCCACAAAGAACTTGAGAGAGTTGACCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCTGAGCCAGAACAAGAAGAGGGCAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAGGAATCAGAAGAGGCGAGATGAGAAGGAGGAACCGCAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaagcagtgtataccatgttttgttatgggacggctttttgctg Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctgaagcattctatttgcctcacattttcttcttaactttagCATCAACCCCACAAAGAACTTGAGAGAGTTGACCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCTGAGCCAGAACAAGAAGAGGGCAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAGGAATCAGAAGAGGCGAGATGAGAAGGAGGAACCGCAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaagcagtgtataccatgttttgttatgggacggctttttgctg Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctgaagcattctatttgcctcacattttcttcttaactttagCATCAACCCCACAAAGAACTTGAGAGAGTTGACCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCTGAGCCAGAACAAGAAGAGGGCAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAGGAATCAGAAGAGGCGAGATGAGAAGGAGGAACCGCAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaagcagtgtataccatgttttgttatgggacggctttttgctg Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctgaagcattctatttgcctcacattttcttcttaactttagCATCAACCCCACAAAGAACTTGAGAGAGTTGACCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCTGAGCCAGAACAAGAAGAGGGCAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAGGAATCAGAAGAGGCGAGATGAGAAGGAGGAACCGCAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaagcagtgtataccatgttttgttatgggacggctttttgctg Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctgaagcattctatttgcctcacattttcttcttaactttagCATCAACCCCACAAAGAACTTGAGAGAGTTGACCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCTGAGCCAGAACAAGAAGAGGGCAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAGGAATCAGAAGAGGCGAGATGAGAAGGAGGAACCGCAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaagcagtgtataccatgttttgttatgggacggctttttgctg Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gaggagtgctgaagcattctatttgcctcacattttcttcttaactttagCATCAACCCCACAAAGAACTTGAGAGAGTTGACCCTCCTTCCAGGTGATACTGGGAGGCAAGATGTTTCCCCCCCTGCCCCTGAGCCAGAACAAGAAGAGGGCAGTGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAGGAATCAGAAGAGGCGAGATGAGAAGGAGGAACCGCAGAAGTCACAGAGGGGTGGGAGAGGAAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaagcagtgtataccatgttttgttatgggacggctttttgctg #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc cgttctatgaaggggtatgcttcagggtatttattttttattattcacagGAAGCTGGGGAGCTGTATAACCGCATGATCAGACGGTGCCAGGAGAAGGATGTGGTCTGTATTAAATATGGTACCTTTGGGTTGGGAAGGAGCCAGACAGGCGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGAGCTTGCCAGTCAAGGAAcgtaagcttctcttgaactaaccaatcttcgtgacctagcacctgatccca Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAG---GCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc cgttctatgaaggggtatgcttcagggtatttattttttattattcacagGAAGCTGGGGAGCTGTATAACCGCATGATCAGACGGTGC---CAGGAGAAGGATGTGGTCTGTATTAAATATGGTACCTTTGGGTTGGGAAGGAGCCAGACAGGCGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGAGCTTGCCAGTCAAGGAAcgtaagcttctcttgaactaaccaatcttcgtgacctagcacctgatccca Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC cgttctatgaaggggtatgcttcagggtatttattttttattattcacagGAAGCTGGGGAGCTGTATAACCGCATGATCAGACGGTGCCAGGAGAAGGATGTGGTCTGTATTAAATATGGTACCTTTGGGTTGGGAAGGAGCCAGACAGGCGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGAGCTTGCCAGTCAAGGAACgtaagcttctcttgaactaaccaatcttcgtgacctagcacctgatccca Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC cgttctatgaaggggtatgcttcagggtatttattttttattattcacagGAAGCTGGGGAGCTGTATAACCGCATGATCAGACGGTGCCAGGAGAAGGATGTGGTCTGTATTAAATATGGTACCTTTGGGTTGGGAAGGAGCCAGACAGGCGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGAGCTTGCCAGTCAAGGAACgtaagcttctcttgaactaaccaatcttcgtgacctagcacctgatccca Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCT---GTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC cgttctatgaaggggtatgcttcagggtatttattttttattattcacagGAAGCTGGGGAGCTGTATAACCGCATGATCAGACGGT---GCCAGGAGAAGGATGTGGTCTGTATTAAATATGGTACCTTTGGGTTGGGAAGGAGCCAGACAGGCGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGAGCTTGCCAGTCAAGGAACgtaagcttctcttgaactaaccaatcttcgtgacctagcacctgatccca Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC cgttctatgaaggggtatgcttcagggtatttattttttattattcacagGAAGCTGGGGAGCTGTATAACCGCATGATCAGACGGTGCCAGGAGAAGGATGTGGTCTGTATTAAATATGGTACCTTTGGGTTGGGAAGGAGCCAGACAGGCGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGAGCTTGCCAGTCAAGGAACgtaagcttctcttgaactaaccaatcttcgtgacctagcacctgatccca Alignment from Exonerate_coding2genome cgttctatgaaggggtatgcttcagggtatttattttttattattcacaggaagctggggagctgtataaccgcatgatcagacggtgccaggagaaggatgtggtctgtattaaatatggtacctttgggttgggaaggagccagacaggcgctggggtgagtcactatgtcctacagcgagcaccagagagcttgccagtcaaggaacgtaagcttctcttgaactaaccaatcttcgtgacctagcacctgatccca Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC cgttctatgaaggggtatgcttcagggtatttattttttattattcacagGAAGCTGGGGAGCTGTATAACCGCATGATCAGACGGTGCCAGGAGAAGGATGTGGTCTGTATTAAATATGGTACCTTTGGGTTGGGAAGGAGCCAGACAGGCGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGAGCTTGCCAGTCAAGGAACgtaagcttctcttgaactaaccaatcttcgtgacctagcacctgatccca #### Pdcd1lg2_ID6280_2 --> 2 - 1 Original Alignment ctTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAg atcataacatagtttagcccaaattaatctcttctgtgcggtatgtacagccCTATTCACTGTCACAGCCCCCAAAGAAGTGTTTACTGTAGATGTTGGCAGCAGTACCAGCCTGGAGTGTGATTTTGACAAAAAGGAATGCACTGAAGTAGAGGGAATAAGAGCTAGCTTGAAGAAGGTTGAGAATGATACATCTCTACAAAGTGAAAGAGCAACCTTGCTTGAGGAACATTTACCCCTTGGAAAGGCACTCTTCCACATCCCTAGTGCCCAGGTGAGAGACTCTGGGCTATACCACTGCCTTGTCATT---TGTGCTGCATGGGAATTTAAGTATTTGACAGTAAAGGTTAAAagtcagtctttgtgtccatttgaactagtgttcaaacagtcacagcaggcc Alignment from CESAR ctTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAg atcataacatagtttagcccaaattaatctcttctgtgcggtatgtacagccCTATTCACTGTCACAGCCCCCAAAGAAGTGTTTACTGTAGATGTTGGCAGCAGTACCAGCCTGGAGTGTGATTTTGACAAAAAGGAATGCACTGAAGTAGAGGGAATAAGAGCTAGCTTGAAGAAGGTTGAGAATGATACATCTCTACAAAGTGAAAGAGCAACCTTGCTTGAGGAACATTTACCCCTTGGAAAGGCACTCTTCCACATCCCTAGTGCCCAGGTGAGAGACTCTGGGCTATACCACTGCCTTGTCATTTGT---GCTGCATGGGAATTTAAGTATTTGACAGTAAAGGTTAAAagtcagtctttgtgtccatttgaactagtgttcaaacagtcacagcaggcc Alignment from Spaln_aa2Genome CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG atcataacatagtttagcccaaattaatctcttctgtgcggtatgtacagCCCTATTCACTGTCACAGCCCCCAAAGAAGTGTTTACTGTAGATGTTGGCAGCAGTACCAGCCTGGAGTGTGATTTTGACAAAAAGGAATGCACTGAAGTAGAGGGAATAAGAGCTAGCTTGAAGAAGGTTGAGAATGATACATCTCTACAAAGTGAAAGAGCAACCTTGCTTGAGGAACATTTACCCCTTGGAAAGGCACTCTTCCACATCCCTAGTGCCCAGGTGAGAGACTCTGGGCTATACCACTGCCTTGTCATTTGT---GCTGCATGGGAATTTAAGTATTTGACAGTAAAGGTTAAAAgtcagtctttgtgtccatttgaactagtgttcaaacagtcacagcaggcc Alignment from Spaln_nt2Genome CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG atcataacatagtttagcccaaattaatctcttctgtgcggtatgtacagCCCTATTCACTGTCACAGCCCCCAAAGAAGTGTTTACTGTAGATGTTGGCAGCAGTACCAGCCTGGAGTGTGATTTTGACAAAAAGGAATGCACTGAAGTAGAGGGAATAAGAGCTAGCTTGAAGAAGGTTGAGAATGATACATCTCTACAAAGTGAAAGAGCAACCTTGCTTGAGGAACATTTACCCCTTGGAAAGGCACTCTTCCACATCCCTAGTGCCCAGGTGAGAGACTCTGGGCTATACCACTGCCTTGTCATTT---GTGCTGCATGGGAATTTAAGTATTTGACAGTAAAGGTTAAAAgtcagtctttgtgtccatttgaactagtgttcaaacagtcacagcaggcc Alignment from Pairagon ------------------------------CAGCTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG atcataacatagtttagCCCAAATTAATCTCTTCTGTGCGGTATGTACAGCCCTATTCACTGTCACAGCCCCCAAAGAAGTGTTTACTGTAGATGTTGGCAGCAGTACCAGCCTGGAGTGTGATTTTGACAAAAAGGAATGCACTGAAGTAGAGGGAATAAGAGCTAGCTTGAAGAAGGTTGAGAATGATACATCTCTACAAAGTGAAAGAGCAACCTTGCTTGAGGAACATTTACCCCTTGGAAAGGCACTCTTCCACATCCCTAGTGCCCAGGTGAGAGACTCTGGGCTATACCACTGCCTTGTCATTTGT---GCTGCATGGGAATTTAAGTATTTGACAGTAAAGGTTAAAAgtcagtctttgtgtccatttgaactagtgttcaaacagtcacagcaggcc Alignment from Exonerate_protein2genome CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG atcataacatagtttagcccaaattaatctcttctgtgcggtatgtacagCCCTATTCACTGTCACAGCCCCCAAAGAAGTGTTTACTGTAGATGTTGGCAGCAGTACCAGCCTGGAGTGTGATTTTGACAAAAAGGAATGCACTGAAGTAGAGGGAATAAGAGCTAGCTTGAAGAAGGTTGAGAATGATACATCTCTACAAAGTGAAAGAGCAACCTTGCTTGAGGAACATTTACCCCTTGGAAAGGCACTCTTCCACATCCCTAGTGCCCAGGTGAGAGACTCTGGGCTATACCACTGCCTTGTCATTTGT---GCTGCATGGGAATTTAAGTATTTGACAGTAAAGGTTAAAAgtcagtctttgtgtccatttgaactagtgttcaaacagtcacagcaggcc Alignment from Exonerate_coding2genome GCAGCTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG atcataacatagtttagcccaaattaatctcttctgtgcggtatgtACAGCCCTATTCACTGTCACAGCCCCCAAAGAAGTGTTTACTGTAGATGTTGGCAGCAGTACCAGCCTGGAGTGTGATTTTGACAAAAAGGAATGCACTGAAGTAGAGGGAATAAGAGCTAGCTTGAAGAAGGTTGAGAATGATACATCTCTACAAAGTGAAAGAGCAACCTTGCTTGAGGAACATTTACCCCTTGGAAAGGCACTCTTCCACATCCCTAGTGCCCAGGTGAGAGACTCTGGGCTATACCACTGCCTTGTCATTTGT---GCTGCATGGGAATTTAAGTATTTGACAGTAAAGGTTAAAAgtcagtctttgtgtccatttgaactagtgttcaaacagtcacagcaggcc Alignment from GeneWise GCTCCTGCTGCCGATACTGAACCTGAGCTTACAACTTCATCCTGTAGCAGCTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG ----------AGTTTAGCCCAAATTAATCTCTTCTGTGCGGTATGTACAGCCCTATTCACTGTCACAGCCCCCAAAGAAGTGTTTACTGTAGATGTTGGCAGCAGTACCAGCCTGGAGTGTGATTTTGACAAAAAGGAATGCACTGAAGTAGAGGGAATAAGAGCTAGCTTGAAGAAGGTTGAGAATGATACATCTCTACAAAGTGAAAGAGCAACCTTGCTTGAGGAACATTTACCCCTTGGAAAGGCACTCTTCCACATCCCTAGTGCCCAGGTGAGAGACTCTGGGCTATACCACTGCCTTGTCATTTGT---GCTGCATGGGAATTTAAGTATTTGACAGTAAAGGTTAAAAgtcagtctttgtgtccatttgaactagtgttcaaacagtcacagcaggcc #### Pdcd4_ID11398_5 --> 0 - 0 Original Alignment GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG tgttgcatgccaatacattataaagtcctgacccccagatcctctgacagGAGATGTTAAGAGACTTGAATCTTGGTGAGATGAAGAGTGGTGTCCCCGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGCAATGAGCACAAATGACATTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTGGCCTTGGACACCCCTAGAGCACCCCAAgtaagggccatatccctttcagcatttatgtgtggacacagacataagcc Alignment from CESAR GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG tgttgcatgccaatacattataaagtcctgacccccagatcctctgacagGAGATGTTAAGAGACTTGAATCTTGGTGAGATGAAGAGTGGTGTCCCCGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGCAATGAGCACAAATGACATTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTGGCCTTGGACACCCCTAGAGCACCCCAAgtaagggccatatccctttcagcatttatgtgtggacacagacataagcc Alignment from Spaln_aa2Genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG tgttgcatgccaatacattataaagtcctgacccccagatcctctgacagGAGATGTTAAGAGACTTGAATCTTGGTGAGATGAAGAGTGGTGTCCCCGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGCAATGAGCACAAATGACATTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTGGCCTTGGACACCCCTAGAGCACCCCAAgtaagggccatatccctttcagcatttatgtgtggacacagacataagcc Alignment from Spaln_nt2Genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG tgttgcatgccaatacattataaagtcctgacccccagatcctctgacagGAGATGTTAAGAGACTTGAATCTTGGTGAGATGAAGAGTGGTGTCCCCGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGCAATGAGCACAAATGACATTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTGGCCTTGGACACCCCTAGAGCACCCCAAgtaagggccatatccctttcagcatttatgtgtggacacagacataagcc Alignment from Pairagon GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG tgttgcatgccaatacattataaagtcctgacccccagatcctctgacagGAGATGTTAAGAGACTTGAATCTTGGTGAGATGAAGAGTGGTGTCCCCGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGCAATGAGCACAAATGACATTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTGGCCTTGGACACCCCTAGAGCACCCCAAgtaagggccatatccctttcagcatttatgtgtggacacagacataagcc Alignment from Exonerate_protein2genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG tgttgcatgccaatacattataaagtcctgacccccagatcctctgacagGAGATGTTAAGAGACTTGAATCTTGGTGAGATGAAGAGTGGTGTCCCCGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGCAATGAGCACAAATGACATTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTGGCCTTGGACACCCCTAGAGCACCCCAAgtaagggccatatccctttcagcatttatgtgtggacacagacataagcc Alignment from Exonerate_coding2genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG tgttgcatgccaatacattataaagtcctgacccccagatcctctgacagGAGATGTTAAGAGACTTGAATCTTGGTGAGATGAAGAGTGGTGTCCCCGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGCAATGAGCACAAATGACATTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTGGCCTTGGACACCCCTAGAGCACCCCAAgtaagggccatatccctttcagcatttatgtgtggacacagacataagcc Alignment from GeneWise GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG tgttgcatgccaatacattataaagtcctgacccccagatcctctgacagGAGATGTTAAGAGACTTGAATCTTGGTGAGATGAAGAGTGGTGTCCCCGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGCAATGAGCACAAATGACATTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTGGCCTTGGACACCCCTAGAGCACCCCAAgtaagggccatatccctttcagcatttatgtgtggacacagacataagcc #### Pdcd4_ID11401_8 --> 0 - 0 Original Alignment ATTGATATGCTGCTTAAAGAGTATTTACTCTCTGGAGATATATCTGAAGCTGAACACTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCACGAGCTTGTATATGAA agtatgttttttgaagaattgagcaaagtggccttcctctgcctccctagATTGATATGCTGCTTAAAGAATATTTACTACCTGGGGATATCTCTGAAGCTGAACATTGCCTTAAGGAACTAGAAGTACCACGTTTTCACCATGAACTTGTATATGAAgtgagtttgccctctgacctaagcctaagattaccacagagtataagtca Alignment from CESAR ATTGATATGCTGCTTAAAGAGTATTTACTCTCTGGAGATATATCTGAAGCTGAACACTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCACGAGCTTGTATATGAA agtatgttttttgaagaattgagcaaagtggccttcctctgcctccctagATTGATATGCTGCTTAAAGAATATTTACTACCTGGGGATATCTCTGAAGCTGAACATTGCCTTAAGGAACTAGAAGTACCACGTTTTCACCATGAACTTGTATATGAAgtgagtttgccctctgacctaagcctaagattaccacagagtataagtca Alignment from Spaln_aa2Genome ATTGATATGCTGCTTAAAGAGTATTTACTCTCTGGAGATATATCTGAAGCTGAACACTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCACGAGCTTGTATATGAA agtatgttttttgaagaattgagcaaagtggccttcctctgcctccctagATTGATATGCTGCTTAAAGAATATTTACTACCTGGGGATATCTCTGAAGCTGAACATTGCCTTAAGGAACTAGAAGTACCACGTTTTCACCATGAACTTGTATATGAAgtgagtttgccctctgacctaagcctaagattaccacagagtataagtca Alignment from Spaln_nt2Genome ATTGATATGCTGCTTAAAGAGTATTTACTCTCTGGAGATATATCTGAAGCTGAACACTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCACGAGCTTGTATATGAA agtatgttttttgaagaattgagcaaagtggccttcctctgcctccctagATTGATATGCTGCTTAAAGAATATTTACTACCTGGGGATATCTCTGAAGCTGAACATTGCCTTAAGGAACTAGAAGTACCACGTTTTCACCATGAACTTGTATATGAAgtgagtttgccctctgacctaagcctaagattaccacagagtataagtca Alignment from Pairagon ATTGATATGCTGCTTAAAGAGTATTTACTCTCTGGAGATATATCTGAAGCTGAACACTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCACGAGCTTGTATATGAA agtatgttttttgaagaattgagcaaagtggccttcctctgcctccctagATTGATATGCTGCTTAAAGAATATTTACTACCTGGGGATATCTCTGAAGCTGAACATTGCCTTAAGGAACTAGAAGTACCACGTTTTCACCATGAACTTGTATATGAAgtgagtttgccctctgacctaagcctaagattaccacagagtataagtca Alignment from Exonerate_protein2genome ATTGATATGCTGCTTAAAGAGTATTTACTCTCTGGAGATATATCTGAAGCTGAACACTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCACGAGCTTGTATATGAA agtatgttttttgaagaattgagcaaagtggccttcctctgcctccctagATTGATATGCTGCTTAAAGAATATTTACTACCTGGGGATATCTCTGAAGCTGAACATTGCCTTAAGGAACTAGAAGTACCACGTTTTCACCATGAACTTGTATATGAAgtgagtttgccctctgacctaagcctaagattaccacagagtataagtca Alignment from Exonerate_coding2genome ATTGATATGCTGCTTAAAGAGTATTTACTCTCTGGAGATATATCTGAAGCTGAACACTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCACGAGCTTGTATATGAA agtatgttttttgaagaattgagcaaagtggccttcctctgcctccctagATTGATATGCTGCTTAAAGAATATTTACTACCTGGGGATATCTCTGAAGCTGAACATTGCCTTAAGGAACTAGAAGTACCACGTTTTCACCATGAACTTGTATATGAAgtgagtttgccctctgacctaagcctaagattaccacagagtataagtca Alignment from GeneWise ATTGATATGCTGCTTAAAGAGTATTTACTCTCTGGAGATATATCTGAAGCTGAACACTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCACGAGCTTGTATATGAA agtatgttttttgaagaattgagcaaagtggccttcctctgcctccctagATTGATATGCTGCTTAAAGAATATTTACTACCTGGGGATATCTCTGAAGCTGAACATTGCCTTAAGGAACTAGAAGTACCACGTTTTCACCATGAACTTGTATATGAAgtgagtttgccctctgacctaagcctaagattaccacagagtataagtca #### Pde6c_ID7535_5 --> 0 - 0 Original Alignment GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG cagtagtacagagttcagtctggttgcaccatattttgtttgtggctcagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAGGGACCCAAGACTTCAGATGGCCAGgtaagcgctctgaaaggttagattaaggtgttttacatggtgaccaggac Alignment from CESAR GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG cagtagtacagagttcagtctggttgcaccatattttgtttgtggctcagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAGGGACCCAAGACTTCAGATGGCCAGgtaagcgctctgaaaggttagattaaggtgttttacatggtgaccaggac Alignment from Spaln_aa2Genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG cagtagtacagagttcagtctggttgcaccatattttgtttgtggctcagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAGGGACCCAAGACTTCAGATGGCCAGgtaagcgctctgaaaggttagattaaggtgttttacatggtgaccaggac Alignment from Spaln_nt2Genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG cagtagtacagagttcagtctggttgcaccatattttgtttgtggctcagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAGGGACCCAAGACTTCAGATGGCCAGgtaagcgctctgaaaggttagattaaggtgttttacatggtgaccaggac Alignment from Pairagon GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG cagtagtacagagttcagtctggttgcaccatattttgtttgtggctcagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAGGGACCCAAGACTTCAGATGGCCAGgtaagcgctctgaaaggttagattaaggtgttttacatggtgaccaggac Alignment from Exonerate_protein2genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG cagtagtacagagttcagtctggttgcaccatattttgtttgtggctcagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAGGGACCCAAGACTTCAGATGGCCAGgtaagcgctctgaaaggttagattaaggtgttttacatggtgaccaggac Alignment from Exonerate_coding2genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGGGAAATCATCTTCTATAAAATCATCGAT cagtagtacagagttcagtctggttgcaccatattttgtttgtggctcagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAGGGACCCAAGACTTCAGATGGCCAGGTAAGCGCTCTGAAAGGTTAGATTAAGgtgttttacatggtgaccaggac Alignment from GeneWise GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG cagtagtacagagttcagtctggttgcaccatattttgtttgtggctcagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAGGGACCCAAGACTTCAGATGGCCAGgtaagcgctctgaaaggttagattaaggtgttttacatggtgaccaggac #### Pde6c_ID7539_9 --> 0 - 0 Original Alignment AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG gaattgattggtatgcacattcttatgcagttttcctttcctctttgtagAAAGGTTCAGTGGATGAAACAGGGTGGGTCATTAAGAATGTATTGTCCCTACCTATTGTCAATAAGAAAGAAGAGATT---GGTGTAGCTTCATTTTACAATCGAAAAGATGGCAAGCCTTTTGATGAACATGATGAGCATATCACTGAGgtgagtgtggcgggctattgcatctgtgcaaataataaacaaacttttgc Alignment from CESAR AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG gaattgattggtatgcacattcttatgcagttttcctttcctctttgtagAAAGGTTCAGTGGATGAAACAGGGTGGGTCATTAAGAATGTATTGTCCCTACCTATTGTCAATAAGAAAGAAGAGATT---GGTGTAGCTTCATTTTACAATCGAAAAGATGGCAAGCCTTTTGATGAACATGATGAGCATATCACTGAGgtgagtgtggcgggctattgcatctgtgcaaataataaacaaacttttgc Alignment from Spaln_aa2Genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG gaattgattggtatgcacattcttatgcagttttcctttcctctttgtagAAAGGTTCAGTGGATGAAACAGGGTGGGTCATTAAGAATGTATTGTCCCTACCTATTGTCAATAAGAAAGAAGAG---ATTGGTGTAGCTTCATTTTACAATCGAAAAGATGGCAAGCCTTTTGATGAACATGATGAGCATATCACTGAGgtgagtgtggcgggctattgcatctgtgcaaataataaacaaacttttgc Alignment from Spaln_nt2Genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG gaattgattggtatgcacattcttatgcagttttcctttcctctttgtagAAAGGTTCAGTGGATGAAACAGGGTGGGTCATTAAGAATGTATTGTCCCTACCTATTGTCAATAAGAAAGAAGAGA---TTGGTGTAGCTTCATTTTACAATCGAAAAGATGGCAAGCCTTTTGATGAACATGATGAGCATATCACTGAGgtgagtgtggcgggctattgcatctgtgcaaataataaacaaacttttgc Alignment from Pairagon AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG gaattgattggtatgcacattcttatgcagttttcctttcctctttgtagAAAGGTTCAGTGGATGAAACAGGGTGGGTCATTAAGAATGTATTGTCCCTACCTATTGTCAATAAGAAAGAAGAGATT---GGTGTAGCTTCATTTTACAATCGAAAAGATGGCAAGCCTTTTGATGAACATGATGAGCATATCACTGAGgtgagtgtggcgggctattgcatctgtgcaaataataaacaaacttttgc Alignment from Exonerate_protein2genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG gaattgattggtatgcacattcttatgcagttttcctttcctctttgtagAAAGGTTCAGTGGATGAAACAGGGTGGGTCATTAAGAATGTATTGTCCCTACCTATTGTCAATAAGAAAGAAGAGATT---GGTGTAGCTTCATTTTACAATCGAAAAGATGGCAAGCCTTTTGATGAACATGATGAGCATATCACTGAGgtgagtgtggcgggctattgcatctgtgcaaataataaacaaacttttgc Alignment from Exonerate_coding2genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG gaattgattggtatgcacattcttatgcagttttcctttcctctttgtagAAAGGTTCAGTGGATGAAACAGGGTGGGTCATTAAGAATGTATTGTCCCTACCTATTGTCAATAAGAAAGAAGAGATT---GGTGTAGCTTCATTTTACAATCGAAAAGATGGCAAGCCTTTTGATGAACATGATGAGCATATCACTGAGgtgagtgtggcgggctattgcatctgtgcaaataataaacaaacttttgc Alignment from GeneWise AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG gaattgattggtatgcacattcttatgcagttttcctttcctctttgtagAAAGGTTCAGTGGATGAAACAGGGTGGGTCATTAAGAATGTATTGTCCCTACCTATTGTCAATAAGAAAGAAGAGATT---GGTGTAGCTTCATTTTACAATCGAAAAGATGGCAAGCCTTTTGATGAACATGATGAGCATATCACTGAGgtgagtgtggcgggctattgcatctgtgcaaataataaacaaacttttgc #### Pde6c_ID7544_14 --> 0 - 2 Original Alignment ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGaa ctgtctgttgtgaataactgtaagtgatcattcataagtttcacccacagACAGGGAGATTAAAAAAATACTACACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACCTGTACCAAATGcagtatgaactgactagtacactatatagagtttgctgccaagttcagacac Alignment from CESAR ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGaa ctgtctgttgtgaataactgtaagtgatcattcataagtttcacccacagACAGGGAGATTAAAAAAATACTACACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACCTGTACCAAATGcagtatgaactgactagtacactatatagagtttgctgccaagttcagacac Alignment from Spaln_aa2Genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgtctgttgtgaataactgtaagtgatcattcataagtttcacccacagACAGGGAGATTAAAAAAATACTACACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACCTGTACCAAATGCAgtatgaactgactagtacactatatagagtttgctgccaagttcagacac Alignment from Spaln_nt2Genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgtctgttgtgaataactgtaagtgatcattcataagtttcacccacagACAGGGAGATTAAAAAAATACTACACAGACCTTGAAGCTT---------TCACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACCTGTACCAAATGCAgtatgaactgactagtacactatatagagtttgctgccaagttcagacac Alignment from Pairagon ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgtctgttgtgaataactgtaagtgatcattcataagtttcacccacagACAGGGAGATTAAAAAAATACTACACAGACCTTGAAGCTT---------TCACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACCTGTACCAAATGCAgtatgaactgactagtacactatatagagtttgctgccaagttcagacac Alignment from Exonerate_protein2genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgtctgttgtgaataactgtaagtgatcattcataagtttcacccacagACAGGGAGATTAAAAAAATACTACACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACCTGTACCAAATGCAgtatgaactgactagtacactatatagagtttgctgccaagttcagacac Alignment from Exonerate_coding2genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgtctgttgtgaataactgtaagtgatcattcataagtttcacccacagACAGGGAGATTAAAAAAATACTACACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACCTGTACCAAATGCAgtatgaactgactagtacactatatagagtttgctgccaagttcagacac Alignment from GeneWise ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgtctgttgtgaataactgtaagtgatcattcataagtttcacccacagACAGGGAGATTAAAAAAATACTACACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACCTGTACCAAATGCAgtatgaactgactagtacactatatagagtttgctgccaagttcagacac #### Pde6c_ID7548_18 --> 1 - 0 Original Alignment gGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cattagtagtaatcctttattcctctttcacgttgttgcttttgttacaggACCATAATGATGACTGCCTGTGAC---TTTGCTATT------CCATGGGAGGTACAAAGTCAAgtgagcctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from CESAR gGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cattagtagtaatcctttattcctctttcacgttgttgcttttgttacaggACCATAATGATGACTGCCTGTGACTTT---GCTATT------CCATGGGAGGTACAAAGTCAAgtgagcctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from Spaln_aa2Genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cattagtagtaatcctttattcctctttcacgttgttgcttttgttacagGACCATAATGATGACTGCCTGTGACTTTGCTATT---------CCATGGGAGGTACAAAGTCAAgtgagcctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from Spaln_nt2Genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cattagtagtaatcctttattcctctttcacgttgttgcttttgttacagGACCATAATGATGACTGCCTGTGAC---TTTGCTAT------TCCATGGGAGGTACAAAGTCAAgtgagcctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from Pairagon GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cattagtagtaatcctttattcctctttcacgttgttgcttttgttacagGACCATAATGATGACTGCCTGTGAC---TTTGCTATT------CCATGGGAGGTACAAAGTCAAgtgagcctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from Exonerate_protein2genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cattagtagtaatcctttattcctctttcacgttgttgcttttgttacagGACCATAATGATGACTGCCTGTGACTTTGCTATT---------CCATGGGAGGTACAAAGTCAAgtgagcctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from Exonerate_coding2genome cattagtagtaatcctttattcctctttcacgttgttgcttttgttacaggaccataatgatgactgcctgtgactttgctattccatgggaggtacaaagtcaagtgagcctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from GeneWise GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cattagtagtaatcctttattcctctttcacgttgttgcttttgttacagGACCATAATGATGACTGCCTGTGACTTTGCTATT---------CCATGGGAGGTACAAAGTCAAgtgagcctcacaatctattttcccaagctagtcataacacccatctaaac #### Pde6c_ID7551_21 --> 0 - 1 Original Alignment GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGA---AAGCAGGAAGAAGAAGCCTCAGATGGAAAAg tggtacccgcctgaataccaggtgacaattaactattgtttcttcctcagGAATATTCTCGGTTTCATGGAGAAATCACACCAACGCTAAATGGGCTGAAAAATAATAGGGTGGAG------TCCCTTGCACAGGTGTTTGAAGCAAGGGTCAAAGTTACGGAGGCAGGGACAGGAAGAAAGCAGGATGAAGAGGCTTCAGATGGGAAAggtaagacaagtgctctagggattcatgtatgggtgcaaaggttaagagac Alignment from CESAR GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGA---AAGCAGGAAGAAGAAGCCTCAGATGGAAAAg tggtacccgcctgaataccaggtgacaattaactattgtttcttcctcagGAATATTCTCGGTTTCATGGAGAAATCACACCAACGCTAAATGGGCTGAAAAATAATAGGGTGGAG------TCCCTTGCACAGGTGTTTGAAGCAAGGGTCAAAGTTACGGAGGCAGGGACAGGAAGAAAGCAGGATGAAGAGGCTTCAGATGGGAAAggtaagacaagtgctctagggattcatgtatgggtgcaaaggttaagagac Alignment from Spaln_aa2Genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAG---CAGGAAGAAGAAGCCTCAGATGGAAAAG tggtacccgcctgaataccaggtgacaattaactattgtttcttcctcagGAATATTCTCGGTTTCATGGAGAAATCACACCAACGCTAAATGGGCTGAAAAATAATAGGGTGGAG------TCCCTTGCACAGGTGTTTGAAGCAAGGGTCAAAGTTACGGAGGCAGGGACAGGAAGAAAGCAGGATGAAGAGGCTTCAGATGGGAAAGgtaagacaagtgctctagggattcatgtatgggtgcaaaggttaagagac Alignment from Spaln_nt2Genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAA---AGCAGGAAGAAGAAGCCTCAGATGGAAAAG tggtacccgcctgaataccaggtgacaattaactattgtttcttcctcagGAATATTCTCGGTTTCATGGAGAAATCACACCAACGCTAAATGGGCTGAAAAATAATAGGGTGG------AGTCCCTTGCACAGGTGTTTGAAGCAAGGGTCAAAGTTACGGAGGCAGGGACAGGAAGAAAGCAGGATGAAGAGGCTTCAGATGGGAAAGgtaagacaagtgctctagggattcatgtatgggtgcaaaggttaagagac Alignment from Pairagon GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAAT--------------------------------------------------GGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG tggtacccgcctgaataccaggtgacaattaactattgtttcttcctcagGAATATTCTCGGTTTCATGGAGAAATCACACCAACGCTAAATGGGCTGAAAAATAATAGGGTGGAGTCCCTTGCACAGGTGTTTGAAGCAAGGGTCAAAGTTACGGAGGCAGGGACAGGAA-----------------------------------------------------GAAAGCAGGATGAAGAGGCTTCAGATGGGAAAGgtaagacaagtgctctagggattcatgtatgggtgcaaaggttaagagac Alignment from Exonerate_protein2genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGA---AAGCAGGAAGAAGAAGCCTCAGATGGAAAAG tggtacccgcctgaataccaggtgacaattaactattgtttcttcctcagGAATATTCTCGGTTTCATGGAGAAATCACACCAACGCTAAATGGGCTGAAAAATAATAGGGTGGAG------TCCCTTGCACAGGTGTTTGAAGCAAGGGTCAAAGTTACGGAGGCAGGGACAGGAAGAAAGCAGGATGAAGAGGCTTCAGATGGGAAAGgtaagacaagtgctctagggattcatgtatgggtgcaaaggttaagagac Alignment from Exonerate_coding2genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGA---AAGCAGGAAGAAGAAGCCTCAGATGGAAAAGCTGCCACAGATTTAGGAGGC tggtacccgcctgaataccaggtgacaattaactattgtttcttcctcagGAATATTCTCGGTTTCATGGAGAAATCACACCAACGCTAAATGGGCTGAAAAATAATAGGGTGGAG------TCCCTTGCACAGGTGTTTGAAGCAAGGGTCAAAGTTACGGAGGCAGGGACAGGAAGAAAGCAGGATGAAGAGGCTTCAGATGGGAAAGGTAAGACAAGTGCTCTAGGGattcatgtatgggtgcaaaggttaagagac Alignment from GeneWise GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGA---AAGCAGGAAGAAGAAGCCTCAGATGGAAAAG tggtacccgcctgaataccaggtgacaattaactattgtttcttcctcagGAATATTCTCGGTTTCATGGAGAAATCACACCAACGCTAAATGGGCTGAAAAATAATAGGGTGGAG------TCCCTTGCACAGGTGTTTGAAGCAAGGGTCAAAGTTACGGAGGCAGGGACAGGAAGAAAGCAGGATGAAGAGGCTTCAGATGGGAAAGgtaagacaagtgctctagggattcatgtatgggtgcaaaggttaagagac #### Peli3_ID759_3 --> 0 - 0 Original Alignment GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tgctaataaacctcccaatctaatacatcttgtgtctccttgttacacagGCTGTAAGTAACAGGGGTCAACACAGCATCTCGTTCACACTGTCTAAAAGTCATGCAGTTATAGTAGAT---GCACATGACAGTGACAAGGATATGTTTCAAgtacgtcttacagcaaaactggagtccagagttgacacttaggaacccac Alignment from CESAR GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tgctaataaacctcccaatctaatacatcttgtgtctccttgttacacagGCTGTAAGTAACAGGGGTCAACACAGCATCTCGTTCACACTGTCTAAAAGTCATGCAGTTATAGTAGAT---GCACATGACAGTGACAAGGATATGTTTCAAgtacgtcttacagcaaaactggagtccagagttgacacttaggaacccac Alignment from Spaln_aa2Genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tgctaataaacctcccaatctaatacatcttgtgtctccttgttacacagGCTGTAAGTAACAGGGGTCAACACAGCATCTCGTTCACACTGTCTAAAAGTCATGCAGTTATAGTAGAT---GCACATGACAGTGACAAGGATATGTTTCAAgtacgtcttacagcaaaactggagtccagagttgacacttaggaacccac Alignment from Spaln_nt2Genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tgctaataaacctcccaatctaatacatcttgtgtctccttgttacacagGCTGTAAGTAACAGGGGTCAACACAGCATCTCGTTCACACTGTCTAAAAGTCATGCAGTTATAGTAG---ATGCACATGACAGTGACAAGGATATGTTTCAAgtacgtcttacagcaaaactggagtccagagttgacacttaggaacccac Alignment from Pairagon GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tgctaataaacctcccaatctaatacatcttgtgtctccttgttacacagGCTGTAAGTAACAGGGGTCAACACAGCATCTCGTTCACACTGTCTAAAAGTCATGCAGTTATAGTAG---ATGCACATGACAGTGACAAGGATATGTTTCAAgtacgtcttacagcaaaactggagtccagagttgacacttaggaacccac Alignment from Exonerate_protein2genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tgctaataaacctcccaatctaatacatcttgtgtctccttgttacacagGCTGTAAGTAACAGGGGTCAACACAGCATCTCGTTCACACTGTCTAAAAGTCATGCAGTTATAGTAGAT---GCACATGACAGTGACAAGGATATGTTTCAAgtacgtcttacagcaaaactggagtccagagttgacacttaggaacccac Alignment from Exonerate_coding2genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tgctaataaacctcccaatctaatacatcttgtgtctccttgttacacagGCTGTAAGTAACAGGGGTCAACACAGCATCTCGTTCACACTGTCTAAAAGTCATGCAGTTATAGTAGAT---GCACATGACAGTGACAAGGATATGTTTCAAgtacgtcttacagcaaaactggagtccagagttgacacttaggaacccac Alignment from GeneWise GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tgctaataaacctcccaatctaatacatcttgtgtctccttgttacacagGCTGTAAGTAACAGGGGTCAACACAGCATCTCGTTCACACTGTCTAAAAGTCATGCAGTTATAGTAGAT---GCACATGACAGTGACAAGGATATGTTTCAAgtacgtcttacagcaaaactggagtccagagttgacacttaggaacccac #### Peli3_ID760_2 --> 1 - 0 Original Alignment cTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctatgagtgattcagttctccgacatttgttctcttctttcctgtctagtTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCTCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgccttgcgcacacagcaatccaatgtcatcctctctatttattgtc Alignment from CESAR cTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctatgagtgattcagttctccgacatttgttctcttctttcctgtctagtTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCTCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgccttgcgcacacagcaatccaatgtcatcctctctatttattgtc Alignment from Spaln_aa2Genome CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctatgagtgattcagttctccgacatttgttctcttctttcctgtctagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCTCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgccttgcgcacacagcaatccaatgtcatcctctctatttattgtc Alignment from Spaln_nt2Genome CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctatgagtgattcagttctccgacatttgttctcttctttcctgtctagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCTCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgccttgcgcacacagcaatccaatgtcatcctctctatttattgtc Alignment from Pairagon CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctatgagtgattcagttctccgacatttgttctcttctttcctgtctagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCTCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgccttgcgcacacagcaatccaatgtcatcctctctatttattgtc Alignment from Exonerate_protein2genome CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctatgagtgattcagttctccgacatttgttctcttctttcctgtctagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCTCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgccttgcgcacacagcaatccaatgtcatcctctctatttattgtc Alignment from Exonerate_coding2genome CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctatgagtgattcagttctccgacatttgttctcttctttcctgtctagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCTCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgccttgcgcacacagcaatccaatgtcatcctctctatttattgtc Alignment from GeneWise CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctatgagtgattcagttctccgacatttgttctcttctttcctgtctagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCTCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgccttgcgcacacagcaatccaatgtcatcctctctatttattgtc #### Peo1_ID9267_4 --> 1 - 0 Original Alignment gATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA aatgcgtgtggggaacttgtctagtcaaatccaattctgatcttttccagaATTGCCGCCCAAGAATACATTGTTGGAGCCTGCTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCGAACTTTGCATCCACCAAAgtcagccagcagatcatatactgagcaagatgggggacaagcaagatggg Alignment from CESAR gATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA aatgcgtgtggggaacttgtctagtcaaatccaattctgatcttttccagaATTGCCGCCCAAGAATACATTGTTGGAGCCTGCTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCGAACTTTGCATCCACCAAAgtcagccagcagatcatatactgagcaagatgggggacaagcaagatggg Alignment from Spaln_aa2Genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA aatgcgtgtggggaacttgtctagtcaaatccaattctgatcttttccagAATTGCCGCCCAAGAATACATTGTTGGAGCCTGCTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCGAACTTTGCATCCACCAAAgtcagccagcagatcatatactgagcaagatgggggacaagcaagatggg Alignment from Spaln_nt2Genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA aatgcgtgtggggaacttgtctagtcaaatccaattctgatcttttccagAATTGCCGCCCAAGAATACATTGTTGGAGCCTGCTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCGAACTTTGCATCCACCAAAgtcagccagcagatcatatactgagcaagatgggggacaagcaagatggg Alignment from Pairagon GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA aatgcgtgtggggaacttgtctagtcaaatccaattctgatcttttccagAATTGCCGCCCAAGAATACATTGTTGGAGCCTGCTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCGAACTTTGCATCCACCAAAgtcagccagcagatcatatactgagcaagatgggggacaagcaagatggg Alignment from Exonerate_protein2genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA aatgcgtgtggggaacttgtctagtcaaatccaattctgatcttttccagAATTGCCGCCCAAGAATACATTGTTGGAGCCTGCTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCGAACTTTGCATCCACCAAAgtcagccagcagatcatatactgagcaagatgggggacaagcaagatggg Alignment from Exonerate_coding2genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA aatgcgtgtggggaacttgtctagtcaaatccaattctgatcttttccagAATTGCCGCCCAAGAATACATTGTTGGAGCCTGCTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCGAACTTTGCATCCACCAAAgtcagccagcagatcatatactgagcaagatgggggacaagcaagatggg Alignment from GeneWise GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA aatgcgtgtggggaacttgtctagtcaaatccaattctgatcttttccagAATTGCCGCCCAAGAATACATTGTTGGAGCCTGCTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCGAACTTTGCATCCACCAAAgtcagccagcagatcatatactgagcaagatgggggacaagcaagatggg #### Pga5_ID2972_6 --> 1 - 2 Original Alignment cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag tcatacagtttgaagtaccctggaaatttctttccttcttctggctgtagtAAGGATGAAAAGGGCAGCATATTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCACAGCCGAGTTACTGGCGATTAGCTGCAGATaggtaagtcataggcgcctattgccagtaggtactatcttagaagcatgcag Alignment from CESAR cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag tcatacagtttgaagtaccctggaaatttctttccttcttctggctgtagtAAGGATGAAAAGGGCAGCATATTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCACAGCCGAGTTACTGGCGATTAGCTGCAGATaggtaagtcataggcgcctattgccagtaggtactatcttagaagcatgcag Alignment from Spaln_aa2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggaaatttctttccttcttctggctgtagTAAGGATGAAAAGGGCAGCATATTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCACAGCCGAGTTACTGGCGATTAGCTGCAGATAGgtaagtcataggcgcctattgccagtaggtactatcttagaagcatgcag Alignment from Spaln_nt2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggaaatttctttccttcttctggctgtagTAAGGATGAAAAGGGCAGCATATTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCACAGCCGAGTTACTGGCGATTAGCTGCAGATAGgtaagtcataggcgcctattgccagtaggtactatcttagaagcatgcag Alignment from Pairagon CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggaaatttctttccttcttctggctgtagTAAGGATGAAAAGGGCAGCATATTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCACAGCCGAGTTACTGGCGATTAGCTGCAGATAGgtaagtcataggcgcctattgccagtaggtactatcttagaagcatgcag Alignment from Exonerate_protein2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggaaatttctttccttcttctggctgtagTAAGGATGAAAAGGGCAGCATATTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCACAGCCGAGTTACTGGCGATTAGCTGCAGATAGgtaagtcataggcgcctattgccagtaggtactatcttagaagcatgcag Alignment from Exonerate_coding2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggaaatttctttccttcttctggctgtagTAAGGATGAAAAGGGCAGCATATTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCACAGCCGAGTTACTGGCGATTAGCTGCAGATAGgtaagtcataggcgcctattgccagtaggtactatcttagaagcatgcag Alignment from GeneWise CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggaaatttctttccttcttctggctgtagTAAGGATGAAAAGGGCAGCATATTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCACAGCCGAGTTACTGGCGATTAGCTGCAGATAGgtaagtcataggcgcctattgccagtaggtactatcttagaagcatgcag #### Pi4k2a_ID8400_3 --> 0 - 0 Original Alignment GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG actatcttaggcaagagttggcatacactctctaatctgttgtattacagGTAGTATACCTGGCCAGTGAAACCTTCAATTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAGGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaattagtggagctatggtccatgagaacagtcatatagccagcattgc Alignment from CESAR GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG actatcttaggcaagagttggcatacactctctaatctgttgtattacagGTAGTATACCTGGCCAGTGAAACCTTCAATTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAGGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaattagtggagctatggtccatgagaacagtcatatagccagcattgc Alignment from Spaln_aa2Genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG actatcttaggcaagagttggcatacactctctaatctgttgtattacagGTAGTATACCTGGCCAGTGAAACCTTCAATTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAGGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaattagtggagctatggtccatgagaacagtcatatagccagcattgc Alignment from Spaln_nt2Genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG actatcttaggcaagagttggcatacactctctaatctgttgtattacagGTAGTATACCTGGCCAGTGAAACCTTCAATTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAGGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaattagtggagctatggtccatgagaacagtcatatagccagcattgc Alignment from Pairagon GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG actatcttaggcaagagttggcatacactctctaatctgttgtattacagGTAGTATACCTGGCCAGTGAAACCTTCAATTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAGGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaattagtggagctatggtccatgagaacagtcatatagccagcattgc Alignment from Exonerate_protein2genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG actatcttaggcaagagttggcatacactctctaatctgttgtattacagGTAGTATACCTGGCCAGTGAAACCTTCAATTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAGGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaattagtggagctatggtccatgagaacagtcatatagccagcattgc Alignment from Exonerate_coding2genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG actatcttaggcaagagttggcatacactctctaatctgttgtattacagGTAGTATACCTGGCCAGTGAAACCTTCAATTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAGGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaattagtggagctatggtccatgagaacagtcatatagccagcattgc Alignment from GeneWise GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG actatcttaggcaagagttggcatacactctctaatctgttgtattacagGTAGTATACCTGGCCAGTGAAACCTTCAATTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAGGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaattagtggagctatggtccatgagaacagtcatatagccagcattgc #### Pi4k2a_ID8403_6 --> 0 - 1 Original Alignment GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAt ttttcaacttgggggtggagcacctccatcccggaatcttgctttttcagGACACAGATTGGGTGATGGTAAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCAtgtaaagtcaagagactagggttcaagagactagggcttgcaacagtttat Alignment from CESAR GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAt ttttcaacttgggggtggagcacctccatcccggaatcttgctttttcagGACACAGATTGGGTGATGGTAAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCAtgtaaagtcaagagactagggttcaagagactagggcttgcaacagtttat Alignment from Spaln_aa2Genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttttcaacttgggggtggagcacctccatcccggaatcttgctttttcagGACACAGATTGGGTGATGGTAAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtaaagtcaagagactagggttcaagagactagggcttgcaacagtttat Alignment from Spaln_nt2Genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttttcaacttgggggtggagcacctccatcccggaatcttgctttttcagGACACAGATTGGGTGATGGTAAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtaaagtcaagagactagggttcaagagactagggcttgcaacagtttat Alignment from Pairagon GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttttcaacttgggggtggagcacctccatcccggaatcttgctttttcagGACACAGATTGGGTGATGGTAAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtaaagtcaagagactagggttcaagagactagggcttgcaacagtttat Alignment from Exonerate_protein2genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttttcaacttgggggtggagcacctccatcccggaatcttgctttttcagGACACAGATTGGGTGATGGTAAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtaaagtcaagagactagggttcaagagactagggcttgcaacagtttat Alignment from Exonerate_coding2genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttttcaacttgggggtggagcacctccatcccggaatcttgctttttcagGACACAGATTGGGTGATGGTAAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtaaagtcaagagactagggttcaagagactagggcttgcaacagtttat Alignment from GeneWise GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttttcaacttgggggtggagcacctccatcccggaatcttgctttttcagGACACAGATTGGGTGATGGTAAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtaaagtcaagagactagggttcaagagactagggcttgcaacagtttat #### Pi4k2a_ID8404_7 --> 2 - 0 Original Alignment atCCTTTTTACTGGGCCTGGCTGCCTCAGGCGAAAGTCCCGTTCTCTCAGGAGATCAAAGATTTGATTCTTCCAAAGATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGACCTATATGAACTCTTCAAG tttcacactaaaagtggctgacacacaactttctgtttcttccatcaaagacCCTTTTTACTGGGCCTGGTCACCTCAGGCAAAAGTCCCATTCTCTTTGGAGATCAAAGATTTGATTCTTCCAAAAATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGATCTTTATGAGCTCTTCAAAgtatggtcttcttgttctcacatctgggtggaactgacattacttataca Alignment from CESAR atCCTTTTTACTGGGCCTGGCTGCCTCAGGCGAAAGTCCCGTTCTCTCAGGAGATCAAAGATTTGATTCTTCCAAAGATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGACCTATATGAACTCTTCAAG tttcacactaaaagtggctgacacacaactttctgtttcttccatcaaagacCCTTTTTACTGGGCCTGGTCACCTCAGGCAAAAGTCCCATTCTCTTTGGAGATCAAAGATTTGATTCTTCCAAAAATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGATCTTTATGAGCTCTTCAAAgtatggtcttcttgttctcacatctgggtggaactgacattacttataca Alignment from Spaln_aa2Genome ATCCTTTTTACTGGGCCTGGCTGCCTCAGGCGAAAGTCCCGTTCTCTCAGGAGATCAAAGATTTGATTCTTCCAAAGATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGACCTATATGAACTCTTCAAG tttcacactaaaagtggctgacacacaactttctgtttcttccatcaaagACCCTTTTTACTGGGCCTGGTCACCTCAGGCAAAAGTCCCATTCTCTTTGGAGATCAAAGATTTGATTCTTCCAAAAATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGATCTTTATGAGCTCTTCAAAgtatggtcttcttgttctcacatctgggtggaactgacattacttataca Alignment from Spaln_nt2Genome ATCCTTTTTACTGGGCCTGGCTGCCTCAGGCGAAAGTCCCGTTCTCTCAGGAGATCAAAGATTTGATTCTTCCAAAGATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGACCTATATGAACTCTTCAAG tttcacactaaaagtggctgacacacaactttctgtttcttccatcaaagACCCTTTTTACTGGGCCTGGTCACCTCAGGCAAAAGTCCCATTCTCTTTGGAGATCAAAGATTTGATTCTTCCAAAAATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGATCTTTATGAGCTCTTCAAAgtatggtcttcttgttctcacatctgggtggaactgacattacttataca Alignment from Pairagon ATCCTTTTTACTGGGCCTGGCTGCCTCAGGCGAAAGTCCCGTTCTCTCAGGAGATCAAAGATTTGATTCTTCCAAAGATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGACCTATATGAACTCTTCAAG tttcacactaaaagtggctgacacacaactttctgtttcttccatcaaagACCCTTTTTACTGGGCCTGGTCACCTCAGGCAAAAGTCCCATTCTCTTTGGAGATCAAAGATTTGATTCTTCCAAAAATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGATCTTTATGAGCTCTTCAAAgtatggtcttcttgttctcacatctgggtggaactgacattacttataca Alignment from Exonerate_protein2genome ATCCTTTTTACTGGGCCTGGCTGCCTCAGGCGAAAGTCCCGTTCTCTCAGGAGATCAAAGATTTGATTCTTCCAAAGATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGACCTATATGAACTCTTCAAG tttcacactaaaagtggctgacacacaactttctgtttcttccatcaaagACCCTTTTTACTGGGCCTGGTCACCTCAGGCAAAAGTCCCATTCTCTTTGGAGATCAAAGATTTGATTCTTCCAAAAATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGATCTTTATGAGCTCTTCAAAgtatggtcttcttgttctcacatctgggtggaactgacattacttataca Alignment from Exonerate_coding2genome ATCCTTTTTACTGGGCCTGGCTGCCTCAGGCGAAAGTCCCGTTCTCTCAGGAGATCAAAGATTTGATTCTTCCAAAGATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGACCTATATGAACTCTTCAAG tttcacactaaaagtggctgacacacaactttctgtttcttccatcaaagACCCTTTTTACTGGGCCTGGTCACCTCAGGCAAAAGTCCCATTCTCTTTGGAGATCAAAGATTTGATTCTTCCAAAAATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGATCTTTATGAGCTCTTCAAAgtatggtcttcttgttctcacatctgggtggaactgacattacttataca Alignment from GeneWise ATCCTTTTTACTGGGCCTGGCTGCCTCAGGCGAAAGTCCCGTTCTCTCAGGAGATCAAAGATTTGATTCTTCCAAAGATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGACCTATATGAACTCTTCAAG tttcacactaaaagtggctgacacacaactttctgtttcttccatcaaagACCCTTTTTACTGGGCCTGGTCACCTCAGGCAAAAGTCCCATTCTCTTTGGAGATCAAAGATTTGATTCTTCCAAAAATTTCAGACCCTAACTTCATCAAGGACTTGGAGGAGGATCTTTATGAGCTCTTCAAAgtatggtcttcttgttctcacatctgggtggaactgacattacttataca #### Pik3ap1_ID8158_11 --> 2 - 1 Original Alignment ttTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAg tacctaaggatgctaatttgttttgactaagttggcgcttttattttcagttTTTGCAGAAAAAAGTCAGGAGCAGCTTGGGAATTTCTACGTCTCTTCTGAGAGTATCCGAAAAggtatgtcaggagtgtaccttggacttctagtatgtatctattgtaatata Alignment from CESAR ttTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAg tacctaaggatgctaatttgttttgactaagttggcgcttttattttcagttTTTGCAGAAAAAAGTCAGGAGCAGCTTGGGAATTTCTACGTCTCTTCTGAGAGTATCCGAAAAggtatgtcaggagtgtaccttggacttctagtatgtatctattgtaatata Alignment from Spaln_aa2Genome TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tacctaaggatgctaatttgttttgactaagttggcgcttttattttcagTTTTTGCAGAAAAAAGTCAGGAGCAGCTTGGGAATTTCTACGTCTCTTCTGAGAGTATCCGAAAAGgtatgtcaggagtgtaccttggacttctagtatgtatctattgtaatata Alignment from Spaln_nt2Genome TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tacctaaggatgctaatttgttttgactaagttggcgcttttattttcagTTTTTGCAGAAAAAAGTCAGGAGCAGCTTGGGAATTTCTACGTCTCTTCTGAGAGTATCCGAAAAGgtatgtcaggagtgtaccttggacttctagtatgtatctattgtaatata Alignment from Pairagon TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tacctaaggatgctaatttgttttgactaagttggcgcttttattttcagTTTTTGCAGAAAAAAGTCAGGAGCAGCTTGGGAATTTCTACGTCTCTTCTGAGAGTATCCGAAAAGgtatgtcaggagtgtaccttggacttctagtatgtatctattgtaatata Alignment from Exonerate_protein2genome TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tacctaaggatgctaatttgttttgactaagttggcgcttttattttcagTTTTTGCAGAAAAAAGTCAGGAGCAGCTTGGGAATTTCTACGTCTCTTCTGAGAGTATCCGAAAAGgtatgtcaggagtgtaccttggacttctagtatgtatctattgtaatata Alignment from Exonerate_coding2genome TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tacctaaggatgctaatttgttttgactaagttggcgcttttattttcagTTTTTGCAGAAAAAAGTCAGGAGCAGCTTGGGAATTTCTACGTCTCTTCTGAGAGTATCCGAAAAGgtatgtcaggagtgtaccttggacttctagtatgtatctattgtaatata Alignment from GeneWise TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tacctaaggatgctaatttgttttgactaagttggcgcttttattttcagTTTTTGCAGAAAAAAGTCAGGAGCAGCTTGGGAATTTCTACGTCTCTTCTGAGAGTATCCGAAAAGgtatgtcaggagtgtaccttggacttctagtatgtatctattgtaatata #### Pik3ap1_ID8159_10 --> 2 - 1 Original Alignment gtAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAg tgttaagatcttatactttaattctctgggcagcatcctctgtatttcaggtAACAGTGTGAAACCAGCCAGTTGGGAGAGAGAACACCACCACCCATATGGT---GAGTTATATCATGTTGTGGACCAGGATGAAACCCTCTCAGTAGACCTGGCCAACAGGCCACCTGTGCCTGTACCCAGACCAGAGGTCAGTGCACCTGGCCCTCCCCCCCCACCTGATAATGAACCATACATTCCAAGAggtcagtacagtttactacagttttatctttggggctcttaccaggctcaa Alignment from CESAR gtAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAg tgttaagatcttatactttaattctctgggcagcatcctctgtatttcaggtAACAGTGTGAAACCAGCCAGTTGGGAGAGAGAACACCACCACCCATATGGTGAG---TTATATCATGTTGTGGACCAGGATGAAACCCTCTCAGTAGACCTGGCCAACAGGCCACCTGTGCCTGTACCCAGACCAGAGGTCAGTGCACCTGGCCCTCCCCCCCCACCTGATAATGAACCATACATTCCAAGAggtcagtacagtttactacagttttatctttggggctcttaccaggctcaa Alignment from Spaln_aa2Genome GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG tgttaagatcttatactttaattctctgggcagcatcctctgtatttcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGAGAACACCACCACCCATATGGT---GAGTTATATCATGTTGTGGACCAGGATGAAACCCTCTCAGTAGACCTGGCCAACAGGCCACCTGTGCCTGTACCCAGACCAGAGGTCAGTGCACCTGGCCCTCCCCCCCCACCTGATAATGAACCATACATTCCAAGAGgtcagtacagtttactacagttttatctttggggctcttaccaggctcaa Alignment from Spaln_nt2Genome GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG tgttaagatcttatactttaattctctgggcagcatcctctgtatttcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGAGAACACCACCACCCATATGGTGAG---TTATATCATGTTGTGGACCAGGATGAAACCCTCTCAGTAGACCTGGCCAACAGGCCACCTGTGCCTGTACCCAGACCAGAGGTCAGTGCACCTGGCCCTCCCCCCCCACCTGATAATGAACCATACATTCCAAGAGgtcagtacagtttactacagttttatctttggggctcttaccaggctcaa Alignment from Pairagon GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG tgttaagatcttatactttaattctctgggcagcatcctctgtatttcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGAGAACACCACCACCCATATGGTGAG---TTATATCATGTTGTGGACCAGGATGAAACCCTCTCAGTAGACCTGGCCAACAGGCCACCTGTGCCTGTACCCAGACCAGAGGTCAGTGCACCTGGCCCTCCCCCCCCACCTGATAATGAACCATACATTCCAAGAGgtcagtacagtttactacagttttatctttggggctcttaccaggctcaa Alignment from Exonerate_protein2genome GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG tgttaagatcttatactttaattctctgggcagcatcctctgtatttcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGAGAACACCACCACCCATATGGT---GAGTTATATCATGTTGTGGACCAGGATGAAACCCTCTCAGTAGACCTGGCCAACAGGCCACCTGTGCCTGTACCCAGACCAGAGGTCAGTGCACCTGGCCCTCCCCCCCCACCTGATAATGAACCATACATTCCAAGAGgtcagtacagtttactacagttttatctttggggctcttaccaggctcaa Alignment from Exonerate_coding2genome GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG tgttaagatcttatactttaattctctgggcagcatcctctgtatttcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGAGAACACCACCACCCATATGGT---GAGTTATATCATGTTGTGGACCAGGATGAAACCCTCTCAGTAGACCTGGCCAACAGGCCACCTGTGCCTGTACCCAGACCAGAGGTCAGTGCACCTGGCCCTCCCCCCCCACCTGATAATGAACCATACATTCCAAGAGgtcagtacagtttactacagttttatctttggggctcttaccaggctcaa Alignment from GeneWise GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG tgttaagatcttatactttaattctctgggcagcatcctctgtatttcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGAGAACACCACCACCCATATGGTGAG---TTATATCATGTTGTGGACCAGGATGAAACCCTCTCAGTAGACCTGGCCAACAGGCCACCTGTGCCTGTACCCAGACCAGAGGTCAGTGCACCTGGCCCTCCCCCCCCACCTGATAATGAACCATACATTCCAAGAGgtcagtacagtttactacagttttatctttggggctcttaccaggctcaa #### Pik3ap1_ID8164_5 --> 2 - 0 Original Alignment acCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG agtcatacctcataccctttcatagggcaacttttgtttctgtctcttagacCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCAGGGGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAAATCGGGAACTTGCTTTCGAGCCCTGCCAATCCAGTGGAATTAATGTGTCAGgtaagagcagaccaaaatcaatccaacccaacaccaacatcagcaacttc Alignment from CESAR acCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG agtcatacctcataccctttcatagggcaacttttgtttctgtctcttagacCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCAGGGGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAAATCGGGAACTTGCTTTCGAGCCCTGCCAATCCAGTGGAATTAATGTGTCAGgtaagagcagaccaaaatcaatccaacccaacaccaacatcagcaatttt Alignment from Spaln_aa2Genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG agtcatacctcataccctttcatagggcaacttttgtttctgtctcttagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCAGGGGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAAATCGGGAACTTGCTTTCGAGCCCTGCCAATCCAGTGGAATTAATGTGTCAGgtaagagcagaccaaaatcaatccaacccaacaccaacatcagcaacttc Alignment from Spaln_nt2Genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG agtcatacctcataccctttcatagggcaacttttgtttctgtctcttagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCAGGGGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAAATCGGGAACTTGCTTTCGAGCCCTGCCAATCCAGTGGAATTAATGTGTCAGgtaagagcagaccaaaatcaatccaacccaacaccaacatcagcaacttc Alignment from Pairagon ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG agtcatacctcataccctttcatagggcaacttttgtttctgtctcttagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCAGGGGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAAATCGGGAACTTGCTTTCGAGCCCTGCCAATCCAGTGGAATTAATGTGTCAGgtaagagcagaccaaaatcaatccaacccaacaccaacatcagcaacttc Alignment from Exonerate_protein2genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG agtcatacctcataccctttcatagggcaacttttgtttctgtctcttagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCAGGGGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAAATCGGGAACTTGCTTTCGAGCCCTGCCAATCCAGTGGAATTAATGTGTCAGgtaagagcagaccaaaatcaatccaacccaacaccaacatcagcaacttc Alignment from Exonerate_coding2genome TCGAGTGCTGCAAATCCT agtcatacctcataccctttcatagggcaacttttgtttctgtctcttagacctttcctcagggaatgtctctctaaagctatattcaggggatctagtggtctgtgaaacaactgtcagttactatactgatatggaagaaatcgggaacttgctttcgagccctgccaatccagtggaattaatgtgtcaggtaagagcagaccaaaatcaatccaacccaacACCAACATCAGCAACTTC Alignment from GeneWise ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG agtcatacctcataccctttcatagggcaacttttgtttctgtctcttagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCAGGGGATCTAGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAAATCGGGAACTTGCTTTCGAGCCCTGCCAATCCAGTGGAATTAATGTGTCAGgtaagagcagaccaaaatcaatccaacccaacaccaacatcagcaacttc #### Pitpnm1_ID308_5 --> 2 - 1 Original Alignment gtCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAg attgtagtgggaaatggatgttgtaaaactctcgtgctctctcctcataggcCTTCACAGGGTAATGCTCCGTACTCATCGTCAGACCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAATGTATGGCTAAA---AATACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCACCCTGGCCCTGATGCATCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCACATTCGTCGCAACATGGGggtaataattaactgggtcacaatatgggggtgagcatctttttaacattg Alignment from CESAR gtCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAg attgtagtgggaaatggatgttgtaaaactctcgtgctctctcctcataggcCTTCACAGGGTAATGCTCCGTACTCATCGTCAGACCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAATGTATGGCTAAA---AATACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCACCCTGGCCCTGATGCATCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCACATTCGTCGCAACATGGGggtaataattaactgggtcacaatatgggggtgagcatctttttaacatct Alignment from Spaln_aa2Genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG attgtagtgggaaatggatgttgtaaaactctcgtgctctctcctcatagGCCTTCACAGGGTAATGCTCCGTACTCATCGTCAGACCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAATGTATGGCTAAA---AATACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCACCCTGGCCCTGATGCATCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCACATTCGTCGCAACATGGGGgtaataattaactgggtcacaatatgggggtgagcatctttttaacattg Alignment from Spaln_nt2Genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG attgtagtgggaaatggatgttgtaaaactctcgtgctctctcctcatagGCCTTCACAGGGTAATGCTCCGTACTCATCGTCAGACCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAATGTATGGCTAA---AAATACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCACCCTGGCCCTGATGCATCCCCAGA---CAGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCACATTCGTCGCAACATGGGGgtaataattaactgggtcacaatatgggggtgagcatctttttaacattg Alignment from Pairagon GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG attgtagtgggaaatggatgttgtaaaactctcgtgctctctcctcatagGCCTTCACAGGGTAATGCTCCGTACTCATCGTCAGACCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAATGTATGGCTAAA---AATACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCACCCTGGCCCTGATGCATCCCCAGA---CAGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCACATTCGTCGCAACATGGGGgtaataattaactgggtcacaatatgggggtgagcatctttttaacattg Alignment from Exonerate_protein2genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG attgtagtgggaaatggatgttgtaaaactctcgtgctctctcctcatagGCCTTCACAGGGTAATGCTCCGTACTCATCGTCAGACCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAATGTATGGCTAAA---AATACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCACCCTGGCCCTGATGCATCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCACATTCGTCGCAACATGGGGgtaataattaactgggtcacaatatgggggtgagcatctttttaacattg Alignment from Exonerate_coding2genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG attgtagtgggaaatggatgttgtaaaactctcgtgctctctcctcatagGCCTTCACAGGGTAATGCTCCGTACTCATCGTCAGACCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAATGTATGGCTAAA---AATACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCACCCTGGCCCTGATGCATCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCACATTCGTCGCAACATGGGGgtaataattaactgggtcacaatatgggggtgagcatctttttaacattg Alignment from GeneWise GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG attgtagtgggaaatggatgttgtaaaactctcgtgctctctcctcatagGCCTTCACAGGGTAATGCTCCGTACTCATCGTCAGACCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAATGTATGGCTAAA---AATACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCACCCTGGCCCTGATGCATCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCACATTCGTCGCAACATGGGGgtaataattaactgggtcacaatatgggggtgagcatctttttaacattg #### Pitpnm1_ID311_8 --> 2 - 0 Original Alignment atCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG cccattgcaatggaccacaatctgtactgcatcatctgatctgattttagatCCTACAGTTATGACAACAAAGGGCATTGAAGATGGCACACGT---GCTAGAGATTCTGAAgtaagttgggattatgaaatgaccctgagcaacattcccctggttgcaat Alignment from CESAR atCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG cccattgcaatggaccacaatctgtactgcatcatctgatctgattttagatCCTACAGTTATGACAACAAAGGGCATTGAAGATGGCACACGTGCT---AGAGATTCTGAAgtaagttgggattatgaaatgaccctgagcaacattcccctggttgcaat Alignment from Spaln_aa2Genome ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG cccattgcaatggaccacaatctgtactgcatcatctgatctgattttagATCCTACAGTTATGACAACAAAGGGCATTGAAGATGGCACACGTGCT---AGAGATTCTGAAgtaagttgggattatgaaatgaccctgagcaacattcccctggttgcaat Alignment from Spaln_nt2Genome ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG cccattgcaatggaccacaatctgtactgcatcatctgatctgattttagATCCTACAGTTATGACAACAAAGGGCATTGAAGATGGCACACGTGCT---AGAGATTCTGAAgtaagttgggattatgaaatgaccctgagcaacattcccctggttgcaat Alignment from Pairagon ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG cccattgcaatggaccacaatctgtactgcatcatctgatctgattttagATCCTACAGTTATGACAACAAAGGGCATTGAAGATGGCACACGTGCT---AGAGATTCTGAAgtaagttgggattatgaaatgaccctgagcaacattcccctggttgcaat Alignment from Exonerate_protein2genome ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG cccattgcaatggaccacaatctgtactgcatcatctgatctgattttagATCCTACAGTTATGACAACAAAGGGCATTGAAGATGGCACACGTGCT---AGAGATTCTGAAgtaagttgggattatgaaatgaccctgagcaacattcccctggttgcaat Alignment from Exonerate_coding2genome ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG cccattgcaatggaccacaatctgtactgcatcatctgatctgattttagATCCTACAGTTATGACAACAAAGGGCATTGAAGATGGCACACGTGCT---AGAGATTCTGAAgtaagttgggattatgaaatgaccctgagcaacattcccctggttgcaat Alignment from GeneWise ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG cccattgcaatggaccacaatctgtactgcatcatctgatctgattttagATCCTACAGTTATGACAACAAAGGGCATTGAAGATGGCACACGTGCT---AGAGATTCTGAAgtaagttgggattatgaaatgaccctgagcaacattcccctggttgcaat #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctggttatgtcttaattgtccattactgcccgccctgcccatgtgcccagcCTAAGTCCTTATAGCCATGATGGAGATTGTCTATCCCGAACCCCAGACCACATTCCATTGGCTTGCCTCCCTCTTCTGACCATCTTATCCTCTCAATACCAGGGGGCAGTGACCACAGTTATTGCTCACACCAACCAAGCCTTTGCAGCTTTTCTGCGTTCGTCAGAGGGATCTGGTTTCTGTGGACAAgtgagggtaactgtatttgcatgggttaatcaaaaacctatgatgctgcc Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctggttatgtcttaattgtccattactgcccgccctgcccatgtgcccagcCTAAGTCCTTATAGCCATGATGGAGATTGTCTATCCCGAACCCCAGACCACATTCCATTGGCTTGCCTCCCTCTTCTGACCATCTTATCCTCTCAATACCAGGGGGCAGTGACCACAGTTATTGCTCACACCAACCAAGCCTTTGCAGCTTTTCTGCGTTCGTCAGAGGGATCTGGTTTCTGTGGACAAgtgagggtaactgtatttgcatgggttaatcaaaaacctatgatgctgcc Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctggttatgtcttaattgtccattactgcccgccctgcccatgtgcccagCCTAAGTCCTTATAGCCATGATGGAGATTGTCTATCCCGAACCCCAGACCACATTCCATTGGCTTGCCTCCCTCTTCTGACCATCTTATCCTCTCAATACCAGGGGGCAGTGACCACAGTTATTGCTCACACCAACCAAGCCTTTGCAGCTTTTCTGCGTTCGTCAGAGGGATCTGGTTTCTGTGGACAAgtgagggtaactgtatttgcatgggttaatcaaaaacctatgatgctgcc Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctggttatgtcttaattgtccattactgcccgccctgcccatgtgcccagCCTAAGTCCTTATAGCCATGATGGAGATTGTCTATCCCGAACCCCAGACCACATTCCATTGGCTTGCCTCCCTCTTCTGACCATCTTATCCTCTCAATACCAGGGGGCAGTGACCACAGTTATTGCTCACACCAACCAAGCCTTTGCAGCTTTTCTGCGTTCGTCAGAGGGATCTGGTTTCTGTGGACAAgtgagggtaactgtatttgcatgggttaatcaaaaacctatgatgctgcc Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctggttatgtcttaattgtccattactgcccgccctgcccatgtgcccagCCTAAGTCCTTATAGCCATGATGGAGATTGTCTATCCCGAACCCCAGACCACATTCCATTGGCTTGCCTCCCTCTTCTGACCATCTTATCCTCTCAATACCAGGGGGCAGTGACCACAGTTATTGCTCACACCAACCAAGCCTTTGCAGCTTTTCTGCGTTCGTCAGAGGGATCTGGTTTCTGTGGACAAgtgagggtaactgtatttgcatgggttaatcaaaaacctatgatgctgcc Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctggttatgtcttaattgtccattactgcccgccctgcccatgtgcccagCCTAAGTCCTTATAGCCATGATGGAGATTGTCTATCCCGAACCCCAGACCACATTCCATTGGCTTGCCTCCCTCTTCTGACCATCTTATCCTCTCAATACCAGGGGGCAGTGACCACAGTTATTGCTCACACCAACCAAGCCTTTGCAGCTTTTCTGCGTTCGTCAGAGGGATCTGGTTTCTGTGGACAAgtgagggtaactgtatttgcatgggttaatcaaaaacctatgatgctgcc Alignment from Exonerate_coding2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctggttatgtcttaattgtccattactgcccgccctgcccatgtgcccagCCTAAGTCCTTATAGCCATGATGGAGATTGTCTATCCCGAACCCCAGACCACATTCCATTGGCTTGCCTCCCTCTTCTGACCATCTTATCCTCTCAATACCAGGGGGCAGTGACCACAGTTATTGCTCACACCAACCAAGCCTTTGCAGCTTTTCTGCGTTCGTCAGAGGGATCTGGTTTCTGTGGACAAgtgagggtaactgtatttgcatgggttaatcaaaaacctatgatgctgcc Alignment from GeneWise CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctggttatgtcttaattgtccattactgcccgccctgcccatgtgcccagCCTAAGTCCTTATAGCCATGATGGAGATTGTCTATCCCGAACCCCAGACCACATTCCATTGGCTTGCCTCCCTCTTCTGACCATCTTATCCTCTCAATACCAGGGGGCAGTGACCACAGTTATTGCTCACACCAACCAAGCCTTTGCAGCTTTTCTGCGTTCGTCAGAGGGATCTGGTTTCTGTGGACAAgtgagggtaactgtatttgcatgggttaatcaaaaacctatgatgctgcc #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACCAGAGAAGAGgtaagtttttgccttatatttgcagGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTTACACTCACCAGAGAAGAGgtccccttttgccttatatttgcagGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCaggtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCAGAGAAGAGGTAAGTTTTTGCCTTATATTTGCAgGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from Spaln_nt2Genome CACGCTCACTGGAGAGAAGGTGGAT-------------------------------GTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TACACTCAC--CAGAGAA----GAGGTAAGTTTTTGCCTTATATTTGCAGGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCAGAGAAGAGGTAAGTTTTTGCCTTATATTTGCAGGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCAGAGAAGAGgtaagtttttgccttatatttgcaggttgag------GTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from Exonerate_coding2genome tgtagttacactcaccagagaagaggtaagtttttgccttatatttgcaggttgaggtctatgtcatgacacagcccctgtcaggcaagtggattcattttggcacagaggtcacaaacagttctggccatcttaccttcccagtttcatcagagcatgcactgggcattggtgtctaccctttgcacatggtggtcaggtgagcacagaaagttagctactaatttcattcctgttaaatactaactt Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTTACACTCACCAGAGAAGAGgtaagtttttgccttatatttgcagGTTGAGGTCTATGTCATGACACAGCCCCTGTCAGGCAAGTGGATTCATTTTGGCACAGAGGTCACAAACAGTTCTGGCCATCTTACCTTCCCAGTTTCATCAGAGCATGCACTGGGCATTGGTGTCTACCCTTTGCACATGGTGGTCAGgtgagcacagaaagttagctactaatttcattcctgttaaatactaactt #### Pkd2l1_ID8962_6 --> 1 - 0 Original Alignment aCTGGTGGTAGAGTTTCCAGCCACAGGAGGGACCATCCCATCCTGGCAGATCCGCACAGTTAAGCTGATCCGCTATGTGAATAACTGGGACTTCTTCATTGTGGGCTGTGAAGTTGTCTTCTGTGTCTTCATCTTCTATTATGTGGTGGAGGAAATCCTGGAAATCCACCTGCATCGGCTTCGCTACCTCAGCAGCGTCTGGAACATTCTGGACCTGGTGGTCATCTTG caataccatctgccaaagcctccaatctttttttgtttgtttgtttgcagaCTTGTCATAGAGTTCCGATCCACAGGTGGGACCATGCCATCTTGGCAAATCCACACAGTTAAGCTAATTCATCATGTTAACAACTGGGCTTTTTTCATTGTTGGTTGTGAAGCTGTCTTCTGTGTATTCATATTCTATTATGTTGCAGAGGAGATCCTAGAAGTCCACCTACACCACCTTCACTATCTTAGCAGTATCTGGAATATTCTAGACTTGGTGATAATTCTAgtaagaaaaagtgggtaccagaaggactatccattctaggtggatcaaca Alignment from CESAR aCTGGTGGTAGAGTTTCCAGCCACAGGAGGGACCATCCCATCCTGGCAGATCCGCACAGTTAAGCTGATCCGCTATGTGAATAACTGGGACTTCTTCATTGTGGGCTGTGAAGTTGTCTTCTGTGTCTTCATCTTCTATTATGTGGTGGAGGAAATCCTGGAAATCCACCTGCATCGGCTTCGCTACCTCAGCAGCGTCTGGAACATTCTGGACCTGGTGGTCATCTTG caataccatctgccaaagcctccaatctttttttgtttgtttgtttgcagaCTTGTCATAGAGTTCCGATCCACAGGTGGGACCATGCCATCTTGGCAAATCCACACAGTTAAGCTAATTCATCATGTTAACAACTGGGCTTTTTTCATTGTTGGTTGTGAAGCTGTCTTCTGTGTATTCATATTCTATTATGTTGCAGAGGAGATCCTAGAAGTCCACCTACACCACCTTCACTATCTTAGCAGTATCTGGAATATTCTAGACTTGGTGATAATTCTAgtaagaaaaagtgggtaccagaaggactatccattctaggtggatcaaca Alignment from Spaln_aa2Genome ACTGGTGGTAGAGTTTCCAGCCACAGGAGGGACCATCCCATCCTGGCAGATCCGCACAGTTAAGCTGATCCGCTATGTGAATAACTGGGACTTCTTCATTGTGGGCTGTGAAGTTGTCTTCTGTGTCTTCATCTTCTATTATGTGGTGGAGGAAATCCTGGAAATCCACCTGCATCGGCTTCGCTACCTCAGCAGCGTCTGGAACATTCTGGACCTGGTGGTCATCTTG caataccatctgccaaagcctccaatctttttttgtttgtttgtttgcagACTTGTCATAGAGTTCCGATCCACAGGTGGGACCATGCCATCTTGGCAAATCCACACAGTTAAGCTAATTCATCATGTTAACAACTGGGCTTTTTTCATTGTTGGTTGTGAAGCTGTCTTCTGTGTATTCATATTCTATTATGTTGCAGAGGAGATCCTAGAAGTCCACCTACACCACCTTCACTATCTTAGCAGTATCTGGAATATTCTAGACTTGGTGATAATTCTAgtaagaaaaagtgggtaccagaaggactatccattctaggtggatcaaca Alignment from Spaln_nt2Genome ACTGGTGGTAGAGTTTCCAGCCACAGGAGGGACCATCCCATCCTGGCAGATCCGCACAGTTAAGCTGATCCGCTATGTGAATAACTGGGACTTCTTCATTGTGGGCTGTGAAGTTGTCTTCTGTGTCTTCATCTTCTATTATGTGGTGGAGGAAATCCTGGAAATCCACCTGCATCGGCTTCGCTACCTCAGCAGCGTCTGGAACATTCTGGACCTGGTGGTCATCTTG caataccatctgccaaagcctccaatctttttttgtttgtttgtttgcagACTTGTCATAGAGTTCCGATCCACAGGTGGGACCATGCCATCTTGGCAAATCCACACAGTTAAGCTAATTCATCATGTTAACAACTGGGCTTTTTTCATTGTTGGTTGTGAAGCTGTCTTCTGTGTATTCATATTCTATTATGTTGCAGAGGAGATCCTAGAAGTCCACCTACACCACCTTCACTATCTTAGCAGTATCTGGAATATTCTAGACTTGGTGATAATTCTAgtaagaaaaagtgggtaccagaaggactatccattctaggtggatcaaca Alignment from Pairagon ACTGGTGGTAGAGTTTCCAGCCACAGGAGGGACCATCCCATCCTGGCAGATCCGCACAGTTAAGCTGATCCGCTATGTGAATAACTGGGACTTCTTCATTGTGGGCTGTGAAGTTGTCTTCTGTGTCTTCATCTTCTATTATGTGGTGGAGGAAATCCTGGAAATCCACCTGCATCGGCTTCGCTACCTCAGCAGCGTCTGGAACATTCTGGACCTGGTGGTCATCTTG caataccatctgccaaagcctccaatctttttttgtttgtttgtttgcagACTTGTCATAGAGTTCCGATCCACAGGTGGGACCATGCCATCTTGGCAAATCCACACAGTTAAGCTAATTCATCATGTTAACAACTGGGCTTTTTTCATTGTTGGTTGTGAAGCTGTCTTCTGTGTATTCATATTCTATTATGTTGCAGAGGAGATCCTAGAAGTCCACCTACACCACCTTCACTATCTTAGCAGTATCTGGAATATTCTAGACTTGGTGATAATTCTAgtaagaaaaagtgggtaccagaaggactatccattctaggtggatcaaca Alignment from Exonerate_protein2genome ACTGGTGGTAGAGTTTCCAGCCACAGGAGGGACCATCCCATCCTGGCAGATCCGCACAGTTAAGCTGATCCGCTATGTGAATAACTGGGACTTCTTCATTGTGGGCTGTGAAGTTGTCTTCTGTGTCTTCATCTTCTATTATGTGGTGGAGGAAATCCTGGAAATCCACCTGCATCGGCTTCGCTACCTCAGCAGCGTCTGGAACATTCTGGACCTGGTGGTCATCTTG caataccatctgccaaagcctccaatctttttttgtttgtttgtttgcagACTTGTCATAGAGTTCCGATCCACAGGTGGGACCATGCCATCTTGGCAAATCCACACAGTTAAGCTAATTCATCATGTTAACAACTGGGCTTTTTTCATTGTTGGTTGTGAAGCTGTCTTCTGTGTATTCATATTCTATTATGTTGCAGAGGAGATCCTAGAAGTCCACCTACACCACCTTCACTATCTTAGCAGTATCTGGAATATTCTAGACTTGGTGATAATTCTAgtaagaaaaagtgggtaccagaaggactatccattctaggtggatcaaca Alignment from Exonerate_coding2genome ACTGGTGGTAGAGTTTCCAGCCACAGGAGGGACCATCCCATCCTGGCAGATCCGCACAGTTAAGCTGATCCGCTATGTGAATAACTGGGACTTCTTCATTGTGGGCTGTGAAGTTGTCTTCTGTGTCTTCATCTTCTATTATGTGGTGGAGGAAATCCTGGAAATCCACCTGCATCGGCTTCGCTACCTCAGCAGCGTCTGGAACATTCTGGACCTGGTGGTCATCTTG caataccatctgccaaagcctccaatctttttttgtttgtttgtttgcagACTTGTCATAGAGTTCCGATCCACAGGTGGGACCATGCCATCTTGGCAAATCCACACAGTTAAGCTAATTCATCATGTTAACAACTGGGCTTTTTTCATTGTTGGTTGTGAAGCTGTCTTCTGTGTATTCATATTCTATTATGTTGCAGAGGAGATCCTAGAAGTCCACCTACACCACCTTCACTATCTTAGCAGTATCTGGAATATTCTAGACTTGGTGATAATTCTAgtaagaaaaagtgggtaccagaaggactatccattctaggtggatcaaca Alignment from GeneWise ACTGGTGGTAGAGTTTCCAGCCACAGGAGGGACCATCCCATCCTGGCAGATCCGCACAGTTAAGCTGATCCGCTATGTGAATAACTGGGACTTCTTCATTGTGGGCTGTGAAGTTGTCTTCTGTGTCTTCATCTTCTATTATGTGGTGGAGGAAATCCTGGAAATCCACCTGCATCGGCTTCGCTACCTCAGCAGCGTCTGGAACATTCTGGACCTGGTGGTCATCTTG caataccatctgccaaagcctccaatctttttttgtttgtttgtttgcagACTTGTCATAGAGTTCCGATCCACAGGTGGGACCATGCCATCTTGGCAAATCCACACAGTTAAGCTAATTCATCATGTTAACAACTGGGCTTTTTTCATTGTTGGTTGTGAAGCTGTCTTCTGTGTATTCATATTCTATTATGTTGCAGAGGAGATCCTAGAAGTCCACCTACACCACCTTCACTATCTTAGCAGTATCTGGAATATTCTAGACTTGGTGATAATTCTAgtaagaaaaagtgggtaccagaaggactatccattctaggtggatcaaca #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment --gt gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG GGatgtaaccacccagaagcaggtcaatgtctgtcctgttctctctctagaGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtgagtacccagaagcaggtcaatgtctgtcctgttctctctctagaGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtaaccacccagaagcaggtcaatgtctgtcctgttctctctctagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtaaccacccagaagcaggtcaatgtctgtcctgttctctctctagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from Pairagon GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtaaccacccagaagcaggtcaatgtctgtcctgttctctctctagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtaaccacccagaagcaggtcaatgtctgtcctgttctctctctagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG ggatgtaaccacccagaagcaggtcaatgtctgtcctgttctctctctagAGAATTGACAGAGATTATCCGGCAACACATCACTGAGTCAATAAATTCCAACAGACAGgtgagaggtaatctcctttgtcaagaacttcctttgtcactaacagagac #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAG---------------gt gGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacaggGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTATTTCAGAAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTGTATGGTCACTGGatgtgagtacccagaagcaggtcaatcgcatgcgccctgttcccacagaGAA Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt gGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacaggGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTATTTCAGAAGCCAAGACAAGGGAGAAACATAAGAAGGAAgtgtatggtcactggatgtgagtacccagaagcaggtcaatgtctgtcctgttctctctctagaGAA Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacagGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTATTTCAGAAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaatcgcatgcgccctgttcccacagAGAA Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacagGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTATTTCAGAAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaatcgcatgcgccctgttcccacagAGAA Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacagGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTATTTCAGAAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaatcgcatgcgccctgttcccacagAGAA Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacagGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTATTTCAGAAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaatcgcatgcgccctgttcccacagAGAA Alignment from Exonerate_coding2genome AGGGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacAGGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTATTTCAGAAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaatcgcatgcgccctgttcccacagAGAA Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT GGAA tcggtataattcctcacatacaattcaactcatgtatctgtctcttacagGGAGAAAAGAGAGCCTCAAAAGATCCTGGATAGGGAGCGCAACAATAGTATTTCAGAAGCCAAGACAAGGGAGAAACATAAGAAGGAAGTgtatggtcactggatgtgagtacccagaagcaggtcaatcgcatgcgccctgttcccacagAGAA #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTGTATCTACAATCCACTCTggtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagta Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTGTATCTACAATCCACTCTggtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagtg Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTGTATCTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagta Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTGTATCTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagta Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTGTATCTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagta Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTGTATCTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgctttgccatatgtgagttgtgacaggtaatatgatttatttcctcagGTTGTACTACCCACAGTGACATCGCTCCGCATTGCAGTTTTTGAGAAGGGTGGCAAGTTTGTAGGGCATCGAACTCTGCCTGTATCTACAATCCACTCTGgtaggtttaggtgggggctgatttgaaacaattataaaattctgcaagta #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagaTACAACAGACAACAGCTTAGTCAGATATACTCCAGGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGggtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagaTACAACAGACAACAGCTTAGTCAGATATACTCCAGGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGggtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagATACAACAGACAACAGCTTAGTCAGATATACTCCAGGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGGgtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagATACAACAGACAACAGCTTAGTCAGATATACTCCAGGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGGgtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagATACAACAGACAACAGCTTAGTCAGATATACTCCAGGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGGgtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagATACAACAGACAACAGCTTAGTCAGATATACTCCAGGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGGgtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ggcctcctgactgctgtatccccatgacactaacatgtcattctctccagATACAACAGACAACAGCTTAGTCAGATATACTCCAGGAGCAAACAAGTG---TCCTCAAACTACATGCCTTATCTCTTTTGGAATGTAGGCTGCCAACTTGTTGCCTTCAACTTCCAGAGCCTGGgtgagtatatgttcgcttttggcctccctaatcacctacctttaatttgg #### Plcb3_ID1917_14 --> 2 - 0 Original Alignment ggTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG cacttctgcaatgatatggtatgcaatttgacgctctttctctcattcaggtGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGTGAAGCAGTTGGTCTTGAGAAGACCAGCTTGGAGCCACAGAAGTCCCGAGGTGAAGAAAGCCTCAGCCGGGAACCCAATGTCCCCATGCCAGATCGTGACCGTGATGATGAGGAGGAGGAGGAAGAAGAAGATGAAACAATGGACCCTAAGAAACCCACT---AATGAAgtaggtccgataaatttcagctgcatggtaccctcaacaaatccgcatgc Alignment from CESAR ggTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG cacttctgcaatgatatggtatgcaatttgacgctctttctctcattcaggtGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGTGAAGCAGTTGGTCTTGAGAAGACCAGCTTGGAGCCACAGAAGTCCCGAGGTGAAGAAAGCCTCAGCCGGGAACCCAATGTCCCCATGCCAGATCGTGACCGTGATGATGAGGAGGAGGAGGAAGAAGAAGATGAAACAATGGACCCTAAGAAACCC---ACTAATGAAgtaggtccgataaatttcagctgcatggtaccctcaacaaatccgcatgc Alignment from Spaln_aa2Genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG cacttctgcaatgatatggtatgcaatttgacgctctttctctcattcagGTGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGTGAAGCAGTTGGTCTTGAGAAGACCAGCTTGGAGCCACAGAAGTCCCGAGGTGAAGAAAGCCTCAGCCGGGAACCCAATGTCCCCATGCCAGATCGTGACCGTGATGATGAGGAGGAGGAGGAAGAAGAAGATGAAACAATGGACCCTAAGAAACCC---ACTAATGAAgtaggtccgataaatttcagctgcatggtaccctcaacaaatccgcatgc Alignment from Spaln_nt2Genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGAT cacttctgcaatgatatggtatgcaatttgacgctctttctctcattcagGTGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGTGAAGCAGTTGGTCTTGAGAAGACCAGCTTGGAGCCACAGAAGTCCCGAGGTGAAGAAAGCCTCAGCCGGGAACCCAATGTCCCCATGCCAGATCGTGACCGTGATGATGAGGAGGAGGAGGAAGAAGAAGATGAAACAATGGACCCTAAGAAACCCACTAATGAAgtaggtccgataaatttcagctgcatggtaccctcaacaaatccgcatgc Alignment from Pairagon GCCCTCCTCACCTCAGCTTGGGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG cacttctgcaatgatatggtatgcaatttgacgctctttctctcattcaggtgtaccaagttcag-----------------------------------ACAGCTGCCCTGGGTTAAGCAATGGTGAAGCAGTTGGTCTTGAGAAGACCAGCTTGGAGCCACAGAAGTCCCGAGGTGAAGAAAGCCTCAGCCGGGAACCCAATGTCCCCATGCCAGATCGTGACCGTGATGATGAGGAGGAGGAGGAAGAAGAAGATGAAACAATGGACCCTAAGAAACCCACTA---ATGAAgtaggtccgataaatttcagctgcatggtaccctcaacaaatccgcatgc Alignment from Exonerate_protein2genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG cacttctgcaatgatatggtatgcaatttgacgctctttctctcattcagGTGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGTGAAGCAGTTGGTCTTGAGAAGACCAGCTTGGAGCCACAGAAGTCCCGAGGTGAAGAAAGCCTCAGCCGGGAACCCAATGTCCCCATGCCAGATCGTGACCGTGATGATGAGGAGGAGGAGGAAGAAGAAGATGAAACAATGGACCCTAAGAAACCC---ACTAATGAAgtaggtccgataaatttcagctgcatggtaccctcaacaaatccgcatgc Alignment from Exonerate_coding2genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGAT cacttctgcaatgatatggtatgcaatttgacgctctttctctcattcagGTGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGTGAAGCAGTTGGTCTTGAGAAGACCAGCTTGGAGCCACAGAAGTCCCGAGGTGAAGAAAGCCTCAGCCGGGAACCCAATGTCCCCATGCCAGATCGTGACCGTGATGATGAGGAGGAGGAGGAAGAAGAAGATGAAACAATGGACCCTAAGAAACCCACTAATGAAgtaggtccgataaatttcagctgcatggtaccctcaacaaatccgcatgc Alignment from GeneWise GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG cacttctgcaatgatatggtatgcaatttgacgctctttctctcattcagGTGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGTGAAGCAGTTGGTCTTGAGAAGACCAGCTTGGAGCCACAGAAGTCCCGAGGTGAAGAAAGCCTCAGCCGGGAACCCAATGTCCCCATGCCAGATCGTGACCGTGATGATGAGGAGGAGGAGGAAGAAGAAGATGAAACAATGGACCCTAAGAAACCCACT---AATGAAgtaggtccgataaatttcagctgcatggtaccctcaacaaatccgcatgc #### Plce1_ID7619_6 --> 0 - 2 Original Alignment TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca gtcacatgagtaactacaaaattgaaaacttttcctcatttctccttcagTTGGTAGCTGATTACAGTGGGCAAGATACCACTTTACAGCGAGTGGGACAAATAGGGTTAAAAAATGCA---AAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAGGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCAAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGcagtgagttacagcaggagtgggctagttgctaagcaatcactacacctcct Alignment from CESAR TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca gtcacatgagtaactacaaaattgaaaacttttcctcatttctccttcagTTGGTAGCTGATTACAGTGGGCAAGATACCACTTTACAGCGAGTGGGACAAATAGGGTTAAAAAATGCA---AAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAGGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCAAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGcagtgagttacagcaggagtgggctagttgctaagcaatcactacacctcct Alignment from Spaln_aa2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagtaactacaaaattgaaaacttttcctcatttctccttcagTTGGTAGCTGATTACAGTGGGCAAGATACCACTTTACAGCGAGTGGGACAAATAGGGTTAAAAAATGCA---AAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAGGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCAAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtgagttacagcaggagtgggctagttgctaagcaatcactacacctcct Alignment from Spaln_nt2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagtaactacaaaattgaaaacttttcctcatttctccttcagTTGGTAGCTGATTACAGTGGGCAAGATACCACTTTACAGCGAGTGGGACAAATAGGGTTAAAAAATGCA---AAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAGGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCAAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtgagttacagcaggagtgggctagttgctaagcaatcactacacctcct Alignment from Pairagon TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagtaactacaaaattgaaaacttttcctcatttctccttcagTTGGTAGCTGATTACAGTGGGCAAGATACCACTTTACAGCGAGTGGGACAAATAGGGTTAAAAAATGCA---AAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAGGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCAAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtgagttacagcaggagtgggctagttgctaagcaatcactacacctcct Alignment from Exonerate_protein2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagtaactacaaaattgaaaacttttcctcatttctccttcagTTGGTAGCTGATTACAGTGGGCAAGATACCACTTTACAGCGAGTGGGACAAATAGGGTTAAAAAATGCA---AAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAGGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCAAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtgagttacagcaggagtgggctagttgctaagcaatcactacacctcct Alignment from Exonerate_coding2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagtaactacaaaattgaaaacttttcctcatttctccttcagTTGGTAGCTGATTACAGTGGGCAAGATACCACTTTACAGCGAGTGGGACAAATAGGGTTAAAAAATGCA---AAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAGGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCAAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtgagttacagcaggagtgggctagttgctaagcaatcactacacctcct Alignment from GeneWise TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagtaactacaaaattgaaaacttttcctcatttctccttcagTTGGTAGCTGATTACAGTGGGCAAGATACCACTTTACAGCGAGTGGGACAAATAGGGTTAAAAAATGCA---AAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAGGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCAAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtgagttacagcaggagtgggctagttgctaagcaatcactacacctcct #### Plce1_ID7621_7 --> 1 - 0 Original Alignment gTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG ctttgtaagattaagtttattttgtagcagcctttgttttcttcctgcagaTTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGATAAGTCCAAAGAGTGTGACCCCCATGGCTCTGCAGAGTCACAAAAGGCATTTGACCATGGGACAGAGCTTATTCCATGGCATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCTACAGTCATTCACTAT---CAGGACACACACCTTTCT---GGGTGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCAAAACTTGGAGTGCTTAGT---ATGACAGAAGGT---GAGTTTCCATCACCAGGCAATGCCACTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTTGGTAAAAGCCATTCATATGGGACACCATGGTTTTGACACACATACTGTATGTGTGCAAAATAAGCTTGTCAGCATGCTTCTGTCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAAAAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACATTGTTCAGT---GTGCTGGATCTAACCACCACAGTCAGGAAGATCAGAAGGTTCCCTGAGCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaacaaagcaatcagcccttagatgcacaaccacttatccctaggcttt Alignment from CESAR gTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG ctttgtaagattaagtttattttgtagcagcctttgttttcttcctgcagaTTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGATAAGTCCAAAGAGTGTGACCCCCATGGCTCTGCAGAGTCACAAAAGGCATTTGACCATGGGACAGAGCTTATTCCATGGCATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCTACAGTCATTCACTAT---CAGGACACACACCTTTCTGGG---TGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCAAAACTTGGAGTGCTTAGT---ATGACAGAA---GGTGAGTTTCCATCACCAGGCAATGCCACTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTTGGTAAAAGCCATTCATATGGGACACCATGGTTTTGACACACATACTGTATGTGTGCAAAATAAGCTTGTCAGCATGCTTCTGTCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAAAAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACATTGTTCAGT---GTGCTGGATCTAACCACCACAGTCAGGAAGATCAGAAGGTTCCCTGAGCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaacaaagcaatcagcccttagatgcacaaccacttatccctaggcttt Alignment from Spaln_aa2Genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG ctttgtaagattaagtttattttgtagcagcctttgttttcttcctgcagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGATAAGTCCAAAGAGTGTGACCCCCATGGCTCTGCAGAGTCACAAAAGGCATTTGACCATGGGACAGAGCTTATTCCATGGCATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCTACAGTCATTCACTAT---CAGGACACACACCTTTCTGGG---TGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCAAAACTTGGAGTGCTTAGT---ATGACAGAA---GGTGAGTTTCCATCACCAGGCAATGCCACTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTTGGTAAAAGCCATTCATATGGGACACCATGGTTTTGACACACATACTGTATGTGTGCAAAATAAGCTTGTCAGCATGCTTCTGTCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAAAAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACATTGTTCAGT---GTGCTGGATCTAACCACCACAGTCAGGAAGATCAGAAGGTTCCCTGAGCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaacaaagcaatcagcccttagatgcacaaccacttatccctaggcttt Alignment from Spaln_nt2Genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG ctttgtaagattaagtttattttgtagcagcctttgttttcttcctgcagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGATAAGTCCAAAGAGTGTGACCCCCATGGCTCTGCAGAGTCACAAAAGGCATTTGACCATGGGACAGAGCTTATTCCATGGCATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCTACAGTCATTCACTAT---CAGGACACACACCTTTCTG---GGTGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCAAAACTTGGAGTGCTTAGT---ATGACAGA---AGGTGAGTTTCCATCACCAGGCAATGCCACTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTTGGTAAAAGCCATTCATATGGGACACCATGGTTTTGACACACATACTGTATGTGTGCAAAATAAGCTTGTCAGCATGCTTCTGTCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAAAAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACATTGTTCAGTG---TGCTGGATCTAACCACCACAGTCAGGAAGATCAGAAGGTTCCCTGAGCAATGTTTACAGTGGCTTCGGAAGCAGTATGTTA---TCTACCAGgtaacaaagcaatcagcccttagatgcacaaccacttatccctaggcttt Alignment from Pairagon GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCA-------AGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG ctttgtaagattaagtttattttgtagcagcctttgttttcttcctgcagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGATAAGTCCAAAGAGTGTGACCCCCATGGCTCTGCAGAGTCACAAAAGGCATTTGACCATGGGACAGAGCTTATTCCATGGCATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCTACAGTCATTCACTAT---CAGGACACACACCTTTCTG---GGTGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCAAAACTTGGAGTGCTTAGTA-------------TGACAGAAGGTGAGTTTCCATCACCAGGCAATGCCACTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTTGGTAAAAGCCATTCATATGGGACACCATGGTTTTGACACACATACTGTATGTGTGCAAAATAAGCTTGTCAGCATGCTTCTGTCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAAAAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACATTGTTCAGTG---TGCTGGATCTAACCACCACAGTCAGGAAGATCAGAAGGTTCCCTGAGCAATGTTTACAGTGGCTTCGGAAGCAGTATGTTA---TCTACCAGgtaacaaagcaatcagcccttagatgcacaaccacttatccctaggcttt Alignment from Exonerate_protein2genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG ctttgtaagattaagtttattttgtagcagcctttgttttcttcctgcagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGATAAGTCCAAAGAGTGTGACCCCCATGGCTCTGCAGAGTCACAAAAGGCATTTGACCATGGGACAGAGCTTATTCCATGGCATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCTACAGTCATTCACTAT---CAGGACACACACCTTTCTGGG---TGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCAAAACTTGGAGTGCTTAGT---ATGACAGAA---GGTGAGTTTCCATCACCAGGCAATGCCACTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTTGGTAAAAGCCATTCATATGGGACACCATGGTTTTGACACACATACTGTATGTGTGCAAAATAAGCTTGTCAGCATGCTTCTGTCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAAAAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACATTGTTCAGT---GTGCTGGATCTAACCACCACAGTCAGGAAGATCAGAAGGTTCCCTGAGCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaacaaagcaatcagcccttagatgcacaaccacttatccctaggcttt Alignment from Exonerate_coding2genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG ctttgtaagattaagtttattttgtagcagcctttgttttcttcctgcagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGATAAGTCCAAAGAGTGTGACCCCCATGGCTCTGCAGAGTCACAAAAGGCATTTGACCATGGGACAGAGCTTATTCCATGGCATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCTACAGTCATTCACTAT---CAGGACACACACCTTTCTGGG---TGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCAAAACTTGGAGTGCTTAGT---ATGACAGAA---GGTGAGTTTCCATCACCAGGCAATGCCACTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTTGGTAAAAGCCATTCATATGGGACACCATGGTTTTGACACACATACTGTATGTGTGCAAAATAAGCTTGTCAGCATGCTTCTGTCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAAAAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACATTGTTCAGT---GTGCTGGATCTAACCACCACAGTCAGGAAGATCAGAAGGTTCCCTGAGCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaacaaagcaatcagcccttagatgcacaaccacttatccctaggcttt Alignment from GeneWise GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG ctttgtaagattaagtttattttgtagcagcctttgttttcttcctgcagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGATAAGTCCAAAGAGTGTGACCCCCATGGCTCTGCAGAGTCACAAAAGGCATTTGACCATGGGACAGAGCTTATTCCATGGCATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCTACAGTCATTCACTAT---CAGGACACACACCTTTCTGGG---TGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCAAAACTTGGAGTGCTTAGT---ATGACAGAA---GGTGAGTTTCCATCACCAGGCAATGCCACTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTTGGTAAAAGCCATTCATATGGGACACCATGGTTTTGACACACATACTGTATGTGTGCAAAATAAGCTTGTCAGCATGCTTCTGTCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAAAAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACATTGTTCAGT---GTGCTGGATCTAACCACCACAGTCAGGAAGATCAGAAGGTTCCCTGAGCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaacaaagcaatcagcccttagatgcacaaccacttatccctaggcttt #### Plce1_ID7623_9 --> 0 - 1 Original Alignment GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGg gttgttgtcattttagacctcagataggcggctctgccttgtctttgcagGGTGAAAGTAGAGATGTGACAGATGATGAAATGGCTACTCAAAAGGCTAAAATGTATAGAGAATGCCATAGCCGGACAGGCTCAGGTCCTCAAGATGCCAATGGCCAAAAAGAGCTTggtgaggtgaaatgcctcaagcaggattgaaaccttaattagttattattg Alignment from CESAR GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGg gttgttgtcattttagacctcagataggcggctctgccttgtctttgcagGGTGAAAGTAGAGATGTGACAGATGATGAAATGGCTACTCAAAAGGCTAAAATGTATAGAGAATGCCATAGCCGGACAGGCTCAGGTCCTCAAGATGCCAATGGCCAAAAAGAGCTTggtgaggtgaaatgcctcaagcaggattgaaaccttaattagttattattg Alignment from Spaln_aa2Genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG gttgttgtcattttagacctcagataggcggctctgccttgtctttgcagGGTGAAAGTAGAGATGTGACAGATGATGAAATGGCTACTCAAAAGGCTAAAATGTATAGAGAATGCCATAGCCGGACAGGCTCAGGTCCTCAAGATGCCAATGGCCAAAAAGAGCTTGgtgaggtgaaatgcctcaagcaggattgaaaccttaattagttattattg Alignment from Spaln_nt2Genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG gttgttgtcattttagacctcagataggcggctctgccttgtctttgcagGGTGAAAGTAGAGATGTGACAGATGATGAAATGGCTACTCAAAAGGCTAAAATGTATAGAGAATGCCATAGCCGGACAGGCTCAGGTCCTCAAGATGCCAATGGCCAAAAAGAGCTTGgtgaggtgaaatgcctcaagcaggattgaaaccttaattagttattattg Alignment from Pairagon GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG gttgttgtcattttagacctcagataggcggctctgccttgtctttgcagGGTGAAAGTAGAGATGTGACAGATGATGAAATGGCTACTCAAAAGGCTAAAATGTATAGAGAATGCCATAGCCGGACAGGCTCAGGTCCTCAAGATGCCAATGGCCAAAAAGAGCTTGgtgaggtgaaatgcctcaagcaggattgaaaccttaattagttattattg Alignment from Exonerate_protein2genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG gttgttgtcattttagacctcagataggcggctctgccttgtctttgcagGGTGAAAGTAGAGATGTGACAGATGATGAAATGGCTACTCAAAAGGCTAAAATGTATAGAGAATGCCATAGCCGGACAGGCTCAGGTCCTCAAGATGCCAATGGCCAAAAAGAGCTTGgtgaggtgaaatgcctcaagcaggattgaaaccttaattagttattattg Alignment from Exonerate_coding2genome gttgttgtcattttagacctcagataggcggctctgccttgtctttgcagggtgaaagtagagatgtgacagatgatgaaatggctactcaaaaggctaaaatgtatagagaatgccatagccggacaggctcaggtcctcaagatgccaatggccaaaaagagcttggtgaggtgaaatgcctcaagcaggattgaaaccttaattagttattattg Alignment from GeneWise GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG gttgttgtcattttagacctcagataggcggctctgccttgtctttgcagGGTGAAAGTAGAGATGTGACAGATGATGAAATGGCTACTCAAAAGGCTAAAATGTATAGAGAATGCCATAGCCGGACAGGCTCAGGTCCTCAAGATGCCAATGGCCAAAAAGAGCTTGgtgaggtgaaatgcctcaagcaggattgaaaccttaattagttattattg #### Plce1_ID7625_11 --> 1 - 2 Original Alignment tGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCag ttcgaaatgtaatgagttttatgagaagatgtctctgtctcatctcacagtGCTTGGAGCGGTAGCAGCTGGCATGGCCTGATTAGAGGAGTAATGCAGGGTTTCCAGTGCTTCATGGTCTCGGATAGCAACATGAGCTTTGTTGAATTTCTTGACCTTTTCAAATCATTCaggtgagtctgtggccccttgatagacaaggtgtagaatgttcccttacata Alignment from CESAR tGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCag ttcgaaatgtaatgagttttatgagaagatgtctctgtctcatctcacagtGCTTGGAGCGGTAGCAGCTGGCATGGCCTGATTAGAGGAGTAATGCAGGGTTTCCAGTGCTTCATGGTCTCGGATAGCAACATGAGCTTTGTTGAATTTCTTGACCTTTTCAAATCATTCaggtgagtctgtggccccttgatagacaaggtgtagaatgttcccttacata Alignment from Spaln_aa2Genome TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG ttcgaaatgtaatgagttttatgagaagatgtctctgtctcatctcacagTGCTTGGAGCGGTAGCAGCTGGCATGGCCTGATTAGAGGAGTAATGCAGGGTTTCCAGTGCTTCATGGTCTCGGATAGCAACATGAGCTTTGTTGAATTTCTTGACCTTTTCAAATCATTCAGgtgagtctgtggccccttgatagacaaggtgtagaatgttcccttacata Alignment from Spaln_nt2Genome TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG ttcgaaatgtaatgagttttatgagaagatgtctctgtctcatctcacagTGCTTGGAGCGGTAGCAGCTGGCATGGCCTGATTAGAGGAGTAATGCAGGGTTTCCAGTGCTTCATGGTCTCGGATAGCAACATGAGCTTTGTTGAATTTCTTGACCTTTTCAAATCATTCAGgtgagtctgtggccccttgatagacaaggtgtagaatgttcccttacata Alignment from Pairagon TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG ttcgaaatgtaatgagttttatgagaagatgtctctgtctcatctcacagTGCTTGGAGCGGTAGCAGCTGGCATGGCCTGATTAGAGGAGTAATGCAGGGTTTCCAGTGCTTCATGGTCTCGGATAGCAACATGAGCTTTGTTGAATTTCTTGACCTTTTCAAATCATTCAGgtgagtctgtggccccttgatagacaaggtgtagaatgttcccttacata Alignment from Exonerate_protein2genome TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG ttcgaaatgtaatgagttttatgagaagatgtctctgtctcatctcacagTGCTTGGAGCGGTAGCAGCTGGCATGGCCTGATTAGAGGAGTAATGCAGGGTTTCCAGTGCTTCATGGTCTCGGATAGCAACATGAGCTTTGTTGAATTTCTTGACCTTTTCAAATCATTCAGgtgagtctgtggccccttgatagacaaggtgtagaatgttcccttacata Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG ttcgaaatgtaatgagttttatgagaagatgtctctgtctcatctcacagTGCTTGGAGCGGTAGCAGCTGGCATGGCCTGATTAGAGGAGTAATGCAGGGTTTCCAGTGCTTCATGGTCTCGGATAGCAACATGAGCTTTGTTGAATTTCTTGACCTTTTCAAATCATTCAGgtgagtctgtggccccttgatagacaaggtgtagaatgttcccttacata #### Plce1_ID7633_16 --> 0 - 0 Original Alignment GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG ccccggtaccatctgtcacacacttctttttctattccactctggccaagATCCTCCTACAAGGTTGTAGAAGCATAAAACTGGACTGCTGGGATGGCGATGATGGCATGCCCAGTATTTACTATGGACATACATTGACAACGGAAATCCCCTTCAAGgtaagggccacagtgaaccccacagcataatcctgagcaagtatggggtc Alignment from CESAR GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG ccccggtaccatctgtcacacacttctttttctattccactctggccaagATCCTCCTACAAGGTTGTAGAAGCATAAAACTGGACTGCTGGGATGGCGATGATGGCATGCCCAGTATTTACTATGGACATACATTGACAACGGAAATCCCCTTCAAGgtaagggccacagtgaaccccacagcataatcctgagcaagtatggggtc Alignment from Spaln_aa2Genome GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG ccccggtaccatctgtcacacacttctttttctattccactctggccaagATCCTCCTACAAGGTTGTAGAAGCATAAAACTGGACTGCTGGGATGGCGATGATGGCATGCCCAGTATTTACTATGGACATACATTGACAACGGAAATCCCCTTCAAGgtaagggccacagtgaaccccacagcataatcctgagcaagtatggggtc Alignment from Spaln_nt2Genome GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG ccccggtaccatctgtcacacacttctttttctattccactctggccaagATCCTCCTACAAGGTTGTAGAAGCATAAAACTGGACTGCTGGGATGGCGATGATGGCATGCCCAGTATTTACTATGGACATACATTGACAACGGAAATCCCCTTCAAGgtaagggccacagtgaaccccacagcataatcctgagcaagtatggggtc Alignment from Pairagon GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG ccccggtaccatctgtcacacacttctttttctattccactctggccaagATCCTCCTACAAGGTTGTAGAAGCATAAAACTGGACTGCTGGGATGGCGATGATGGCATGCCCAGTATTTACTATGGACATACATTGACAACGGAAATCCCCTTCAAGgtaagggccacagtgaaccccacagcataatcctgagcaagtatggggtc Alignment from Exonerate_protein2genome GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG ccccggtaccatctgtcacacacttctttttctattccactctggccaagATCCTCCTACAAGGTTGTAGAAGCATAAAACTGGACTGCTGGGATGGCGATGATGGCATGCCCAGTATTTACTATGGACATACATTGACAACGGAAATCCCCTTCAAGgtaagggccacagtgaaccccacagcataatcctgagcaagtatggggtc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG ccccggtaccatctgtcacacacttctttttctattccactctggccaagATCCTCCTACAAGGTTGTAGAAGCATAAAACTGGACTGCTGGGATGGCGATGATGGCATGCCCAGTATTTACTATGGACATACATTGACAACGGAAATCCCCTTCAAGgtaagggccacagtgaaccccacagcataatcctgagcaagtatggggtc #### Plce1_ID7636_19 --> 0 - 1 Original Alignment GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATg cccttgcttaacacacttgatttttgtgtggtaatcatttttgtttgtagGCATGCCAGCTAGCACCTATGCAAGCACAGGCTGTCACTGGTGGCAATGCAAATACACCACCTGCAAGTAATGAAGAAGAGGCAGATGAGGAAGATGAATATGACTATGATTATAAGTCATTTTCTGATggtgatggtgaatagtgtgacatggagacttagtgctatatggggaaaagc Alignment from CESAR GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATg cccttgcttaacacacttgatttttgtgtggtaatcatttttgtttgtagGCATGCCAGCTAGCACCTATGCAAGCACAGGCTGTCACTGGTGGCAATGCAAATACACCACCTGCAAGTAATGAAGAAGAGGCAGATGAGGAAGATGAATATGACTATGATTATAAGTCATTTTCTGATggtgatggtgaatagtgtgacatggagacttagtgctatatggggaaaagc Alignment from Spaln_aa2Genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG cccttgcttaacacacttgatttttgtgtggtaatcatttttgtttgtagGCATGCCAGCTAGCACCTATGCAAGCACAGGCTGTCACTGGTGGCAATGCAAATACACCACCTGCAAGTAATGAAGAAGAGGCAGATGAGGAAGATGAATATGACTATGATTATAAGTCATTTTCTGATGgtgatggtgaatagtgtgacatggagacttagtgctatatggggaaaagc Alignment from Spaln_nt2Genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG cccttgcttaacacacttgatttttgtgtggtaatcatttttgtttgtagGCATGCCAGCTAGCACCTATGCAAGCACAGGCTGTCACTGGTGGCAATGCAAATACACCACCTGCAAGTAATGAAGAAGAGGCAGATGAGGAAGATGAATATGACTATGATTATAAGTCATTTTCTGATGgtgatggtgaatagtgtgacatggagacttagtgctatatggggaaaagc Alignment from Pairagon GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG cccttgcttaacacacttgatttttgtgtggtaatcatttttgtttgtagGCATGCCAGCTAGCACCTATGCAAGCACAGGCTGTCACTGGTGGCAATGCAAATACACCACCTGCAAGTAATGAAGAAGAGGCAGATGAGGAAGATGAATATGACTATGATTATAAGTCATTTTCTGATGgtgatggtgaatagtgtgacatggagacttagtgctatatggggaaaagc Alignment from Exonerate_protein2genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG cccttgcttaacacacttgatttttgtgtggtaatcatttttgtttgtagGCATGCCAGCTAGCACCTATGCAAGCACAGGCTGTCACTGGTGGCAATGCAAATACACCACCTGCAAGTAATGAAGAAGAGGCAGATGAGGAAGATGAATATGACTATGATTATAAGTCATTTTCTGATGgtgatggtgaatagtgtgacatggagacttagtgctatatggggaaaagc Alignment from Exonerate_coding2genome cccttgcttaacacacttgatttttgtgtggtaatcatttttgtttgtaggcatgccagctagcacctatgcaagcacaggctgtcactggtggcaatgcaaatacaccacctgcaagtaatgaagaagaggcagatgaggaagatgaatatgactatgattataagtcattttctgatggtgatggtgaatagtgtgacatggagacttagtgctatatggggaaaagc Alignment from GeneWise GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG cccttgcttaacacacttgatttttgtgtggtaatcatttttgtttgtagGCATGCCAGCTAGCACCTATGCAAGCACAGGCTGTCACTGGTGGCAATGCAAATACACCACCTGCAAGTAATGAAGAAGAGGCAGATGAGGAAGATGAATATGACTATGATTATAAGTCATTTTCTGATGgtgatggtgaatagtgtgacatggagacttagtgctatatggggaaaagc #### Plce1_ID7642_24 --> 2 - 0 Original Alignment acCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT atggtccagccttctttagataaactgtgcttacaccaacttccccgcagacCTTCCTTCACATTTAAATGCTGCGACATTTCAGGCAAATGGTGGTTGCGGATATGTCTTGAAAACTCCAGTCTTGTGGGAGAAGAGCTATCTCATGTACCAGAAGTTTTCTCCTTTGGGGCGAGACCTAGACAATGTTGAT---------------CTGACTgtgagtacaattccatgtttgcaatgcacatcacaactgcacatactacc Alignment from CESAR acCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT atggtccagccttctttagataaactgtgcttacaccaacttccccgcagacCTTCCTTCACATTTAAATGCTGCGACATTTCAGGCAAATGGTGGTTGCGGATATGTCTTGAAAACTCCAGTCTTGTGGGAGAAGAGCTATCTCATGTACCAGAAGTTTTCTCCTTTGGGGCGAGACCTAGACAATGTTGAT---------------CTGACTgtgagtacaattccatgtttgcaatgcacatcacaactgcacatactacc Alignment from Spaln_aa2Genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT atggtccagccttctttagataaactgtgcttacaccaacttccccgcagACCTTCCTTCACATTTAAATGCTGCGACATTTCAGGCAAATGGTGGTTGCGGATATGTCTTGAAAACTCCAGTCTTGTGGGAGAAGAGCTATCTCATGTACCAGAAGTTTTCTCCTTTGGGGCGAGACCTAGACAATGTTGAT---------------CTGACTgtgagtacaattccatgtttgcaatgcacatcacaactgcacatactacc Alignment from Spaln_nt2Genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAAC-T atggtccagccttctttagataaactgtgcttacaccaacttccccgcagACCTTCCTTCACATTTAAATGCTGCGACATTTCAGGCAAATGGTGGTTGCGGATATGTCTTGAAAACTCCAGTCTTGTGGGAGAAGAGCTATCTCATGTACCAGAAGTTTTCTCCTTTGGGGCGAGACCTAGACAATGTTGATCTGACTGTGAGTACAATTCCATgtttgcaatgcacatcacaactgcacatactacc Alignment from Pairagon ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT atggtccagccttctttagataaactgtgcttacaccaacttccccgcagACCTTCCTTCACATTTAAATGCTGCGACATTTCAGGCAAATGGTGGTTGCGGATATGTCTTGAAAACTCCAGTCTTGTGGGAGAAGAGCTATCTCATGTACCAGAAGTTTTCTCCTTTGGGGCGAGACCTAGACAATGTTGATC---------------TGACTgtgagtacaattccatgtttgcaatgcacatcacaactgcacatactacc Alignment from Exonerate_protein2genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCT atggtccagccttctttagataaactgtgcttacaccaacttccccgcagACCTTCCTTCACATTTAAATGCTGCGACATTTCAGGCAAATGGTGGTTGCGGATATGTCTTGAAAACTCCAGTCTTGTGGGAGAAGAGCTATCTCATGTACCAGAAGTTTTCTCCTTTGGGGCGAGACCTAGACAATGTTGATCTGACTgtgagtacaattccatgtttgcaatgcacatcacaactgcacatactacc Alignment from Exonerate_coding2genome atggtccagccttctttagataaactgtgcttacaccaacttccccgcagaccttccttcacatttaaatgctgcgacatttcaggcaaatggtggttgcggatatgtcttgaaaactccagtcttgtgggagaagagctatctcatgtaccagaagttttctcctttggggcgagacctagacaatgttgatctgactgtgagtacaattccatgtttgcaatgcacatcacaactgcacatactacc Alignment from GeneWise ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT atggtccagccttctttagataaactgtgcttacaccaacttccccgcagACCTTCCTTCACATTTAAATGCTGCGACATTTCAGGCAAATGGTGGTTGCGGATATGTCTTGAAAACTCCAGTCTTGTGGGAGAAGAGCTATCTCATGTACCAGAAGTTTTCTCCTTTGGGGCGAGACCTAGACAATGTTGAT---------------CTGACTgtgagtacaattccatgtttgcaatgcacatcacaactgcacatactacc #### Plekhs1_ID12100_5 --> 1 - 0 Original Alignment gGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG accaaacagcttggtggtcacacattactgtcccgcttgttcccacccagaCAAAAGATCAAAGACTGGGGTTCCTTTATGACACCTTATTGTCGGGGTGTTAAAGCAACTTATGAAAGAGCAGAGgtaaggctcaatccttaggcagtatttagccattgtcataggtcttttgc Alignment from CESAR gGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG accaaacagcttggtggtcacacattactgtcccgcttgttcccacccagaCAAAAGATCAAAGACTGGGGTTCCTTTATGACACCTTATTGTCGGGGTGTTAAAGCAACTTATGAAAGAGCAGAGgtaaggctcaatccttaggcagtatttagccattgtcataggtcttttgc Alignment from Spaln_aa2Genome GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG accaaacagcttggtggtcacacattactgtcccgcttgttcccacccagACAAAAGATCAAAGACTGGGGTTCCTTTATGACACCTTATTGTCGGGGTGTTAAAGCAACTTATGAAAGAGCAGAGgtaaggctcaatccttaggcagtatttagccattgtcataggtcttttgc Alignment from Spaln_nt2Genome GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG accaaacagcttggtggtcacacattactgtcccgcttgttcccacccagACAAAAGATCAAAGACTGGGGTTCCTTTATGACACCTTATTGTCGGGGTGTTAAAGCAACTTATGAAAGAGCAGAGgtaaggctcaatccttaggcagtatttagccattgtcataggtcttttgc Alignment from Pairagon GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG accaaacagcttggtggtcacacattactgtcccgcttgttcccacccagACAAAAGATCAAAGACTGGGGTTCCTTTATGACACCTTATTGTCGGGGTGTTAAAGCAACTTATGAAAGAGCAGAGgtaaggctcaatccttaggcagtatttagccattgtcataggtcttttgc Alignment from Exonerate_protein2genome GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG accaaacagcttggtggtcacacattactgtcccgcttgttcccacccagACAAAAGATCAAAGACTGGGGTTCCTTTATGACACCTTATTGTCGGGGTGTTAAAGCAACTTATGAAAGAGCAGAGgtaaggctcaatccttaggcagtatttagccattgtcataggtcttttgc Alignment from Exonerate_coding2genome GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG accaaacagcttggtggtcacacattactgtcccgcttgttcccacccagACAAAAGATCAAAGACTGGGGTTCCTTTATGACACCTTATTGTCGGGGTGTTAAAGCAACTTATGAAAGAGCAGAGgtaaggctcaatccttaggcagtatttagccattgtcataggtcttttgc Alignment from GeneWise GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG accaaacagcttggtggtcacacattactgtcccgcttgttcccacccagACAAAAGATCAAAGACTGGGGTTCCTTTATGACACCTTATTGTCGGGGTGTTAAAGCAACTTATGAAAGAGCAGAGgtaaggctcaatccttaggcagtatttagccattgtcataggtcttttgc #### Plgrkt_ID6259_3 --> 1 - 1 Original Alignment aGCACTAAAGCGAAAGAAGCCAGCCTTTCTCGTTCCTATAGTCCCGCTAAGC------TTCATCTTCACCTACCAGTATGACCTGGGCTACGGAACTCTCCTACAGAGAATGAAAa atagatatatcagggtattatgaatcaactcatttgaacccttccttcagtGCACTGAAACAAAAAAAGCCAGCCTTTCTAGTACCAATAGTCCCACTAAGTTTAAGTTTCATTTTTACTTACCAGTATGATCTAGGCTATGGTACTCTCTTACAGAGAATGAGAagtaccactctcccaaacttcagcctgtatccacagatagcaacaccatct Alignment from CESAR aGCACTAAAGCGAAAGAAGCCAGCCTTTCTCGTTCCTATAGTCCCGCTA------AGCTTCATCTTCACCTACCAGTATGACCTGGGCTACGGAACTCTCCTACAGAGAATGAAAa atagatatatcagggtattatgaatcaactcatttgaacccttccttcagtGCACTGAAACAAAAAAAGCCAGCCTTTCTAGTACCAATAGTCCCACTAAGTTTAAGTTTCATTTTTACTTACCAGTATGATCTAGGCTATGGTACTCTCTTACAGAGAATGAGAagtaccactctcccaaacttcagcctgtatccacagatagcaacaccatct Alignment from Spaln_aa2Genome AGCACTAAAGCGAAAGAAGCCAGCCTTTCTCGTTCCTATAGTCCCG------CTAAGCTTCATCTTCACCTACCAGTATGACCTGGGCTACGGAACTCTCCTACAGAGAATGAAAA atagatatatcagggtattatgaatcaactcatttgaacccttccttcagTGCACTGAAACAAAAAAAGCCAGCCTTTCTAGTACCAATAGTCCCACTAAGTTTAAGTTTCATTTTTACTTACCAGTATGATCTAGGCTATGGTACTCTCTTACAGAGAATGAGAAgtaccactctcccaaacttcagcctgtatccacagatagcaacaccatct Alignment from Spaln_nt2Genome AGCACTAAAGCGAAAGAAGCCAGCCTTTCTCGTTCCTATAGTCCCGCTAAGCTT------CATCTTCACCTACCAGTATGACCTGGGCTACGGAACTCTCCTACAGAGAATGAAAA atagatatatcagggtattatgaatcaactcatttgaacccttccttcagTGCACTGAAACAAAAAAAGCCAGCCTTTCTAGTACCAATAGTCCCACTAAGTTTAAGTTTCATTTTTACTTACCAGTATGATCTAGGCTATGGTACTCTCTTACAGAGAATGAGAAgtaccactctcccaaacttcagcctgtatccacagatagcaacaccatct Alignment from Pairagon AGCACTAAAGCGAAAGAAGCCAGCCTTTCTCGTTCCTATAGTCCCGCTAAG------CTTCATCTTCACCTACCAGTATGACCTGGGCTACGGAACTCTCCTACAGAGAATGAAAA atagatatatcagggtattatgaatcaactcatttgaacccttccttcagTGCACTGAAACAAAAAAAGCCAGCCTTTCTAGTACCAATAGTCCCACTAAGTTTAAGTTTCATTTTTACTTACCAGTATGATCTAGGCTATGGTACTCTCTTACAGAGAATGAGAAgtaccactctcccaaacttcagcctgtatccacagatagcaacaccatct Alignment from Exonerate_protein2genome AGCACTAAAGCGAAAGAAGCCAGCCTTTCTCGTTCCTATAGTCCCG------CTAAGCTTCATCTTCACCTACCAGTATGACCTGGGCTACGGAACTCTCCTACAGAGAATGAAAA atagatatatcagggtattatgaatcaactcatttgaacccttccttcagTGCACTGAAACAAAAAAAGCCAGCCTTTCTAGTACCAATAGTCCCACTAAGTTTAAGTTTCATTTTTACTTACCAGTATGATCTAGGCTATGGTACTCTCTTACAGAGAATGAGAAgtaccactctcccaaacttcagcctgtatccacagatagcaacaccatct Alignment from Exonerate_coding2genome AGCACTAAAGCGAAAGAAGCCAGCCTTTCTCGTTCCTATAGTCCCG------CTAAGCTTCATCTTCACCTACCAGTATGACCTGGGCTACGGAACTCTCCTACAGAGAATGAAAA atagatatatcagggtattatgaatcaactcatttgaacccttccttcagTGCACTGAAACAAAAAAAGCCAGCCTTTCTAGTACCAATAGTCCCACTAAGTTTAAGTTTCATTTTTACTTACCAGTATGATCTAGGCTATGGTACTCTCTTACAGAGAATGAGAAgtaccactctcccaaacttcagcctgtatccacagatagcaacaccatct Alignment from GeneWise AGCACTAAAGCGAAAGAAGCCAGCCTTTCTCGTTCCTATAGTCCCGCTAAGC------TTCATCTTCACCTACCAGTATGACCTGGGCTACGGAACTCTCCTACAGAGAATGAAAA atagatatatcagggtattatgaatcaactcatttgaacccttccttcagTGCACTGAAACAAAAAAAGCCAGCCTTTCTAGTACCAATAGTCCCACTAAGTTTAAGTTTCATTTTTACTTACCAGTATGATCTAGGCTATGGTACTCTCTTACAGAGAATGAGAAgtaccactctcccaaacttcagcctgtatccacagatagcaacaccatct #### Pnlip_ID12747_6 --> 2 - 1 Original Alignment ggTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAg ttctttaccccctctatcaagtaaggttctgtctgccctctttcctgcagggCTAGACCCTGCCGAGTCATATTTCCAGGGCACACCAGAAGAAGTCCGTCTGGACCCCACTCATGCCCAGTTCGTGGATGCAATCCATGCGGATGCCGGACACATTGTCCCTAACTTAggtaggatcatgtagccatctagtggcacaacatatttgctggccagataa Alignment from CESAR ggTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAg ttctttaccccctctatcaagtaaggttctgtctgccctctttcctgcagggCTAGACCCTGCCGAGTCATATTTCCAGGGCACACCAGAAGAAGTCCGTCTGGACCCCACTCATGCCCAGTTCGTGGATGCAATCCATGCGGATGCCGGACACATTGTCCCTAACTTAggtaggatcatgtagccatctagtggcacaacatatttgctggccagataa Alignment from Spaln_aa2Genome GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG ttctttaccccctctatcaagtaaggttctgtctgccctctttcctgcagGGCTAGACCCTGCCGAGTCATATTTCCAGGGCACACCAGAAGAAGTCCGTCTGGACCCCACTCATGCCCAGTTCGTGGATGCAATCCATGCGGATGCCGGACACATTGTCCCTAACTTAGgtaggatcatgtagccatctagtggcacaacatatttgctggccagataa Alignment from Spaln_nt2Genome GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG ttctttaccccctctatcaagtaaggttctgtctgccctctttcctgcagGGCTAGACCCTGCCGAGTCATATTTCCAGGGCACACCAGAAGAAGTCCGTCTGGACCCCACTCATGCCCAGTTCGTGGATGCAATCCATGCGGATGCCGGACACATTGTCCCTAACTTAGgtaggatcatgtagccatctagtggcacaacatatttgctggccagataa Alignment from Pairagon GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG ttctttaccccctctatcaagtaaggttctgtctgccctctttcctgcagGGCTAGACCCTGCCGAGTCATATTTCCAGGGCACACCAGAAGAAGTCCGTCTGGACCCCACTCATGCCCAGTTCGTGGATGCAATCCATGCGGATGCCGGACACATTGTCCCTAACTTAGgtaggatcatgtagccatctagtggcacaacatatttgctggccagataa Alignment from Exonerate_protein2genome GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG ttctttaccccctctatcaagtaaggttctgtctgccctctttcctgcagGGCTAGACCCTGCCGAGTCATATTTCCAGGGCACACCAGAAGAAGTCCGTCTGGACCCCACTCATGCCCAGTTCGTGGATGCAATCCATGCGGATGCCGGACACATTGTCCCTAACTTAGgtaggatcatgtagccatctagtggcacaacatatttgctggccagataa Alignment from Exonerate_coding2genome GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG ttctttaccccctctatcaagtaaggttctgtctgccctctttcctgcagGGCTAGACCCTGCCGAGTCATATTTCCAGGGCACACCAGAAGAAGTCCGTCTGGACCCCACTCATGCCCAGTTCGTGGATGCAATCCATGCGGATGCCGGACACATTGTCCCTAACTTAGgtaggatcatgtagccatctagtggcacaacatatttgctggccagataa Alignment from GeneWise GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG ttctttaccccctctatcaagtaaggttctgtctgccctctttcctgcagGGCTAGACCCTGCCGAGTCATATTTCCAGGGCACACCAGAAGAAGTCCGTCTGGACCCCACTCATGCCCAGTTCGTGGATGCAATCCATGCGGATGCCGGACACATTGTCCCTAACTTAGgtaggatcatgtagccatctagtggcacaacatatttgctggccagataa #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG atgaaagcccagttaacatggactggacagtgacactggaaccctactagggAAAGAATTTTGTTATCACAACCTTGGGTGCTTCTCTGATGCAGAACCCTGGGCAGGCACAGCCAACAGACCTTTAAAACTCCTACCATGGAGTCCAGAGAAGATCAACACCTGCTTCTTACTCTACACAAACGAGAAGCCCATTGCATTCCAGgtaatgactgtaggtccagatgagaaccaggttaccctatcgctttaaca Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG atgaaagcccagttaacatggactggacagtgacactggaaccctactagggAAAGAATTTTGTTATCACAACCTTGGGTGCTTCTCTGATGCAGAACCCTGGGCAGGCACAGCCAACAGACCTTTAAAACTCCTACCATGGAGTCCAGAGAAGATCAACACCTGCTTCTTACTCTACACAAACGAGAAGCCCATTGCATTCCAGgtaatgactgtaggtccagatgagaaccaggttaccctatcgctttaaca Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG atgaaagcccagttaacatggactggacagtgacactggaaccctactagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTCTCTGATGCAGAACCCTGGGCAGGCACAGCCAACAGACCTTTAAAACTCCTACCATGGAGTCCAGAGAAGATCAACACCTGCTTCTTACTCTACACAAACGAGAAGCCCATTGCATTCCAGgtaatgactgtaggtccagatgagaaccaggttaccctatcgctttaaca Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG atgaaagcccagttaacatggactggacagtgacactggaaccctactagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTCTCTGATGCAGAACCCTGGGCAGGCACAGCCAACAGACCTTTAAAACTCCTACCATGGAGTCCAGAGAAGATCAACACCTGCTTCTTACTCTACACAAACGAGAAGCCCATTGCATTCCAGgtaatgactgtaggtccagatgagaaccaggttaccctatcgctttaaca Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG atgaaagcccagttaacatggactggacagtgacactggaaccctactagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTCTCTGATGCAGAACCCTGGGCAGGCACAGCCAACAGACCTTTAAAACTCCTACCATGGAGTCCAGAGAAGATCAACACCTGCTTCTTACTCTACACAAACGAGAAGCCCATTGCATTCCAGgtaatgactgtaggtccagatgagaaccaggttaccctatcgctttaaca Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG atgaaagcccagttaacatggactggacagtgacactggaaccctactagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTCTCTGATGCAGAACCCTGGGCAGGCACAGCCAACAGACCTTTAAAACTCCTACCATGGAGTCCAGAGAAGATCAACACCTGCTTCTTACTCTACACAAACGAGAAGCCCATTGCATTCCAGgtaatgactgtaggtccagatgagaaccaggttaccctatcgctttaaca Alignment from Exonerate_coding2genome GGAGCAGCTCAGGGGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG atgaaagcccagttaacatggactggacagtgacactGGAACCCTACTAGGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTCTCTGATGCAGAACCCTGGGCAGGCACAGCCAACAGACCTTTAAAACTCCTACCATGGAGTCCAGAGAAGATCAACACCTGCTTCTTACTCTACACAAACGAGAAGCCCATTGCATTCCAGgtaatgactgtaggtccagatgagaaccaggttaccctatcgctttaaca Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG atgaaagcccagttaacatggactggacagtgacactggaaccctactagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTCTCTGATGCAGAACCCTGGGCAGGCACAGCCAACAGACCTTTAAAACTCCTACCATGGAGTCCAGAGAAGATCAACACCTGCTTCTTACTCTACACAAACGAGAAGCCCATTGCATTCCAGgtaatgactgtaggtccagatgagaaccaggttaccctatcgctttaaca #### Pnliprp1_ID12770_7 --> 2 - 1 Original Alignment gcTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAg ggtctctgtatactggtggaccagcatcttatttaatttttcccttacagggTTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAggtaggccaaaccaccctctcaaatcaccctctcataatgatggagattga Alignment from CESAR gcTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAg ggtctctgtatactggtggaccagcatcttatttaatttttcccttacagggTTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAggtaggccaaaccaccctctcaaatcaccctctcataatgatggagattga Alignment from Spaln_aa2Genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactggtggaccagcatcttatttaatttttcccttacagGGTTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaggccaaaccaccctctcaaatcaccctctcataatgatggagattga Alignment from Spaln_nt2Genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactggtggaccagcatcttatttaatttttcccttacagGGTTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaggccaaaccaccctctcaaatcaccctctcataatgatggagattga Alignment from Pairagon GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactggtggaccagcatcttatttaatttttcccttacagGGTTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaggccaaaccaccctctcaaatcaccctctcataatgatggagattga Alignment from Exonerate_protein2genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactggtggaccagcatcttatttaatttttcccttacagGGTTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaggccaaaccaccctctcaaatcaccctctcataatgatggagattga Alignment from Exonerate_coding2genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactggtggaccagcatcttatttaatttttcccttacagGGTTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaggccaaaccaccctctcaaatcaccctctcataatgatggagattga Alignment from GeneWise GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactggtggaccagcatcttatttaatttttcccttacagGGTTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaggccaaaccaccctctcaaatcaccctctcataatgatggagattga #### Pnliprp2_ID12787_9 --> 0 - 1 Original Alignment AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTc ttggagtggaataagttgctgcttactaggaatactcttgtctgtgacagAATGACTGCTTCCCTTGCCCTGAGCATGGGTGCCCCAAT---AGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCCACTGCGGAACAAGCCTTTTTCCTAAACACAGGGGATAGCAGCAATTTCACCcgtaagtttccattttttgtttgtggtgtaatagcattggtgtcagcatgt Alignment from CESAR AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTc ttggagtggaataagttgctgcttactaggaatactcttgtctgtgacagAATGACTGCTTCCCTTGCCCTGAGCATGGGTGCCCCAAT---AGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCCACTGCGGAACAAGCCTTTTTCCTAAACACAGGGGATAGCAGCAATTTCACCcgtaagtttccattttttgtttgtggtgtaatagcattggtgtcagcatgt Alignment from Spaln_aa2Genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC ttggagtggaataagttgctgcttactaggaatactcttgtctgtgacagAATGACTGCTTCCCTTGCCCTGAGCATGGGTGCCCCAAT---AGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCCACTGCGGAACAAGCCTTTTTCCTAAACACAGGGGATAGCAGCAATTTCACCCgtaagtttccattttttgtttgtggtgtaatagcattggtgtcagcatgt Alignment from Spaln_nt2Genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC ttggagtggaataagttgctgcttactaggaatactcttgtctgtgacagAATGACTGCTTCCCTTGCCCTGAGCATGGGTGCCCCAATA---GTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCCACTGCGGAACAAGCCTTTTTCCTAAACACAGGGGATAGCAGCAATTTCACCCgtaagtttccattttttgtttgtggtgtaatagcattggtgtcagcatgt Alignment from Pairagon AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC ttggagtggaataagttgctgcttactaggaatactcttgtctgtgacagAATGACTGCTTCCCTTGCCCTGAGCATGGGTGCCCCAATA---GTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCCACTGCGGAACAAGCCTTTTTCCTAAACACAGGGGATAGCAGCAATTTCACCCgtaagtttccattttttgtttgtggtgtaatagcattggtgtcagcatgt Alignment from Exonerate_protein2genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTCGTTGGAGATACAAAGTATCAGTCA ttggagtggaataagttgctgcttactaggaatactcttgtctgtgacagAATGACTGCTTCCCTTGCCCTGAGCATGGGTGCCCCAAT---AGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCCACTGCGGAACAAGCCTTTTTCCTAAACACAGGGGATAGCAGCAATTTCACCCGTAAGTTTCCATTTTTTGTTTGTGgtgtaatagcattggtgtcagcatgt Alignment from Exonerate_coding2genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTCGT ttggagtggaataagttgctgcttactaggaatactcttgtctgtgacagAATGACTGCTTCCCTTGCCCTGAGCATGGGTGCCCCAAT---AGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCCACTGCGGAACAAGCCTTTTTCCTAAACACAGGGGATAGCAGCAATTTCACCCGTaagtttccattttttgtttgtggtgtaatagcattggtgtcagcatgt Alignment from GeneWise AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC ttggagtggaataagttgctgcttactaggaatactcttgtctgtgacagAATGACTGCTTCCCTTGCCCTGAGCATGGGTGCCCCAAT---AGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCCACTGCGGAACAAGCCTTTTTCCTAAACACAGGGGATAGCAGCAATTTCACCCgtaagtttccattttttgtttgtggtgtaatagcattggtgtcagcatgt #### Pnliprp2_ID12788_10 --> 2 - 2 Original Alignment gtTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCaa ttgattcagccaaatacaacggcgtgaagaatgattcttctctctgttaggtTGGAGTTATAAGGTATCAGTGACG---TCAGGCGCTAAG---------------------GTTGCACTGTATGGGTGCAATGGAAACTCAAAACAATATGAGGTCTTCaagtaagtttttaggtgcatatgtgctcatgggacaaaatctacccagggta Alignment from CESAR gtTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCaa ttgattcagccaaatacaacggcgtgaagaatgattcttctctctgttaggtTGGAGTTATAAGGTATCAGTGACG---TCAGGCGCTAAG---------------------GTTGCACTGTATGGGTGCAATGGAAACTCAAAACAATATGAGGTCTTCaagtaagtttttaggtgcatatgtgctcatgggacaaaatctacccagggta Alignment from Spaln_aa2Genome GTTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA ttgattcagccaaatacaacggcgtgaagaatgattcttctctctgttagGTTGGAGTTATAAGGTATCAGTGACG---TCAGGCGCTAAG---------------------GTTGCACTGTATGGGTGCAATGGAAACTCAAAACAATATGAGGTCTTCAAgtaagtttttaggtgcatatgtgctcatgggacaaaatctacccagggta Alignment from Spaln_nt2Genome GTTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA ttgattcagccaaatacaacggcgtgaagaatgattcttctctctgttagGTTGGAGTTATAAGGTATCAGTGAC---GTCAGGCGCTAA---------------------GGTTGCACTGTATGGGTGCAATGGAAACTCAAAACAATATGAGGTCTTCAAgtaagtttttaggtgcatatgtgctcatgggacaaaatctacccagggta Alignment from Pairagon GTTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA ttgattcagccaaatacaacggcgtgaagaatgattcttctctctgttagGTTGGAGTTATAAGGTATCAGTGAC---GTCAGGCGCTAA---------------------GGTTGCACTGTATGGGTGCAATGGAAACTCAAAACAATATGAGGTCTTCAAgtaagtttttaggtgcatatgtgctcatgggacaaaatctacccagggta Alignment from Exonerate_protein2genome CACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA ttgattcagccaaatacaacggcgtgaagaatgattcttctctctgttagGTTGGAGTTATAAGGTATCAGTGACGTCAGGCGCTAAGGTTGCACTGTATGGGTGCAATGGAAACTCAAAACAATATGAGGTCTTCAAgtaagtttttaggtgcatatgtgctcatgggacaaaatctacccagggta Alignment from Exonerate_coding2genome ttgattcagccaaatacaacggcgtgaagaatgattcttctctctgttaggttggagttataaggtatcagtgacgtcaggcgctaaggttgcactgtatgggtgcaatggaaactcaaaacaatatgaggtcttcaagtaagtttttaggtgcatatgtgctcatgggacaaaatctacccagggta Alignment from GeneWise GTTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA ttgattcagccaaatacaacggcgtgaagaatgattcttctctctgttagGTTGGAGTTATAAGGTATCAGTGACG---TCAGGCGCTAAG---------------------GTTGCACTGTATGGGTGCAATGGAAACTCAAAACAATATGAGGTCTTCAAgtaagtttttaggtgcatatgtgctcatgggacaaaatctacccagggta #### Pnliprp2_ID12789_11 --> 1 - 2 Original Alignment aGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAga agcgtcagagttactagctgctaagttgtctcctccctcttgtcacccagaGGGTCTCTACAACCAGAAGCAAGACATATATGCGATATTGAGGTGGATGTTAACATG---GAAGTGCCAAAGGTGAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCAACCATGGGAGCTGCCCAGATTACGGAGCAACATGGAAAAGAGGGGAAAgagtaagtataccccaccaatgaaataagacagatttttacaggctcttcat Alignment from CESAR aGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAga agcgtcagagttactagctgctaagttgtctcctccctcttgtcacccagaGGGTCTCTACAACCAGAAGCAAGACATATATGCGATATTGAGGTGGATGTTAACATG---GAAGTGCCAAAGGTGAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCAACCATGGGAGCTGCCCAGATTACGGAGCAACATGGAAAAGAGGGGAAAgagtaagtataccccaccaatgaaataagacagatttttacaggctcttcat Alignment from Spaln_aa2Genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA agcgtcagagttactagctgctaagttgtctcctccctcttgtcacccagAGGGTCTCTACAACCAGAAGCAAGACATATATGCGATATTGAGGTGGATGTTAACATG---GAAGTGCCAAAGGTGAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCAACCATGGGAGCTGCCCAGATTACGGAGCAACATGGAAAAGAGGGGAAAGAgtaagtataccccaccaatgaaataagacagatttttacaggctcttcat Alignment from Spaln_nt2Genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA agcgtcagagttactagctgctaagttgtctcctccctcttgtcacccagAGGGTCTCTACAACCAGAAGCAAGACATATATGCGATATTGAGGTGGATGTTAACAT---GGAAGTGCCAAAGGTGAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCAACCATGGGAGCTGCCCAGATTACGGAGCAACATGGAAAAGAGGGGAAAGAgtaagtataccccaccaatgaaataagacagatttttacaggctcttcat Alignment from Pairagon AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA agcgtcagagttactagctgctaagttgtctcctccctcttgtcacccagAGGGTCTCTACAACCAGAAGCAAGACATATATGCGATATTGAGGTGGATGTTAACAT---GGAAGTGCCAAAGGTGAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCAACCATGGGAGCTGCCCAGATTACGGAGCAACATGGAAAAGAGGGGAAAGAgtaagtataccccaccaatgaaataagacagatttttacaggctcttcat Alignment from Exonerate_protein2genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA agcgtcagagttactagctgctaagttgtctcctccctcttgtcacccagAGGGTCTCTACAACCAGAAGCAAGACATATATGCGATATTGAGGTGGATGTTAACATG---GAAGTGCCAAAGGTGAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCAACCATGGGAGCTGCCCAGATTACGGAGCAACATGGAAAAGAGGGGAAAGAgtaagtataccccaccaatgaaataagacagatttttacaggctcttcat Alignment from Exonerate_coding2genome agcgtcagagttactagctgctaagttgtctcctccctcttgtcacccagagggtctctacaaccagaagcaagacatatatgcgatattgaggtggatgttaacatggaagtgccaaaggtgaagttcctttggaacaacaaggtcattaatctcttccagccaaccatgggagctgcccagattacggagcaacatggaaaagaggggaaagagtaagtataccccaccaatgaaataagacagatttttacaggctcttcat Alignment from GeneWise AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGAG agcgtcagagttactagctgctaagttgtctcctccctcttgtcacccagAGGGTCTCTACAACCAGAAGCAAGACATATATGCGATATTGAGGTGGATGTTAACATG---GAAGTGCCAAAGGTGAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCAACCATGGGAGCTGCCCAGATTACGGAGCAACATGGAAAAGAGGGGAAAGAGtaagtataccccaccaatgaaataagacagatttttacaggctcttcat #### Pola2_ID1325_15 --> 0 - 2 Original Alignment CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTag agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTAATG---TACTCAACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTaggtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from CESAR CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTag agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTAATGTAC---TCAACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTaggtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from Spaln_aa2Genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTAATGTACTCA---ACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from Spaln_nt2Genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTAATGT---ACTCAACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from Pairagon CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGT------------------------------TTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTAATGTACTCAACTACTGCAGATTTACTCTATCATGTT---------------------------------GGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from Exonerate_protein2genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTAATGTACTCA---ACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from Exonerate_coding2genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTAATGTACTCA---ACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag Alignment from GeneWise CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agctcactgtaggttttattgcaaggagctgactgacaatgcctttccagCGAGTGCAGTTTGTATCAGAGCCCTGCAGCCTACAGATAAATGGAGTAATGTACTCA---ACTACTGCAGATTTACTCTATCATGTTGGGGCTGAGGAACTGTTTAGgtaagtccatttgacccaataaatggtgttacttaacatagttcttgaag #### Pola2_ID1328_13 --> 0 - 2 Original Alignment AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAag aacacacagtttgagttcatgctcgggttgtgatttttgcatgttcacagAACTCTAAGTCAACAAGCCCATTTGAGGATGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGaggtatcattcccagctgctatacaaaactgattcctaaaggtactgaagac Alignment from CESAR AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAag aacacacagtttgagttcatgctcgggttgtgatttttgcatgttcacagAACTCTAAGTCAACAAGCCCATTTGAGGATGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGaggtatcattcccagctgctatacaaaactgattcctaaaggtactgaagac Alignment from Spaln_aa2Genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgagttcatgctcgggttgtgatttttgcatgttcacagAACTCTAAGTCAACAAGCCCATTTGAGGATGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtatcattcccagctgctatacaaaactgattcctaaaggtactgaagac Alignment from Spaln_nt2Genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgagttcatgctcgggttgtgatttttgcatgttcacagAACTCTAAGTCAACAAGCCCATTTGAGGATGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtatcattcccagctgctatacaaaactgattcctaaaggtactgaagac Alignment from Pairagon AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgagttcatgctcgggttgtgatttttgcatgttcacagAACTCTAAGTCAACAAGCCCATTTGAGGATGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtatcattcccagctgctatacaaaactgattcctaaaggtactgaagac Alignment from Exonerate_protein2genome GGATGCTAAACATGAACAGGTGGAGAACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgagttcatgctcgGGTTGTGATTTTTGCATGTTCACAGAACTCTAAGTCAACAAGCCCATTTGAGGATGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtatcattcccagctgctatacaaaactgattcctaaaggtactgaagac Alignment from Exonerate_coding2genome GGATGCTAAACATGAACAGGTGGAGAACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgagttcatgctcgGGTTGTGATTTTTGCATGTTCACAGAACTCTAAGTCAACAAGCCCATTTGAGGATGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtatcattcccagctgctatacaaaactgattcctaaaggtactgaagac Alignment from GeneWise AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgagttcatgctcgggttgtgatttttgcatgttcacagAACTCTAAGTCAACAAGCCCATTTGAGGATGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtatcattcccagctgctatacaaaactgattcctaaaggtactgaagac #### Pola2_ID1330_11 --> 2 - 0 Original Alignment ctTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG--- cttactttggctacacttactgctggctctcccccaccccctctgtacagccTCTGAACAGAACATGCTAGTGGTTGCTTGTGGCCCCTATACCACCTCTGATAGTATCACATATGGTCGACTGCCTGACCTTATCGCCATCATCAACCAAGACCAGGCAGATGTTTGCATTCTAGTGgtaagattactgtgagattagagtgtatcagattcagccatataacacca Alignment from CESAR ctTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG--- cttactttggctacacttactgctggctctcccccaccccctctgtacagccTCTGAACAGAACATGCTAGTGGTTGCTTGTGGCCCCTATACCACCTCTGATAGTATCACATATGGTCGACTGCCTGACCTTATCGCCATCATCAACCAAGACCAGGCAGATGTTTGCATTCTAGTGgtaagattactgtgagattagagtgtatcagattcagccatataacacca Alignment from Spaln_aa2Genome CTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG cttactttggctacacttactgctggctctcccccaccccctctgtacagCCTCTGAACAGAACATGCTAGTGGTTGCTTGTGGCCCCTATACCACCTCTGATAGTATCACATATGGTCGACTGCCTGACCTTATCGCCATCATCAACCAAGACCAGGCAGATGTTTGCATTCTAgtggtaagattactgtgagattagagtgtatcagattcagccatataacacca Alignment from Spaln_nt2Genome CTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCT---G cttactttggctacacttactgctggctctcccccaccccctctgtacagCCTCTGAACAGAACATGCTAGTGGTTGCTTGTGGCCCCTATACCACCTCTGATAGTATCACATATGGTCGACTGCCTGACCTTATCGCCATCATCAACCAAGACCAGGCAGATGTTTGCATTCTAGTGgtaagattactgtgagattagagtgtatcagattcagccatataacacca Alignment from Pairagon CTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG cttactttggctacacttactgctggctctcccccaccccctctgtacagCCTCTGAACAGAACATGCTAGTGGTTGCTTGTGGCCCCTATACCACCTCTGATAGTATCACATATGGTCGACTGCCTGACCTTATCGCCATCATCAACCAAGACCAGGCAGATGTTTGCATTCTAgtggtaagattactgtgagattagagtgtatcagattcagccatataacacca Alignment from Exonerate_protein2genome GGGAGCTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTGTTCGGACCTTTCCT cttactttggctacacttactgctggctctcccccaccccctctgTACAGCCTCTGAACAGAACATGCTAGTGGTTGCTTGTGGCCCCTATACCACCTCTGATAGTATCACATATGGTCGACTGCCTGACCTTATCGCCATCATCAACCAAGACCAGGCAGATGTTTGCATTCTAGTGGTAAGATTACTgtgagattagagtgtatcagattcagccatataacacca Alignment from Exonerate_coding2genome GGGAGCTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTGTTCGGACCTTTCCT cttactttggctacacttactgctggctctcccccaccccctctgTACAGCCTCTGAACAGAACATGCTAGTGGTTGCTTGTGGCCCCTATACCACCTCTGATAGTATCACATATGGTCGACTGCCTGACCTTATCGCCATCATCAACCAAGACCAGGCAGATGTTTGCATTCTAGTGGTAAGATTACTgtgagattagagtgtatcagattcagccatataacacca Alignment from GeneWise CTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG cttactttggctacacttactgctggctctcccccaccccctctgtacagCCTCTGAACAGAACATGCTAGTGGTTGCTTGTGGCCCCTATACCACCTCTGATAGTATCACATATGGTCGACTGCCTGACCTTATCGCCATCATCAACCAAGACCAGGCAGATGTTTGCATTCTAgtggtaagattactgtgagattagagtgtatcagattcagccatataacacca #### Pola2_ID1337_4 --> 1 - 0 Original Alignment aATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG taaccattttgtttaatcttatcctgcaagtatccttatttcttctttagaGTTGAGGCAGAAGGAGAAGAAGAGAATTTTTCAAGTTCTTACACCACACCTTCTAAGgtaagtacattgcatgtgtcaagtgataaccacactccacaccctctgat Alignment from CESAR aATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG tatcaattttgtttaatcttatcctgcaagtatccttatttcttctttagaGTTGAGGCAGAAGGAGAAGAAGAGAATTTTTCAAGTTCTTACACCACACCTTCTAAGgtaagtacattgcatgtgtcaagtgataaccacactccacaccctctgat Alignment from Spaln_aa2Genome AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG taaccattttgtttaatcttatcctgcaagtatccttatttcttctttagAGTTGAGGCAGAAGGAGAAGAAGAGAATTTTTCAAGTTCTTACACCACACCTTCTAAGgtaagtacattgcatgtgtcaagtgataaccacactccacaccctctgat Alignment from Spaln_nt2Genome AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG taaccattttgtttaatcttatcctgcaagtatccttatttcttctttagAGTTGAGGCAGAAGGAGAAGAAGAGAATTTTTCAAGTTCTTACACCACACCTTCTAAGgtaagtacattgcatgtgtcaagtgataaccacactccacaccctctgat Alignment from Pairagon AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG taaccattttgtttaatcttatcctgcaagtatccttatttcttctttagAGTTGAGGCAGAAGGAGAAGAAGAGAATTTTTCAAGTTCTTACACCACACCTTCTAAGgtaagtacattgcatgtgtcaagtgataaccacactccacaccctctgat Alignment from Exonerate_protein2genome AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG taaccattttgtttaatcttatcctgcaagtatccttatttcttctttagAGTTGAGGCAGAAGGAGAAGAAGAGAATTTTTCAAGTTCTTACACCACACCTTCTAAGgtaagtacattgcatgtgtcaagtgataaccacactccacaccctctgat Alignment from Exonerate_coding2genome taaccattttgtttaatcttatcctgcaagtatccttatttcttctttagagttgaggcagaaggagaagaagagaatttttcaagttcttacaccacaccttctaaggtaagtacattgcatgtgtcaagtgataaccacactccacaccctctgat Alignment from GeneWise AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG taaccattttgtttaatcttatcctgcaagtatccttatttcttctttagAGTTGAGGCAGAAGGAGAAGAAGAGAATTTTTCAAGTTCTTACACCACACCTTCTAAGgtaagtacattgcatgtgtcaagtgataaccacactccacaccctctgat #### Pold4_ID437_2 --> 2 - 1 Original Alignment ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg taggcagataagaagattagacagttcatttctctcttcctgatccctagggGAAGACACACAGTCCCTCAGCCAGGAGGCGACTGCATTGGAGTTTCTACGGCAATCTGACTTGACATGGCAATATGGGCCTTGTACAggtgaggaacccggcttcccggcttctgcatagcaaaaggcaactaccgtc Alignment from CESAR ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg taggcagataagaagattagacagttcatttctctcttcctgatccctagggGAAGACACACAGTCCCTCAGCCAGGAGGCGACTGCATTGGAGTTTCTACGGCAATCTGACTTGACATGGCAATATGGGCCTTGTACAggtgaggaacccggcttcccggcttctgcatagcaaaaggcaactaccgtc Alignment from Spaln_aa2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG taggcagataagaagattagacagttcatttctctcttcctgatccctagGGGAAGACACACAGTCCCTCAGCCAGGAGGCGACTGCATTGGAGTTTCTACGGCAATCTGACTTGACATGGCAATATGGGCCTTGTACAGgtgaggaacccggcttcccggcttctgcatagcaaaaggcaactaccgtc Alignment from Spaln_nt2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG taggcagataagaagattagacagttcatttctctcttcctgatccctagGGGAAGACACACAGTCCCTCAGCCAGGAGGCGACTGCATTGGAGTTTCTACGGCAATCTGACTTGACATGGCAATATGGGCCTTGTACAGgtgaggaacccggcttcccggcttctgcatagcaaaaggcaactaccgtc Alignment from Pairagon GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG taggcagataagaagattagacagttcatttctctcttcctgatccctagGGGAAGACACACAGTCCCTCAGCCAGGAGGCGACTGCATTGGAGTTTCTACGGCAATCTGACTTGACATGGCAATATGGGCCTTGTACAGgtgaggaacccggcttcccggcttctgcatagcaaaaggcaactaccgtc Alignment from Exonerate_protein2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG taggcagataagaagattagacagttcatttctctcttcctgatccctagGGGAAGACACACAGTCCCTCAGCCAGGAGGCGACTGCATTGGAGTTTCTACGGCAATCTGACTTGACATGGCAATATGGGCCTTGTACAGgtgaggaacccggcttcccggcttctgcatagcaaaaggcaactaccgtc Alignment from Exonerate_coding2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG taggcagataagaagattagacagttcatttctctcttcctgatccctagGGGAAGACACACAGTCCCTCAGCCAGGAGGCGACTGCATTGGAGTTTCTACGGCAATCTGACTTGACATGGCAATATGGGCCTTGTACAGgtgaggaacccggcttcccggcttctgcatagcaaaaggcaactaccgtc Alignment from GeneWise GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG taggcagataagaagattagacagttcatttctctcttcctgatccctagGGGAAGACACACAGTCCCTCAGCCAGGAGGCGACTGCATTGGAGTTTCTACGGCAATCTGACTTGACATGGCAATATGGGCCTTGTACAGgtgaggaacccggcttcccggcttctgcatagcaaaaggcaactaccgtc #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag ggctacaccaccaccccccgattatctcagctcagactttcctctcatagggATCTCGAGATTGCTGCAGTGC---AGCCGTGTGGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCCCACTATTGGTGTacgtacggatgtacaggctgcctatctggaaactcctctggagtgtgttaga Alignment from CESAR gtATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag ggctacaccaccaccccccgattatctcagctcagactttcctctcatagggATCTCGAGATTGCTGCAGTGCAGCCGTGTGGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCCCACTATTGGTGTacgtacggatgtacaggctgcctatctggaaactcctctggagtgtgttaga Alignment from Spaln_aa2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG ggctacaccaccaccccccgattatctcagctcagactttcctctcatagGGATCTCGAGATTGCTGCAGTGCAGCCGTGTGGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCCCACTATTGGTGTACgtacggatgtacaggctgcctatctggaaactcctctggagtgtgttaga Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG ggctacaccaccaccccccgattatctcagctcagactttcctctcatagGGATCTCGAGATTGCTGCAGTGCAGCCGTGTGGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCCCACTATTGGTGTACgtacggatgtacaggctgcctatctggaaactcctctggagtgtgttaga Alignment from Pairagon GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCAC------- ggctacaccaccaccccccgattatctcagctcagactttcctctcatagGGATCTCGAGATTGCTGCAGTGCAGCCGTGTGGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCCCACTATTGGTgtacgtacggatgtacaggctgcctatctggaaactcctctggagtgtgttaga Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG ggctacaccaccaccccccgattatctcagctcagactttcctctcatagGGATCTCGAGATTGCTGCAGTGCAGCCGTGTGGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCCCACTATTGGTGTACgtacggatgtacaggctgcctatctggaaactcctctggagtgtgttaga Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC ggctacaccaccaccccccgattatctcagctcagactttcctctcatagGGATCTCGAGATTGCTGCAGTGCAGCCGTGTGGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCCCACTATTGGTGTACGtacggatgtacaggctgcctatctggaaactcctctggagtgtgttaga Alignment from GeneWise GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGCCTGTGGCATCTCTACCCACTC ggctacaccaccaccccccgattatctcagctcagactttcctctcatagGGATCTCGAGATTGCTGCAGTGCAGCCGTGTGGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCACGCCCTGAAGACCCCCACTATTGGTGTACGTACGGATGTACAGGCTGCCTAtctggaaactcctctggagtgtgttaga #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT------CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA attttggatgctgttgtgtggtgtgacttgttgtgttttgtggttcacagGGGAGTGATTTCCTGCCAGTGCTGTCCAGGGGATCTGATCCTGATCGAGACACAGGATTTAGCCGAGTGAACGAAAGAACATTAAAGCTAAGAgtgagcattggggtaagacaacatatagctgtccctgtctagactaatgt Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCT------GATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA attttggatgctgttgtgtggtgtgacttgttgtgttttgtggttcacagGGGAGTGATTTCCTGCCAGTGCTGTCCAGGGGATCTGATCCTGATCGAGACACAGGATTTAGCCGAGTGAACGAAAGAACATTAAAGCTAAGAgtgagcattggggtaagacaacatatagctgtccctgtctagactaatgt Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCT------GATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA attttggatgctgttgtgtggtgtgacttgttgtgttttgtggttcacagGGGAGTGATTTCCTGCCAGTGCTGTCCAGGGGATCTGATCCTGATCGAGACACAGGATTTAGCCGAGTGAACGAAAGAACATTAAAGCTAAGAgtgagcattggggtaagacaacatatagctgtccctgtctagactaatgt Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCT------CTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA attttggatgctgttgtgtggtgtgacttgttgtgttttgtggttcacagGGGAGTGATTTCCTGCCAGTGCTGTCCAGGGGATCTGATCCTGATCGAGACACAGGATTTAGCCGAGTGAACGAAAGAACATTAAAGCTAAGAgtgagcattggggtaagacaacatatagctgtccctgtctagactaatgt Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCT------CTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA attttggatgctgttgtgtggtgtgacttgttgtgttttgtggttcacagGGGAGTGATTTCCTGCCAGTGCTGTCCAGGGGATCTGATCCTGATCGAGACACAGGATTTAGCCGAGTGAACGAAAGAACATTAAAGCTAAGAgtgagcattggggtaagacaacatatagctgtccctgtctagactaatgt Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCT------GATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA attttggatgctgttgtgtggtgtgacttgttgtgttttgtggttcacagGGGAGTGATTTCCTGCCAGTGCTGTCCAGGGGATCTGATCCTGATCGAGACACAGGATTTAGCCGAGTGAACGAAAGAACATTAAAGCTAAGAgtgagcattggggtaagacaacatatagctgtccctgtctagactaatgt Alignment from Exonerate_coding2genome attttggatgctgttgtgtggtgtgacttgttgtgttttgtggttcacaggggagtgatttcctgccagtgctgtccaggggatctgatcctgatcgagacacaggatttagccgagtgaacgaaagaacattaaagctaagagtgagcattggggtaagacaacatatagctgtccctgtctagactaatgt Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT------CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA attttggatgctgttgtgtggtgtgacttgttgtgttttgtggttcacagGGGAGTGATTTCCTGCCAGTGCTGTCCAGGGGATCTGATCCTGATCGAGACACAGGATTTAGCCGAGTGAACGAAAGAACATTAAAGCTAAGAgtgagcattggggtaagacaacatatagctgtccctgtctagactaatgt #### Ppp1r32_ID2845_6 --> 2 - 0 Original Alignment atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagatCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCTCCTTCACATACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from CESAR atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagatCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCTCCTTCACATACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from Spaln_aa2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCTCCTTCACATACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from Spaln_nt2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCTCCTTCACATACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from Pairagon ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCTCCTTCACATACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from Exonerate_protein2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCTCCTTCACATACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt Alignment from Exonerate_coding2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCTGTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAAC cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCTCCTTCACATACCTTCCCTGGGAAGTCTGTAGGGGGTAATAGTGTAACACTCACAATGCTCCACATCAGGGGATGGGT Alignment from GeneWise ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cccattggtttcacttagctgcctattgtttttaccctggtttctttcagATCTCTTGCTTAAGAAGACAATTGGATCTAAGAAGGAGATTGGGTTCTTAGAAGAGTCCACAAAAAATCCGCTTGTTTTTCAGCCTCCTTCACATACCTTCCCTGGGAAGTCTgtagggggtaatagtgtaacactcacaatgctccacatcaggggatgggt #### Ppp1r32_ID2847_4 --> 0 - 0 Original Alignment GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ctgactcttcttttgaaagacaacactaatttcaccccattgctgcccagGACAGGAAGGTACAGTTTGAA---AAGGATCATGGCCCAGAGACAATAATAGGATTGGAAACCAAG------CCCTTAATACACCAGCAACAAGGGAAAGGCATCACAGAGTGGGAGAACTTGCATTATgtaagacaaatgcccaacagggatctactcctaaggccatgttgtattcc Alignment from CESAR GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ctgactcttcttttgaaagacaacactaatttcaccccattgctgcccagGACAGGAAGGTACAGTTTGAA---AAGGATCATGGCCCAGAGACAATAATAGGATTGGAAACCAAG------CCCTTAATACACCAGCAACAAGGGAAAGGCATCACAGAGTGGGAGAACTTGCATTATgtaagacaaatgcccaacagggatctactcctaaggccatgttgtattcc Alignment from Spaln_aa2Genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ctgactcttcttttgaaagacaacactaatttcaccccattgctgcccagGACAGGAAGGTACAGTTTGAA---AAGGATCATGGCCCAGAGACAATAATAGGATTGGAAACCAAG------CCCTTAATACACCAGCAACAAGGGAAAGGCATCACAGAGTGGGAGAACTTGCATTATgtaagacaaatgcccaacagggatctactcctaaggccatgttgtattcc Alignment from Spaln_nt2Genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ctgactcttcttttgaaagacaacactaatttcaccccattgctgcccagGACAGGAAGGTACAGTTTGAAA---AGGATCATGGCCCAGAGACAATAATAGGATTGGAAACCAAG------CCCTTAATACACCAGCAACAAGGGAAAGGCATCACAGAGTGGGAGAACTTGCATTATgtaagacaaatgcccaacagggatctactcctaaggccatgttgtattcc Alignment from Pairagon GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ctgactcttcttttgaaagacaacactaatttcaccccattgctgcccagGACAGGAAGGTACAGTTTGAAA---AGGATCATGGCCCAGAGACAATAATAGGATTGGAAACCAAG------CCCTTAATACACCAGCAACAAGGGAAAGGCATCACAGAGTGGGAGAACTTGCATTATgtaagacaaatgcccaacagggatctactcctaaggccatgttgtattcc Alignment from Exonerate_protein2genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ctgactcttcttttgaaagacaacactaatttcaccccattgctgcccagGACAGGAAGGTACAGTTTGAA---AAGGATCATGGCCCAGAGACAATAATAGGATTGGAAACCAAG------CCCTTAATACACCAGCAACAAGGGAAAGGCATCACAGAGTGGGAGAACTTGCATTATgtaagacaaatgcccaacagggatctactcctaaggccatgttgtattcc Alignment from Exonerate_coding2genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ctgactcttcttttgaaagacaacactaatttcaccccattgctgcccagGACAGGAAGGTACAGTTTGAA---AAGGATCATGGCCCAGAGACAATAATAGGATTGGAAACCAAG------CCCTTAATACACCAGCAACAAGGGAAAGGCATCACAGAGTGGGAGAACTTGCATTATgtaagacaaatgcccaacagggatctactcctaaggccatgttgtattcc Alignment from GeneWise GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ctgactcttcttttgaaagacaacactaatttcaccccattgctgcccagGACAGGAAGGTACAGTTTGAA---AAGGATCATGGCCCAGAGACAATAATAGGATTGGAAACCAAG------CCCTTAATACACCAGCAACAAGGGAAAGGCATCACAGAGTGGGAGAACTTGCATTATgtaagacaaatgcccaacagggatctactcctaaggccatgttgtattcc #### Ppp1r32_ID2848_3 --> 1 - 0 Original Alignment gCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataacccaatactcgagctctgttgtttctttctcaagcCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGCCAATGTTACTCTCCCCTGGAGGTGCCTGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCAAAAGAAgtgaggtagggcccacagctagatggggggaaataaattttaccatgaca Alignment from CESAR gCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataacccaatactcgagctctgttgtttctttctcaagcCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGCCAATGTTACTCTCCCCTGGAGGTGCCTGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCAAAAGAAgtgaggtagggcccacagctagatggggggaaataaattttaccatgaca Alignment from Spaln_aa2Genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAGGTCAG gaagacattctcataacccaatactcgagctctgttgtttctttctcaagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGCCAATGTTACTCTCCCCTGGAGGTGCCTGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCAAAAGAAGTGAGgtagggcccacagctagatggggggaaataaattttaccatgaca Alignment from Spaln_nt2Genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataacccaatactcgagctctgttgtttctttctcaagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGCCAATGTTACTCTCCCCTGGAGGTGCCTGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCAAAAGAAgtgaggtagggcccacagctagatggggggaaataaattttaccatgaca Alignment from Pairagon GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataacccaatactcgagctctgttgtttctttctcaagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGCCAATGTTACTCTCCCCTGGAGGTGCCTGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCAAAAGAAgtgaggtagggcccacagctagatggggggaaataaattttaccatgaca Alignment from Exonerate_protein2genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAGGTCAG gaagacattctcataacccaatactcgagctctgttgtttctttctcaagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGCCAATGTTACTCTCCCCTGGAGGTGCCTGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCAAAAGAAGTGAGgtagggcccacagctagatggggggaaataaattttaccatgaca Alignment from Exonerate_coding2genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAGGTCAG gaagacattctcataacccaatactcgagctctgttgtttctttctcaagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGCCAATGTTACTCTCCCCTGGAGGTGCCTGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCAAAAGAAGTGAGgtagggcccacagctagatggggggaaataaattttaccatgaca Alignment from GeneWise GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAGGTCAG gaagacattctcataacccaatactcgagctctgttgtttctttctcaagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGCCAATGTTACTCTCCCCTGGAGGTGCCTGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCAAAAGAAGTGAGgtagggcccacagctagatggggggaaataaattttaccatgaca #### Ppp6r3_ID77_16 --> 0 - 2 Original Alignment GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCag ttatgattcttgccatacctccttcttcactttccttggtcacctttcagGGAAATATTGCTTTATTTGAGGCCTGTTGCAAAGAAAGACTACAACTGTTTGAGGATGGAGCTTTTGATGAAGAGGACATTTGG---GAAAAGCATATTGCATTTACCTCAGAATCCCAAAGGAGGGCTgggtatgcttctgtcattggtaatcctgtgggaatccataccccacagccac Alignment from CESAR GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCag ttatgattcttgccatacctccttcttcactttccttggtcacctttcagGGAAATATTGCTTTATTTGAGGCCTGTTGCAAAGAAAGACTACAACTGTTTGAGGATGGAGCTTTTGATGAAGAGGACATTTGG---GAAAAGCATATTGCATTTACCTCAGAATCCCAAAGGAGGGCTgggtatgcttctgtcattggtaatcctgtgggaatccataccccacagccac Alignment from Spaln_aa2Genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG ttatgattcttgccatacctccttcttcactttccttggtcacctttcagGGAAATATTGCTTTATTTGAGGCCTGTTGCAAAGAAAGACTACAACTGTTTGAGGATGGAGCTTTTGATGAAGAGGACATTTGGGAA---AAGCATATTGCATTTACCTCAGAATCCCAAAGGAGGGCTGGgtatgcttctgtcattggtaatcctgtgggaatccataccccacagccac Alignment from Spaln_nt2Genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG ttatgattcttgccatacctccttcttcactttccttggtcacctttcagGGAAATATTGCTTTATTTGAGGCCTGTTGCAAAGAAAGACTACAACTGTTTGAGGATGGAGCTTTTGATGAAGAGGACATTTG---GGAAAAGCATATTGCATTTACCTCAGAATCCCAAAGGAGGGCTGGgtatgcttctgtcattggtaatcctgtgggaatccataccccacagccac Alignment from Pairagon GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG ttatgattcttgccatacctccttcttcactttccttggtcacctttcagGGAAATATTGCTTTATTTGAGGCCTGTTGCAAAGAAAGACTACAACTGTTTGAGGATGGAGCTTTTGATGAAGAGGACATTTG---GGAAAAGCATATTGCATTTACCTCAGAATCCCAAAGGAGGGCTGGgtatgcttctgtcattggtaatcctgtgggaatccataccccacagccac Alignment from Exonerate_protein2genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG ttatgattcttgccatacctccttcttcactttccttggtcacctttcagGGAAATATTGCTTTATTTGAGGCCTGTTGCAAAGAAAGACTACAACTGTTTGAGGATGGAGCTTTTGATGAAGAGGACATTTGG---GAAAAGCATATTGCATTTACCTCAGAATCCCAAAGGAGGGCTGGgtatgcttctgtcattggtaatcctgtgggaatccataccccacagccac Alignment from Exonerate_coding2genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG ttatgattcttgccatacctccttcttcactttccttggtcacctttcagGGAAATATTGCTTTATTTGAGGCCTGTTGCAAAGAAAGACTACAACTGTTTGAGGATGGAGCTTTTGATGAAGAGGACATTTGG---GAAAAGCATATTGCATTTACCTCAGAATCCCAAAGGAGGGCTGGgtatgcttctgtcattggtaatcctgtgggaatccataccccacagccac Alignment from GeneWise GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG ttatgattcttgccatacctccttcttcactttccttggtcacctttcagGGAAATATTGCTTTATTTGAGGCCTGTTGCAAAGAAAGACTACAACTGTTTGAGGATGGAGCTTTTGATGAAGAGGACATTTGGGAA---AAGCATATTGCATTTACCTCAGAATCCCAAAGGAGGGCTGGgtatgcttctgtcattggtaatcctgtgggaatccataccccacagccac #### Ppp6r3_ID78_15 --> 1 - 0 Original Alignment tGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT gcttctgtcacatgaattaaaagcatattgtagtattttattctttatagcGTGTCATTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAGAGCgtaagcagaaagattgtcacccctgctatttttgttagttttttgacctc Alignment from CESAR tGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT gcttctgtcacatgaattaaaagcatattgtagtattttattctttatagcGTGTCATTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAGAGCgtaagcagaaagattgtcacccctgctatttttgttagttttttgacctc Alignment from Spaln_aa2Genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT gcttctgtcacatgaattaaaagcatattgtagtattttattctttatagCGTGTCATTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAGAGCgtaagcagaaagattgtcacccctgctatttttgttagttttttgacctc Alignment from Spaln_nt2Genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT gcttctgtcacatgaattaaaagcatattgtagtattttattctttatagCGTGTCATTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAGAGCgtaagcagaaagattgtcacccctgctatttttgttagttttttgacctc Alignment from Pairagon TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT gcttctgtcacatgaattaaaagcatattgtagtattttattctttatagCGTGTCATTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAGAGCgtaagcagaaagattgtcacccctgctatttttgttagttttttgacctc Alignment from Exonerate_protein2genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT gcttctgtcacatgaattaaaagcatattgtagtattttattctttatagCGTGTCATTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAGAGCgtaagcagaaagattgtcacccctgctatttttgttagttttttgacctc Alignment from Exonerate_coding2genome gcttctgtcacatgaattaaaagcatattgtagtattttattctttatagcgtgtcatttgatcgggtgtcagatgtcaactttactctcaatacaaatgagagcgtaagcagaaagattgtcacccctgctatttttgttagttttttgacctc Alignment from GeneWise TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT gcttctgtcacatgaattaaaagcatattgtagtattttattctttatagCGTGTCATTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAGAGCgtaagcagaaagattgtcacccctgctatttttgttagttttttgacctc #### Ppp6r3_ID87_7 --> 1 - 0 Original Alignment gTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG ttcacatgtctcatacctaggcagtcagcagtctaaaattctgtttgtaggTTCGAAGGCCATATAGAAATCTGCCCCCCTGATATGAGTCACTCAGCTTGTTCAGCCAATAAGAGTGTTCTTGATGCCATCCGAGGAAGGCTGGGGTCATTTCATGAGCTCCTACTTGAACCACCCAAGgtgagctgctgcaaacagtctaaaccctatccaacaaatgataggcaaag Alignment from CESAR gTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG ttcacatgtctcatacctaggcagtcagcagtctaaaattctgtttgtaggTTCGAAGGCCATATAGAAATCTGCCCCCCTGATATGAGTCACTCAGCTTGTTCAGCCAATAAGAGTGTTCTTGATGCCATCCGAGGAAGGCTGGGGTCATTTCATGAGCTCCTACTTGAACCACCCAAGgtgagctgctgcaaacagtctaaaccctatccaacaaatgataggcaaag Alignment from Spaln_aa2Genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG ttcacatgtctcatacctaggcagtcagcagtctaaaattctgtttgtagGTTCGAAGGCCATATAGAAATCTGCCCCCCTGATATGAGTCACTCAGCTTGTTCAGCCAATAAGAGTGTTCTTGATGCCATCCGAGGAAGGCTGGGGTCATTTCATGAGCTCCTACTTGAACCACCCAAGgtgagctgctgcaaacagtctaaaccctatccaacaaatgataggcaaag Alignment from Spaln_nt2Genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG ttcacatgtctcatacctaggcagtcagcagtctaaaattctgtttgtagGTTCGAAGGCCATATAGAAATCTGCCCCCCTGATATGAGTCACTCAGCTTGTTCAGCCAATAAGAGTGTTCTTGATGCCATCCGAGGAAGGCTGGGGTCATTTCATGAGCTCCTACTTGAACCACCCAAGgtgagctgctgcaaacagtctaaaccctatccaacaaatgataggcaaag Alignment from Pairagon GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG ttcacatgtctcatacctaggcagtcagcagtctaaaattctgtttgtagGTTCGAAGGCCATATAGAAATCTGCCCCCCTGATATGAGTCACTCAGCTTGTTCAGCCAATAAGAGTGTTCTTGATGCCATCCGAGGAAGGCTGGGGTCATTTCATGAGCTCCTACTTGAACCACCCAAGgtgagctgctgcaaacagtctaaaccctatccaacaaatgataggcaaag Alignment from Exonerate_protein2genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG ttcacatgtctcatacctaggcagtcagcagtctaaaattctgtttgtagGTTCGAAGGCCATATAGAAATCTGCCCCCCTGATATGAGTCACTCAGCTTGTTCAGCCAATAAGAGTGTTCTTGATGCCATCCGAGGAAGGCTGGGGTCATTTCATGAGCTCCTACTTGAACCACCCAAGgtgagctgctgcaaacagtctaaaccctatccaacaaatgataggcaaag Alignment from Exonerate_coding2genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG ttcacatgtctcatacctaggcagtcagcagtctaaaattctgtttgtagGTTCGAAGGCCATATAGAAATCTGCCCCCCTGATATGAGTCACTCAGCTTGTTCAGCCAATAAGAGTGTTCTTGATGCCATCCGAGGAAGGCTGGGGTCATTTCATGAGCTCCTACTTGAACCACCCAAGgtgagctgctgcaaacagtctaaaccctatccaacaaatgataggcaaag Alignment from GeneWise GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG ttcacatgtctcatacctaggcagtcagcagtctaaaattctgtttgtagGTTCGAAGGCCATATAGAAATCTGCCCCCCTGATATGAGTCACTCAGCTTGTTCAGCCAATAAGAGTGTTCTTGATGCCATCCGAGGAAGGCTGGGGTCATTTCATGAGCTCCTACTTGAACCACCCAAGgtgagctgctgcaaacagtctaaaccctatccaacaaatgataggcaaag #### Ppp6r3_ID89_5 --> 0 - 2 Original Alignment CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAaa cagttttatcgtctcttgtaagcaactaggggtatccttcactcccacagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACAGAACCAGATCCACTATTGGCCACCCTAGAGaagtgagtcatttatataattcctcattgattagtgcacagaagatagccca Alignment from CESAR CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAaa cagttttatcgtctcttgtaagcaactaggggtatccttcactcccacagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACAGAACCAGATCCACTATTGGCCACCCTAGAGaagtgagtcatttatataattcctcattgattagtgcacagaagatagccca Alignment from Spaln_aa2Genome CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagttttatcgtctcttgtaagcaactaggggtatccttcactcccacagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACAGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagtcatttatataattcctcattgattagtgcacagaagatagccca Alignment from Spaln_nt2Genome CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagttttatcgtctcttgtaagcaactaggggtatccttcactcccacagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACAGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagtcatttatataattcctcattgattagtgcacagaagatagccca Alignment from Pairagon CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagttttatcgtctcttgtaagcaactaggggtatccttcactcccacagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACAGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagtcatttatataattcctcattgattagtgcacagaagatagccca Alignment from Exonerate_protein2genome CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagttttatcgtctcttgtaagcaactaggggtatccttcactcccacagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACAGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagtcatttatataattcctcattgattagtgcacagaagatagccca Alignment from Exonerate_coding2genome CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagttttatcgtctcttgtaagcaactaggggtatccttcactcccacagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACAGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagtcatttatataattcctcattgattagtgcacagaagatagccca Alignment from GeneWise CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagttttatcgtctcttgtaagcaactaggggtatccttcactcccacagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACAGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagtcatttatataattcctcattgattagtgcacagaagatagccca #### Prdx3_ID13363_4 --> 1 - 0 Original Alignment cACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG tgttgcaatggcctaaggcttgctatgttacttgcttcctatccgtgtagtACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAATTCCATGAGGTGATCTGTCAAGTGGTGACAGTTTCAGTTGACTCACACCTGAGTCACCTC---GGCATCACCGCACCAAGAAAAgtaagcttgctatcacctgtgcttacacccgtctatttcactgatgtgca Alignment from CESAR cACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG tgttgcaatggcctaaggcttgctatgttacttgcttcctatccgtgtagtACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAATTCCATGAGGTGATCTGTCAAGTGGTGACAGTTTCAGTTGACTCACACCTGAGTCACCTCGGC---ATCACCGCACCAAGAAAAgtaagcttgctatcacctgtgcttacacccgtctatttcactgatgtgca Alignment from Spaln_aa2Genome CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG tgttgcaatggcctaaggcttgctatgttacttgcttcctatccgtgtagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAATTCCATGAGGTGATCTGTCAAGTGGTGACAGTTTCAGTTGACTCACACCTGAGTCACCTCGGC---ATCACCGCACCAAGAAAAgtaagcttgctatcacctgtgcttacacccgtctatttcactgatgtgca Alignment from Spaln_nt2Genome CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG tgttgcaatggcctaaggcttgctatgttacttgcttcctatccgtgtagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGC---TGAATTCCATGAGGTGATCTGTCAAGTGGTGACAGTTTCAGTTGACTCACACCTGAGTCACCT---CGGCATCACCGCACCAAGAAAAgtaagcttgctatcacctgtgcttacacccgtctatttcactgatgtgca Alignment from Pairagon CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG tgttgcaatggcctaaggcttgctatgttacttgcttcctatccgtgtagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGC---TGAATTCCATGAGGTGATCTGTCAAGTGGTGACAGTTTCAGTTGACTCACACCTGAGTCACCTCGGC---ATCACCGCACCAAGAAAAgtaagcttgctatcacctgtgcttacacccgtctatttcactgatgtgca Alignment from Exonerate_protein2genome CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG tgttgcaatggcctaaggcttgctatgttacttgcttcctatccgtgtagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAATTCCATGAGGTGATCTGTCAAGTGGTGACAGTTTCAGTTGACTCACACCTGAGTCACCTCGGC---ATCACCGCACCAAGAAAAgtaagcttgctatcacctgtgcttacacccgtctatttcactgatgtgca Alignment from Exonerate_coding2genome tgttgcaatggcctaaggcttgctatgttacttgcttcctatccgtgtagtacatttgtgcgcccaacagaggttgtagcttttagtgacaaagctgaattccatgaggtgatctgtcaagtggtgacagtttcagttgactcacacctgagtcacctcggcatcaccgcaccaagaaaagtaagcttgctatcacctgtgcttacacccgtctatttcactgatgtgca Alignment from GeneWise CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG tgttgcaatggcctaaggcttgctatgttacttgcttcctatccgtgtagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAATTCCATGAGGTGATCTGTCAAGTGGTGACAGTTTCAGTTGACTCACACCTGAGTCACCTCGGC---ATCACCGCACCAAGAAAAgtaagcttgctatcacctgtgcttacacccgtctatttcactgatgtgca #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG tgccacccaaaggagatgtaatacaaagattttttttctcttttcctcagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaccttaagagcttatgcacaacaaaaaaatctacaaacaaggcaaaca Alignment from CESAR GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG tgccacccaaaggagatgtaatacaaagattttttttctcttttcctcagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaccttaagagcttatgcacaacaaaaaaatctacaaacaaggcaaaca Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG tgccacccaaaggagatgtaatacaaagattttttttctcttttcctcagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaccttaagagcttatgcacaacaaaaaaatctacaaacaaggcaaaca Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG tgccacccaaaggagatgtaatacaaagattttttttctcttttcctcagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaccttaagagcttatgcacaacaaaaaaatctacaaacaaggcaaaca Alignment from Pairagon GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG tgccacccaaaggagatgtaatacaaagattttttttctcttttcctcagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaccttaagagcttatgcacaacaaaaaaatctacaaacaaggcaaaca Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG tgccacccaaaggagatgtaatacaaagattttttttctcttttcctcagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaccttaagagcttatgcacaacaaaaaaatctacaaacaaggcaaaca Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGGCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCG tgccacccaaaggagatgtaatacaaagattttttttctcttttcctcagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGGTACCTTAAGAGCTTATGCACAACAAAAAAATCTACAAACAAGGCAAACA Alignment from GeneWise GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG tgccacccaaaggagatgtaatacaaagattttttttctcttttcctcagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaccttaagagcttatgcacaacaaaaaaatctacaaacaaggcaaaca #### Prkg1_ID6489_17 --> 1 - 0 Original Alignment gTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaaggttgcatattactttgggattgcgaattcccaaccctgcagaTGGTTTGAGGGTTTTAATTGGGAAGGCTCCAGGAAAGGTACCCTAACACCTCCTATTATACCAAGTgtgatgtaacttttgttatcatctgtaagaggttacccccatggacaggc Alignment from CESAR gTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaaggttgcatattactttgggattgcgaattcccaaccctgcagaTGGTTTGAGGGTTTTAATTGGGAAGGCTCCAGGAAAGGTACCCTAACACCTCCTATTATACCAAGTgtgatgtaacttttgttatcatctgtaagaggttacccccatggacaggc Alignment from Spaln_aa2Genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaaggttgcatattactttgggattgcgaattcccaaccctgcagATGGTTTGAGGGTTTTAATTGGGAAGGCTCCAGGAAAGGTACCCTAACACCTCCTATTATACCAAGTgtgatgtaacttttgttatcatctgtaagaggttacccccatggacaggc Alignment from Spaln_nt2Genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaaggttgcatattactttgggattgcgaattcccaaccctgcagATGGTTTGAGGGTTTTAATTGGGAAGGCTCCAGGAAAGGTACCCTAACACCTCCTATTATACCAAGTgtgatgtaacttttgttatcatctgtaagaggttacccccatggacaggc Alignment from Pairagon GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaaggttgcatattactttgggattgcgaattcccaaccctgcagATGGTTTGAGGGTTTTAATTGGGAAGGCTCCAGGAAAGGTACCCTAACACCTCCTATTATACCAAGTgtgatgtaacttttgttatcatctgtaagaggttacccccatggacaggc Alignment from Exonerate_protein2genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaaggttgcatattactttgggattgcgaattcccaaccctgcagATGGTTTGAGGGTTTTAATTGGGAAGGCTCCAGGAAAGGTACCCTAACACCTCCTATTATACCAAGTgtgatgtaacttttgttatcatctgtaagaggttacccccatggacaggc Alignment from Exonerate_coding2genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaaggttgcatattactttgggattgcgaattcccaaccctgcagATGGTTTGAGGGTTTTAATTGGGAAGGCTCCAGGAAAGGTACCCTAACACCTCCTATTATACCAAGTgtgatgtaacttttgttatcatctgtaagaggttacccccatggacaggc Alignment from GeneWise GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaaggttgcatattactttgggattgcgaattcccaaccctgcagATGGTTTGAGGGTTTTAATTGGGAAGGCTCCAGGAAAGGTACCCTAACACCTCCTATTATACCAAGTgtgatgtaacttttgttatcatctgtaagaggttacccccatggacaggc #### Prkg1_ID6589_2 --> 1 - 1 Original Alignment gTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAg gatctcaacttttgttccacaagaaggcttcttcaactcttgtctcgtaggTCAAAAGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATGAAGGAAGGGGATGTAGGGTCACTAGTGTATGTTATGGAAggtgagtctcatatagtatttctccagatacatataccttattgtgagctt Alignment from CESAR gTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAg gatctcaacttttgttccacaagaaggcttcttcaactcttgtctcgtaggTCAAAAGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATGAAGGAAGGGGATGTAGGGTCACTAGTGTATGTTATGGAAggtgagtctcatatagtatttctccagatacatataccttattgtgagctt Alignment from Spaln_aa2Genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG gatctcaacttttgttccacaagaaggcttcttcaactcttgtctcgtagGTCAAAAGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATGAAGGAAGGGGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtctcatatagtatttctccagatacatataccttattgtgagctt Alignment from Spaln_nt2Genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG gatctcaacttttgttccacaagaaggcttcttcaactcttgtctcgtagGTCAAAAGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATGAAGGAAGGGGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtctcatatagtatttctccagatacatataccttattgtgagctt Alignment from Pairagon GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG gatctcaacttttgttccacaagaaggcttcttcaactcttgtctcgtagGTCAAAAGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATGAAGGAAGGGGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtctcatatagtatttctccagatacatataccttattgtgagctt Alignment from Exonerate_protein2genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG gatctcaacttttgttccacaagaaggcttcttcaactcttgtctcgtagGTCAAAAGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATGAAGGAAGGGGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtctcatatagtatttctccagatacatataccttattgtgagctt Alignment from Exonerate_coding2genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG gatctcaacttttgttccacaagaaggcttcttcaactcttgtctcgtagGTCAAAAGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATGAAGGAAGGGGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtctcatatagtatttctccagatacatataccttattgtgagctt Alignment from GeneWise GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG gatctcaacttttgttccacaagaaggcttcttcaactcttgtctcgtagGTCAAAAGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATGAAGGAAGGGGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtctcatatagtatttctccagatacatataccttattgtgagctt #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAA---GAGGCTACTGTGTTGACAACAGACACAGGACAAAAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAAGAG---GCTACTGTGTTGACAACAGACACAGGACAAAAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAAGAG---GCTACTGTGTTGACAACAGACACAGGACAAAAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAAG---AGGCTACTGTGTTGACAACAGACACAGGACAAAAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from Pairagon CTTCAAGACAAGGCTACTGTGCTAAC------CACGGAGCGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAAG---AGGCTACTGTGTTGACAACAGACACAGGACAAAAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACC---ACGGAGCGTAAGAAG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagCTTCAAGAGGCTACTGTGTTGACAACAGACACAGGACAAAAGAAAgtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from Exonerate_coding2genome acctaactaatagtgatgccgatttcaggcccggctctctattttggtagcttcaagaggctactgtgttgacaacagacacaggacaaaagaaagtgagtctagccaatgtgaaaaactgcatctttagtgtgaagtatgtaca Alignment from GeneWise AGACAAGG acctaactaatagtgatgccgatttcaggcccggctctctattttggtagcttcaagaggctactgtgttgacaacagacacaggacaaaagaaagtgagtctagccaatgtgaaaaactgcatctttagtgtgaagTATGTACA #### Prpf19_ID3052_11 --> 0 - 0 Original Alignment GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG atccaaaaaattggccttgattactctctgacacactcctcttcccacagAAACTGGTATTTTCTGCATCCCCTGATGCTACAGTCCTGATTTGGTCAGTCCCAAATACATCCTGTGTTCAGGTCGTTCGTGCCCATGAAAGTGCAGTGACAGGGCTCAGCCTCCATGCTCCTGGGGACTACCTACTAAGCTCTTCTGATGACCAGgtgagtaggcagctaaactgaaccaaccttgtacccagctcagttacagg Alignment from CESAR GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG atccaaaaaattggccttgattactctctgacacactcctcttcccacagAAACTGGTATTTTCTGCATCCCCTGATGCTACAGTCCTGATTTGGTCAGTCCCAAATACATCCTGTGTTCAGGTCGTTCGTGCCCATGAAAGTGCAGTGACAGGGCTCAGCCTCCATGCTCCTGGGGACTACCTACTAAGCTCTTCTGATGACCAGgtgagtaggcagctaaactgaaccaaccttgtacccagctcagttacagg Alignment from Spaln_aa2Genome GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG atccaaaaaattggccttgattactctctgacacactcctcttcccacagAAACTGGTATTTTCTGCATCCCCTGATGCTACAGTCCTGATTTGGTCAGTCCCAAATACATCCTGTGTTCAGGTCGTTCGTGCCCATGAAAGTGCAGTGACAGGGCTCAGCCTCCATGCTCCTGGGGACTACCTACTAAGCTCTTCTGATGACCAGgtgagtaggcagctaaactgaaccaaccttgtacccagctcagttacagg Alignment from Spaln_nt2Genome GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG atccaaaaaattggccttgattactctctgacacactcctcttcccacagAAACTGGTATTTTCTGCATCCCCTGATGCTACAGTCCTGATTTGGTCAGTCCCAAATACATCCTGTGTTCAGGTCGTTCGTGCCCATGAAAGTGCAGTGACAGGGCTCAGCCTCCATGCTCCTGGGGACTACCTACTAAGCTCTTCTGATGACCAGgtgagtaggcagctaaactgaaccaaccttgtacccagctcagttacagg Alignment from Pairagon GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG atccaaaaaattggccttgattactctctgacacactcctcttcccacagAAACTGGTATTTTCTGCATCCCCTGATGCTACAGTCCTGATTTGGTCAGTCCCAAATACATCCTGTGTTCAGGTCGTTCGTGCCCATGAAAGTGCAGTGACAGGGCTCAGCCTCCATGCTCCTGGGGACTACCTACTAAGCTCTTCTGATGACCAGgtgagtaggcagctaaactgaaccaaccttgtacccagctcagttacagg Alignment from Exonerate_protein2genome GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG atccaaaaaattggccttgattactctctgacacactcctcttcccacagAAACTGGTATTTTCTGCATCCCCTGATGCTACAGTCCTGATTTGGTCAGTCCCAAATACATCCTGTGTTCAGGTCGTTCGTGCCCATGAAAGTGCAGTGACAGGGCTCAGCCTCCATGCTCCTGGGGACTACCTACTAAGCTCTTCTGATGACCAGgtgagtaggcagctaaactgaaccaaccttgtacccagctcagttacagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG atccaaaaaattggccttgattactctctgacacactcctcttcccacagAAACTGGTATTTTCTGCATCCCCTGATGCTACAGTCCTGATTTGGTCAGTCCCAAATACATCCTGTGTTCAGGTCGTTCGTGCCCATGAAAGTGCAGTGACAGGGCTCAGCCTCCATGCTCCTGGGGACTACCTACTAAGCTCTTCTGATGACCAGgtgagtaggcagctaaactgaaccaaccttgtacccagctcagttacagg #### Psat1_ID3962_7 --> 1 - 2 Original Alignment cATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgt tgctaggatagcttgtgttcattggaagatgctgtggtttctcttttaagtATATATGTTATGGGTATGGTCCTGGAATGGATCAAGAATAATGGTGGGGCTGCTGCAATGGAAAAGCTTAGCTCCATAAAATCCCAAATGATTTATGCAATCATTGATAATTCTCAAGGGTTTTATgtgtaatgtactgcactaaatatatttgctcccaactgaaatgccactgtta Alignment from CESAR cATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgt tgctaggatagcttgtgttcattggaagatgctgtggtttctcttttaagtATATATGTTATGGGTATGGTCCTGGAATGGATCAAGAATAATGGTGGGGCTGCTGCAATGGAAAAGCTTAGCTCCATAAAATCCCAAATGATTTATGCAATCATTGATAATTCTCAAGGGTTTTATgtgtaatgtactgcactaaatatatttgctcccaactgaaatgccactgtta Alignment from Spaln_aa2Genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tgctaggatagcttgtgttcattggaagatgctgtggtttctcttttaagTATATATGTTATGGGTATGGTCCTGGAATGGATCAAGAATAATGGTGGGGCTGCTGCAATGGAAAAGCTTAGCTCCATAAAATCCCAAATGATTTATGCAATCATTGATAATTCTCAAGGGTTTTATGTgtaatgtactgcactaaatatatttgctcccaactgaaatgccactgtta Alignment from Spaln_nt2Genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tgctaggatagcttgtgttcattggaagatgctgtggtttctcttttaagTATATATGTTATGGGTATGGTCCTGGAATGGATCAAGAATAATGGTGGGGCTGCTGCAATGGAAAAGCTTAGCTCCATAAAATCCCAAATGATTTATGCAATCATTGATAATTCTCAAGGGTTTTATGTgtaatgtactgcactaaatatatttgctcccaactgaaatgccactgtta Alignment from Pairagon CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tgctaggatagcttgtgttcattggaagatgctgtggtttctcttttaagTATATATGTTATGGGTATGGTCCTGGAATGGATCAAGAATAATGGTGGGGCTGCTGCAATGGAAAAGCTTAGCTCCATAAAATCCCAAATGATTTATGCAATCATTGATAATTCTCAAGGGTTTTATGTgtaatgtactgcactaaatatatttgctcccaactgaaatgccactgtta Alignment from Exonerate_protein2genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tgctaggatagcttgtgttcattggaagatgctgtggtttctcttttaagTATATATGTTATGGGTATGGTCCTGGAATGGATCAAGAATAATGGTGGGGCTGCTGCAATGGAAAAGCTTAGCTCCATAAAATCCCAAATGATTTATGCAATCATTGATAATTCTCAAGGGTTTTATGTgtaatgtactgcactaaatatatttgctcccaactgaaatgccactgtta Alignment from Exonerate_coding2genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tgctaggatagcttgtgttcattggaagatgctgtggtttctcttttaagTATATATGTTATGGGTATGGTCCTGGAATGGATCAAGAATAATGGTGGGGCTGCTGCAATGGAAAAGCTTAGCTCCATAAAATCCCAAATGATTTATGCAATCATTGATAATTCTCAAGGGTTTTATGTgtaatgtactgcactaaatatatttgctcccaactgaaatgccactgtta Alignment from GeneWise CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tgctaggatagcttgtgttcattggaagatgctgtggtttctcttttaagTATATATGTTATGGGTATGGTCCTGGAATGGATCAAGAATAATGGTGGGGCTGCTGCAATGGAAAAGCTTAGCTCCATAAAATCCCAAATGATTTATGCAATCATTGATAATTCTCAAGGGTTTTATGTgtaatgtactgcactaaatatatttgctcccaactgaaatgccactgtta #### Psat1_ID3966_3 --> 2 - 2 Original Alignment aaATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGct aaaataaataagtccatgcttcttctatcaaaaagaaattattcttgtagaaATGAGCCACCAAGCATCGGACTTTGCTAAGATTATAGGCAATACAGAAAACCTTGTAAGGGAATTGctgtaagattactcctggttcatgctatatgagttgtccttctgcaagtgct Alignment from CESAR aaATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGct aaaataaataagtccatgcttcttctatcaaaaagaaattattcttgtagaaATGAGCCACCAAGCATCGGACTTTGCTAAGATTATAGGCAATACAGAAAACCTTGTAAGGGAATTGctgtaagattactcctggttcatgctatatgagttgtccttctgcaagtgct Alignment from Spaln_aa2Genome AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT aaaataaataagtccatgcttcttctatcaaaaagaaattattcttgtagAAATGAGCCACCAAGCATCGGACTTTGCTAAGATTATAGGCAATACAGAAAACCTTGTAAGGGAATTGCTgtaagattactcctggttcatgctatatgagttgtccttctgcaagtgct Alignment from Spaln_nt2Genome AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT aaaataaataagtccatgcttcttctatcaaaaagaaattattcttgtagAAATGAGCCACCAAGCATCGGACTTTGCTAAGATTATAGGCAATACAGAAAACCTTGTAAGGGAATTGCTgtaagattactcctggttcatgctatatgagttgtccttctgcaagtgct Alignment from Pairagon AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT aaaataaataagtccatgcttcttctatcaaaaagaaattattcttgtagAAATGAGCCACCAAGCATCGGACTTTGCTAAGATTATAGGCAATACAGAAAACCTTGTAAGGGAATTGCTgtaagattactcctggttcatgctatatgagttgtccttctgcaagtgct Alignment from Exonerate_protein2genome AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT aaaataaataagtccatgcttcttctatcaaaaagaaattattcttgtagAAATGAGCCACCAAGCATCGGACTTTGCTAAGATTATAGGCAATACAGAAAACCTTGTAAGGGAATTGCTgtaagattactcctggttcatgctatatgagttgtccttctgcaagtgct Alignment from Exonerate_coding2genome AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT aaaataaataagtccatgcttcttctatcaaaaagaaattattcttgtagAAATGAGCCACCAAGCATCGGACTTTGCTAAGATTATAGGCAATACAGAAAACCTTGTAAGGGAATTGCTgtaagattactcctggttcatgctatatgagttgtccttctgcaagtgct Alignment from GeneWise AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT aaaataaataagtccatgcttcttctatcaaaaagaaattattcttgtagAAATGAGCCACCAAGCATCGGACTTTGCTAAGATTATAGGCAATACAGAAAACCTTGTAAGGGAATTGCTgtaagattactcctggttcatgctatatgagttgtccttctgcaagtgct #### Ptar1_ID5192_2 --> 1 - 1 Original Alignment aGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATg caggcacagctggcggtccacaaactatctttctggccggcattttacagaGATGAGATTGGTCTAATTCCTTGTTCTGAGGCACGATATAACCAGAGCCCTATTGTCCTGGTTAAGAACAAACTTGGGGTAGAGAGCTGGTGTGTTAAGTTCTTACTACCATATGTCCACAACAAGCTATTATTGTACAGGACCAGAGAACAATGGCTAAACAAAAGTagtgagctgtgtgaccctaacatgtggggcatagttgcgggagcatgaggt Alignment from CESAR aGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATg caggcacagctggcggtccacaaactatctttctggccggcattttacagaGATGAGATTGGTCTAATTCCTTGTTCTGAGGCACGATATAACCAGAGCCCTATTGTCCTGGTTAAGAACAAACTTGGGGTAGAGAGCTGGTGTGTTAAGTTCTTACTACCATATGTCCACAACAAGCTATTATTGTACAGGACCAGAGAACAATGGCTAAACAAAAGTagtgagctgtgtgaccctaacatgtggggcatagttgcgggagcatgaggt Alignment from Spaln_aa2Genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG caggcacagctggcggtccacaaactatctttctggccggcattttacagAGATGAGATTGGTCTAATTCCTTGTTCTGAGGCACGATATAACCAGAGCCCTATTGTCCTGGTTAAGAACAAACTTGGGGTAGAGAGCTGGTGTGTTAAGTTCTTACTACCATATGTCCACAACAAGCTATTATTGTACAGGACCAGAGAACAATGGCTAAACAAAAGTAgtgagctgtgtgaccctaacatgtggggcatagttgcgggagcatgaggt Alignment from Spaln_nt2Genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG caggcacagctggcggtccacaaactatctttctggccggcattttacagAGATGAGATTGGTCTAATTCCTTGTTCTGAGGCACGATATAACCAGAGCCCTATTGTCCTGGTTAAGAACAAACTTGGGGTAGAGAGCTGGTGTGTTAAGTTCTTACTACCATATGTCCACAACAAGCTATTATTGTACAGGACCAGAGAACAATGGCTAAACAAAAGTAgtgagctgtgtgaccctaacatgtggggcatagttgcgggagcatgaggt Alignment from Pairagon AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG caggcacagctggcggtccacaaactatctttctggccggcattttacagAGATGAGATTGGTCTAATTCCTTGTTCTGAGGCACGATATAACCAGAGCCCTATTGTCCTGGTTAAGAACAAACTTGGGGTAGAGAGCTGGTGTGTTAAGTTCTTACTACCATATGTCCACAACAAGCTATTATTGTACAGGACCAGAGAACAATGGCTAAACAAAAGTAgtgagctgtgtgaccctaacatgtggggcatagttgcgggagcatgaggt Alignment from Exonerate_protein2genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG caggcacagctggcggtccacaaactatctttctggccggcattttacagAGATGAGATTGGTCTAATTCCTTGTTCTGAGGCACGATATAACCAGAGCCCTATTGTCCTGGTTAAGAACAAACTTGGGGTAGAGAGCTGGTGTGTTAAGTTCTTACTACCATATGTCCACAACAAGCTATTATTGTACAGGACCAGAGAACAATGGCTAAACAAAAGTAgtgagctgtgtgaccctaacatgtggggcatagttgcgggagcatgaggt Alignment from Exonerate_coding2genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG caggcacagctggcggtccacaaactatctttctggccggcattttacagAGATGAGATTGGTCTAATTCCTTGTTCTGAGGCACGATATAACCAGAGCCCTATTGTCCTGGTTAAGAACAAACTTGGGGTAGAGAGCTGGTGTGTTAAGTTCTTACTACCATATGTCCACAACAAGCTATTATTGTACAGGACCAGAGAACAATGGCTAAACAAAAGTAgtgagctgtgtgaccctaacatgtggggcatagttgcgggagcatgaggt Alignment from GeneWise AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG caggcacagctggcggtccacaaactatctttctggccggcattttacagAGATGAGATTGGTCTAATTCCTTGTTCTGAGGCACGATATAACCAGAGCCCTATTGTCCTGGTTAAGAACAAACTTGGGGTAGAGAGCTGGTGTGTTAAGTTCTTACTACCATATGTCCACAACAAGCTATTATTGTACAGGACCAGAGAACAATGGCTAAACAAAAGTAgtgagctgtgtgaccctaacatgtggggcatagttgcgggagcatgaggt #### Pten_ID6749_7 --> 2 - 0 Original Alignment atCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattagcttttctctccctgcattagatCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCATCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTAGAGTTCCCTCAGCCATTACCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagggaattaaaagggttctcagcactacagggaaat Alignment from CESAR atCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattagcttttctctccctgcattagatCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCATCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTAGAGTTCCCTCAGCCATTACCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagggaattaaaagggttctcagcactacagggaaat Alignment from Spaln_aa2Genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattagcttttctctccctgcattagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCATCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTAGAGTTCCCTCAGCCATTACCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagggaattaaaagggttctcagcactacagggaaat Alignment from Spaln_nt2Genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattagcttttctctccctgcattagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCATCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTAGAGTTCCCTCAGCCATTACCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagggaattaaaagggttctcagcactacagggaaat Alignment from Pairagon ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattagcttttctctccctgcattagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCATCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTAGAGTTCCCTCAGCCATTACCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagggaattaaaagggttctcagcactacagggaaat Alignment from Exonerate_protein2genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattagcttttctctccctgcattagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCATCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTAGAGTTCCCTCAGCCATTACCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagggaattaaaagggttctcagcactacagggaaat Alignment from Exonerate_coding2genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattagcttttctctccctgcattagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCATCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTAGAGTTCCCTCAGCCATTACCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagggaattaaaagggttctcagcactacagggaaat Alignment from GeneWise ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattagcttttctctccctgcattagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCATCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTAGAGTTCCCTCAGCCATTACCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagggaattaaaagggttctcagcactacagggaaat #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ccaggctgaaggtatcacaatgctacatctgacaacccctttctctgcagCGGATTTATTATCTATCTTTGGAGTTCTTCATGGGCTGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACCTACCAGgtgaatgaagcagcatttatgtgagcatttgagctttataaatgccaaat Alignment from CESAR AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ccaggctgaaggtatcacaatgctacatctgacaacccctttctctgcagCGGATTTATTATCTATCTTTGGAGTTCTTCATGGGCTGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACCTACCAGgtgaatgaagcagcatttatgtgagcatttgagctttataaatgccactg Alignment from Spaln_aa2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ccaggctgaaggtatcacaatgctacatctgacaacccctttctctgcagCGGATTTATTATCTATCTTTGGAGTTCTTCATGGGCTGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACCTACCAGgtgaatgaagcagcatttatgtgagcatttgagctttataaatgccaaat Alignment from Spaln_nt2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ccaggctgaaggtatcacaatgctacatctgacaacccctttctctgcagCGGATTTATTATCTATCTTTGGAGTTCTTCATGGGCTGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACCTACCAGgtgaatgaagcagcatttatgtgagcatttgagctttataaatgccaaat Alignment from Pairagon AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ccaggctgaaggtatcacaatgctacatctgacaacccctttctctgcagCGGATTTATTATCTATCTTTGGAGTTCTTCATGGGCTGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACCTACCAGgtgaatgaagcagcatttatgtgagcatttgagctttataaatgccaaat Alignment from Exonerate_protein2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ccaggctgaaggtatcacaatgctacatctgacaacccctttctctgcagCGGATTTATTATCTATCTTTGGAGTTCTTCATGGGCTGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACCTACCAGgtgaatgaagcagcatttatgtgagcatttgagctttataaatgccaaat Alignment from Exonerate_coding2genome ccaggctgaaggtatcacaatgctacatctgacaacccctttctctgcagcggatttattatctatctttggagttcttcatgggctggacactacaaaacaccatggtaaatcttgccttagggaatgcctgtgatgaggctacctaccaggtgaatgaagcagcatttatgtgagcatttgagctttataaatgccaaat Alignment from GeneWise AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ccaggctgaaggtatcacaatgctacatctgacaacccctttctctgcagCGGATTTATTATCTATCTTTGGAGTTCTTCATGGGCTGGACACTACAAAACACCATGGTAAATCTTGCCTTAGGGAATGCCTGTGATGAGGCTACCTACCAGgtgaatgaagcagcatttatgtgagcatttgagctttataaatgccaaat #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagacgaatggagggtgactaatgctccatttatttatttattttagGCCTGGGATGTTACAGTAAAGACCTGCATCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGACACCTGCAGATAATTTATGAGATTAATCAATGTTTCTTGAATgtaagaacagaatgatgatgaggaacctgaggagctggagtatgatgtat Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagacgaatggagggtgactaatgctccatttatttatttattttagGCCTGGGATGTTACAGTAAAGACCTGCATCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGACACCTGCAGATAATTTATGAGATTAATCAATGTTTCTTGAATgtaagaacagaatgatgatgaggaacctgaggagctggagtatgatgtat Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagacgaatggagggtgactaatgctccatttatttatttattttagGCCTGGGATGTTACAGTAAAGACCTGCATCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGACACCTGCAGATAATTTATGAGATTAATCAATGTTTCTTGAATgtaagaacagaatgatgatgaggaacctgaggagctggagtatgatgtat Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagacgaatggagggtgactaatgctccatttatttatttattttagGCCTGGGATGTTACAGTAAAGACCTGCATCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGACACCTGCAGATAATTTATGAGATTAATCAATGTTTCTTGAATgtaagaacagaatgatgatgaggaacctgaggagctggagtatgatgtat Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagacgaatggagggtgactaatgctccatttatttatttattttagGCCTGGGATGTTACAGTAAAGACCTGCATCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGACACCTGCAGATAATTTATGAGATTAATCAATGTTTCTTGAATgtaagaacagaatgatgatgaggaacctgaggagctggagtatgatgtat Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagacgaatggagggtgactaatgctccatttatttatttattttagGCCTGGGATGTTACAGTAAAGACCTGCATCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGACACCTGCAGATAATTTATGAGATTAATCAATGTTTCTTGAATgtaagaacagaatgatgatgaggaacctgaggagctggagtatgatgtat Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagacgaatggagggtgactaatgctccatttatttatttattttagGCCTGGGATGTTACAGTAAAGACCTGCATCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGACACCTGCAGATAATTTATGAGATTAATCAATGTTTCTTGAATgtaagaacagaatgatgatgaggaacctgaggagctggagtatgatgtat Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC acaaagacgaatggagggtgactaatgctccatttatttatttattttagGCCTGGGATGTTACAGTAAAGACCTGCATCTACACTAACCACACAGTGCTGCCTGAAGCTCTAGAGCGATGGCCTGTGCATCTCATGGAGTCACTGCTACCCCGACACCTGCAGATAATTTATGAGATTAATCAATGTTTCTTGAATgtaagaacagaatgatgatgaggaacctgaggagctggagtatgatgtat #### Pygm_ID1692_16 --> 0 - 1 Original Alignment GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAg agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGACAGTGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGggtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from CESAR GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAg agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGACAGTGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGggtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from Spaln_aa2Genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGACAGTGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from Spaln_nt2Genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAAT---AGATGTGGTCAATCATGACCCGACAGTGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from Pairagon GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAAT---AGATGTGGTCAATCATGACCCGACAGTGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from Exonerate_protein2genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGACAGTGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from Exonerate_coding2genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGACAGTGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg Alignment from GeneWise GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG agaattaaaccctaagaagtgtcttcattctcttcccttgtggattccagGCAGCACCTGGGTATCACATGGCTGAGATGCTCATTAAAATTATCACTGCAATA---GATGTGGTCAATCATGACCCGACAGTGGGGGATCGTCTCCAAGTGCTTTTTCTGGAGAACTATCAGGTAACGCTTGCTGAGAGGGgtaggccgcaccaatgctgatggactactgctgctggctaagaagctctg #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aactttcctcttccaggtctgacacctgtgtctgtcttctctgccctcagcTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAACGTCAGGATAAAGTCAGTGGATTATATAATgtgagttgttgttcaataacctgggcagggtataactcactggtctacag Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aactttcctcttccaggtctgacacctgtgtctgtcttctctgccctcagcTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAACGTCAGGATAAAGTCAGTGGATTATATAATgtgagttgttgttcaataacctgggcagggtataactcactggtctacag Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aactttcctcttccaggtctgacacctgtgtctgtcttctctgccctcagCTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAACGTCAGGATAAAGTCAGTGGATTATATAATgtgagttgttgttcaataacctgggcagggtataactcactggtctacag Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aactttcctcttccaggtctgacacctgtgtctgtcttctctgccctcagCTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAACGTCAGGATAAAGTCAGTGGATTATATAATgtgagttgttgttcaataacctgggcagggtataactcactggtctacag Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aactttcctcttccaggtctgacacctgtgtctgtcttctctgccctcagCTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAACGTCAGGATAAAGTCAGTGGATTATATAATgtgagttgttgttcaataacctgggcagggtataactcactggtctacag Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aactttcctcttccaggtctgacacctgtgtctgtcttctctgccctcagCTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAACGTCAGGATAAAGTCAGTGGATTATATAATgtgagttgttgttcaataacctgggcagggtataactcactggtctacag Alignment from Exonerate_coding2genome aactttcctcttccaggtctgacacctgtgtctgtcttctctgccctcagctttaaagtgtttgtggatcatgaggagtatattaaacgtcaggataaagtcagtggattatataatgtgagttgttgttcaataacctgggcagggtataactcactggtctacag Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aactttcctcttccaggtctgacacctgtgtctgtcttctctgccctcagCTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAACGTCAGGATAAAGTCAGTGGATTATATAATgtgagttgttgttcaataacctgggcagggtataactcactggtctacag #### Pyroxd2_ID8598_10 --> 0 - 0 Original Alignment ACTGTGGCTAAGGTTCAGGTGAACAGTGAAGGCCGTGCCCAAGGAGTCACACTGCAGGACGGCGAGGAGGTCAGAAGCAGAGTCGTCTTGTCCTGCGCG---TCACCACAGGTCACCTTCTTAGAGCTGACACCACAG ggtagaggtcgcggcctcctcactggtcactgctgttgtgtctttaccagACTGTGGCGAAGGTTCAGGTCAACACTGATGGTCATGCCCAGGGTATCACACGTCAGGACAGCGAAAAGGTAAGGAGTAGAGTTGGTTTATCCTGTGCATCACCACCACAGGTAGCCTTCTTAGAGTTAACATCACAGgtaagtactgtcaagtgagagtaagcacatgtcttactgaggccatgagt Alignment from CESAR ACTGTGGCTAAGGTTCAGGTGAACAGTGAAGGCCGTGCCCAAGGAGTCACACTGCAGGACGGCGAGGAGGTCAGAAGCAGAGTCGTCTTGTCCTGCGCGTCACCA---CAGGTCACCTTCTTAGAGCTGACACCACAG ggtagaggtcgcggcctcctcactggtcactgctgttgtgtctttaccagACTGTGGCGAAGGTTCAGGTCAACACTGATGGTCATGCCCAGGGTATCACACGTCAGGACAGCGAAAAGGTAAGGAGTAGAGTTGGTTTATCCTGTGCATCACCACCACAGGTAGCCTTCTTAGAGTTAACATCACAGgtaagtactgtcaagtgagagtaagcacatgtcttactgaggccatgagt Alignment from Spaln_aa2Genome ACTGTGGCTAAGGTTCAGGTGAACAGTGAAGGCCGTGCCCAAGGAGTCACACTGCAGGACGGCGAGGAGGTCAGAAGCAGAGTCGTCTTGTCCTGCGCGTCA---CCACAGGTCACCTTCTTAGAGCTGACACCACAG ggtagaggtcgcggcctcctcactggtcactgctgttgtgtctttaccagACTGTGGCGAAGGTTCAGGTCAACACTGATGGTCATGCCCAGGGTATCACACGTCAGGACAGCGAAAAGGTAAGGAGTAGAGTTGGTTTATCCTGTGCATCACCACCACAGGTAGCCTTCTTAGAGTTAACATCACAGgtaagtactgtcaagtgagagtaagcacatgtcttactgaggccatgagt Alignment from Spaln_nt2Genome ACTGTGGCTAAGGTTCAGGTGAACAGTGAAGGCCGTGCCCAAGGAGTCACACTGCAGGACGGCGAGGAGGTCAGAAGCAGAGTCGTCTTGTCCTGCGCGT---CACCACAGGTCACCTTCTTAGAGCTGACACCACAG ggtagaggtcgcggcctcctcactggtcactgctgttgtgtctttaccagACTGTGGCGAAGGTTCAGGTCAACACTGATGGTCATGCCCAGGGTATCACACGTCAGGACAGCGAAAAGGTAAGGAGTAGAGTTGGTTTATCCTGTGCATCACCACCACAGGTAGCCTTCTTAGAGTTAACATCACAGgtaagtactgtcaagtgagagtaagcacatgtcttactgaggccatgagt Alignment from Pairagon ACTGTGGCTAAGGTTCAGGTGAACAGTGAAGGCCGTGCCCAAGGAGTCACACTGCAGGACGGCGAGGAGGTCAGAAGCAGAGTCGTCTTGTCCTGCGCGT---CACCACAGGTCACCTTCTTAGAGCTGACACCACAG ggtagaggtcgcggcctcctcactggtcactgctgttgtgtctttaccagACTGTGGCGAAGGTTCAGGTCAACACTGATGGTCATGCCCAGGGTATCACACGTCAGGACAGCGAAAAGGTAAGGAGTAGAGTTGGTTTATCCTGTGCATCACCACCACAGGTAGCCTTCTTAGAGTTAACATCACAGgtaagtactgtcaagtgagagtaagcacatgtcttactgaggccatgagt Alignment from Exonerate_protein2genome ACTGTGGCTAAGGTTCAGGTGAACAGTGAAGGCCGTGCCCAAGGAGTCACACTGCAGGACGGCGAGGAGGTCAGAAGCAGAGTCGTCTTGTCCTGCGCGTCA---CCACAGGTCACCTTCTTAGAGCTGACACCACAG ggtagaggtcgcggcctcctcactggtcactgctgttgtgtctttaccagACTGTGGCGAAGGTTCAGGTCAACACTGATGGTCATGCCCAGGGTATCACACGTCAGGACAGCGAAAAGGTAAGGAGTAGAGTTGGTTTATCCTGTGCATCACCACCACAGGTAGCCTTCTTAGAGTTAACATCACAGgtaagtactgtcaagtgagagtaagcacatgtcttactgaggccatgagt Alignment from Exonerate_coding2genome ggtagaggtcgcggcctcctcactggtcactgctgttgtgtctttaccagactgtggcgaaggttcaggtcaacactgatggtcatgcccagggtatcacacgtcaggacagcgaaaaggtaaggagtagagttggtttatcctgtgcatcaccaccacaggtagccttcttagagttaacatcacaggtaagtactgtcaagtgagagtaagcacatgtcttactgaggccatgagt Alignment from GeneWise ACTGTGGCTAAGGTTCAGGTGAACAGTGAAGGCCGTGCCCAAGGAGTCACACTGCAGGACGGCGAGGAGGTCAGAAGCAGAGTCGTCTTGTCCTGCGCGTCACCA---CAGGTCACCTTCTTAGAGCTGACACCACAG ggtagaggtcgcggcctcctcactggtcactgctgttgtgtctttaccagACTGTGGCGAAGGTTCAGGTCAACACTGATGGTCATGCCCAGGGTATCACACGTCAGGACAGCGAAAAGGTAAGGAGTAGAGTTGGTTTATCCTGTGCATCACCACCACAGGTAGCCTTCTTAGAGTTAACATCACAGgtaagtactgtcaagtgagagtaagcacatgtcttactgaggccatgagt #### Pyroxd2_ID8602_6 --> 0 - 1 Original Alignment GCTTTCCCCAGATACGAGGAGTTCATGAAACGCTTGGTGCTAGCCATTGACCCCCTACTGGATGCAGCTCCAGTGGACACAACAGCCTTTCAGCATGGCTCTCTGTTGCAGAGGCTCAGGGCACTGTCCACCCTGAAGCCCCTGCTGAAAGCAg aatgggctcagatattcctaagttatgagtgctaatcttgtcacacccagGAATTTCCTAGATATGAAGAGTCCAAGAAGCACTTAGTACTAGCCCTTGATCCACTACTTGACACGGTCCCAGTAGACACAACAGCATTTCAGCATAGTTCACTAGTGCAGAGGGTTAGGGCGCTGTCCACTGTAAAGCCCTTGCTGAAAGCAggtgagtttttaaactgaaaaattaagggataataggaatctatcttaaaa Alignment from CESAR GCTTTCCCCAGATACGAGGAGTTCATGAAACGCTTGGTGCTAGCCATTGACCCCCTACTGGATGCAGCTCCAGTGGACACAACAGCCTTTCAGCATGGCTCTCTGTTGCAGAGGCTCAGGGCACTGTCCACCCTGAAGCCCCTGCTGAAAGCAg aatgggctcagatattcctaagttatgagtgctaatcttgtcacacccagGAATTTCCTAGATATGAAGAGTCCAAGAAGCACTTAGTACTAGCCCTTGATCCACTACTTGACACGGTCCCAGTAGACACAACAGCATTTCAGCATAGTTCACTAGTGCAGAGGGTTAGGGCGCTGTCCACTGTAAAGCCCTTGCTGAAAGCAggtgagtttttaaactgaaaaattaagggataataggaatctatcttaaaa Alignment from Spaln_aa2Genome GCTTTCCCCAGATACGAGGAGTTCATGAAACGCTTGGTGCTAGCCATTGACCCCCTACTGGATGCAGCTCCAGTGGACACAACAGCCTTTCAGCATGGCTCTCTGTTGCAGAGGCTCAGGGCACTGTCCACCCTGAAGCCCCTGCTGAAAGCAG aatgggctcagatattcctaagttatgagtgctaatcttgtcacacccagGAATTTCCTAGATATGAAGAGTCCAAGAAGCACTTAGTACTAGCCCTTGATCCACTACTTGACACGGTCCCAGTAGACACAACAGCATTTCAGCATAGTTCACTAGTGCAGAGGGTTAGGGCGCTGTCCACTGTAAAGCCCTTGCTGAAAGCAGgtgagtttttaaactgaaaaattaagggataataggaatctatcttaaaa Alignment from Spaln_nt2Genome GCTTTCCCCAGATACGAGGAGTTCATGAAACGCTTGGTGCTAGCCATTGACCCCCTACTGGATGCAGCTCCAGTGGACACAACAGCCTTTCAGCATGGCTCTCTGTTGCAGAGGCTCAGGGCACTGTCCACCCTGAAGCCCCTGCTGAAAGCAG aatgggctcagatattcctaagttatgagtgctaatcttgtcacacccagGAATTTCCTAGATATGAAGAGTCCAAGAAGCACTTAGTACTAGCCCTTGATCCACTACTTGACACGGTCCCAGTAGACACAACAGCATTTCAGCATAGTTCACTAGTGCAGAGGGTTAGGGCGCTGTCCACTGTAAAGCCCTTGCTGAAAGCAGgtgagtttttaaactgaaaaattaagggataataggaatctatcttaaaa Alignment from Pairagon GCTTTCCCCAGATACGAGGAGTTCATGAAACGCTTGGTGCTAGCCATTGACCCCCTACTGGATGCAGCTCCAGTGGACACAACAGCCTTTCAGCATGGCTCTCTGTTGCAGAGGCTCAGGGCACTGTCCACCCTGAAGCCCCTGCTGAAAGCAG aatgggctcagatattcctaagttatgagtgctaatcttgtcacacccagGAATTTCCTAGATATGAAGAGTCCAAGAAGCACTTAGTACTAGCCCTTGATCCACTACTTGACACGGTCCCAGTAGACACAACAGCATTTCAGCATAGTTCACTAGTGCAGAGGGTTAGGGCGCTGTCCACTGTAAAGCCCTTGCTGAAAGCAGgtgagtttttaaactgaaaaattaagggataataggaatctatcttaaaa Alignment from Exonerate_protein2genome GCTTTCCCCAGATACGAGGAGTTCATGAAACGCTTGGTGCTAGCCATTGACCCCCTACTGGATGCAGCTCCAGTGGACACAACAGCCTTTCAGCATGGCTCTCTGTTGCAGAGGCTCAGGGCACTGTCCACCCTGAAGCCCCTGCTGAAAGCAG aatgggctcagatattcctaagttatgagtgctaatcttgtcacacccagGAATTTCCTAGATATGAAGAGTCCAAGAAGCACTTAGTACTAGCCCTTGATCCACTACTTGACACGGTCCCAGTAGACACAACAGCATTTCAGCATAGTTCACTAGTGCAGAGGGTTAGGGCGCTGTCCACTGTAAAGCCCTTGCTGAAAGCAGgtgagtttttaaactgaaaaattaagggataataggaatctatcttaaaa Alignment from Exonerate_coding2genome GCTTTCCCCAGATACGAGGAGTTCATGAAACGCTTGGTGCTAGCCATTGACCCCCTACTGGATGCAGCTCCAGTGGACACAACAGCCTTTCAGCATGGCTCTCTGTTGCAGAGGCTCAGGGCACTGTCCACCCTGAAGCCCCTGCTGAAAGCAG aatgggctcagatattcctaagttatgagtgctaatcttgtcacacccagGAATTTCCTAGATATGAAGAGTCCAAGAAGCACTTAGTACTAGCCCTTGATCCACTACTTGACACGGTCCCAGTAGACACAACAGCATTTCAGCATAGTTCACTAGTGCAGAGGGTTAGGGCGCTGTCCACTGTAAAGCCCTTGCTGAAAGCAGgtgagtttttaaactgaaaaattaagggataataggaatctatcttaaaa Alignment from GeneWise GCTTTCCCCAGATACGAGGAGTTCATGAAACGCTTGGTGCTAGCCATTGACCCCCTACTGGATGCAGCTCCAGTGGACACAACAGCCTTTCAGCATGGCTCTCTGTTGCAGAGGCTCAGGGCACTGTCCACCCTGAAGCCCCTGCTGAAAGCAG aatgggctcagatattcctaagttatgagtgctaatcttgtcacacccagGAATTTCCTAGATATGAAGAGTCCAAGAAGCACTTAGTACTAGCCCTTGATCCACTACTTGACACGGTCCCAGTAGACACAACAGCATTTCAGCATAGTTCACTAGTGCAGAGGGTTAGGGCGCTGTCCACTGTAAAGCCCTTGCTGAAAGCAGgtgagtttttaaactgaaaaattaagggataataggaatctatcttaaaa #### Pyroxd2_ID8605_3 --> 0 - 1 Original Alignment GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTg atgcacccactgtcctgcgcccattgtccgcacactcttctccccggcagGCAGCAGACCTGCAGAGACTGCAGGTGAACACTGCAGTCTTTGAGAGGTGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCggtgagccccctcaaaagtatggggcataatacaagcatttagcactattt Alignment from CESAR GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTg atgcacccactgtcctgcgcccattgtccgcacactcttctccccggcagGCAGCAGACCTGCAGAGACTGCAGGTGAACACTGCAGTCTTTGAGAGGTGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCggtgagccccctcaaaagtatggggcataatacaagcatttagcactattt Alignment from Spaln_aa2Genome GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTGGG-- atgcacccactgtcctgcgcccattgtccgcacactcttctccccggcagGCAGCAGACCTGCAGAGACTGCAGGTGAACACTGCAGTCTTTGAGAGGTGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCGGTGAgccccctcaaaagtatggggcataatacaagcatttagcactattt Alignment from Spaln_nt2Genome GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTG atgcacccactgtcctgcgcccattgtccgcacactcttctccccggcagGCAGCAGACCTGCAGAGACTGCAGGTGAACACTGCAGTCTTTGAGAGGTGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCGgtgagccccctcaaaagtatggggcataatacaagcatttagcactattt Alignment from Pairagon GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTG atgcacccactgtcctgcgcccattgtccgcacactcttctccccggcagGCAGCAGACCTGCAGAGACTGCAGGTGAACACTGCAGTCTTTGAGAGGTGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCGgtgagccccctcaaaagtatggggcataatacaagcatttagcactattt Alignment from Exonerate_protein2genome GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTG atgcacccactgtcctgcgcccattgtccgcacactcttctccccggcagGCAGCAGACCTGCAGAGACTGCAGGTGAACACTGCAGTCTTTGAGAGGTGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCGgtgagccccctcaaaagtatggggcataatacaagcatttagcactattt Alignment from Exonerate_coding2genome atgcacccactgtcctgcgcccattgtccgcacactcttctccccggcaggcagcagacctgcagagactgcaggtgaacactgcagtctttgagaggtgtcaagtccttgggggtgcagctgtgacagaagagatcattcccggtgagccccctcaaaagtatggggcataatacaagcatttagcactattt Alignment from GeneWise ACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTGGG-------------- atgcacccactgtcctgcgcccattgtccgcacactcttctccccggcaggcagcagACCTGCAGAGACTGCAGGTGAACACTGCAGTCTTTGAGAGGTGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCGGTGAGCCCCCTCAAAAgtatggggcataatacaagcatttagcactattt #### R3hcc1l_ID8552_5 --> 2 - 1 Original Alignment agTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAg gatcttcaatttgcatcgccccccaatccttccatctgacccctggccagaaTTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTGGCCAGAAGACTTGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGTAAAACTGAACATGAAGCAGAGCTCAGGAAACTCCAGGAGGCTCGAggtaagtaattcataatgcacaacctttgaaaatcccattggcctcactat Alignment from CESAR agTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAg gatcttcaatttgcatcgccccccaatccttccatctgacccctggccagaaTTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTGGCCAGAAGACTTGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGTAAAACTGAACATGAAGCAGAGCTCAGGAAACTCCAGGAGGCTCGAggtaagtaattcataatgcacaacctttgaaaatcccattggcctcactat Alignment from Spaln_aa2Genome AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG gatcttcaatttgcatcgccccccaatccttccatctgacccctggccagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTGGCCAGAAGACTTGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGTAAAACTGAACATGAAGCAGAGCTCAGGAAACTCCAGGAGGCTCGAGgtaagtaattcataatgcacaacctttgaaaatcccattggcctcactat Alignment from Spaln_nt2Genome AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG gatcttcaatttgcatcgccccccaatccttccatctgacccctggccagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTGGCCAGAAGACTTGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGTAAAACTGAACATGAAGCAGAGCTCAGGAAACTCCAGGAGGCTCGAGgtaagtaattcataatgcacaacctttgaaaatcccattggcctcactat Alignment from Pairagon AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG gatcttcaatttgcatcgccccccaatccttccatctgacccctggccagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTGGCCAGAAGACTTGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGTAAAACTGAACATGAAGCAGAGCTCAGGAAACTCCAGGAGGCTCGAGgtaagtaattcataatgcacaacctttgaaaatcccattggcctcactat Alignment from Exonerate_protein2genome AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG gatcttcaatttgcatcgccccccaatccttccatctgacccctggccagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTGGCCAGAAGACTTGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGTAAAACTGAACATGAAGCAGAGCTCAGGAAACTCCAGGAGGCTCGAGgtaagtaattcataatgcacaacctttgaaaatcccattggcctcactat Alignment from Exonerate_coding2genome AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG gatcttcaatttgcatcgccccccaatccttccatctgacccctggccagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTGGCCAGAAGACTTGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGTAAAACTGAACATGAAGCAGAGCTCAGGAAACTCCAGGAGGCTCGAGgtaagtaattcataatgcacaacctttgaaaatcccattggcctcactat Alignment from GeneWise AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG gatcttcaatttgcatcgccccccaatccttccatctgacccctggccagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTGGCCAGAAGACTTGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGTAAAACTGAACATGAAGCAGAGCTCAGGAAACTCCAGGAGGCTCGAGgtaagtaattcataatgcacaacctttgaaaatcccattggcctcactat #### Rab11fip2_ID13106_3 --> 2 - 2 Original Alignment gaAGTCTCAAGTCTCCACACAGACGAACACTAAGCTTTGATACTTCTAAATTGAACCAACCTGGCAGCATTGTGGATGAAGGTGAACACTCTTTTGGAAGACAGAGTGACCCATTTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAGAATCCATTTGAAGAAAGCAGTGAGCCATGGGACAGCAGCATGAATTTATTCTCAAAACCAATTGAAGTCAGGAAAGAAAGTAAGAGAGAGAAAAGGGAGAAGGTGAGCCTCTTTGAAAGAGTGACTGGCAAGAGAGATAGCAGGAGACCTGACAAGCTGAACAATGGTGGATCTGATAGCCCATGTGACTTGAAATCACCTAGTGCTTTTAGTGAAAACCGGCAGGACTATTTTGAATATGAGTCAACTAACCCGTTTACAGCAAAATTCAGGGCTTCAACTATAATGCCATCTTCAag catgaagcagcacccactttttatatggatatatatatactctcgcacaggaAGTCTGAAGTCCCCACATGGACGGAGCCTAACCTTTGATACATCCCAATTGAACCAGCCAGGTAGTATTGTAGATGAAGATAAACACTCTTTTGGGAAAAAGAGTGACCCATTG---AATGTAACAGCATCATTGCCTCAGAAATTCGCCACATTGCCAAGAAAGGAGAACCCGTTTGAA---AGTAGTGAGCCATGGGACAGCAGTATGAATTTAGTTTCAAAACCAATAGAAGTTAGAAAGGACAGTAAGAGGGAGGAAAGGGAGAAGGTTAGCCTCTTTAAGAGGGTGACTGGTAAGAGT---AGCAGGAGACCTGACAAGCTGAATAATGGTGGTTCTGATAGTCCATGTGATCTAAAATCCCCTAGTGCCTTTACCGAAAACTGGCAAGACTACTTTGGGTATGAATCAACTAATCCATTTACTGCTAAATTCAGGGCAGCAACAATTATGCCTTCCTTGgggtaaggggaagagattaagtagcctacactctcaatggactagaaaggat Alignment from CESAR gaAGTCTCAAGTCTCCACACAGACGAACACTAAGCTTTGATACTTCTAAATTGAACCAACCTGGCAGCATTGTGGATGAAGGTGAACACTCTTTTGGAAGACAGAGTGACCCATTTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAGAATCCATTTGAAGAAAGCAGTGAGCCATGGGACAGCAGCATGAATTTATTCTCAAAACCAATTGAAGTCAGGAAAGAAAGTAAGAGAGAGAAAAGGGAGAAGGTGAGCCTCTTTGAAAGAGTGACTGGCAAGAGAGATAGCAGGAGACCTGACAAGCTGAACAATGGTGGATCTGATAGCCCATGTGACTTGAAATCACCTAGTGCTTTTAGTGAAAACCGGCAGGACTATTTTGAATATGAGTCAACTAACCCGTTTACAGCAAAATTCAGGGCTTCAACTATAATGCCATCTTCAag catgaagcagcacccactttttatatggatatatatatactctcgcacaggaAGTCTGAAGTCCCCACATGGACGGAGCCTAACCTTTGATACATCCCAATTGAACCAGCCAGGTAGTATTGTAGATGAAGATAAACACTCTTTTGGGAAAAAGAGTGACCCATTG---AATGTAACAGCATCATTGCCTCAGAAATTCGCCACATTGCCAAGAAAGGAGAACCCGTTT---GAAAGTAGTGAGCCATGGGACAGCAGTATGAATTTAGTTTCAAAACCAATAGAAGTTAGAAAGGACAGTAAGAGGGAGGAAAGGGAGAAGGTTAGCCTCTTTAAGAGGGTGACTGGTAAGAGT---AGCAGGAGACCTGACAAGCTGAATAATGGTGGTTCTGATAGTCCATGTGATCTAAAATCCCCTAGTGCCTTTACCGAAAACTGGCAAGACTACTTTGGGTATGAATCAACTAATCCATTTACTGCTAAATTCAGGGCAGCAACAATTATGCCTTCCTTGgggtaaggggaagagattaagtagcctacactctcaatggactagaaaggat Alignment from Spaln_aa2Genome GAAGTCTCAAGTCTCCACACAGACGAACACTAAGCTTTGATACTTCTAAATTGAACCAACCTGGCAGCATTGTGGATGAAGGTGAACACTCTTTTGGAAGACAGAGTGACCCATTTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAGAATCCATTTGAAGAAAGCAGTGAGCCATGGGACAGCAGCATGAATTTATTCTCAAAACCAATTGAAGTCAGGAAAGAAAGTAAGAGAGAGAAAAGGGAGAAGGTGAGCCTCTTTGAAAGAGTGACTGGCAAGAGAGATAGCAGGAGACCTGACAAGCTGAACAATGGTGGATCTGATAGCCCATGTGACTTGAAATCACCTAGTGCTTTTAGTGAAAACCGGCAGGACTATTTTGAATATGAGTCAACTAACCCGTTTACAGCAAAATTCAGGGCTTCAACTATAATGCCATCTTCAAG catgaagcagcacccactttttatatggatatatatatactctcgcacagGAAGTCTGAAGTCCCCACATGGACGGAGCCTAACCTTTGATACATCCCAATTGAACCAGCCAGGTAGTATTGTAGATGAAGATAAACACTCTTTTGGGAAAAAGAGTGACCCATTG---AATGTAACAGCATCATTGCCTCAGAAATTCGCCACATTGCCAAGAAAGGAGAACCCGTTT---GAAAGTAGTGAGCCATGGGACAGCAGTATGAATTTAGTTTCAAAACCAATAGAAGTTAGAAAGGACAGTAAGAGGGAGGAAAGGGAGAAGGTTAGCCTCTTTAAGAGGGTGACTGGTAAG---AGTAGCAGGAGACCTGACAAGCTGAATAATGGTGGTTCTGATAGTCCATGTGATCTAAAATCCCCTAGTGCCTTTACCGAAAACTGGCAAGACTACTTTGGGTATGAATCAACTAATCCATTTACTGCTAAATTCAGGGCAGCAACAATTATGCCTTCCTTGGGgtaaggggaagagattaagtagcctacactctcaatggactagaaaggat Alignment from Spaln_nt2Genome GAAGTCTCAAGTCTCCACACAGACGAACACTAAGCTTTGATACTTCTAAATTGAACCAACCTGGCAGCATTGTGGATGAAGGTGAACACTCTTTTGGAAGACAGAGTGACCCATTTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAGAATCCATTTGAAGAAAGCAGTGAGCCATGGGACAGCAGCATGAATTTATTCTCAAAACCAATTGAAGTCAGGAAAGAAAGTAAGAGAGAGAAAAGGGAGAAGGTGAGCCTCTTTGAAAGAGTGACTGGCAAGAGAGATAGCAGGAGACCTGACAAGCTGAACAATGGTGGATCTGATAGCCCATGTGACTTGAAATCACCTAGTGCTTTTAGTGAAAACCGGCAGGACTATTTTGAATATGAGTCAACTAACCCGTTTACAGCAAAATTCAGGGCTTCAACTATAATGCCATCTTCAAG catgaagcagcacccactttttatatggatatatatatactctcgcacagGAAGTCTGAAGTCCCCACATGGACGGAGCCTAACCTTTGATACATCCCAATTGAACCAGCCAGGTAGTATTGTAGATGAAGATAAACACTCTTTTGGGAAAAAGAGTGACCCATT---GAATGTAACAGCATCATTGCCTCAGAAATTCGCCACATTGCCAAGAAAGGAGAACCCGTTT---GAAAGTAGTGAGCCATGGGACAGCAGTATGAATTTAGTTTCAAAACCAATAGAAGTTAGAAAGGACAGTAAGAGGGAGGAAAGGGAGAAGGTTAGCCTCTTTAAGAGGGTGACTGGTAAGAG---TAGCAGGAGACCTGACAAGCTGAATAATGGTGGTTCTGATAGTCCATGTGATCTAAAATCCCCTAGTGCCTTTACCGAAAACTGGCAAGACTACTTTGGGTATGAATCAACTAATCCATTTACTGCTAAATTCAGGGCAGCAACAATTATGCCTTCCTTGGGgtaaggggaagagattaagtagcctacactctcaatggactagaaaggat Alignment from Pairagon GAAGTCTCAAGTCTCCACACAGACGAACACTAAGCTTTGATACTTCTAAATTGAACCAACCTGGCAGCATTGTGGATGAAGGTGAACACTCTTTTGGAAGACAGAGTGACCCATTTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAGAATCCATTTGAAGAAAGCAGTGAGCCATGGGACAGCAGCATGAATTTATTCTCAAAACCAATTGAAGTCAGGAAAGAAAGTAAGAGAGAGAAAAGGGAGAAGGTGAGCCTCTTTGAAAGAGTGACTGGCAAGAGAGATAGCAGGAGACCTGACAAGCTGAACAATGGTGGATCTGATAGCCCATGTGACTTGAAATCACCTAGTGCTTTTAGTGAAAACCGGCAGGACTATTTTGAATATGAGTCAACTAACCCGTTTACAGCAAAATTCAGGGCTTCAACTATAATGCCATCTTCAAG catgaagcagcacccactttttatatggatatatatatactctcgcacagGAAGTCTGAAGTCCCCACATGGACGGAGCCTAACCTTTGATACATCCCAATTGAACCAGCCAGGTAGTATTGTAGATGAAGATAAACACTCTTTTGGGAAAAAGAGTGACCCATT---GAATGTAACAGCATCATTGCCTCAGAAATTCGCCACATTGCCAAGAAAGGAGAACCCGTTT---GAAAGTAGTGAGCCATGGGACAGCAGTATGAATTTAGTTTCAAAACCAATAGAAGTTAGAAAGGACAGTAAGAGGGAGGAAAGGGAGAAGGTTAGCCTCTTTAAGAGGGTGACTGGTAAGAG---TAGCAGGAGACCTGACAAGCTGAATAATGGTGGTTCTGATAGTCCATGTGATCTAAAATCCCCTAGTGCCTTTACCGAAAACTGGCAAGACTACTTTGGGTATGAATCAACTAATCCATTTACTGCTAAATTCAGGGCAGCAACAATTATGCCTTCCTTGGGgtaaggggaagagattaagtagcctacactctcaatggactagaaaggat Alignment from Exonerate_protein2genome GAAGTCTCAAGTCTCCACACAGACGAACACTAAGCTTTGATACTTCTAAATTGAACCAACCTGGCAGCATTGTGGATGAAGGTGAACACTCTTTTGGAAGACAGAGTGACCCATTTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAGAATCCATTTGAAGAAAGCAGTGAGCCATGGGACAGCAGCATGAATTTATTCTCAAAACCAATTGAAGTCAGGAAAGAAAGTAAGAGAGAGAAAAGGGAGAAGGTGAGCCTCTTTGAAAGAGTGACTGGCAAGAGAGATAGCAGGAGACCTGACAAGCTGAACAATGGTGGATCTGATAGCCCATGTGACTTGAAATCACCTAGTGCTTTTAGTGAAAACCGGCAGGACTATTTTGAATATGAGTCAACTAACCCGTTTACAGCAAAATTCAGGGCTTCAACTATAATGCCATCTTCAAG catgaagcagcacccactttttatatggatatatatatactctcgcacagGAAGTCTGAAGTCCCCACATGGACGGAGCCTAACCTTTGATACATCCCAATTGAACCAGCCAGGTAGTATTGTAGATGAAGATAAACACTCTTTTGGGAAAAAGAGTGACCCATTG---AATGTAACAGCATCATTGCCTCAGAAATTCGCCACATTGCCAAGAAAGGAGAACCCGTTT---GAAAGTAGTGAGCCATGGGACAGCAGTATGAATTTAGTTTCAAAACCAATAGAAGTTAGAAAGGACAGTAAGAGGGAGGAAAGGGAGAAGGTTAGCCTCTTTAAGAGGGTGACTGGTAAG---AGTAGCAGGAGACCTGACAAGCTGAATAATGGTGGTTCTGATAGTCCATGTGATCTAAAATCCCCTAGTGCCTTTACCGAAAACTGGCAAGACTACTTTGGGTATGAATCAACTAATCCATTTACTGCTAAATTCAGGGCAGCAACAATTATGCCTTCCTTGGGgtaaggggaagagattaagtagcctacactctcaatggactagaaaggat Alignment from Exonerate_coding2genome GAAGTCTCAAGTCTCCACACAGACGAACACTAAGCTTTGATACTTCTAAATTGAACCAACCTGGCAGCATTGTGGATGAAGGTGAACACTCTTTTGGAAGACAGAGTGACCCATTTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAGAATCCATTTGAAGAAAGCAGTGAGCCATGGGACAGCAGCATGAATTTATTCTCAAAACCAATTGAAGTCAGGAAAGAAAGTAAGAGAGAGAAAAGGGAGAAGGTGAGCCTCTTTGAAAGAGTGACTGGCAAGAGAGATAGCAGGAGACCTGACAAGCTGAACAATGGTGGATCTGATAGCCCATGTGACTTGAAATCACCTAGTGCTTTTAGTGAAAACCGGCAGGACTATTTTGAATATGAGTCAACTAACCCGTTTACAGCAAAATTCAGGGCTTCAACTATAATGCCATCTTCAAG catgaagcagcacccactttttatatggatatatatatactctcgcacagGAAGTCTGAAGTCCCCACATGGACGGAGCCTAACCTTTGATACATCCCAATTGAACCAGCCAGGTAGTATTGTAGATGAAGATAAACACTCTTTTGGGAAAAAGAGTGACCCATTG---AATGTAACAGCATCATTGCCTCAGAAATTCGCCACATTGCCAAGAAAGGAGAACCCGTTT---GAAAGTAGTGAGCCATGGGACAGCAGTATGAATTTAGTTTCAAAACCAATAGAAGTTAGAAAGGACAGTAAGAGGGAGGAAAGGGAGAAGGTTAGCCTCTTTAAGAGGGTGACTGGTAAG---AGTAGCAGGAGACCTGACAAGCTGAATAATGGTGGTTCTGATAGTCCATGTGATCTAAAATCCCCTAGTGCCTTTACCGAAAACTGGCAAGACTACTTTGGGTATGAATCAACTAATCCATTTACTGCTAAATTCAGGGCAGCAACAATTATGCCTTCCTTGGGgtaaggggaagagattaagtagcctacactctcaatggactagaaaggat Alignment from GeneWise GAAGTCTCAAGTCTCCACACAGACGAACACTAAGCTTTGATACTTCTAAATTGAACCAACCTGGCAGCATTGTGGATGAAGGTGAACACTCTTTTGGAAGACAGAGTGACCCATTTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAGAATCCATTTGAAGAAAGCAGTGAGCCATGGGACAGCAGCATGAATTTATTCTCAAAACCAATTGAAGTCAGGAAAGAAAGTAAGAGAGAGAAAAGGGAGAAGGTGAGCCTCTTTGAAAGAGTGACTGGCAAGAGAGATAGCAGGAGACCTGACAAGCTGAACAATGGTGGATCTGATAGCCCATGTGACTTGAAATCACCTAGTGCTTTTAGTGAAAACCGGCAGGACTATTTTGAATATGAGTCAACTAACCCGTTTACAGCAAAATTCAGGGCTTCAACTATAATGCCATCTTCAAG catgaagcagcacccactttttatatggatatatatatactctcgcacagGAAGTCTGAAGTCCCCACATGGACGGAGCCTAACCTTTGATACATCCCAATTGAACCAGCCAGGTAGTATTGTAGATGAAGATAAACACTCTTTTGGGAAAAAGAGTGACCCATTG---AATGTAACAGCATCATTGCCTCAGAAATTCGCCACATTGCCAAGAAAGGAGAACCCGTTTGAA---AGTAGTGAGCCATGGGACAGCAGTATGAATTTAGTTTCAAAACCAATAGAAGTTAGAAAGGACAGTAAGAGGGAGGAAAGGGAGAAGGTTAGCCTCTTTAAGAGGGTGACTGGTAAG---AGTAGCAGGAGACCTGACAAGCTGAATAATGGTGGTTCTGATAGTCCATGTGATCTAAAATCCCCTAGTGCCTTTACCGAAAACTGGCAAGACTACTTTGGGTATGAATCAACTAATCCATTTACTGCTAAATTCAGGGCAGCAACAATTATGCCTTCCTTGGGgtaaggggaagagattaagtagcctacactctcaatggactagaaaggat #### Rab1b_ID846_2 --> 1 - 0 Original Alignment tGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT atgcatgaaagtatgattttggtagctgcttgttttattcttggtttcagtGATTACTTGTTGAAAATTTCATTGATTGGTGAGTCTGGTGTAGGAAAGTCATGCTTGCTTCTGCAGTATGCTgtaattatctagttaaacttagctattgtacctcatgcacatgaaaatga Alignment from CESAR tGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT atgcatgaaagtatgattttggtagctgcttgttttattcttggtttcagtGATTACTTGTTGAAAATTTCATTGATTGGTGAGTCTGGTGTAGGAAAGTCATGCTTGCTTCTGCAGTATGCTgtaattatctagttaaacttagctattgtacctcatgcacatgaaaatga Alignment from Spaln_aa2Genome TGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT atgcatgaaagtatgattttggtagctgcttgttttattcttggtttcagTGATTACTTGTTGAAAATTTCATTGATTGGTGAGTCTGGTGTAGGAAAGTCATGCTTGCTTCTGCAGTATGCTgtaattatctagttaaacttagctattgtacctcatgcacatgaaaatga Alignment from Spaln_nt2Genome TGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT atgcatgaaagtatgattttggtagctgcttgttttattcttggtttcagTGATTACTTGTTGAAAATTTCATTGATTGGTGAGTCTGGTGTAGGAAAGTCATGCTTGCTTCTGCAGTATGCTgtaattatctagttaaacttagctattgtacctcatgcacatgaaaatga Alignment from Pairagon TTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT atgcatgaaagtatgattttggtagctgcttgttttattcttggtttcagtgattacttgttgaaaatttcaTTGATTGGTGAGTCTGGTGTAGGAAAGTCATGCTTGCTTCTGCAGTATGCTgtaattatctagttaaacttagctattgtacctcatgcacatgaaaatga Alignment from Exonerate_protein2genome GACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT atgcatgaaagtatgattttggtagctgcttgttttattcttggtttcagtGATTACTTGTTGAAAATTTCATTGATTGGTGAGTCTGGTGTAGGAAAGTCATGCTTGCTTCTGCAGTATGCTgtaattatctagttaaacttagctattgtacctcatgcacatgaaaatga Alignment from Exonerate_coding2genome atgcatgaaagtatgattttggtagctgcttgttttattcttggtttcagtgattacttgttgaaaatttcattgattggtgagtctggtgtaggaaagtcatgcttgcttctgcagtatgctgtaattatctagttaaacttagctattgtacctcatgcacatgaaaatga Alignment from GeneWise AACCCCGAATATGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT atgcatgaaagtatgattttggtagctgcttgttttattcttggtttcagt------------GATTACTTGTTGAAAATTTCATTGATTGGTGAGTCTGGTGTAGGAAAGTCATGCTTGCTTCTGCAGTATGCTgtaattatctagttaaacttagctattgtacctcatgcacatgaaaatga #### Rab3il1_ID2647_3 --> 0 - 0 Original Alignment GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACGACTTTGCAGAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacaggactga Alignment from CESAR GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACGACTTTGCAGAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacagctttct Alignment from Spaln_aa2Genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACGACTTTGCAGAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacaggactga Alignment from Spaln_nt2Genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACGACTTTGCAGAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacaggactga Alignment from Pairagon GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACGACTTTGCAGAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacaggactga Alignment from Exonerate_protein2genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACGACTTTGCAGAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAgtcagtctgatcccctgggttaacaactcctggtgcttttacaggactga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTT----------------------------------------------------- gctagtgacgactccaactgagggcccatctcccatctttctctctgcagGAGCTGAAGCTAAAGGATGAGGAGTGTAAACGACTTTGCAGAGTTCGTGTAGAACAAGAGCAGGAGATCGAAGAGCCAACAGCCAGTCTATTCAAAGTCAGTCTGATCCCCTGGGTTAACAACTCCTGGTGCTTTTACAGGACTGA #### Rab3il1_ID2654_9 --> 0 - 1 Original Alignment ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATg agcactaggaggatcctagtatgtcactactcagtgacatttatctccagATCACCACAGTATGCAACTTCTTCACCTATATCCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATggtagatgtccctaactattttcaaatagttacatgtggtaggagtcaggg Alignment from CESAR ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATg agcactaggaggatcctagtatgtcactactcagtgacatttatctccagATCACCACAGTATGCAACTTCTTCACCTATATCCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATggtagatgtccctaactattttcaaatagttacatgtggtaggagtcaggg Alignment from Spaln_aa2Genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcactaggaggatcctagtatgtcactactcagtgacatttatctccagATCACCACAGTATGCAACTTCTTCACCTATATCCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtagatgtccctaactattttcaaatagttacatgtggtaggagtcaggg Alignment from Spaln_nt2Genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcactaggaggatcctagtatgtcactactcagtgacatttatctccagATCACCACAGTATGCAACTTCTTCACCTATATCCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtagatgtccctaactattttcaaatagttacatgtggtaggagtcaggg Alignment from Pairagon ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcactaggaggatcctagtatgtcactactcagtgacatttatctccagATCACCACAGTATGCAACTTCTTCACCTATATCCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtagatgtccctaactattttcaaatagttacatgtggtaggagtcaggg Alignment from Exonerate_protein2genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcactaggaggatcctagtatgtcactactcagtgacatttatctccagATCACCACAGTATGCAACTTCTTCACCTATATCCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtagatgtccctaactattttcaaatagttacatgtggtaggagtcaggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcactaggaggatcctagtatgtcactactcagtgacatttatctccagATCACCACAGTATGCAACTTCTTCACCTATATCCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtagatgtccctaactattttcaaatagttacatgtggtaggagtcaggg #### Rasgrp2_ID1710_9 --> 0 - 0 Original Alignment GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gagtggggtacctgattttgcgctccagggtgtaacgttttcacgcacagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTATACCAACTCTCATTGCAGAGGAAGCCATGCTCCAAGTCATGGgtgtgtcacatatgcacttctactatgacccctcggggatcattttcact Alignment from CESAR GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gagtggggtacctgattttgcgctccagggtgtaacgttttcacgcacagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTATACCAACTCTCATTGCAGAGGAAGCCATGCTCCAAGTCATGGgtgtgtcacatatgcacttctactatgacccctcgggtaccatgtccttg Alignment from Spaln_aa2Genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gagtggggtacctgattttgcgctccagggtgtaacgttttcacgcacagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTATACCAACTCTCATTGCAGAGGAAGCCATGCTCCAAGTCATGGgtgtgtcacatatgcacttctactatgacccctcggggatcattttcact Alignment from Spaln_nt2Genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gagtggggtacctgattttgcgctccagggtgtaacgttttcacgcacagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTATACCAACTCTCATTGCAGAGGAAGCCATGCTCCAAGTCATGGgtgtgtcacatatgcacttctactatgacccctcggggatcattttcact Alignment from Pairagon GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gagtggggtacctgattttgcgctccagggtgtaacgttttcacgcacagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTATACCAACTCTCATTGCAGAGGAAGCCATGCTCCAAGTCATGGgtgtgtcacatatgcacttctactatgacccctcggggatcattttcact Alignment from Exonerate_protein2genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gagtggggtacctgattttgcgctccagggtgtaacgttttcacgcacagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTATACCAACTCTCATTGCAGAGGAAGCCATGCTCCAAGTCATGGgtgtgtcacatatgcacttctactatgacccctcggggatcattttcact Alignment from Exonerate_coding2genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gagtggggtacctgattttgcgctccagggtgtaacgttttcacgcacagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTATACCAACTCTCATTGCAGAGGAAGCCATGCTCCAAGTCATGGgtgtgtcacatatgcacttctactatgacccctcggggatcattttcact Alignment from GeneWise GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG gagtggggtacctgattttgcgctccagggtgtaacgttttcacgcacagGTGTCTCTGGACCAGTATCAGACAGAGGATGAGCTATACCAACTCTCATTGCAGAGGAAGCCATGCTCCAAGTCATGGgtgtgtcacatatgcacttctactatgacccctcggggatcattttcact #### Rasgrp2_ID1714_13 --> 0 - 1 Original Alignment ATCCTGGGCATCTACAAGCAGGGCCTTAAATGT---AGAg aatcattccttaaatctcttcccccaggctgcttttgtccgtttctgcagATTTTGCGAATATATAAACAGGGCCTCAAGTGTAGAGGTggtaagttctgggctccaagatctcttcagaaaatatatcaatactgaggt Alignment from CESAR ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGA---g aatcattccttaaatctcttcccccaggctgcttttgtccgtttctgcagATTTTGCGAATATATAAACAGGGCCTCAAGTGTAGAGGTggtaagttctgggctccaagatctcttcagaaaatatatcaatactgaggt Alignment from Spaln_aa2Genome ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG aatcattccttaaatctcttcccccaggctgcttttgtccgtttctgcagATTTTGCGAATATATAAACAGGGCCTCAAGTGTAGAGgtggtaagttctgggctccaagatctcttcagaaaatatatcaatactgaggt Alignment from Spaln_nt2Genome ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG aatcattccttaaatctcttcccccaggctgcttttgtccgtttctgcagATTTTGCGAATATATAAACAGGGCCTCAAGTGTAGAGgtggtaagttctgggctccaagatctcttcagaaaatatatcaatactgaggt Alignment from Pairagon ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG aatcattccttaaatctcttcccccaggctgcttttgtccgtttctgcagATTTTGCGAATATATAAACAGGGCCTCAAGTGTAGAGgtggtaagttctgggctccaagatctcttcagaaaatatatcaatactgaggt Alignment from Exonerate_protein2genome ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG aatcattccttaaatctcttcccccaggctgcttttgtccgtttctgcagATTTTGCGAATATATAAACAGGGCCTCAAGTGTAGAGgtggtaagttctgggctccaagatctcttcagaaaatatatcaatactgaggt Alignment from Exonerate_coding2genome aatcattccttaaatctcttcccccaggctgcttttgtccgtttctgcagattttgcgaatatataaacagggcctcaagtgtagaggtggtaagttctgggctccaagatctcttcagaaaatatatcaatactgaggt Alignment from GeneWise ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG aatcattccttaaatctcttcccccaggctgcttttgtccgtttctgcagATTTTGCGAATATATAAACAGGGCCTCAAGTGTAGAGgtggtaagttctgggctccaagatctcttcagaaaatatatcaatactgaggt #### Rbm20_ID11376_3 --> 0 - 2 Original Alignment GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAag gctgttgctgctattctaatttactccctactcttaaaatcacttttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAaggtgagtggtttgttggtcatgtcatccttatggggtaccagtactaggac Alignment from CESAR GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAag gctgttgctgctattctaatttactccctactcttaaaatcacttttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAaggtgagtggtttgttggtcatgtcatccttatggggtaccagtactaggac Alignment from Spaln_aa2Genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctgctattctaatttactccctactcttaaaatcacttttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtgagtggtttgttggtcatgtcatccttatggggtaccagtactaggac Alignment from Spaln_nt2Genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctgctattctaatttactccctactcttaaaatcacttttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtgagtggtttgttggtcatgtcatccttatggggtaccagtactaggac Alignment from Pairagon GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctgctattctaatttactccctactcttaaaatcacttttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtgagtggtttgttggtcatgtcatccttatggggtaccagtactaggac Alignment from Exonerate_protein2genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctgctattctaatttactccctactcttaaaatcacttttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtgagtggtttgttggtcatgtcatccttatggggtaccagtactaggac Alignment from Exonerate_coding2genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctgctattctaatttactccctactcttaaaatcacttttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtgagtggtttgttggtcatgtcatccttatggggtaccagtactaggac Alignment from GeneWise GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctgctattctaatttactccctactcttaaaatcacttttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtgagtggtttgttggtcatgtcatccttatggggtaccagtactaggac #### Rbm20_ID11385_11 --> 0 - 1 Original Alignment GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAg taactatcagaataaatccaatggtattgagaagacttgtattcttatagGGACAACACTGCGACAGTGGGAGTAAACCGAAAGGAGATAATTGGTACCCCACAAACATGGAGGATTTAGTTACAGTT------ATAGGTGAGGAGGATTTCATCATGGAACCAGAACTACCAGAGTTGGAAGAAATAGTTCCCATTGACCAAAAAGACAAAACACTT---GAAATATGTACATGTGTCACTGCCACTCTAACTCTAGACCTGGCCAGAGATTTCATCAAGCAGGGAGAAGCAATTGGAAATGGAGATGCAGAACTCAGCCTAAAATTGCCTGGCCAGGTCTCATTTACCTCTGCAAGTTGTCCCAATGATAGAGACTTGGAAATGCCTGGACTAAACCTGGATGCTGAAGGCAAGCCGGCAGAAATTGAGACAGGCCTTTCACTGGAGGTGTCAAACTGCTATGGGGAAGAGGCTAGGGGGGAGGCAGACTCTGATGTGAGTTTGGCCCCTGGTGTCCAGCAAATGTCCTCCCCACCACCAGCAGTTGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGTAAAGCCCGAGGGTCACCAGAGGATGGGTCTCATGAAGCAAGCCCCCTGGAAGGAAAAGCTAGCCCCCCCACTGAGAGTGACCTACAGAGTCAGGCTTGCCGAggtgagtcgtctcaatgtacattccttcatcccctaaataggtcataatcc Alignment from CESAR GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAg taactatcagaataaatccaatggtattgagaagacttgtattcttatagGGACAACACTGCGACAGTGGGAGTAAACCGAAAGGAGATAATTGGTACCCCACAAACATGGAGGATTTAGTTACAGTT------ATAGGTGAGGAGGATTTCATCATGGAACCAGAACTACCAGAGTTGGAAGAAATAGTTCCCATTGACCAAAAAGACAAAACACTT---GAAATATGTACATGTGTCACTGCCACTCTAACTCTAGACCTGGCCAGAGATTTCATCAAGCAGGGAGAAGCAATTGGAAATGGAGATGCAGAACTCAGCCTAAAATTGCCTGGCCAGGTCTCATTTACCTCTGCAAGTTGTCCCAATGATAGAGACTTGGAAATGCCTGGACTAAACCTGGATGCTGAAGGCAAGCCGGCAGAAATTGAGACAGGCCTTTCACTGGAGGTGTCAAACTGCTATGGGGAAGAGGCTAGGGGGGAGGCAGACTCTGATGTGAGTTTGGCCCCTGGTGTCCAGCAAATGTCCTCCCCACCACCAGCAGTTGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGTAAAGCCCGAGGGTCACCAGAGGATGGGTCTCATGAAGCAAGCCCCCTGGAAGGAAAAGCTAGCCCCCCCACTGAGAGTGACCTACAGAGTCAGGCTTGCCGAggtgagtcgtctcaatgtacattccttcatcccctaaataggtcataatcc Alignment from Spaln_aa2Genome GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG taactatcagaataaatccaatggtattgagaagacttgtattcttatagGGACAACACTGCGACAGTGGGAGTAAACCGAAAGGAGATAATTGGTACCCCACAAACATGGAGGATTTAGTTACAGTT------ATAGGTGAGGAGGATTTCATCATGGAACCAGAACTACCAGAGTTGGAAGAAATAGTTCCCATTGACCAAAAAGACAAAACACTT---GAAATATGTACATGTGTCACTGCCACTCTAACTCTAGACCTGGCCAGAGATTTCATCAAGCAGGGAGAAGCAATTGGAAATGGAGATGCAGAACTCAGCCTAAAATTGCCTGGCCAGGTCTCATTTACCTCTGCAAGTTGTCCCAATGATAGAGACTTGGAAATGCCTGGACTAAACCTGGATGCTGAAGGCAAGCCGGCAGAAATTGAGACAGGCCTTTCACTGGAGGTGTCAAACTGCTATGGGGAAGAGGCTAGGGGGGAGGCAGACTCTGATGTGAGTTTGGCCCCTGGTGTCCAGCAAATGTCCTCCCCACCACCAGCAGTTGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGTAAAGCCCGAGGGTCACCAGAGGATGGGTCTCATGAAGCAAGCCCCCTGGAAGGAAAAGCTAGCCCCCCCACTGAGAGTGACCTACAGAGTCAGGCTTGCCGAGgtgagtcgtctcaatgtacattccttcatcccctaaataggtcataatcc Alignment from Spaln_nt2Genome GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG taactatcagaataaatccaatggtattgagaagacttgtattcttatagGGACAACACTGCGACAGTGGGAGTAAACCGAAAGGAGATAATTGGTACCCCACAAACATGGAGGATTTAGTTACAGT------TATAGGTGAGGAGGATTTCATCATGGAACCAGAACTACCAGAGTTGGAAGAAATAGTTCCCATTGACCAAAAAGACAAAACACT---TGAAATATGTACATGTGTCACTGCCACTCTAACTCTAGACCTGGCCAGAGATTTCATCAAGCAGGGAGAAGCAATTGGAAATGGAGATGCAGAACTCAGCCTAAAATTGCCTGGCCAGGTCTCATTTACCTCTGCAAGTTGTCCCAATGATAGAGACTTGGAAATGCCTGGACTAAACCTGGATGCTGAAGGCAAGCCGGCAGAAATTGAGACAGGCCTTTCACTGGAGGTGTCAAACTGCTATGGGGAAGAGGCTAGGGGGGAGGCAGACTCTGATGTGAGTTTGGCCCCTGGTGTCCAGCAAATGTCCTCCCCACCACCAGCAGTTGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGTAAAGCCCGAGGGTCACCAGAGGATGGGTCTCATGAAGCAAGCCCCCTGGAAGGAAAAGCTAGCCCCCCCACTGAGAGTGACCTACAGAGTCAGGCTTGCCGAGgtgagtcgtctcaatgtacattccttcatcccctaaataggtcataatcc Alignment from Pairagon GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG taactatcagaataaatccaatggtattgagaagacttgtattcttatagGGACAACACTGCGACAGTGGGAGTAAACCGAAAGGAGATAATTGGTACCCCACAAACATGGAGGATTTAGTTACAGT------TATAGGTGAGGAGGATTTCATCATGGAACCAGAACTACCAGAGTTGGAAGAAATAGTTCCCATTGACCAAAAAGACAAAACACT---TGAAATATGTACATGTGTCACTGCCACTCTAACTCTAGACCTGGCCAGAGATTTCATCAAGCAGGGAGAAGCAATTGGAAATGGAGATGCAGAACTCAGCCTAAAATTGCCTGGCCAGGTCTCATTTACCTCTGCAAGTTGTCCCAATGATAGAGACTTGGAAATGCCTGGACTAAACCTGGATGCTGAAGGCAAGCCGGCAGAAATTGAGACAGGCCTTTCACTGGAGGTGTCAAACTGCTATGGGGAAGAGGCTAGGGGGGAGGCAGACTCTGATGTGAGTTTGGCCCCTGGTGTCCAGCAAATGTCCTCCCCACCACCAGCAGTTGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGTAAAGCCCGAGGGTCACCAGAGGATGGGTCTCATGAAGCAAGCCCCCTGGAAGGAAAAGCTAGCCCCCCCACTGAGAGTGACCTACAGAGTCAGGCTTGCCGAGgtgagtcgtctcaatgtacattccttcatcccctaaataggtcataatcc Alignment from Exonerate_protein2genome GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG taactatcagaataaatccaatggtattgagaagacttgtattcttatagGGACAACACTGCGACAGTGGGAGTAAACCGAAAGGAGATAATTGGTACCCCACAAACATGGAGGATTTAGTTACAGTT------ATAGGTGAGGAGGATTTCATCATGGAACCAGAACTACCAGAGTTGGAAGAAATAGTTCCCATTGACCAAAAAGACAAAACACTT---GAAATATGTACATGTGTCACTGCCACTCTAACTCTAGACCTGGCCAGAGATTTCATCAAGCAGGGAGAAGCAATTGGAAATGGAGATGCAGAACTCAGCCTAAAATTGCCTGGCCAGGTCTCATTTACCTCTGCAAGTTGTCCCAATGATAGAGACTTGGAAATGCCTGGACTAAACCTGGATGCTGAAGGCAAGCCGGCAGAAATTGAGACAGGCCTTTCACTGGAGGTGTCAAACTGCTATGGGGAAGAGGCTAGGGGGGAGGCAGACTCTGATGTGAGTTTGGCCCCTGGTGTCCAGCAAATGTCCTCCCCACCACCAGCAGTTGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGTAAAGCCCGAGGGTCACCAGAGGATGGGTCTCATGAAGCAAGCCCCCTGGAAGGAAAAGCTAGCCCCCCCACTGAGAGTGACCTACAGAGTCAGGCTTGCCGAGgtgagtcgtctcaatgtacattccttcatcccctaaataggtcataatcc Alignment from Exonerate_coding2genome GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG taactatcagaataaatccaatggtattgagaagacttgtattcttatagGGACAACACTGCGACAGTGGGAGTAAACCGAAAGGAGATAATTGGTACCCCACAAACATGGAGGATTTAGTTACAGTT------ATAGGTGAGGAGGATTTCATCATGGAACCAGAACTACCAGAGTTGGAAGAAATAGTTCCCATTGACCAAAAAGACAAAACACTT---GAAATATGTACATGTGTCACTGCCACTCTAACTCTAGACCTGGCCAGAGATTTCATCAAGCAGGGAGAAGCAATTGGAAATGGAGATGCAGAACTCAGCCTAAAATTGCCTGGCCAGGTCTCATTTACCTCTGCAAGTTGTCCCAATGATAGAGACTTGGAAATGCCTGGACTAAACCTGGATGCTGAAGGCAAGCCGGCAGAAATTGAGACAGGCCTTTCACTGGAGGTGTCAAACTGCTATGGGGAAGAGGCTAGGGGGGAGGCAGACTCTGATGTGAGTTTGGCCCCTGGTGTCCAGCAAATGTCCTCCCCACCACCAGCAGTTGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGTAAAGCCCGAGGGTCACCAGAGGATGGGTCTCATGAAGCAAGCCCCCTGGAAGGAAAAGCTAGCCCCCCCACTGAGAGTGACCTACAGAGTCAGGCTTGCCGAGgtgagtcgtctcaatgtacattccttcatcccctaaataggtcataatcc Alignment from GeneWise GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG taactatcagaataaatccaatggtattgagaagacttgtattcttatagGGACAACACTGCGACAGTGGGAGTAAACCGAAAGGAGATAATTGGTACCCCACAAACATGGAGGATTTAGTTACAGTT------ATAGGTGAGGAGGATTTCATCATGGAACCAGAACTACCAGAGTTGGAAGAAATAGTTCCCATTGACCAAAAAGACAAAACACTT---GAAATATGTACATGTGTCACTGCCACTCTAACTCTAGACCTGGCCAGAGATTTCATCAAGCAGGGAGAAGCAATTGGAAATGGAGATGCAGAACTCAGCCTAAAATTGCCTGGCCAGGTCTCATTTACCTCTGCAAGTTGTCCCAATGATAGAGACTTGGAAATGCCTGGACTAAACCTGGATGCTGAAGGCAAGCCGGCAGAAATTGAGACAGGCCTTTCACTGGAGGTGTCAAACTGCTATGGGGAAGAGGCTAGGGGGGAGGCAGACTCTGATGTGAGTTTGGCCCCTGGTGTCCAGCAAATGTCCTCCCCACCACCAGCAGTTGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGTAAAGCCCGAGGGTCACCAGAGGATGGGTCTCATGAAGCAAGCCCCCTGGAAGGAAAAGCTAGCCCCCCCACTGAGAGTGACCTACAGAGTCAGGCTTGCCGAGgtgagtcgtctcaatgtacattccttcatcccctaaataggtcataatcc #### Rbp4_ID7522_5 --> 2 - 1 Original Alignment acGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATg aacatgtgaaaacatactcatcatcagatgggcacctccttctcttctagctGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACCCCTGTTCCCTTCAG------GATGGTACCTGTGCTGAAAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGATTGAGCCCAGAGACACGCAGACTAGATAGACAGCGGCTGGAGGAGCTGTGTCTAGAAAGACAGTACAGGTGGATTGAACACAATagtacagacaagagatacaaggagcagtaattggcaattcctgttcattaa Alignment from CESAR acGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATg aacatgtgaaaacatactcatcatcagatgggcacctccttctcttctagctGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACCCCTGTTCCCTTCAG------GATGGTACCTGTGCTGAAAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGATTGAGCCCAGAGACACGCAGACTAGATAGACAGCGGCTGGAGGAGCTGTGTCTAGAAAGACAGTACAGGTGGATTGAACACAATagtacagacaagagatacaaggagcagtaattggcaattcctgttcattaa Alignment from Spaln_aa2Genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG aacatgtgaaaacatactcatcatcagatgggcacctccttctcttctagCTGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACCCCTGTTCCCTTCAG------GATGGTACCTGTGCTGAAAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGATTGAGCCCAGAGACACGCAGACTAGATAGACAGCGGCTGGAGGAGCTGTGTCTAGAAAGACAGTACAGGTGGATTGAACACAATAgtacagacaagagatacaaggagcagtaattggcaattcctgttcattaa Alignment from Spaln_nt2Genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG aacatgtgaaaacatactcatcatcagatgggcacctccttctcttctagCTGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACCCCTGTTCCCT------TCAGGATGGTACCTGTGCTGAAAGTTATTCCTTAGTCTTCTCACATG---CCAATGGATTGAGCCCAGAGACACGCAGACTAGATAGACAGCGGCTGGAGGAGCTGTGTCTAGAAAGACAGTACAGGTGGATTGAACACAATAgtacagacaagagatacaaggagcagtaattggcaattcctgttcattaa Alignment from Pairagon ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG aacatgtgaaaacatactcatcatcagatgggcacctccttctcttctagCTGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACCCCTGTTCCCT------TCAGGATGGTACCTGTGCTGAAAGTTATTCCTTAGTCTTCTCACATG---CCAATGGATTGAGCCCAGAGACACGCAGACTAGATAGACAGCGGCTGGAGGAGCTGTGTCTAGAAAGACAGTACAGGTGGATTGAACACAATAgtacagacaagagatacaaggagcagtaattggcaattcctgttcattaa Alignment from Exonerate_protein2genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG aacatgtgaaaacatactcatcatcagatgggcacctccttctcttctagCTGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACCCCTGTTCCCTTCAG------GATGGTACCTGTGCTGAAAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGATTGAGCCCAGAGACACGCAGACTAGATAGACAGCGGCTGGAGGAGCTGTGTCTAGAAAGACAGTACAGGTGGATTGAACACAATAgtacagacaagagatacaaggagcagtaattggcaattcctgttcattaa Alignment from Exonerate_coding2genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAAT aacatgtgaaaacatactcatcatcagatgggcacctccttctcttctagCTGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACCCCTGTTCCCTTCAG------GATGGTACCTGTGCTGAAAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGATTGAGCCCAGAGACACGCAGACTAGATAGACAGCGGCTGGAGGAGCTGTGTCTAGAAAGACAGTACAGGTGGATTGAACACAATagtacagacaagagatacaaggagcagtaattggcaattcctgttcattaa Alignment from GeneWise ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG aacatgtgaaaacatactcatcatcagatgggcacctccttctcttctagCTGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACCCCTGTTCCCTTCAG------GATGGTACCTGTGCTGAAAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGATTGAGCCCAGAGACACGCAGACTAGATAGACAGCGGCTGGAGGAGCTGTGTCTAGAAAGACAGTACAGGTGGATTGAACACAATAgtacagacaagagatacaaggagcagtaattggcaattcctgttcattaa #### Rcl1_ID6219_8 --> 0 - 2 Original Alignment GGTGGATGCGTAGACTCGACCAAC---CAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACac aattgtcccttgtccaccaccagtatcttgacctattcctactactctagGGTGGGTGTGTATACTCCTCTAATCACGAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCTCAAGATGTTTCAAAAGTCTTGCTAGGACCTCCATCACCTTATacgtgagttatgtattggccctccatttttcatagctgcccaggagataatt Alignment from CESAR GGTGGATGCGTAGACTCGACCAAC---CAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACac aattgtcccttgtccaccaccagtatcttgacctattcctactactctagGGTGGGTGTGTATACTCCTCTAATCACGAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCTCAAGATGTTTCAAAAGTCTTGCTAGGACCTCCATCACCTTATacgtgagttatgtattggccctccatttttcatagctgcccaggagataatt Alignment from Spaln_aa2Genome GGTGGATGCGTAGACTCGACCAACCAA---AGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC aattgtcccttgtccaccaccagtatcttgacctattcctactactctagGGTGGGTGTGTATACTCCTCTAATCACGAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCTCAAGATGTTTCAAAAGTCTTGCTAGGACCTCCATCACCTTATACgtgagttatgtattggccctccatttttcatagctgcccaggagataatt Alignment from Spaln_nt2Genome GGTGGATGCGTAGACTCGACCAACCA---AAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC aattgtcccttgtccaccaccagtatcttgacctattcctactactctagGGTGGGTGTGTATACTCCTCTAATCACGAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCTCAAGATGTTTCAAAAGTCTTGCTAGGACCTCCATCACCTTATACgtgagttatgtattggccctccatttttcatagctgcccaggagataatt Alignment from Pairagon GGTGGATGCGTAGACTCGACCAACC---AAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC aattgtcccttgtccaccaccagtatcttgacctattcctactactctagGGTGGGTGTGTATACTCCTCTAATCACGAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCTCAAGATGTTTCAAAAGTCTTGCTAGGACCTCCATCACCTTATACgtgagttatgtattggccctccatttttcatagctgcccaggagataatt Alignment from Exonerate_protein2genome GGTGGATGCGTAGACTCGACCAAC---CAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC aattgtcccttgtccaccaccagtatcttgacctattcctactactctagGGTGGGTGTGTATACTCCTCTAATCACGAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCTCAAGATGTTTCAAAAGTCTTGCTAGGACCTCCATCACCTTATACgtgagttatgtattggccctccatttttcatagctgcccaggagataatt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGTGGATGCGTAGACTCGACCAAC---CAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC aattgtcccttgtccaccaccagtatcttgacctattcctactactctagGGTGGGTGTGTATACTCCTCTAATCACGAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCTCAAGATGTTTCAAAAGTCTTGCTAGGACCTCCATCACCTTATACgtgagttatgtattggccctccatttttcatagctgcccaggagataatt #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg cttcacttctcgcatcttttcattgatactttgttctttgctctctccagGCTACTACCAAATTCAACTCCCGCTGGACCACAGATGAGGAACTTTTAGCAGTTCAAggtgagataaactactgtgggtttcaaagagtcttggaaatgtttgcatca Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg cttcacttctcgcatcttttcattgatactttgttctttgctctctccagGCTACTACCAAATTCAACTCCCGCTGGACCACAGATGAGGAACTTTTAGCAGTTCAAggtgagataaactactgtgggtttcaaagagtcttggaaatgtttgcatca Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcacttctcgcatcttttcattgatactttgttctttgctctctccagGCTACTACCAAATTCAACTCCCGCTGGACCACAGATGAGGAACTTTTAGCAGTTCAAGgtgagataaactactgtgggtttcaaagagtcttggaaatgtttgcatca Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcacttctcgcatcttttcattgatactttgttctttgctctctccagGCTACTACCAAATTCAACTCCCGCTGGACCACAGATGAGGAACTTTTAGCAGTTCAAGgtgagataaactactgtgggtttcaaagagtcttggaaatgtttgcatca Alignment from Pairagon GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcacttctcgcatcttttcattgatactttgttctttgctctctccagGCTACTACCAAATTCAACTCCCGCTGGACCACAGATGAGGAACTTTTAGCAGTTCAAGgtgagataaactactgtgggtttcaaagagtcttggaaatgtttgcatca Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcacttctcgcatcttttcattgatactttgttctttgctctctccagGCTACTACCAAATTCAACTCCCGCTGGACCACAGATGAGGAACTTTTAGCAGTTCAAGgtgagataaactactgtgggtttcaaagagtcttggaaatgtttgcatca Alignment from Exonerate_coding2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcacttctcgcatcttttcattgatactttgttctttgctctctccagGCTACTACCAAATTCAACTCCCGCTGGACCACAGATGAGGAACTTTTAGCAGTTCAAGgtgagataaactactgtgggtttcaaagagtcttggaaatgtttgcatca Alignment from GeneWise GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcacttctcgcatcttttcattgatactttgttctttgctctctccagGCTACTACCAAATTCAACTCCCGCTGGACCACAGATGAGGAACTTTTAGCAGTTCAAGgtgagataaactactgtgggtttcaaagagtcttggaaatgtttgcatca #### Rela_ID1131_8 --> 2 - 1 Original Alignment aaGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAg tccgtactgagggttactctaattaaccttcatgtcattttctttgtcagatGATGTGGAAGTGTATTTTACAGGACCAGGATGGGGCGCTCAAGGCTCATTTTCTCAAGCTGTTGTACACCGTCAAGTTGCCATTGTCTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCAGTGAGAGTACCGATGCAATTGAGATGTCATTCAGATTGGAAACTCAGTGAACCCACTCAGTTCCAATACTTGCCGGATGCAggtaaagcagtgaccaatgtggaggtgtaatgagcattgctactgaaatac Alignment from CESAR aaGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAg tccgtactgagggttactctaattaaccttcatgtcattttctttgtcagatGATGTGGAAGTGTATTTTACAGGACCAGGATGGGGCGCTCAAGGCTCATTTTCTCAAGCTGTTGTACACCGTCAAGTTGCCATTGTCTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCAGTGAGAGTACCGATGCAATTGAGATGTCATTCAGATTGGAAACTCAGTGAACCCACTCAGTTCCAATACTTGCCGGATGCAggtaaagcagtgaccaatgtggaggtgtaatgagcattgctactgaaatac Alignment from Spaln_aa2Genome AAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tccgtactgagggttactctaattaaccttcatgtcattttctttgtcagATGATGTGGAAGTGTATTTTACAGGACCAGGATGGGGCGCTCAAGGCTCATTTTCTCAAGCTGTTGTACACCGTCAAGTTGCCATTGTCTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCAGTGAGAGTACCGATGCAATTGAGATGTCATTCAGATTGGAAACTCAGTGAACCCACTCAGTTCCAATACTTGCCGGATGCAGgtaaagcagtgaccaatgtggaggtgtaatgagcattgctactgaaatac Alignment from Spaln_nt2Genome AAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tccgtactgagggttactctaattaaccttcatgtcattttctttgtcagATGATGTGGAAGTGTATTTTACAGGACCAGGATGGGGCGCTCAAGGCTCATTTTCTCAAGCTGTTGTACACCGTCAAGTTGCCATTGTCTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCAGTGAGAGTACCGATGCAATTGAGATGTCATTCAGATTGGAAACTCAGTGAACCCACTCAGTTCCAATACTTGCCGGATGCAGgtaaagcagtgaccaatgtggaggtgtaatgagcattgctactgaaatac Alignment from Pairagon AAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tccgtactgagggttactctaattaaccttcatgtcattttctttgtcagATGATGTGGAAGTGTATTTTACAGGACCAGGATGGGGCGCTCAAGGCTCATTTTCTCAAGCTGTTGTACACCGTCAAGTTGCCATTGTCTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCAGTGAGAGTACCGATGCAATTGAGATGTCATTCAGATTGGAAACTCAGTGAACCCACTCAGTTCCAATACTTGCCGGATGCAGgtaaagcagtgaccaatgtggaggtgtaatgagcattgctactgaaatac Alignment from Exonerate_protein2genome AAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tccgtactgagggttactctaattaaccttcatgtcattttctttgtcagATGATGTGGAAGTGTATTTTACAGGACCAGGATGGGGCGCTCAAGGCTCATTTTCTCAAGCTGTTGTACACCGTCAAGTTGCCATTGTCTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCAGTGAGAGTACCGATGCAATTGAGATGTCATTCAGATTGGAAACTCAGTGAACCCACTCAGTTCCAATACTTGCCGGATGCAGgtaaagcagtgaccaatgtggaggtgtaatgagcattgctactgaaatac Alignment from Exonerate_coding2genome AAAGAAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tccgtactgagggttactctaattaaccttcatgtcattttctttgTCAGATGATGTGGAAGTGTATTTTACAGGACCAGGATGGGGCGCTCAAGGCTCATTTTCTCAAGCTGTTGTACACCGTCAAGTTGCCATTGTCTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCAGTGAGAGTACCGATGCAATTGAGATGTCATTCAGATTGGAAACTCAGTGAACCCACTCAGTTCCAATACTTGCCGGATGCAGgtaaagcagtgaccaatgtggaggtgtaatgagcattgctactgaaatac Alignment from GeneWise AAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tccgtactgagggttactctaattaaccttcatgtcattttctttgtcagATGATGTGGAAGTGTATTTTACAGGACCAGGATGGGGCGCTCAAGGCTCATTTTCTCAAGCTGTTGTACACCGTCAAGTTGCCATTGTCTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCAGTGAGAGTACCGATGCAATTGAGATGTCATTCAGATTGGAAACTCAGTGAACCCACTCAGTTCCAATACTTGCCGGATGCAGgtaaagcagtgaccaatgtggaggtgtaatgagcattgctactgaaatac #### Rhod_ID528_3 --> 2 - 0 Original Alignment ggCAAGATGACTATGACCGCCTCCGGCCCTTGTTCTATCCTGATGCCAATGTCTTGCTCCTCTGCTTCGATGTGACCAATCCAAACAGCTTTGACAACGTCTCCAACCGG tgattctgctgctctgggcaacaacaagtttctcctctcttctgttgcaggcCAAGATGACTATGTGCACCTCCACCCTGTGTTCTACCCAGATGCGAAT------------GGCTTTGATGTT------CCAAATAGCTTTGACAACATTTCA---CATgtgagtactgaattgatcactttggtgatggttggacatccagaggttca Alignment from CESAR ggCAAGATGACTATGACCGCCTCCGGCCCTTGTTCTATCCTGATGCCAATGTCTTGCTCCTCTGCTTCGATGTGACCAATCCAAACAGCTTTGACAACGTCTCCAACCGG tgattctgctgctctgggcaacaacaagtttctcctctcttctgttgcaggcCAAGATGACTATGTGCACCTCCACCCTGTGTTCTACCCAGATGCGAAT------------GGCTTTGATGTT------CCAAATAGCTTTGACAACATTTCACAT---gtgagtactgaattgatcactttggtgatggttggacatccagaggt Alignment from Spaln_aa2Genome GGCAAGATGACTATGACCGCCTCCGGCCCTTGTTCTATCCTGATGCCAATGTCTTGCTCCTCTGCTTCGATGTGACCAATCCAAACAGCTTTGACAACGTCTCCAAC tgattctgctgctctgggcaacaacaagtttctcctctcttctgttgcagGCCAAGATGACTATGTGCACCTCCACCCTGTGTTCTACCCAGATGCGAAT------------GGCTTTGATGTT------CCAAATAGCTTTGACAACATTTCACATgtgagtactgaattgatcactttggtgatggttggacatccagaggttca Alignment from Spaln_nt2Genome GGCAAGATGACTATGACCGCCTCCGGCCCTTGTTCTATCCTGATGCCAATGTCTTGCTCCTCTGCTTCGATGTGACCAATCCAAACAGCTTTGACAACGTCTCCAAC tgattctgctgctctgggcaacaacaagtttctcctctcttctgttgcagGCCAAGATGACTATGTGCACCTCCACCCTGTGTTCTACCCAGATGCGAATG------------GCTTTGATGT------TCCAAATAGCTTTGACAACATTTCACATgtgagtactgaattgatcactttggtgatggttggacatccagaggttca Alignment from Pairagon GGCAAGATGACTATGACCGCCTCCGGCCCTTGTTCTATCCTGATGCCAATGTCTTGCTCCTCTGCTTCGATGTGACCAATCCAAACAGCTTTGACAACGTCTCCAAC tgattctgctgctctgggcaacaacaagtttctcctctcttctgttgcagGCCAAGATGACTATGTGCACCTCCACCCTGTGTTCTACCCAGATGCGAATG------------GCTTTGATGT------TCCAAATAGCTTTGACAACATTTCACATgtgagtactgaattgatcactttggtgatggttggacatccagaggttca Alignment from Exonerate_protein2genome GGCAAGATGACTATGACCGCCTCCGGCCCTTGTTCTATCCTGATGCCAATGTCTTGCTCCTCTGCTTCGATGTGACCAATCCAAACAGCTTTGACAACGTCTCCAAC tgattctgctgctctgggcaacaacaagtttctcctctcttctgttgcagGCCAAGATGACTATGTGCACCTCCACCCTGTGTTCTACCCAGATGCGAAT------------GGCTTTGATGTTCCAAAT------AGCTTTGACAACATTTCACATgtgagtactgaattgatcactttggtgatggttggacatccagaggttca Alignment from Exonerate_coding2genome GGCAAGATGACTATGACCGCCTCCGGCCCTTGTTCTATCCTGATGCCAATGTCTTGCTCCTCTGCTTCGATGTGACCAATCCAAACAGCTTTGACAACGTCTCCAAC tgattctgctgctctgggcaacaacaagtttctcctctcttctgttgcagGCCAAGATGACTATGTGCACCTCCACCCTGTGTTCTACCCAGATGCGAAT------------GGCTTTGATGTTCCAAAT------AGCTTTGACAACATTTCACATgtgagtactgaattgatcactttggtgatggttggacatccagaggttca Alignment from GeneWise GGCAAGATGACTATGACCGCCTCCGGCCCTTGTTCTATCCTGATGCCAATGTCTTGCTCCTCTGCTTCGATGTGACCAATCCAAACAGCTTTGACAACGTCTCCAACCGG tgattctgctgctctgggcaacaacaagtttctcctctcttctgttgcagGCCAAGATGACTATGTGCACCTCCACCCTGTGTTCTACCCAGATGCGAATGGC------------TTTGATGTT------CCAAATAGCTTTGACAACATTTCA---CATgtgagtactgaattgatcactttggtgatggttggacatccagaggttca #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg tctgggtgcaaaaattcaacattcagggcatttcctacttaacaacgcaggaGAAAATACAGGTGCTGATGAATTCCTCCCCCTGTTGAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTTTACTAACTGCAGGTGAGggtgagtatcattcttacatagtgtatgaccgggtacttgttataggtcct Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg tctgggtgcaaaaattcaacattcagggcatttcctacttaacaacgcaggaGAAAATACAGGTGCTGATGAATTCCTCCCCCTGTTGAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTTTACTAACTGCAGGTGAGggtgagtatcattcttacatagtgtatgaccgggtacttgttataggtcct Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tctgggtgcaaaaattcaacattcagggcatttcctacttaacaacgcagGAGAAAATACAGGTGCTGATGAATTCCTCCCCCTGTTGAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTTTACTAACTGCAGGTGAGGgtgagtatcattcttacatagtgtatgaccgggtacttgttataggtcct Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG---AGG tctgggtgcaaaaattcaacattcagggcatttcctacttaacaacgcagGAGAAAATACAGGTGCTGATGAATTCCTCCCCCTGTTGAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTTTACTAACTGCAGGTGAGGgtgagtatcattcttacatagtgtatgaccgggtacttgttataggtcct Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGA---GAGG tctgggtgcaaaaattcaacattcagggcatttcctacttaacaacgcagGAGAAAATACAGGTGCTGATGAATTCCTCCCCCTGTTGAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTTTACTAACTGCAGGTGAGGgtgagtatcattcttacatagtgtatgaccgggtacttgttataggtcct Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tctgggtgcaaaaattcaacattcagggcatttcctacttaacaacgcagGAGAAAATACAGGTGCTGATGAATTCCTCCCCCTGTTGAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTTTACTAACTGCAGGTGAGGgtgagtatcattcttacatagtgtatgaccgggtacttgttataggtcct Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tctgggtgcaaaaattcaacattcagggcatttcctacttaacaacgcagGAGAAAATACAGGTGCTGATGAATTCCTCCCCCTGTTGAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTTTACTAACTGCAGGTGAGGgtgagtatcattcttacatagtgtatgaccgggtacttgttataggtcct Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tctgggtgcaaaaattcaacattcagggcatttcctacttaacaacgcagGAGAAAATACAGGTGCTGATGAATTCCTCCCCCTGTTGAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTTTACTAACTGCAGGTGAGGgtgagtatcattcttacatagtgtatgaccgggtacttgttataggtcct #### Rin1_ID814_9 --> 2 - 0 Original Alignment gtGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG tgtacaatggtaatccctggtaaaccacatcccaacttgtgtctccctagggGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCCTATTGAGTGGTCTAAGGCAGGCTCAAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCAC---CTA---ACTCCCAGCTTTAAAgtatgtgctgctcccccaagtacctcaacccactatccaataatgcacta Alignment from CESAR gtGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG tgtacaatggtaatccctggtaaaccacatcccaacttgtgtctccctagggGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCCTATTGAGTGGTCTAAGGCAGGCTCAAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTA------ACTCCCAGCTTTAAAgtatgtgctgctcccccaagtacctcaacccactatccaataatgcacta Alignment from Spaln_aa2Genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG tgtacaatggtaatccctggtaaaccacatcccaacttgtgtctccctagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCCTATTGAGTGGTCTAAGGCAGGCTCAAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTA------ACTCCCAGCTTTAAAgtatgtgctgctcccccaagtacctcaacccactatccaataatgcacta Alignment from Spaln_nt2Genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG tgtacaatggtaatccctggtaaaccacatcccaacttgtgtctccctagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCCTATTGAGTGGTCTAAGGCAGGCTCAAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCT------AACTCCCAGCTTTAAAgtatgtgctgctcccccaagtacctcaacccactatccaataatgcacta Alignment from Pairagon GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG tgtacaatggtaatccctggtaaaccacatcccaacttgtgtctccctagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCCTATTGAGTGGTCTAAGGCAGGCTCAAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTA------ACTCCCAGCTTTAAAgtatgtgctgctcccccaagtacctcaacccactatccaataatgcacta Alignment from Exonerate_protein2genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGC tgtacaatggtaatccctggtaaaccacatcccaacttgtgtctccctagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCCTATTGAGTGGTCTAAGGCAGGCTCAAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTAACTCCCAGCTTTAAAgtatgtgctgctcccccaagtacctcaacccactatccaataatgcacta Alignment from Exonerate_coding2genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGC tgtacaatggtaatccctggtaaaccacatcccaacttgtgtctccctagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCCTATTGAGTGGTCTAAGGCAGGCTCAAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTAACTCCCAGCTTTAAAgtatgtgctgctcccccaagtacctcaacccactatccaataatgcacta Alignment from GeneWise GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG tgtacaatggtaatccctggtaaaccacatcccaacttgtgtctccctagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCCTATTGAGTGGTCTAAGGCAGGCTCAAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTA------ACTCCCAGCTTTAAAgtatgtgctgctcccccaagtacctcaacccactatccaataatgcacta #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gtacaaatgtaaccaactaatgtacaaaatattttcctttctttgtatagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTTACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAgtaagtagactgaagaaatttgcccccaagggctcataattcctttcacc Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gtacaaatgtaaccaactaatgtacaaaatattttcctttctttgtatagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTTACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAgtaagtagactgaagaaatttgcccccaagggctcataattcctttcacc Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gtacaaatgtaaccaactaatgtacaaaatattttcctttctttgtatagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTTACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAgtaagtagactgaagaaatttgcccccaagggctcataattcctttcacc Alignment from Spaln_nt2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gtacaaatgtaaccaactaatgtacaaaatattttcctttctttgtatagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTTACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAgtaagtagactgaagaaatttgcccccaagggctcataattcctttcacc Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gtacaaatgtaaccaactaatgtacaaaatattttcctttctttgtatagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTTACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAgtaagtagactgaagaaatttgcccccaagggctcataattcctttcacc Alignment from Exonerate_protein2genome gtacaaatgtaaccaactaatgtacaaaatattttcctttctttgtataggaccgccttatcggggccactgggagcttcagccattttaccttgtgggatctggaaacagtcccaggtccagatgccatagtgcatagggccctaggatggcccacccttgcggcagcagtaagtagactgaagaaatttgcccccaagggctcataattcctttcacc Alignment from Exonerate_coding2genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATT gtacaaatgtaaccaactaatgtacaaaatattttcctttctttgtatagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTTACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAGTAagtagactgaagaaatttgcccccaagggctcataattcctttcacc Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCCCAGGTCCCTGAGGAC gtacaaatgtaaccaactaatgtacaaaatattttcctttctttgtatagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTTACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTTGCGGCAGCAGTA---AGTAGACTGAAGAAATTTgcccccaagggctcataattcctttc #### Rnls_ID6819_2 --> 1 - 1 Original Alignment tTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAg gacaaagcaagacactgttgaataaactcccagcatctctcattccctagtTTTTATGAGGGACTTTTGATGCATGAAATTTTAAAGCCTATAACCTCACCCATTGAAGGAATGAAAGGAAAAGAAGGAGATTGTAATTTTGTAGCACCTCAAGGATTCTCTTCACTTATTACATACTACCTGAAAAAGCCTggtaagtagtggagattatgtcctgtgaggtaatggtggtcccttcagatc Alignment from CESAR tTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAg gacaaagcaagacactgttgaataaactcccagcatctctcattccctagtTTTTATGAGGGACTTTTGATGCATGAAATTTTAAAGCCTATAACCTCACCCATTGAAGGAATGAAAGGAAAAGAAGGAGATTGTAATTTTGTAGCACCTCAAGGATTCTCTTCACTTATTACATACTACCTGAAAAAGCCTggtaagtagtggagattatgtcctgtgaggtaatggtggtcccttcagatc Alignment from Spaln_aa2Genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gacaaagcaagacactgttgaataaactcccagcatctctcattccctagTTTTTATGAGGGACTTTTGATGCATGAAATTTTAAAGCCTATAACCTCACCCATTGAAGGAATGAAAGGAAAAGAAGGAGATTGTAATTTTGTAGCACCTCAAGGATTCTCTTCACTTATTACATACTACCTGAAAAAGCCTGgtaagtagtggagattatgtcctgtgaggtaatggtggtcccttcagatc Alignment from Spaln_nt2Genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gacaaagcaagacactgttgaataaactcccagcatctctcattccctagTTTTTATGAGGGACTTTTGATGCATGAAATTTTAAAGCCTATAACCTCACCCATTGAAGGAATGAAAGGAAAAGAAGGAGATTGTAATTTTGTAGCACCTCAAGGATTCTCTTCACTTATTACATACTACCTGAAAAAGCCTGgtaagtagtggagattatgtcctgtgaggtaatggtggtcccttcagatc Alignment from Pairagon TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gacaaagcaagacactgttgaataaactcccagcatctctcattccctagTTTTTATGAGGGACTTTTGATGCATGAAATTTTAAAGCCTATAACCTCACCCATTGAAGGAATGAAAGGAAAAGAAGGAGATTGTAATTTTGTAGCACCTCAAGGATTCTCTTCACTTATTACATACTACCTGAAAAAGCCTGgtaagtagtggagattatgtcctgtgaggtaatggtggtcccttcagatc Alignment from Exonerate_protein2genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gacaaagcaagacactgttgaataaactcccagcatctctcattccctagTTTTTATGAGGGACTTTTGATGCATGAAATTTTAAAGCCTATAACCTCACCCATTGAAGGAATGAAAGGAAAAGAAGGAGATTGTAATTTTGTAGCACCTCAAGGATTCTCTTCACTTATTACATACTACCTGAAAAAGCCTGgtaagtagtggagattatgtcctgtgaggtaatggtggtcccttcagatc Alignment from Exonerate_coding2genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gacaaagcaagacactgttgaataaactcccagcatctctcattccctagTTTTTATGAGGGACTTTTGATGCATGAAATTTTAAAGCCTATAACCTCACCCATTGAAGGAATGAAAGGAAAAGAAGGAGATTGTAATTTTGTAGCACCTCAAGGATTCTCTTCACTTATTACATACTACCTGAAAAAGCCTGgtaagtagtggagattatgtcctgtgaggtaatggtggtcccttcagatc Alignment from GeneWise TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gacaaagcaagacactgttgaataaactcccagcatctctcattccctagTTTTTATGAGGGACTTTTGATGCATGAAATTTTAAAGCCTATAACCTCACCCATTGAAGGAATGAAAGGAAAAGAAGGAGATTGTAATTTTGTAGCACCTCAAGGATTCTCTTCACTTATTACATACTACCTGAAAAAGCCTGgtaagtagtggagattatgtcctgtgaggtaatggtggtcccttcagatc #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttgaccacctcagtgttatatcttattgtgtgtgtctgtcatctaaacagtCACATTCCCAGCAATATAGAAGGATTATACCTGATTGATGGTGTTCCATTCTCCTGCTGTAATCCCCACTCACGA------TGTTTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCCCTTCTC---CCTCAGCAGCCGAATCTAAACCTGCGGTCCCAGGGATGCCACAAAGTGCTGTTTGAACGCCTGCAAGGATTATCTGGAACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgttggtcaccaaaatcccacgtccctcatcaagatctctaacctctgtag Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttgaccacctcagtgttatatcttattgtgtgtgtctgtcatctaaacagtCACATTCCCAGCAATATAGAAGGATTATACCTGATTGATGGTGTTCCATTCTCCTGCTGTAATCCCCACTCA---CGA---TGTTTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCCCTTCTC---CCTCAGCAGCCGAATCTAAACCTGCGGTCCCAGGGATGCCACAAAGTGCTGTTTGAACGCCTGCAAGGATTATCTGGAACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgttggtcaccaaaatcccacgtccctcatcaagatctctaacctctgtag Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttgaccacctcagtgttatatcttattgtgtgtgtctgtcatctaaacagTCACATTCCCAGCAATATAGAAGGATTATACCTGATTGATGGTGTTCCATTCTCCTGCTGTAATCCCCACTCA------CGATGTTTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCCCTTCTC---CCTCAGCAGCCGAATCTAAACCTGCGGTCCCAGGGATGCCACAAAGTGCTGTTTGAACGCCTGCAAGGATTATCTGGAACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgttggtcaccaaaatcccacgtccctcatcaagatctctaacctctgtag Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttgaccacctcagtgttatatcttattgtgtgtgtctgtcatctaaacagTCACATTCCCAGCAATATAGAAGGATTATACCTGATTGATGGTGTTCCATTCTCCTGCTGTAATCCCCACTCA------CGATGTTTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCCCTTCTC---CCTCAGCAGCCGAATCTAAACCTGCGGTCCCAGGGATGCCACAAAGTGCTGTTTGAACGCCTGCAAGGATTATCTGGAACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgttggtcaccaaaatcccacgtccctcatcaagatctctaacctctgtag Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttgaccacctcagtgttatatcttattgtgtgtgtctgtcatctaaacagtcacattcccag------------CAATATAGAAGGATTATACCTGATTGATGGTGTTCCATTCTCCTGCTGTAATCCCCACTCACGA------TGTTTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCCCTTCTC---CCTCAGCAGCCGAATCTAAACCTGCGGTCCCAGGGATGCCACAAAGTGCTGTTTGAACGCCTGCAAGGATTATCTGGAACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgttggtcaccaaaatcccacgtccctcatcaagatctctaacctctgtag Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttgaccacctcagtgttatatcttattgtgtgtgtctgtcatctaaacagTCACATTCCCAGCAATATAGAAGGATTATACCTGATTGATGGTGTTCCATTCTCCTGCTGTAATCCCCACTCA------CGATGTTTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCCCTTCTC---CCTCAGCAGCCGAATCTAAACCTGCGGTCCCAGGGATGCCACAAAGTGCTGTTTGAACGCCTGCAAGGATTATCTGGAACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgttggtcaccaaaatcccacgtccctcatcaagatctctaacctctgtag Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttgaccacctcagtgttatatcttattgtgtgtgtctgtcatctaaacagTCACATTCCCAGCAATATAGAAGGATTATACCTGATTGATGGTGTTCCATTCTCCTGCTGTAATCCCCACTCA------CGATGTTTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCCCTTCTC---CCTCAGCAGCCGAATCTAAACCTGCGGTCCCAGGGATGCCACAAAGTGCTGTTTGAACGCCTGCAAGGATTATCTGGAACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgttggtcaccaaaatcccacgtccctcatcaagatctctaacctctgtag Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttgaccacctcagtgttatatcttattgtgtgtgtctgtcatctaaacagTCACATTCCCAGCAATATAGAAGGATTATACCTGATTGATGGTGTTCCATTCTCCTGCTGTAATCCCCACTCACGA------TGTTTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCCCTTCTC---CCTCAGCAGCCGAATCTAAACCTGCGGTCCCAGGGATGCCACAAAGTGCTGTTTGAACGCCTGCAAGGATTATCTGGAACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgttggtcaccaaaatcccacgtccctcatcaagatctctaacctctgtag #### Rorb_ID4532_8 --> 2 - 1 Original Alignment gtTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAg caaaggttgcaaccacatcattatcttcttccctttttgttttcttttaggtTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCAAAGAATCTATGTTCCTTGCAGCTGAACGAGGAACAGATTGCTCTGTTCTCCTCTGCTGTTCTGATCTCCCCAggtaattaaatgttcttcatagctggcttcactatacctcaacaaagcctt Alignment from CESAR gtTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAg caaaggttgcaaccacatcattatcttcttccctttttgttttcttttaggtTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCAAAGAATCTATGTTCCTTGCAGCTGAACGAGGAACAGATTGCTCTGTTCTCCTCTGCTGTTCTGATCTCCCCAggtaattaaatgttcttcatagctggcttcactatacctcaacaaagcctt Alignment from Spaln_aa2Genome GTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAG caaaggttgcaaccacatcattatcttcttccctttttgttttcttttagGTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCAAAGAATCTATGTTCCTTGCAGCTGAACGAGGAACAGATTGCTCTGTTCTCCTCTGCTGTTCTGATCTCCCCAGgtaattaaatgttcttcatagctggcttcactatacctcaacaaagcctt Alignment from Spaln_nt2Genome GTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAG caaaggttgcaaccacatcattatcttcttccctttttgttttcttttagGTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCAAAGAATCTATGTTCCTTGCAGCTGAACGAGGAACAGATTGCTCTGTTCTCCTCTGCTGTTCTGATCTCCCCAGgtaattaaatgttcttcatagctggcttcactatacctcaacaaagcctt Alignment from Pairagon GTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAG caaaggttgcaaccacatcattatcttcttccctttttgttttcttttagGTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCAAAGAATCTATGTTCCTTGCAGCTGAACGAGGAACAGATTGCTCTGTTCTCCTCTGCTGTTCTGATCTCCCCAGgtaattaaatgttcttcatagctggcttcactatacctcaacaaagcctt Alignment from Exonerate_protein2genome GTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAG caaaggttgcaaccacatcattatcttcttccctttttgttttcttttagGTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCAAAGAATCTATGTTCCTTGCAGCTGAACGAGGAACAGATTGCTCTGTTCTCCTCTGCTGTTCTGATCTCCCCAGgtaattaaatgttcttcatagctggcttcactatacctcaacaaagcctt Alignment from Exonerate_coding2genome GTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAG caaaggttgcaaccacatcattatcttcttccctttttgttttcttttagGTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCAAAGAATCTATGTTCCTTGCAGCTGAACGAGGAACAGATTGCTCTGTTCTCCTCTGCTGTTCTGATCTCCCCAGgtaattaaatgttcttcatagctggcttcactatacctcaacaaagcctt Alignment from GeneWise GTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAG caaaggttgcaaccacatcattatcttcttccctttttgttttcttttagGTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCAAAGAATCTATGTTCCTTGCAGCTGAACGAGGAACAGATTGCTCTGTTCTCCTCTGCTGTTCTGATCTCCCCAGgtaattaaatgttcttcatagctggcttcactatacctcaacaaagcctt #### Rorb_ID4537_5 --> 2 - 0 Original Alignment atCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accaccaagaggatttttttatgctatatttcttgttcatcaaatcacagatCGAGTAGTGCAGAACATCATTAAGTCCCATCTAGAAACATGCCAGTATGCTATGAAAGAATTGCACCAGCTTGCATGGCAGACCCACACTTATGAGGAGATTAAGGCATACCAAACAAAGgtatgtcagacgctgctgtctgattgttgccctgatagtactgtctcaga Alignment from CESAR atCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accaccaagaggatttttttatgctatatttcttgttcatcaaatcacagatCGAGTAGTGCAGAACATCATTAAGTCCCATCTAGAAACATGCCAGTATGCTATGAAAGAATTGCACCAGCTTGCATGGCAGACCCACACTTATGAGGAGATTAAGGCATACCAAACAAAGgtatgtcagacgctgctgtctgattgttgccctgatagtactgtctcaga Alignment from Spaln_aa2Genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accaccaagaggatttttttatgctatatttcttgttcatcaaatcacagATCGAGTAGTGCAGAACATCATTAAGTCCCATCTAGAAACATGCCAGTATGCTATGAAAGAATTGCACCAGCTTGCATGGCAGACCCACACTTATGAGGAGATTAAGGCATACCAAACAAAGgtatgtcagacgctgctgtctgattgttgccctgatagtactgtctcaga Alignment from Spaln_nt2Genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accaccaagaggatttttttatgctatatttcttgttcatcaaatcacagATCGAGTAGTGCAGAACATCATTAAGTCCCATCTAGAAACATGCCAGTATGCTATGAAAGAATTGCACCAGCTTGCATGGCAGACCCACACTTATGAGGAGATTAAGGCATACCAAACAAAGgtatgtcagacgctgctgtctgattgttgccctgatagtactgtctcaga Alignment from Pairagon ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accaccaagaggatttttttatgctatatttcttgttcatcaaatcacagATCGAGTAGTGCAGAACATCATTAAGTCCCATCTAGAAACATGCCAGTATGCTATGAAAGAATTGCACCAGCTTGCATGGCAGACCCACACTTATGAGGAGATTAAGGCATACCAAACAAAGgtatgtcagacgctgctgtctgattgttgccctgatagtactgtctcaga Alignment from Exonerate_protein2genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accaccaagaggatttttttatgctatatttcttgttcatcaaatcacagATCGAGTAGTGCAGAACATCATTAAGTCCCATCTAGAAACATGCCAGTATGCTATGAAAGAATTGCACCAGCTTGCATGGCAGACCCACACTTATGAGGAGATTAAGGCATACCAAACAAAGgtatgtcagacgctgctgtctgattgttgccctgatagtactgtctcaga Alignment from Exonerate_coding2genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accaccaagaggatttttttatgctatatttcttgttcatcaaatcacagATCGAGTAGTGCAGAACATCATTAAGTCCCATCTAGAAACATGCCAGTATGCTATGAAAGAATTGCACCAGCTTGCATGGCAGACCCACACTTATGAGGAGATTAAGGCATACCAAACAAAGgtatgtcagacgctgctgtctgattgttgccctgatagtactgtctcaga Alignment from GeneWise ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accaccaagaggatttttttatgctatatttcttgttcatcaaatcacagATCGAGTAGTGCAGAACATCATTAAGTCCCATCTAGAAACATGCCAGTATGCTATGAAAGAATTGCACCAGCTTGCATGGCAGACCCACACTTATGAGGAGATTAAGGCATACCAAACAAAGgtatgtcagacgctgctgtctgattgttgccctgatagtactgtctcaga #### Rpp30_ID7082_4 --> 0 - 0 Original Alignment GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG aggatacacaacagcagccagaccatgagatccctcccattcttccttagGGGAAACCGAGACCAATTAAGATTTTGACAAGACTGACAATAATTGTAACAGATCCAGCTCACTGCAATATTTTAgtaggtagagctgctgaaagtaagaataggataggagaaaatctgatatt Alignment from CESAR GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG aggatacacaacagcagccagaccatgagatccctcccattcttccttagGGGAAACCGAGACCAATTAAGATTTTGACAAGACTGACAATAATTGTAACAGATCCAGCTCACTGCAATATTTTAgtaggtagagctgctgaaagtaagaataggataggagaaaatctgatatt Alignment from Spaln_aa2Genome GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG aggatacacaacagcagccagaccatgagatccctcccattcttccttagGGGAAACCGAGACCAATTAAGATTTTGACAAGACTGACAATAATTGTAACAGATCCAGCTCACTGCAATATTTTAgtaggtagagctgctgaaagtaagaataggataggagaaaatctgatatt Alignment from Spaln_nt2Genome GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG aggatacacaacagcagccagaccatgagatccctcccattcttccttagGGGAAACCGAGACCAATTAAGATTTTGACAAGACTGACAATAATTGTAACAGATCCAGCTCACTGCAATATTTTAgtaggtagagctgctgaaagtaagaataggataggagaaaatctgatatt Alignment from Pairagon GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG aggatacacaacagcagccagaccatgagatccctcccattcttccttagGGGAAACCGAGACCAATTAAGATTTTGACAAGACTGACAATAATTGTAACAGATCCAGCTCACTGCAATATTTTAgtaggtagagctgctgaaagtaagaataggataggagaaaatctgatatt Alignment from Exonerate_protein2genome GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG aggatacacaacagcagccagaccatgagatccctcccattcttccttagGGGAAACCGAGACCAATTAAGATTTTGACAAGACTGACAATAATTGTAACAGATCCAGCTCACTGCAATATTTTAgtaggtagagctgctgaaagtaagaataggataggagaaaatctgatatt Alignment from Exonerate_coding2genome GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG aggatacacaacagcagccagaccatgagatccctcccattcttccttagGGGAAACCGAGACCAATTAAGATTTTGACAAGACTGACAATAATTGTAACAGATCCAGCTCACTGCAATATTTTAgtaggtagagctgctgaaagtaagaataggataggagaaaatctgatatt Alignment from GeneWise GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG aggatacacaacagcagccagaccatgagatccctcccattcttccttagGGGAAACCGAGACCAATTAAGATTTTGACAAGACTGACAATAATTGTAACAGATCCAGCTCACTGCAATATTTTAgtaggtagagctgctgaaagtaagaataggataggagaaaatctgatatt #### Rpp30_ID7083_5 --> 0 - 0 Original Alignment AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT ggtaggctttgccacattctgtgatttattgtcttgtacttgactcaaagCAAGCAACCTCATCAAGGGTCCAGTTGTATGATATTGTAGCCATCTTTCCCAAAACAAAAAGGCTTTTCCGGgtgagtattagaacacaatgtagagatgcatctagcataacagttggttt Alignment from CESAR AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT ggtaggctttgccacattctgtgatttattgtcttgtacttgactcaaagCAAGCAACCTCATCAAGGGTCCAGTTGTATGATATTGTAGCCATCTTTCCCAAAACAAAAAGGCTTTTCCGGgtgagtattagaacacaatgtagagatgcatctagcataacagttggttt Alignment from Spaln_aa2Genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT ggtaggctttgccacattctgtgatttattgtcttgtacttgactcaaagCAAGCAACCTCATCAAGGGTCCAGTTGTATGATATTGTAGCCATCTTTCCCAAAACAAAAAGGCTTTTCCGGgtgagtattagaacacaatgtagagatgcatctagcataacagttggttt Alignment from Spaln_nt2Genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT ggtaggctttgccacattctgtgatttattgtcttgtacttgactcaaagCAAGCAACCTCATCAAGGGTCCAGTTGTATGATATTGTAGCCATCTTTCCCAAAACAAAAAGGCTTTTCCGGgtgagtattagaacacaatgtagagatgcatctagcataacagttggttt Alignment from Pairagon AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT ggtaggctttgccacattctgtgatttattgtcttgtacttgactcaaagCAAGCAACCTCATCAAGGGTCCAGTTGTATGATATTGTAGCCATCTTTCCCAAAACAAAAAGGCTTTTCCGGgtgagtattagaacacaatgtagagatgcatctagcataacagttggttt Alignment from Exonerate_protein2genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT ggtaggctttgccacattctgtgatttattgtcttgtacttgactcaaagCAAGCAACCTCATCAAGGGTCCAGTTGTATGATATTGTAGCCATCTTTCCCAAAACAAAAAGGCTTTTCCGGgtgagtattagaacacaatgtagagatgcatctagcataacagttggttt Alignment from Exonerate_coding2genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT ggtaggctttgccacattctgtgatttattgtcttgtacttgactcaaagCAAGCAACCTCATCAAGGGTCCAGTTGTATGATATTGTAGCCATCTTTCCCAAAACAAAAAGGCTTTTCCGGgtgagtattagaacacaatgtagagatgcatctagcataacagttggttt Alignment from GeneWise AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT ggtaggctttgccacattctgtgatttattgtcttgtacttgactcaaagCAAGCAACCTCATCAAGGGTCCAGTTGTATGATATTGTAGCCATCTTTCCCAAAACAAAAAGGCTTTTCCGGgtgagtattagaacacaatgtagagatgcatctagcataacagttggttt #### Rpp30_ID7088_8 --> 0 - 0 Original Alignment AATGTAATTCTGTCCAGTGCTGCAGAAAGG cagtatgaaagtgatcattggttactctgtggtcggtggctctgtcttagAATGTTATTCTCTCAAGTACAGCAGCAAGGgtgagctcaaactgggagtggttgagacacttaacataggcaactctctt Alignment from CESAR AATGTAATTCTGTCCAGTGCTGCAGAAAGG cagtatgaaagtgatcattggttactctgtggtcggtggctctgtcttagAATGTTATTCTCTCAAGTACAGCAGCAAGGgtgagctcaaactgggagtggttgagacacttaacataggcaactctctt Alignment from Spaln_aa2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG cagtatgaaagtgatcattggttactctgtggtcggtggctctgtcttagAATGTTATTCTCTCAAGTACAGCAGCAAGGgtgagctcaaactgggagtggttgagacacttaacataggcaactctctt Alignment from Spaln_nt2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG cagtatgaaagtgatcattggttactctgtggtcggtggctctgtcttagAATGTTATTCTCTCAAGTACAGCAGCAAGGgtgagctcaaactgggagtggttgagacacttaacataggcaactctctt Alignment from Pairagon AATGTAATTCTGTCCAGTGCTGCAGAAAGG cagtatgaaagtgatcattggttactctgtggtcggtggctctgtcttagAATGTTATTCTCTCAAGTACAGCAGCAAGGgtgagctcaaactgggagtggttgagacacttaacataggcaactctctt Alignment from Exonerate_protein2genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG cagtatgaaagtgatcattggttactctgtggtcggtggctctgtcttagAATGTTATTCTCTCAAGTACAGCAGCAAGGgtgagctcaaactgggagtggttgagacacttaacataggcaactctctt Alignment from Exonerate_coding2genome cagtatgaaagtgatcattggttactctgtggtcggtggctctgtcttagaatgttattctctcaagtacagcagcaagggtgagctcaaactgggagtggttgagacacttaacataggcaactctctt Alignment from GeneWise AATGTAATTCTGTCCAGTGCTGCAGAAAGG cagtatgaaagtgatcattggttactctgtggtcggtggctctgtcttagAATGTTATTCTCTCAAGTACAGCAGCAAGGgtgagctcaaactgggagtggttgagacacttaacataggcaactctctt #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTAACAGTAGTCCCCGTACACCCATCaggtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTAACAGTAGTCCCCGTACACCCATCaggtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTAACAGTAGTCCCCGTACACCCATCAGgtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTAACAGTAGTCCCCGTACACCCATCAGgtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTAACAGTAGTCCCCGTACACCCATCAGgtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTAACAGTAGTCCCCGTACACCCATCAGgtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from Exonerate_coding2genome agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagagttttatgtatgtggcaccttttgtcctagacagcatcaaagaaggtttttcattccagcccaagctgcgttccccacgatgccttaacagtagtccccgtacacccatcaggtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG agacagggtcatgccatctggctttactcgtcaggtgcgcttgcccacagAGTTTTATGTATGTGGCACCTTTTGTCCTAGACAGCATCAAAGAAGGTTTTTCATTCCAGCCCAAGCTGCGTTCCCCACGATGCCTTAACAGTAGTCCCCGTACACCCATCAGgtaagcgaggtcagataattccaaacatgcaccactactcagcagagatg #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCTGTGTAGACCCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from CESAR AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCTGTGTAGACCCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from Spaln_aa2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCTGTGTAGACCCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCTGTGTAGACCCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from Pairagon AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCTGTGTAGACCCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from Exonerate_protein2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCTGTGTAGACCCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from Exonerate_coding2genome agatgccaaagtgacatcatggcattgttattttccctccctcacttcagcggcaccctttctacagacatatcaattgggatgatccattagcctgctgtgtagaccctctcttcaggccaagtctggtaagtttacggacattggtatttgttactgttactcactattggggtca Alignment from GeneWise AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG agatgccaaagtgacatcatggcattgttattttccctccctcacttcagCGGCACCCTTTCTACAGACATATCAATTGGGATGATCCATTAGCCTGCTGTGTAGACCCTCTCTTCAGGCCAAGTCTGgtaagtttacggacattggtatttgttactgttactcactattggggtca #### Rps6kb2_ID373_9 --> 1 - 0 Original Alignment gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccatgcgggactatgactgcctctcctgttctccattgcaggGTGCCGGAGATTCTGTTGCGCACGGGGCATAATCGGGCAGTGGATTGGTGGAGCCTTGGTGCTCTAATGTATGACATGCTCACTGAATCAgtaagtcccttccactaggtgatattggtattggagtgtaactgcattga Alignment from CESAR gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccatgcgggactatgactgcctctcctgttctccattgcaggGTGCCGGAGATTCTGTTGCGCACGGGGCATAATCGGGCAGTGGATTGGTGGAGCCTTGGTGCTCTAATGTATGACATGCTCACTGAATCAgtaagtcccttccactaggtgatattggtattggagtgtaactgcattga Alignment from Spaln_aa2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccatgcgggactatgactgcctctcctgttctccattgcagGGTGCCGGAGATTCTGTTGCGCACGGGGCATAATCGGGCAGTGGATTGGTGGAGCCTTGGTGCTCTAATGTATGACATGCTCACTGAATCAgtaagtcccttccactaggtgatattggtattggagtgtaactgcattga Alignment from Spaln_nt2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccatgcgggactatgactgcctctcctgttctccattgcagGGTGCCGGAGATTCTGTTGCGCACGGGGCATAATCGGGCAGTGGATTGGTGGAGCCTTGGTGCTCTAATGTATGACATGCTCACTGAATCAgtaagtcccttccactaggtgatattggtattggagtgtaactgcattga Alignment from Pairagon GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccatgcgggactatgactgcctctcctgttctccattgcagGGTGCCGGAGATTCTGTTGCGCACGGGGCATAATCGGGCAGTGGATTGGTGGAGCCTTGGTGCTCTAATGTATGACATGCTCACTGAATCAgtaagtcccttccactaggtgatattggtattggagtgtaactgcattga Alignment from Exonerate_protein2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccatgcgggactatgactgcctctcctgttctccattgcagGGTGCCGGAGATTCTGTTGCGCACGGGGCATAATCGGGCAGTGGATTGGTGGAGCCTTGGTGCTCTAATGTATGACATGCTCACTGAATCAgtaagtcccttccactaggtgatattggtattggagtgtaactgcattga Alignment from Exonerate_coding2genome agggataccccatgcgggactatgactgcctctcctgttctccattgcagggtgccggagattctgttgcgcacggggcataatcgggcagtggattggtggagccttggtgctctaatgtatgacatgctcactgaatcagtaagtcccttccactaggtgatattggtattggagtgtaactgcattga Alignment from GeneWise GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG agggataccccatgcgggactatgactgcctctcctgttctccattgcagGGTGCCGGAGATTCTGTTGCGCACGGGGCATAATCGGGCAGTGGATTGGTGGAGCCTTGGTGCTCTAATGTATGACATGCTCACTGAATCAgtaagtcccttccactaggtgatattggtattggagtgtaactgcattga #### Rps6kb2_ID374_8 --> 2 - 2 Original Alignment gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACat aaacttagttttcccagtgtcaattgacttctttcccttcttgtttctagggCACATCAAACTAACATACTTGGGTCTCTGCAAGGAGTCAATTCATGAGGGCACTATCAATCACACTTTCTGTGGTACCAAAGAGTACatgtatgttttgagagggataccccatgcgggactatgactgtgacttcgcc Alignment from CESAR gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACat aaacttagttttcccagtgtcaattgacttctttcccttcttgtttctagggCACATCAAACTAACATACTTGGGTCTCTGCAAGGAGTCAATTCATGAGGGCACTATCAATCACACTTTCTGTGGTACCAAAGAGTACatgtatgttttgagagggataccccatgcgggactatgactgcctctcctgt Alignment from Spaln_aa2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT aaacttagttttcccagtgtcaattgacttctttcccttcttgtttctagGGCACATCAAACTAACATACTTGGGTCTCTGCAAGGAGTCAATTCATGAGGGCACTATCAATCACACTTTCTGTGGTACCAAAGAGTACATgtatgttttgagagggataccccatgcgggactatgactgtgacttcgcc Alignment from Spaln_nt2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT aaacttagttttcccagtgtcaattgacttctttcccttcttgtttctagGGCACATCAAACTAACATACTTGGGTCTCTGCAAGGAGTCAATTCATGAGGGCACTATCAATCACACTTTCTGTGGTACCAAAGAGTACATgtatgttttgagagggataccccatgcgggactatgactgtgacttcgcc Alignment from Pairagon GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT aaacttagttttcccagtgtcaattgacttctttcccttcttgtttctagGGCACATCAAACTAACATACTTGGGTCTCTGCAAGGAGTCAATTCATGAGGGCACTATCAATCACACTTTCTGTGGTACCAAAGAGTACATgtatgttttgagagggataccccatgcgggactatgactgtgacttcgcc Alignment from Exonerate_protein2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT aaacttagttttcccagtgtcaattgacttctttcccttcttgtttctagGGCACATCAAACTAACATACTTGGGTCTCTGCAAGGAGTCAATTCATGAGGGCACTATCAATCACACTTTCTGTGGTACCAAAGAGTACATgtatgttttgagagggataccccatgcgggactatgactgtgacttcgcc Alignment from Exonerate_coding2genome GACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGG aaacttagttttcccagtgtcaattgacttctttcccttcttgtttctagggcacatcaaactaacatacttgggtctctgcaaggagtcaattcatgagggcactatcaatcacactttctgtggtaccaaAGAGTACATGTATGTTTTGAGAGG---GATACCCCATGCGGGACTATGACTGTGACTTC Alignment from GeneWise GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT aaacttagttttcccagtgtcaattgacttctttcccttcttgtttctagGGCACATCAAACTAACATACTTGGGTCTCTGCAAGGAGTCAATTCATGAGGGCACTATCAATCACACTTTCTGTGGTACCAAAGAGTACATgtatgttttgagagggataccccatgcgggactatgactgtgacttcgcc #### Rps6kb2_ID378_4 --> 0 - 0 Original Alignment GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG gtgcatgtagcagaaacagagccattcaaagaactgccttcctctcctagGTCTTGCAGGTAAGAAAAGTGCAAGGCACAAACTTGGGGAAGATATACGCCATGAAGATATTAAGGAAGgtgagtagtctgctcagccaaaaaagaataaccagtgttactcaaacctg Alignment from CESAR GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG gtgcatgtagcagaaacagagccattcaaagaactgccttcctctcctagGTCTTGCAGGTAAGAAAAGTGCAAGGCACAAACTTGGGGAAGATATACGCCATGAAGATATTAAGGAAGgtgagtagtctgctcagccaaaaaagaataaccagtgttactcaaacctg Alignment from Spaln_aa2Genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG gtgcatgtagcagaaacagagccattcaaagaactgccttcctctcctagGTCTTGCAGGTAAGAAAAGTGCAAGGCACAAACTTGGGGAAGATATACGCCATGAAGATATTAAGGAAGgtgagtagtctgctcagccaaaaaagaataaccagtgttactcaaacctg Alignment from Spaln_nt2Genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG gtgcatgtagcagaaacagagccattcaaagaactgccttcctctcctagGTCTTGCAGGTAAGAAAAGTGCAAGGCACAAACTTGGGGAAGATATACGCCATGAAGATATTAAGGAAGgtgagtagtctgctcagccaaaaaagaataaccagtgttactcaaacctg Alignment from Pairagon GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG gtgcatgtagcagaaacagagccattcaaagaactgccttcctctcctagGTCTTGCAGGTAAGAAAAGTGCAAGGCACAAACTTGGGGAAGATATACGCCATGAAGATATTAAGGAAGgtgagtagtctgctcagccaaaaaagaataaccagtgttactcaaacctg Alignment from Exonerate_protein2genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG gtgcatgtagcagaaacagagccattcaaagaactgccttcctctcctagGTCTTGCAGGTAAGAAAAGTGCAAGGCACAAACTTGGGGAAGATATACGCCATGAAGATATTAAGGAAGgtgagtagtctgctcagccaaaaaagaataaccagtgttactcaaacctg Alignment from Exonerate_coding2genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG gtgcatgtagcagaaacagagccattcaaagaactgccttcctctcctagGTCTTGCAGGTAAGAAAAGTGCAAGGCACAAACTTGGGGAAGATATACGCCATGAAGATATTAAGGAAGgtgagtagtctgctcagccaaaaaagaataaccagtgttactcaaacctg Alignment from GeneWise GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG gtgcatgtagcagaaacagagccattcaaagaactgccttcctctcctagGTCTTGCAGGTAAGAAAAGTGCAAGGCACAAACTTGGGGAAGATATACGCCATGAAGATATTAAGGAAGgtgagtagtctgctcagccaaaaaagaataaccagtgttactcaaacctg #### Rrp12_ID8291_32 --> 2 - 0 Original Alignment ctGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG ttgaccatatcttggtcttcctgtaccctgactgtgtgttcttcacatagctGGAGGGTCTGGAATCCATCACCCAGTGGCAGATAAGGCAGCACCAGGCGCTGAATATAAAGCTACAgtaaggcattacaggtacatatcaagccatatagaaacagatctaatcta Alignment from CESAR ctGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG ttgaccatatcttggtcttcctgtaccctgactgtgtgttcttcacatagctGGAGGGTCTGGAATCCATCACCCAGTGGCAGATAAGGCAGCACCAGGCGCTGAATATAAAGCTACAgtaaggcattacaggtacatatcaagccatatagaaacagatctaatcta Alignment from Spaln_aa2Genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG ttgaccatatcttggtcttcctgtaccctgactgtgtgttcttcacatagCTGGAGGGTCTGGAATCCATCACCCAGTGGCAGATAAGGCAGCACCAGGCGCTGAATATAAAGCTACAgtaaggcattacaggtacatatcaagccatatagaaacagatctaatcta Alignment from Spaln_nt2Genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG ttgaccatatcttggtcttcctgtaccctgactgtgtgttcttcacatagCTGGAGGGTCTGGAATCCATCACCCAGTGGCAGATAAGGCAGCACCAGGCGCTGAATATAAAGCTACAgtaaggcattacaggtacatatcaagccatatagaaacagatctaatcta Alignment from Pairagon CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG ttgaccatatcttggtcttcctgtaccctgactgtgtgttcttcacatagCTGGAGGGTCTGGAATCCATCACCCAGTGGCAGATAAGGCAGCACCAGGCGCTGAATATAAAGCTACAgtaaggcattacaggtacatatcaagccatatagaaacagatctaatcta Alignment from Exonerate_protein2genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG ttgaccatatcttggtcttcctgtaccctgactgtgtgttcttcacatagCTGGAGGGTCTGGAATCCATCACCCAGTGGCAGATAAGGCAGCACCAGGCGCTGAATATAAAGCTACAgtaaggcattacaggtacatatcaagccatatagaaacagatctaatcta Alignment from Exonerate_coding2genome ttgaccatatcttggtcttcctgtaccctgactgtgtgttcttcacatagctggagggtctggaatccatcacccagtggcagataaggcagcaccaggcgctgaatataaagctacagtaaggcattacaggtacatatcaagccatatagaaacagatctaatcta Alignment from GeneWise CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG ttgaccatatcttggtcttcctgtaccctgactgtgtgttcttcacatagCTGGAGGGTCTGGAATCCATCACCCAGTGGCAGATAAGGCAGCACCAGGCGCTGAATATAAAGCTACAgtaaggcattacaggtacatatcaagccatatagaaacagatctaatcta #### Rrp12_ID8294_29 --> 2 - 1 Original Alignment ccACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAg atgcagaagtccaatgaggacctaagtcaggctacttggtgtctccttagctGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTCAAGTTGAGTTCTGACGGACGCCTTATCATACAGGAAGAAAAAGATGGGAATAAGGCAGAGGAAGAAGATGGTACGAGAagtaagagcaggttcagcgtacgcaagtcatatgtttagctcaagaccatt Alignment from CESAR ccACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAg atgcagaagtccaatgaggacctaagtcaggctacttggtgtctccttagctGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTCAAGTTGAGTTCTGACGGACGCCTTATCATACAGGAAGAAAAAGATGGGAATAAGGCAGAGGAAGAAGATGGTACGAGAagtaagagcaggttcagcgtacgcaagtcatatgtttagctcaagaccatt Alignment from Spaln_aa2Genome CCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAG atgcagaagtccaatgaggacctaagtcaggctacttggtgtctccttagCTGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTCAAGTTGAGTTCTGACGGACGCCTTATCATACAGGAAGAAAAAGATGGGAATAAGGCAGAGGAAGAAGATGGTACGAGAAgtaagagcaggttcagcgtacgcaagtcatatgtttagctcaagaccatt Alignment from Spaln_nt2Genome CCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAG atgcagaagtccaatgaggacctaagtcaggctacttggtgtctccttagCTGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTCAAGTTGAGTTCTGACGGACGCCTTATCATACAGGAAGAAAAAGATGGGAATAAGGCAGAGGAAGAAGATGGTACGAGAAgtaagagcaggttcagcgtacgcaagtcatatgtttagctcaagaccatt Alignment from Pairagon CCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAG atgcagaagtccaatgaggacctaagtcaggctacttggtgtctccttagCTGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTCAAGTTGAGTTCTGACGGACGCCTTATCATACAGGAAGAAAAAGATGGGAATAAGGCAGAGGAAGAAGATGGTACGAGAAgtaagagcaggttcagcgtacgcaagtcatatgtttagctcaagaccatt Alignment from Exonerate_protein2genome CCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAG atgcagaagtccaatgaggacctaagtcaggctacttggtgtctccttagCTGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTCAAGTTGAGTTCTGACGGACGCCTTATCATACAGGAAGAAAAAGATGGGAATAAGGCAGAGGAAGAAGATGGTACGAGAAgtaagagcaggttcagcgtacgcaagtcatatgtttagctcaagaccatt Alignment from Exonerate_coding2genome atgcagaagtccaatgaggacctaagtcaggctacttggtgtctccttagctgcccagcctgggccagggcgaggcaagaagcgggaacagggtttcaagttgagttctgacggacgccttatcatacaggaagaaaaagatgggaataaggcagaggaagaagatggtacgagaagtaagagcaggttcagcgtacgcaagtcatatgtttagctcaagaccatt Alignment from GeneWise CCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAG atgcagaagtccaatgaggacctaagtcaggctacttggtgtctccttagCTGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTCAAGTTGAGTTCTGACGGACGCCTTATCATACAGGAAGAAAAAGATGGGAATAAGGCAGAGGAAGAAGATGGTACGAGAAgtaagagcaggttcagcgtacgcaagtcatatgtttagctcaagaccatt #### Rrp12_ID8299_24 --> 2 - 1 Original Alignment acGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAg tggatgcatagtggaggtggttaattctgactgatcactgtttcctgaagatGCTTTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAggtgaggtgaataaatgatcatgcaaattaatcatattgttcctaccatag Alignment from CESAR acGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAg tggatgcatagtggaggtggttaattctgactgatcactgtttcctgaagatGCTTTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAggtgaggtgaataaatgatcatgcaaattaatcatattgttcctaccatag Alignment from Spaln_aa2Genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG tggatgcatagtggaggtggttaattctgactgatcactgtttcctgaagATGCTTTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaggtgaataaatgatcatgcaaattaatcatattgttcctaccatag Alignment from Spaln_nt2Genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG tggatgcatagtggaggtggttaattctgactgatcactgtttcctgaagATGCTTTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaggtgaataaatgatcatgcaaattaatcatattgttcctaccatag Alignment from Pairagon ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG tggatgcatagtggaggtggttaattctgactgatcactgtttcctgaagATGCTTTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaggtgaataaatgatcatgcaaattaatcatattgttcctaccatag Alignment from Exonerate_protein2genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG tggatgcatagtggaggtggttaattctgactgatcactgtttcctgaagATGCTTTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaggtgaataaatgatcatgcaaattaatcatattgttcctaccatag Alignment from Exonerate_coding2genome tggatgcatagtggaggtggttaattctgactgatcactgtttcctgaagatgctttgcaacgttaccttgtgctcatctatcctggccttctgggtgcatttactacagttagttgcagcattctggctctgacccacctcttgtttgagttcaaaggtgaggtgaataaatgatcatgcaaattaatcatattgttcctaccatag Alignment from GeneWise ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG tggatgcatagtggaggtggttaattctgactgatcactgtttcctgaagATGCTTTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaggtgaataaatgatcatgcaaattaatcatattgttcctaccatag #### Rrp12_ID8300_23 --> 0 - 1 Original Alignment GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAg tctatgaccctcaacctcagtcccaattctgatcctccttttgtccttagGTAATCTTATGCACCAAAGAGGTGTCAGTCAGTGCAAGGAAGAGCACATTTATGTTGCTTGTAAAGATGGGACATGCGTTTCTGTGCTTTGGTTCCAACCAAGAGggtgagtagctgattgcccctacgtaaagccaacttattcaccatctggct Alignment from CESAR GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAg tctatgaccctcaacctcagtcccaattctgatcctccttttgtccttagGTAATCTTATGCACCAAAGAGGTGTCAGTCAGTGCAAGGAAGAGCACATTTATGTTGCTTGTAAAGATGGGACATGCGTTTCTGTGCTTTGGTTCCAACCAAGAGggtgagtagctgattgcccctacgtaaagccaacttattcaccatctggct Alignment from Spaln_aa2Genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG tctatgaccctcaacctcagtcccaattctgatcctccttttgtccttagGTAATCTTATGCACCAAAGAGGTGTCAGTCAGTGCAAGGAAGAGCACATTTATGTTGCTTGTAAAGATGGGACATGCGTTTCTGTGCTTTGGTTCCAACCAAGAGGgtgagtagctgattgcccctacgtaaagccaacttattcaccatctggct Alignment from Spaln_nt2Genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG tctatgaccctcaacctcagtcccaattctgatcctccttttgtccttagGTAATCTTATGCACCAAAGAGGTGTCAGTCAGTGCAAGGAAGAGCACATTTATGTTGCTTGTAAAGATGGGACATGCGTTTCTGTGCTTTGGTTCCAACCAAGAGGgtgagtagctgattgcccctacgtaaagccaacttattcaccatctggct Alignment from Pairagon GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG tctatgaccctcaacctcagtcccaattctgatcctccttttgtccttagGTAATCTTATGCACCAAAGAGGTGTCAGTCAGTGCAAGGAAGAGCACATTTATGTTGCTTGTAAAGATGGGACATGCGTTTCTGTGCTTTGGTTCCAACCAAGAGGgtgagtagctgattgcccctacgtaaagccaacttattcaccatctggct Alignment from Exonerate_protein2genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG tctatgaccctcaacctcagtcccaattctgatcctccttttgtccttagGTAATCTTATGCACCAAAGAGGTGTCAGTCAGTGCAAGGAAGAGCACATTTATGTTGCTTGTAAAGATGGGACATGCGTTTCTGTGCTTTGGTTCCAACCAAGAGGgtgagtagctgattgcccctacgtaaagccaacttattcaccatctggct Alignment from Exonerate_coding2genome tctatgaccctcaacctcagtcccaattctgatcctccttttgtccttaggtaatcttatgcaccaaagaggtgtcagtcagtgcaaggaagagcacatttatgttgcttgtaaagatgggacatgcgtttctgtgctttggttccaaccaagagggtgagtagctgattgcccctacgtaaagccaacttattcaccatctggct Alignment from GeneWise GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG tctatgaccctcaacctcagtcccaattctgatcctccttttgtccttagGTAATCTTATGCACCAAAGAGGTGTCAGTCAGTGCAAGGAAGAGCACATTTATGTTGCTTGTAAAGATGGGACATGCGTTTCTGTGCTTTGGTTCCAACCAAGAGGgtgagtagctgattgcccctacgtaaagccaacttattcaccatctggct #### Rrp12_ID8302_21 --> 0 - 0 Original Alignment AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tcctaacacttgagcctgatattacatgaccccggcctcttcacacacagAGCAAAGCGCATGGAATACAGAAAAAGGCTTTTCGGATATTGGAGGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTACAAAGCCATCGTGATGATCTGAAGAAAACCCTCCTGGACTCACTTCGGACAACATCATCCCCAGCAAAAAGGgtaattgctctaacttgatccaccaagtacaagtgatgttgtgtgcaagc Alignment from CESAR AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tcctaacacttgagcctgatattacatgaccccggcctcttcacacacagAGCAAAGCGCATGGAATACAGAAAAAGGCTTTTCGGATATTGGAGGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTACAAAGCCATCGTGATGATCTGAAGAAAACCCTCCTGGACTCACTTCGGACAACATCATCCCCAGCAAAAAGGgtaattgctctaacttgatccaccaagtacaagtgatgttgtgtgcaagc Alignment from Spaln_aa2Genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tcctaacacttgagcctgatattacatgaccccggcctcttcacacacagAGCAAAGCGCATGGAATACAGAAAAAGGCTTTTCGGATATTGGAGGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTACAAAGCCATCGTGATGATCTGAAGAAAACCCTCCTGGACTCACTTCGGACAACATCATCCCCAGCAAAAAGGgtaattgctctaacttgatccaccaagtacaagtgatgttgtgtgcaagc Alignment from Spaln_nt2Genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tcctaacacttgagcctgatattacatgaccccggcctcttcacacacagAGCAAAGCGCATGGAATACAGAAAAAGGCTTTTCGGATATTGGAGGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTACAAAGCCATCGTGATGATCTGAAGAAAACCCTCCTGGACTCACTTCGGACAACATCATCCCCAGCAAAAAGGgtaattgctctaacttgatccaccaagtacaagtgatgttgtgtgcaagc Alignment from Pairagon AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tcctaacacttgagcctgatattacatgaccccggcctcttcacacacagAGCAAAGCGCATGGAATACAGAAAAAGGCTTTTCGGATATTGGAGGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTACAAAGCCATCGTGATGATCTGAAGAAAACCCTCCTGGACTCACTTCGGACAACATCATCCCCAGCAAAAAGGgtaattgctctaacttgatccaccaagtacaagtgatgttgtgtgcaagc Alignment from Exonerate_protein2genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tcctaacacttgagcctgatattacatgaccccggcctcttcacacacagAGCAAAGCGCATGGAATACAGAAAAAGGCTTTTCGGATATTGGAGGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTACAAAGCCATCGTGATGATCTGAAGAAAACCCTCCTGGACTCACTTCGGACAACATCATCCCCAGCAAAAAGGgtaattgctctaacttgatccaccaagtacaagtgatgttgtgtgcaagc Alignment from Exonerate_coding2genome tcctaacacttgagcctgatattacatgaccccggcctcttcacacacagagcaaagcgcatggaatacagaaaaaggcttttcggatattggaggaagtttgtgacagctctcagggcccagcagctcacttattacaaagccatcgtgatgatctgaagaaaaccctcctggactcacttcggacaacatcatccccagcaaaaagggtaattgctctaacttgatccaccaagtacaagtgatgttgtgtgcaagc Alignment from GeneWise AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tcctaacacttgagcctgatattacatgaccccggcctcttcacacacagAGCAAAGCGCATGGAATACAGAAAAAGGCTTTTCGGATATTGGAGGAAGTTTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTATTACAAAGCCATCGTGATGATCTGAAGAAAACCCTCCTGGACTCACTTCGGACAACATCATCCCCAGCAAAAAGGgtaattgctctaacttgatccaccaagtacaagtgatgttgtgtgcaagc #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGG---CAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatccgctatatgactttcccacctgaccctaggtagtttttcattacagagGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCATTGCCAATCCTCTTTAACTTATATGGGCAACAACAAGTTGCAGCTGGGGCGACAGCT---CCCCATCGTACA---GTCGAG---ATTAAGAGCTACCTCAGTGTAACTGAATCACAGgttagtaatgcgtactgtggagaacttttaggaatatatctatatcaatt Alignment from CESAR agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAG---CCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatccgctatatgactttcccacctgaccctaggtagtttttcattacagagGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCATTGCCAATCCTCTTTAACTTATATGGGCAACAACAAGTTGCAGCTGGG---GCGACAGCTCCCCATCGTACAGTC---GAG---ATTAAGAGCTACCTCAGTGTAACTGAATCACAGgttagtaatgcgtactgtggagaacttttaggaatatatctatatcaatt Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatccgctatatgactttcccacctgaccctaggtagtttttcattacagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCATTGCCAATCCTCTTTAACTTATATGGGCAACAACAAGTTGCAGCTGGGGCGACAGCTCCCCATCGTACAGTC------GAGATTAAGAGCTACCTCAGTGTAACTGAATCACAGgttagtaatgcgtactgtggagaacttttaggaatatatctatatcaatt Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCT---GTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatccgctatatgactttcccacctgaccctaggtagtttttcattacagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCATTGCCAATCCTCTTTAACTTATATGGGCAACAACAAGTTGCAGCTGG---GGCGACAGCTCCCCATCGTACAGTCGAG------ATTAAGAGCTACCTCAGTGTAACTGAATCACAGgttagtaatgcgtactgtggagaacttttaggaatatatctatatcaatt Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGG---CAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATC--------------AAAACTTACCTCACCATAACTGAGGCTCAG gatccgctatatgactttcccacctgaccctaggtagtttttcattacagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCATTGCCAATCCTCTTTAACTTATATGGGCAACAACAAGTTGCAGCTGG---GGCGACAGCTCC--------------------CCATCGTACAGTCGAGATTAAGAGCTACCTCAGTGTAACTGAATCACAGgttagtaatgcgtactgtggagaacttttaggaatatatctatatcaatt Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatccgctatatgactttcccacctgaccctaggtagtttttcattacagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCATTGCCAATCCTCTTTAACTTATATGGGCAACAACAAGTTGCAGCTGGGGCGACAGCTCCCCATCGTACAGTC------GAGATTAAGAGCTACCTCAGTGTAACTGAATCACAGgttagtaatgcgtactgtggagaacttttaggaatatatctatatcaatt Alignment from Exonerate_coding2genome gatccgctatatgactttcccacctgaccctaggtagtttttcattacagaggcagaccgggctgatgtgagttgttttgctacaaactcattgccaatcctctttaacttatatgggcaacaacaagttgcagctggggcgacagctccccatcgtacagtcgagattaagagctacctcagtgtaactgaatcacaggttagtaatgcgtactgtggagaacttttaggaatatatctatatcaatt Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatccgctatatgactttcccacctgaccctaggtagtttttcattacagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCATTGCCAATCCTCTTTAACTTATATGGGCAACAACAAGTTGCAGCTGGGGCGACAGCTCCCCATCGTACAGTC------GAGATTAAGAGCTACCTCAGTGTAACTGAATCACAGgttagtaatgcgtactgtggagaacttttaggaatatatctatatcaatt #### Rrp12_ID8318_5 --> 1 - 0 Original Alignment gGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG caaagggtccatacttgcttcattttcaccttgcccttttgtttcctcaggGTTCCACGTCCTGTACTGATGAAGAAGTTCTCAGAAACCTCCAAGGCTTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCACTTCTCTCTGTTGGgtgagtttgtatacttgtattaccaatagtaatagtcaaaagacaggcac Alignment from CESAR gGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG caaagggtccatacttgcttcattttcaccttgcccttttgtttcctcaggGTTCCACGTCCTGTACTGATGAAGAAGTTCTCAGAAACCTCCAAGGCTTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCACTTCTCTCTGTTGGgtgagtttgtatacttgtattaccaatagtaatagtcaaaagacaggcac Alignment from Spaln_aa2Genome GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG caaagggtccatacttgcttcattttcaccttgcccttttgtttcctcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCAGAAACCTCCAAGGCTTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCACTTCTCTCTGTTGGgtgagtttgtatacttgtattaccaatagtaatagtcaaaagacaggcac Alignment from Spaln_nt2Genome GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG caaagggtccatacttgcttcattttcaccttgcccttttgtttcctcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCAGAAACCTCCAAGGCTTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCACTTCTCTCTGTTGGgtgagtttgtatacttgtattaccaatagtaatagtcaaaagacaggcac Alignment from Pairagon GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG caaagggtccatacttgcttcattttcaccttgcccttttgtttcctcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCAGAAACCTCCAAGGCTTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCACTTCTCTCTGTTGGgtgagtttgtatacttgtattaccaatagtaatagtcaaaagacaggcac Alignment from Exonerate_protein2genome GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG caaagggtccatacttgcttcattttcaccttgcccttttgtttcctcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCAGAAACCTCCAAGGCTTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCACTTCTCTCTGTTGGgtgagtttgtatacttgtattaccaatagtaatagtcaaaagacaggcac Alignment from Exonerate_coding2genome GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG caaagggtccatacttgcttcattttcaccttgcccttttgtttcctcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCAGAAACCTCCAAGGCTTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCACTTCTCTCTGTTGGgtgagtttgtatacttgtattaccaatagtaatagtcaaaagacaggcac Alignment from GeneWise GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG caaagggtccatacttgcttcattttcaccttgcccttttgtttcctcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCAGAAACCTCCAAGGCTTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCACTTCTCTCTGTTGGgtgagtttgtatacttgtattaccaatagtaatagtcaaaagacaggcac #### Rrp12_ID8321_2 --> 2 - 0 Original Alignment gaAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG cacatctacgtaatggttcccactcagttccgtgtgtttgtgttttccagggATGAGTGATCTAACTGTTGATGCGGTGAAGCTACATAATGAACTTCAGTTGAGAACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAGCAAGTATGGATCAAGACCCAGAA---GCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGACTGCACAAATGTGACATTTGGTGAGGCTCAATGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtaggtttaaaccatgccatcttcagcatgcatcaaggcacatggagtcc Alignment from CESAR gaAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG cacatctacgtaatggttcccactcagttccgtgtgtttgtgttttccagggATGAGTGATCTAACTGTTGATGCGGTGAAGCTACATAATGAACTTCAGTTGAGAACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAGCAAGTATGGATCAAGACCCAGAA---GCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGACTGCACAAATGTGACATTTGGTGAGGCTCAATGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtaggtttaaaccatgccatcttcagcatgcatcaaggcacatggagtcc Alignment from Spaln_aa2Genome GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG cacatctacgtaatggttcccactcagttccgtgtgtttgtgttttccagGGATGAGTGATCTAACTGTTGATGCGGTGAAGCTACATAATGAACTTCAGTTGAGAACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAGCAAGTATGGATCAAGACCCAGAA---GCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGACTGCACAAATGTGACATTTGGTGAGGCTCAATGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtaggtttaaaccatgccatcttcagcatgcatcaaggcacatggagtcc Alignment from Spaln_nt2Genome GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG cacatctacgtaatggttcccactcagttccgtgtgtttgtgttttccagGGATGAGTGATCTAACTGTTGATGCGGTGAAGCTACATAATGAACTTCAGTTGAGAACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAGCAAGTATGGATCAAGACCCAGA---AGCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGACTGCACAAATGTGACATTTGGTGAGGCTCAATGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtaggtttaaaccatgccatcttcagcatgcatcaaggcacatggagtcc Alignment from Pairagon GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG cacatctacgtaatggttcccactcagttccgtgtgtttgtgttttccagGGATGAGTGATCTAACTGTTGATGCGGTGAAGCTACATAATGAACTTCAGTTGAGAACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAGCAAGTATGGATCAAGACCCAGA---AGCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGACTGCACAAATGTGACATTTGGTGAGGCTCAATGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtaggtttaaaccatgccatcttcagcatgcatcaaggcacatggagtcc Alignment from Exonerate_protein2genome GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG cacatctacgtaatggttcccactcagttccgtgtgtttgtgttttccagGGATGAGTGATCTAACTGTTGATGCGGTGAAGCTACATAATGAACTTCAGTTGAGAACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAGCAAGTATGGATCAAGACCCAGAA---GCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGACTGCACAAATGTGACATTTGGTGAGGCTCAATGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtaggtttaaaccatgccatcttcagcatgcatcaaggcacatggagtcc Alignment from Exonerate_coding2genome cacatctacgtaatggttcccactcagttccgtgtgtttgtgttttccagggatgagtgatctaactgttgatgcggtgaagctacataatgaacttcagttgagaactctgtgcctgggtaaaagtcaagctgctgaagcaagtatggatcaagacccagaagctttcactgagaagtcttcaggcatgtttttgagtggcttatctgactgcacaaatgtgacatttggtgaggctcaatgcttttgggagtcaaatgcagttgctcgcaaaaaggtaggtttaaaccatgccatcttcagcatgcatcaaggcacatggagtcc Alignment from GeneWise GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG cacatctacgtaatggttcccactcagttccgtgtgtttgtgttttccagGGATGAGTGATCTAACTGTTGATGCGGTGAAGCTACATAATGAACTTCAGTTGAGAACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAGCAAGTATGGATCAAGACCCAGAA---GCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGACTGCACAAATGTGACATTTGGTGAGGCTCAATGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtaggtttaaaccatgccatcttcagcatgcatcaaggcacatggagtcc #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from Pairagon GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccatgtctagagggcccctgtaccctctgacttcccctgatctccctagGCTTTCCGGCAACTGTCCCACCGGTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcaggagccattggctagtctgtatttcagtgaaatctgatatgc #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAG---GCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACT---------CGAGTAGAGAACATGGACATCAGTGATGAAg agatggagaaattcaaaggacatagtttaagaagtgcttttctgttttagaCTTCAGGGACAGGGAAGGCATCAAGTTACC------AAGGAGGAGACAACACTTGAAGATGAGGGGAAGGATCTCGTTGCCAAGCCACCTCCATCGGATGACACTCGAGTCATTCAAGTC------ATGGACATCAGTGATGAAggtatgttattgctgagtggggatccatggtgaatctgcaggcaggtctaa Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAg agatggagaaattcaaaggacatagtttaagaagtgcttttctgttttagaCTTCAGGGACAGGGAAGGCATCAAGTTACCAAG---GAGGAGACAACACTTGAAGATGAGGGGAAGGATCTCGTTGCCAAGCCACCTCCATCGGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAggtatgttattgctgagtggggatccatggtgaatctgcaggcaggtctaa Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAG agatggagaaattcaaaggacatagtttaagaagtgcttttctgttttagACTTCAGGGACAGGGAAGGCATCAAGTTACCAAG---GAGGAGACAACACTTGAAGATGAGGGGAAGGATCTCGTTGCCAAGCCACCTCCATCGGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAGgtatgttattgctgagtggggatccatggtgaatctgcaggcaggtctaa Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGT-AGAGAA--CATGGACATCAGTGATGAAG agatggagaaattcaaaggacatagtttaagaagtgcttttctgttttagACTTCAGGGACAGGGAAGGCATCAAGTTACCAA---GGAGGAGACAACACTTGAAGATGAGGGGAAGGATCTCGTTGCCAAGCCACCTCCATCGGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAGgtatgttattgctgagtggggatccatggtgaatctgcaggcaggtctaa Alignment from Pairagon GGACTTTGGATCCAGGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGG------------------AGGAGG------CCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGT------AGAGAACATGGACATCAGTGATGAAG agatggagaaattcaaaggacatagtttaagaagtgcttttctgttttagacttcagGGAC-------------------------------------------------AGGGAAGGCATCAAGTTACCAAGGAGGAGACAACACTTGAAGATGAGGGGAAGGATCTCGTTGCCAAGCCACCTCCATCGGATGACACTCGAGTCATTCAAG---TCATGGACATCAGTGATGAAGgtatgttattgctgagtggggatccatggtgaatctgcaggcaggtctaa Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAG agatggagaaattcaaaggacatagtttaagaagtgcttttctgttttagACTTCAGGGACAGGGAAGGCATCAAGTTACCAAG---GAGGAGACAACACTTGAAGATGAGGGGAAGGATCTCGTTGCCAAGCCACCTCCATCGGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAGgtatgttattgctgagtggggatccatggtgaatctgcaggcaggtctaa Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAG agatggagaaattcaaaggacatagtttaagaagtgcttttctgttttagACTTCAGGGACAGGGAAGGCATCAAGTTACCAAG---GAGGAGACAACACTTGAAGATGAGGGGAAGGATCTCGTTGCCAAGCCACCTCCATCGGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAGgtatgttattgctgagtggggatccatggtgaatctgcaggcaggtctaa Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAG agatggagaaattcaaaggacatagtttaagaagtgcttttctgttttagACTTCAGGGACAGGGAAGGCATCAAGTTACCAAG---GAGGAGACAACACTTGAAGATGAGGGGAAGGATCTCGTTGCCAAGCCACCTCCATCGGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAGgtatgttattgctgagtggggatccatggtgaatctgcaggcaggtctaa #### Sart1_ID965_10 --> 0 - 2 Original Alignment GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag aggggatgctagcaacttgggaggctcgggacacggcccgtctcttccagGTGACCTTCAAAAAGTCCAAGTGGAGGGTCAAAAAAACCAGGAAGAAGGAGCAAGAGGTGATAATGCAGGCTGATGATTTACTGCCTCTGGGAGATCAGACACAGGATGGG---TTCGGGTCAaggtaaggacaagcgtggtaagcacaagatggagaaattcaaaggacatagt Alignment from CESAR GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag aggggatgctagcaacttgggaggctcgggacacggcccgtctcttccagGTGACCTTCAAAAAGTCCAAGTGGAGGGTCAAAAAAACCAGGAAGAAGGAGCAAGAGGTGATAATGCAGGCTGATGATTTACTGCCTCTGGGAGATCAGACACAGGATGGG---TTCGGGTCAaggtaaggacaagcgtggtaagcacaagatggagaaattcaaaggacatagt Alignment from Spaln_aa2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG aggggatgctagcaacttgggaggctcgggacacggcccgtctcttccagGTGACCTTCAAAAAGTCCAAGTGGAGGGTCAAAAAAACCAGGAAGAAGGAGCAAGAGGTGATAATGCAGGCTGATGATTTACTGCCTCTGGGAGATCAGACACAGGATGGG---TTCGGGTCAAGgtaaggacaagcgtggtaagcacaagatggagaaattcaaaggacatagt Alignment from Spaln_nt2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG aggggatgctagcaacttgggaggctcgggacacggcccgtctcttccagGTGACCTTCAAAAAGTCCAAGTGGAGGGTCAAAAAAACCAGGAAGAAGGAGCAAGAGGTGATAATGCAGGCTGATGATTTACTGCCTCTGGGAGATCAGACACAGGATGGG---TTCGGGTCAAGgtaaggacaagcgtggtaagcacaagatggagaaattcaaaggacatagt Alignment from Pairagon GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGG aggggatgctagcaacttgggaggctcgggacacggcccgtctcttccagGTGACCTTCAAAAAGTCCAAGTGGAGGGTCAAAAAAACCAGGAAGAAGGAGCAAGAGGTGATAATGCAGGCTGATGATTTACTGCCTCTGGGAGATCAGACACAGGATGGgttcgggtcaaggtaaggacaagcgtggtaagcacaagatggagaaattcaaaggacatagt Alignment from Exonerate_protein2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG aggggatgctagcaacttgggaggctcgggacacggcccgtctcttccagGTGACCTTCAAAAAGTCCAAGTGGAGGGTCAAAAAAACCAGGAAGAAGGAGCAAGAGGTGATAATGCAGGCTGATGATTTACTGCCTCTGGGAGATCAGACACAGGATGGG---TTCGGGTCAAGgtaaggacaagcgtggtaagcacaagatggagaaattcaaaggacatagt Alignment from Exonerate_coding2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG aggggatgctagcaacttgggaggctcgggacacggcccgtctcttccagGTGACCTTCAAAAAGTCCAAGTGGAGGGTCAAAAAAACCAGGAAGAAGGAGCAAGAGGTGATAATGCAGGCTGATGATTTACTGCCTCTGGGAGATCAGACACAGGATGGG---TTCGGGTCAAGgtaaggacaagcgtggtaagcacaagatggagaaattcaaaggacatagt Alignment from GeneWise GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG aggggatgctagcaacttgggaggctcgggacacggcccgtctcttccagGTGACCTTCAAAAAGTCCAAGTGGAGGGTCAAAAAAACCAGGAAGAAGGAGCAAGAGGTGATAATGCAGGCTGATGATTTACTGCCTCTGGGAGATCAGACACAGGATGGG---TTCGGGTCAAGgtaaggacaagcgtggtaagcacaagatggagaaattcaaaggacatagt #### Scd3_ID8976_5 --> 1 - 1 Original Alignment gTACTACAAGCCTGGCATT---------------------------------CTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGg ccctctgacaacaactaatcaatctcaattcctctttttctttcctcaagaTGCTACAAGCCTGGGATTTTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTACACATTGGTGCCGTGGTACTGTTGGTGCAGGGCTTTCCTTACAACCTTTTATGTTACCCCTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTATGGTACCAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGggtatggacaaatcacagcttgcattgtgcattgagaagactcagttcttc Alignment from CESAR gTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACG---------------------------------CTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGg ccctctgacaacaactaatcaatctcaattcctctttttctttcctcaagaTGCTACAAGCCTGGGATTTTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTACACATTGGTGCCGTGGTACTGTTGGTGCAGGGCTTTCCTTACAACCTTTTATGTTACCCCTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTATGGTACCAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGggtatggacaaatcacagcttgcattgtgcattgagaagactcagttcttc Alignment from Spaln_aa2Genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATC---------------------------------CTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccctctgacaacaactaatcaatctcaattcctctttttctttcctcaagATGCTACAAGCCTGGGATTTTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTACACATTGGTGCCGTGGTACTGTTGGTGCAGGGCTTTCCTTACAACCTTTTATGTTACCCCTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTATGGTACCAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtatggacaaatcacagcttgcattgtgcattgagaagactcagttcttc Alignment from Spaln_nt2Genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGA GACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccctctgacaacaactaatcaatctcaattcctctttttctttcctcaagATGCTACAAGCCTGGGATTTTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTgtacacattggtgccgtggtactgttggtgcagGGCTTTCCTTACAACCTTTTATGTTACCCCTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTATGGTACCAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtatggacaaatcacagcttgcattgtgcattgagaagactcagttcttc Alignment from Pairagon GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCC---------------------------------CACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccctctgacaacaactaatcaatctcaattcctctttttctttcctcaagATGCTACAAGCCTGGGATTTTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTACACATTGGTGCCGTGGTACTGTTGGTGCAGGGCTTTCCTTACAACCTTTTATGTTACCCCTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTATGGTACCAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtatggacaaatcacagcttgcattgtgcattgagaagactcagttcttc Alignment from Exonerate_protein2genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTG GTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccctctgacaacaactaatcaatctcaattcctctttttctttcctcaagATGCTACAAGCCTGGGATTTTGTTGATGTGCTTCATTCTCTCTACATTGgtgctgttgatgtgtttcattctgtacacattgGTGCCGTGGTACTGTTGGTGCAGGGCTTTCCTTACAACCTTTTATGTTACCCCTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTATGGTACCAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtatggacaaatcacagcttgcattgtgcattgagaagactcagttcttc Alignment from Exonerate_coding2genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGG ccctctgacaacaactaatcaatctcaattcctctttttctttcctcaagATGCTACAAGCCTGGGATTTTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCattctgtacacattggtgccgtggtactgttggtgcagggctttccttacaaccttttatgttacccctttgctgaggtatgcaatagtgctaaatgcaacttggcttgtgaacagtgcagcacatgtgtacagatattgcccttatggtaccaatattgatccatgtcataatgcactaattttgggatgtatgggtatggacaaatcacagcttgcattgtgcattgagaagactcagttcttc Alignment from GeneWise GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCC---------------------------------ACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccctctgacaacaactaatcaatctcaattcctctttttctttcctcaagATGCTACAAGCCTGGGATTTTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTACACATTGGTGCCGTGGTACTGTTGGTGCAGGGCTTTCCTTACAACCTTTTATGTTACCCCTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTATGGTACCAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtatggacaaatcacagcttgcattgtgcattgagaagactcagttcttc #### Scd4_ID8996_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag ctaaaccagagtcagaggacatagatagcttgctactgtctctacttcagAATGATGCATATGAATGGGCACATGAACATAGGGCCCAACACAAGTTTTCGGAGACCCATGCTGATCCCCACAATTCTCGACACGGCTTCTTCTTCCCTCACGTGGGTTGGCTACCTGTGCGTAAACACCCAGCAATCGAAGAGAAGGGAAAGAACCTGGAGATGTCTGACCTCAGAGCTGAGAAGCTCGTTATGTTCCGAAGGaggtaggtagcaaaatggacagggtgacgactaagccatgctagtgcctttc Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag ctaaaccagagtcagaggacatagatagcttgctactgtctctacttcagAATGATGCATATGAATGGGCACATGAACATAGGGCCCAACACAAGTTTTCGGAGACCCATGCTGATCCCCACAATTCTCGACACGGCTTCTTCTTCCCTCACGTGGGTTGGCTACCTGTGCGTAAACACCCAGCAATCGAAGAGAAGGGAAAGAACCTGGAGATGTCTGACCTCAGAGCTGAGAAGCTCGTTATGTTCCGAAGGaggtaggtagcaaaatggacagggtgacgactaagccatgctagtgcctttc Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ctaaaccagagtcagaggacatagatagcttgctactgtctctacttcagAATGATGCATATGAATGGGCACATGAACATAGGGCCCAACACAAGTTTTCGGAGACCCATGCTGATCCCCACAATTCTCGACACGGCTTCTTCTTCCCTCACGTGGGTTGGCTACCTGTGCGTAAACACCCAGCAATCGAAGAGAAGGGAAAGAACCTGGAGATGTCTGACCTCAGAGCTGAGAAGCTCGTTATGTTCCGAAGGAGgtaggtagcaaaatggacagggtgacgactaagccatgctagtgcctttc Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ctaaaccagagtcagaggacatagatagcttgctactgtctctacttcagAATGATGCATATGAATGGGCACATGAACATAGGGCCCAACACAAGTTTTCGGAGACCCATGCTGATCCCCACAATTCTCGACACGGCTTCTTCTTCCCTCACGTGGGTTGGCTACCTGTGCGTAAACACCCAGCAATCGAAGAGAAGGGAAAGAACCTGGAGATGTCTGACCTCAGAGCTGAGAAGCTCGTTATGTTCCGAAGGAGgtaggtagcaaaatggacagggtgacgactaagccatgctagtgcctttc Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ctaaaccagagtcagaggacatagatagcttgctactgtctctacttcagAATGATGCATATGAATGGGCACATGAACATAGGGCCCAACACAAGTTTTCGGAGACCCATGCTGATCCCCACAATTCTCGACACGGCTTCTTCTTCCCTCACGTGGGTTGGCTACCTGTGCGTAAACACCCAGCAATCGAAGAGAAGGGAAAGAACCTGGAGATGTCTGACCTCAGAGCTGAGAAGCTCGTTATGTTCCGAAGGAGgtaggtagcaaaatggacagggtgacgactaagccatgctagtgcctttc Alignment from Exonerate_protein2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ctaaaccagagtcagaggacatagatagcttgctactgtctctacttcagAATGATGCATATGAATGGGCACATGAACATAGGGCCCAACACAAGTTTTCGGAGACCCATGCTGATCCCCACAATTCTCGACACGGCTTCTTCTTCCCTCACGTGGGTTGGCTACCTGTGCGTAAACACCCAGCAATCGAAGAGAAGGGAAAGAACCTGGAGATGTCTGACCTCAGAGCTGAGAAGCTCGTTATGTTCCGAAGGAGgtaggtagcaaaatggacagggtgacgactaagccatgctagtgcctttc Alignment from Exonerate_coding2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ctaaaccagagtcagaggacatagatagcttgctactgtctctacttcagAATGATGCATATGAATGGGCACATGAACATAGGGCCCAACACAAGTTTTCGGAGACCCATGCTGATCCCCACAATTCTCGACACGGCTTCTTCTTCCCTCACGTGGGTTGGCTACCTGTGCGTAAACACCCAGCAATCGAAGAGAAGGGAAAGAACCTGGAGATGTCTGACCTCAGAGCTGAGAAGCTCGTTATGTTCCGAAGGAGgtaggtagcaaaatggacagggtgacgactaagccatgctagtgcctttc Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ctaaaccagagtcagaggacatagatagcttgctactgtctctacttcagAATGATGCATATGAATGGGCACATGAACATAGGGCCCAACACAAGTTTTCGGAGACCCATGCTGATCCCCACAATTCTCGACACGGCTTCTTCTTCCCTCACGTGGGTTGGCTACCTGTGCGTAAACACCCAGCAATCGAAGAGAAGGGAAAGAACCTGGAGATGTCTGACCTCAGAGCTGAGAAGCTCGTTATGTTCCGAAGGAGgtaggtagcaaaatggacagggtgacgactaagccatgctagtgcctttc #### Sdhaf2_ID2856_2 --> 0 - 2 Original Alignment GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTag cCTGTTTGCTAAA ttgccacatcacgttggttattgacatgtacgttctgctttgctttgtagGCACTATCAAAACACAGTCTGCTCTCACCCTTACCTAGTGTAACATCATTTAGACGTTTCTACAGAGGTGACAGTCCAACAGATTCACAAAAAGACATGATTGAAATCCCTCTGCCCCCATGGCAGGAAAGAACAGATGAGTCTATAGAAACGAAAAGAGCTAGATTACTCTACGAGAGTAGGAAAAGAGGGATGCTGGAAAACTGTGTTCTACTGaggtgagtaagcttggttgggatttttttgtcatcctagcCTGTTTGCCACA Alignment from CESAR GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTag cCTGTTTGCTAAA ttgccacatcacgttggttattgacatgtacgttctgctttgctttgtagGCACTATCAAAACACAGTCTGCTCTCACCCTTACCTAGTGTAACATCATTTAGACGTTTCTACAGAGGTGACAGTCCAACAGATTCACAAAAAGACATGATTGAAATCCCTCTGCCCCCATGGCAGGAAAGAACAGATGAGTCTATAGAAACGAAAAGAGCTAGATTACTCTACGAGAGTAGGAAAAGAGGGATGCTGGAAAACTGTGTTCTACTGaggtgagtaagcttggtgtgttttttcttttgtgcttagcCTGTTTGCCACA Alignment from Spaln_aa2Genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG CCTGTTTGCTAAA ttgccacatcacgttggttattgacatgtacgttctgctttgctttgtagGCACTATCAAAACACAGTCTGCTCTCACCCTTACCTAGTGTAACATCATTTAGACGTTTCTACAGAGGTGACAGTCCAACAGATTCACAAAAAGACATGATTGAAATCCCTCTGCCCCCATGGCAGGAAAGAACAGATGAGTCTATAGAAACGAAAAGAGCTAGATTACTCTACGAGAGTAGGAAAAGAGGGATGCTGGAAAACTGTGTTCTACTGAGgtgagtaagcttggttgggatttttttgtcatcctagCCTGTTTGCCACA Alignment from Spaln_nt2Genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG CCTGTTTGCTAAA ttgccacatcacgttggttattgacatgtacgttctgctttgctttgtagGCACTATCAAAACACAGTCTGCTCTCACCCTTACCTAGTGTAACATCATTTAGACGTTTCTACAGAGGTGACAGTCCAACAGATTCACAAAAAGACATGATTGAAATCCCTCTGCCCCCATGGCAGGAAAGAACAGATGAGTCTATAGAAACGAAAAGAGCTAGATTACTCTACGAGAGTAGGAAAAGAGGGATGCTGGAAAACTGTGTTCTACTGAGgtgagtaagcttggttgggatttttttgtcatcctagCCTGTTTGCCACA Alignment from Pairagon GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG CCTGTTTGCTAAA ttgccacatcacgttggttattgacatgtacgttctgctttgctttgtagGCACTATCAAAACACAGTCTGCTCTCACCCTTACCTAGTGTAACATCATTTAGACGTTTCTACAGAGGTGACAGTCCAACAGATTCACAAAAAGACATGATTGAAATCCCTCTGCCCCCATGGCAGGAAAGAACAGATGAGTCTATAGAAACGAAAAGAGCTAGATTACTCTACGAGAGTAGGAAAAGAGGGATGCTGGAAAACTGTGTTCTACTGAGgtgagtaagcttggttgggatttttttgtcatcctagCCTGTTTGCCACA Alignment from Exonerate_protein2genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG CCTGTTTGCTAAA ttgccacatcacgttggttattgacatgtacgttctgctttgctttgtagGCACTATCAAAACACAGTCTGCTCTCACCCTTACCTAGTGTAACATCATTTAGACGTTTCTACAGAGGTGACAGTCCAACAGATTCACAAAAAGACATGATTGAAATCCCTCTGCCCCCATGGCAGGAAAGAACAGATGAGTCTATAGAAACGAAAAGAGCTAGATTACTCTACGAGAGTAGGAAAAGAGGGATGCTGGAAAACTGTGTTCTACTGAGgtgagtaagcttggttgggatttttttgtcatcctagCCTGTTTGCCACA Alignment from Exonerate_coding2genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG CCTGTTTGCTAAA ttgccacatcacgttggttattgacatgtacgttctgctttgctttgtagGCACTATCAAAACACAGTCTGCTCTCACCCTTACCTAGTGTAACATCATTTAGACGTTTCTACAGAGGTGACAGTCCAACAGATTCACAAAAAGACATGATTGAAATCCCTCTGCCCCCATGGCAGGAAAGAACAGATGAGTCTATAGAAACGAAAAGAGCTAGATTACTCTACGAGAGTAGGAAAAGAGGGATGCTGGAAAACTGTGTTCTACTGAGgtgagtaagcttggttgggatttttttgtcatcctagCCTGTTTGCCACA Alignment from GeneWise GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG CCTGTTTGCTAAA ttgccacatcacgttggttattgacatgtacgttctgctttgctttgtagGCACTATCAAAACACAGTCTGCTCTCACCCTTACCTAGTGTAACATCATTTAGACGTTTCTACAGAGGTGACAGTCCAACAGATTCACAAAAAGACATGATTGAAATCCCTCTGCCCCCATGGCAGGAAAGAACAGATGAGTCTATAGAAACGAAAAGAGCTAGATTACTCTACGAGAGTAGGAAAAGAGGGATGCTGGAAAACTGTGTTCTACTGAGgtgagtaagcttggttgggatttttttgtcatcctagCCTGTTTGCCACA #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagggCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGGGCAATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagggCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGGGCAATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagGGCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGGGCAATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagGGCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGGGCAATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagGGCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGGGCAATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagGGCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGGGCAATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from Exonerate_coding2genome cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagggcctcaggactcatggaaagttacaccaggctctgagggcaatcttcaaaggaagaaagtgccagcctttccataaccatcagcctagtccatccctatgttcttact Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG cattaaagttgtcggtgatgagcaaccaatttattctcctttgcccttagGGCCTCAGGACTCATGGAAAGTTACACCAGGCTCTGAGGGCAATCTTCAAAGGAAGAAAgtgccagcctttccataaccatcagcctagtccatccctatgttcttact #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg cactcttctaatggatcagtccataggtgaccgtgatgttcttcttctagTTCCTAGCCTGCATTATAAAAAAG---AGGAAGGACCTTGTGTGTGCTTTTTGCCTG---AACTGGAGAGACACACTTGCTTTGCTACTAACACATTCAGGTCCTAAAAAGTTTCCAGAACTTTGTggtacagatgagattaatatgattcattgtatttatgccaagcaaggcagc Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg cactcttctaatggatcagtccataggtgaccgtgatgttcttcttctagTTCCTAGCCTGCATTATAAAAAAG---AGGAAGGACCTTGTGTGTGCTTTTTGCCTG---AACTGGAGAGACACACTTGCTTTGCTACTAACACATTCAGGTCCTAAAAAGTTTCCAGAACTTTGTggtacagatgagattaatatgattcattgtatttatgccaagcaaggcagc Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG cactcttctaatggatcagtccataggtgaccgtgatgttcttcttctagTTCCTAGCCTGCATTATAAAAAAG---AGGAAGGACCTTGTGTGTGCTTTTTGCCTG---AACTGGAGAGACACACTTGCTTTGCTACTAACACATTCAGGTCCTAAAAAGTTTCCAGAACTTTGTGgtacagatgagattaatatgattcattgtatttatgccaagcaaggcagc Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG cactcttctaatggatcagtccataggtgaccgtgatgttcttcttctagTTCCTAGCCTGCATTATAAAAAAGA---GGAAGGACCTTGTGTGTGCTTTTTGCCT---GAACTGGAGAGACACACTTGCTTTGCTACTAACACATTCAGGTCCTAAAAAGTTTCCAGAACTTTGTGgtacagatgagattaatatgattcattgtatttatgccaagcaaggcagc Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG cactcttctaatggatcagtccataggtgaccgtgatgttcttcttctagTTCCTAGCCTGCATTATAAAAAAGA---GGAAGGACCTTGTGTGTGCTTTTTGCCT---GAACTGGAGAGACACACTTGCTTTGCTACTAACACATTCAGGTCCTAAAAAGTTTCCAGAACTTTGTGgtacagatgagattaatatgattcattgtatttatgccaagcaaggcagc Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG cactcttctaatggatcagtccataggtgaccgtgatgttcttcttctagTTCCTAGCCTGCATTATAAAAAAGAGG---AAGGACCTTGTGTGTGCTTTTTGCCTG---AACTGGAGAGACACACTTGCTTTGCTACTAACACATTCAGGTCCTAAAAAGTTTCCAGAACTTTGTGgtacagatgagattaatatgattcattgtatttatgccaagcaaggcagc Alignment from Exonerate_coding2genome cactcttctaatggatcagtccataggtgaccgtgatgttcttcttctagttcctagcctgcattataaaaaagaggaaggaccttgtgtgtgctttttgcctgaactggagagacacacttgctttgctactaacacattcaggtcctaaaaagtttccagaactttgtggtacagatgagattaatatgattcattgtatttatgccaagcaaggcagc Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG cactcttctaatggatcagtccataggtgaccgtgatgttcttcttctagTTCCTAGCCTGCATTATAAAAAAGAGG---AAGGACCTTGTGTGTGCTTTTTGCCTG---AACTGGAGAGACACACTTGCTTTGCTACTAACACATTCAGGTCCTAAAAAGTTTCCAGAACTTTGTGgtacagatgagattaatatgattcattgtatttatgccaagcaaggcagc #### Sec31b_ID9038_14 --> 2 - 0 Original Alignment acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagatACTGATGGGCTACTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATGCTGTTATTTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from CESAR acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagatACTGATGGGCTACTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATGCTGTTATTTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Spaln_aa2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATGCTGTTATTTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Spaln_nt2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGCC---CTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATGCTGTTATTTTAGCTCA---TGGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Pairagon ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGCC---CTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATGCTGTTATTTTAGCTCA---TGGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Exonerate_protein2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGC---CCTTTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATGCTGTTATTTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG atacagtaaagtattcactgagcaagtgaccttctctcttctgtccctagATACTGATGGGCTACTAAGCCCT---TTGTTAATTGGGGAACTGCACTCTGCTGTAGATTTGTGTTTGAAGGAAGAGCGGTTTTCAGATGCTGTTATTTTAGCTCAT---GGGGATGCAGAGTGGCTTAAGTGGACCCAAGAGCATTATCTGGCCAAGAGGAGAACAAAAACATCCTCTgtaaggactgttgtccataattgtgttgctcacagccatgtcattcaaca #### Sec31b_ID9040_12 --> 0 - 0 Original Alignment GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG tgcaggcaaccttggtggccagccttctttcccatctcttccctgctcagGTAGCCACCTGCCTAAAAAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCAGTCGACCTCAAAAGTGATAGAGCACATAGCCCTTGTGCTCAGgtaagatgaaagtcttaactatttgcctttcagggccaacatgttcccta Alignment from CESAR GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG tgcaggcaaccttggtggccagccttctttcccatctcttccctgctcagGTAGCCACCTGCCTAAAAAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCAGTCGACCTCAAAAGTGATAGAGCACATAGCCCTTGTGCTCAGgtaagatgaaagtcttaactatttgcctttcagggccaacatgttcccta Alignment from Spaln_aa2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG tgcaggcaaccttggtggccagccttctttcccatctcttccctgctcagGTAGCCACCTGCCTAAAAAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCAGTCGACCTCAAAAGTGATAGAGCACATAGCCCTTGTGCTCAGgtaagatgaaagtcttaactatttgcctttcagggccaacatgttcccta Alignment from Spaln_nt2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG tgcaggcaaccttggtggccagccttctttcccatctcttccctgctcagGTAGCCACCTGCCTAAAAAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCAGTCGACCTCAAAAGTGATAGAGCACATAGCCCTTGTGCTCAGgtaagatgaaagtcttaactatttgcctttcagggccaacatgttcccta Alignment from Pairagon GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG tgcaggcaaccttggtggccagccttctttcccatctcttccctgctcagGTAGCCACCTGCCTAAAAAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCAGTCGACCTCAAAAGTGATAGAGCACATAGCCCTTGTGCTCAGgtaagatgaaagtcttaactatttgcctttcagggccaacatgttcccta Alignment from Exonerate_protein2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG tgcaggcaaccttggtggccagccttctttcccatctcttccctgctcagGTAGCCACCTGCCTAAAAAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCAGTCGACCTCAAAAGTGATAGAGCACATAGCCCTTGTGCTCAGgtaagatgaaagtcttaactatttgcctttcagggccaacatgttcccta Alignment from Exonerate_coding2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG tgcaggcaaccttggtggccagccttctttcccatctcttccctgctcagGTAGCCACCTGCCTAAAAAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCAGTCGACCTCAAAAGTGATAGAGCACATAGCCCTTGTGCTCAGgtaagatgaaagtcttaactatttgcctttcagggccaacatgttcccta Alignment from GeneWise GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG tgcaggcaaccttggtggccagccttctttcccatctcttccctgctcagGTAGCCACCTGCCTAAAAAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCAGTCGACCTCAAAAGTGATAGAGCACATAGCCCTTGTGCTCAGgtaagatgaaagtcttaactatttgcctttcagggccaacatgttcccta #### Sec31b_ID9041_11 --> 0 - 0 Original Alignment GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG agaaagctgttattatttgcagcttggccacgtttctttgtctcttccagGTGACCTTAGAGCAGGATTCTAGGCCAAAATTCTTTGGGCTTTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtgagtatagacccatggaaaataaaattactgctcccaagagccccata Alignment from CESAR GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG agaaagctgttattatttgcagcttggccacgtttctttgtctcttccagGTGACCTTAGAGCAGGATTCTAGGCCAAAATTCTTTGGGCTTTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtgagtatagacccatggaaaataaaattactgctcccaagagccccata Alignment from Spaln_aa2Genome GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG agaaagctgttattatttgcagcttggccacgtttctttgtctcttccagGTGACCTTAGAGCAGGATTCTAGGCCAAAATTCTTTGGGCTTTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtgagtatagacccatggaaaataaaattactgctcccaagagccccata Alignment from Spaln_nt2Genome GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG agaaagctgttattatttgcagcttggccacgtttctttgtctcttccagGTGACCTTAGAGCAGGATTCTAGGCCAAAATTCTTTGGGCTTTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtgagtatagacccatggaaaataaaattactgctcccaagagccccata Alignment from Pairagon GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG agaaagctgttattatttgcagcttggccacgtttctttgtctcttccagGTGACCTTAGAGCAGGATTCTAGGCCAAAATTCTTTGGGCTTTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtgagtatagacccatggaaaataaaattactgctcccaagagccccata Alignment from Exonerate_protein2genome GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG agaaagctgttattatttgcagcttggccacgtttctttgtctcttccagGTGACCTTAGAGCAGGATTCTAGGCCAAAATTCTTTGGGCTTTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtgagtatagacccatggaaaataaaattactgctcccaagagccccata Alignment from Exonerate_coding2genome GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG agaaagctgttattatttgcagcttggccacgtttctttgtctcttccagGTGACCTTAGAGCAGGATTCTAGGCCAAAATTCTTTGGGCTTTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtgagtatagacccatggaaaataaaattactgctcccaagagccccata Alignment from GeneWise GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAGGTGG agaaagctgttattatttgcagcttggccacgtttctttgtctcttccagGTGACCTTAGAGCAGGATTCTAGGCCAAAATTCTTTGGGCTTTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGGTGAgtatagacccatggaaaataaaattactgctcccaagagccccata #### Sec31b_ID9049_3 --> 1 - 0 Original Alignment gTTTCACAAGCTAATATGGGGAAGCTTTGGCAGTGGGCTTCTGGAAAACTCCGGGGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCAGAAACAGAAGCACACTGGAGCTGTCAGAGCCTTGGACTTTAATCCTTTCCAG aatggagcatagaattagagggttcctttcttgattgttttctctgaaagaTTTCATAAATTGATATGGGGAAGCTTTGGGAGTGGTCTCTTGGAGAACTCTGGTGTCATAGCTGGGGGAGGAGACAATGGTGCACTAACTTTATATAAGGTGACTCATGTCCTCTCTTCAGGAAAGGAGCCCCTGATTACCCGGAAACAGAAGCATACTGGGGCTGTCAGAGCCTTGGACTTCAATCCGTTCCAAgtatgtccttttataaactgaactcccaacaaaaagactccatgcatttg Alignment from CESAR gTTTCACAAGCTAATATGGGGAAGCTTTGGCAGTGGGCTTCTGGAAAACTCCGGGGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCAGAAACAGAAGCACACTGGAGCTGTCAGAGCCTTGGACTTTAATCCTTTCCAG aatggagcatagaattagagggttcctttcttgattgttttctctgaaagaTTTCATAAATTGATATGGGGAAGCTTTGGGAGTGGTCTCTTGGAGAACTCTGGTGTCATAGCTGGGGGAGGAGACAATGGTGCACTAACTTTATATAAGGTGACTCATGTCCTCTCTTCAGGAAAGGAGCCCCTGATTACCCGGAAACAGAAGCATACTGGGGCTGTCAGAGCCTTGGACTTCAATCCGTTCCAAgtatgtccttttataaactgaactcccaacaaaaagactccatgcatttg Alignment from Spaln_aa2Genome GTTTCACAAGCTAATATGGGGAAGCTTTGGCAGTGGGCTTCTGGAAAACTCCGGGGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCAGAAACAGAAGCACACTGGAGCTGTCAGAGCCTTGGACTTTAATCCTTTCCAG aatggagcatagaattagagggttcctttcttgattgttttctctgaaagATTTCATAAATTGATATGGGGAAGCTTTGGGAGTGGTCTCTTGGAGAACTCTGGTGTCATAGCTGGGGGAGGAGACAATGGTGCACTAACTTTATATAAGGTGACTCATGTCCTCTCTTCAGGAAAGGAGCCCCTGATTACCCGGAAACAGAAGCATACTGGGGCTGTCAGAGCCTTGGACTTCAATCCGTTCCAAgtatgtccttttataaactgaactcccaacaaaaagactccatgcatttg Alignment from Spaln_nt2Genome GTTTCACAAGCTAATATGGGGAAGCTTTGGCAGTGGGCTTCTGGAAAACTCCGGGGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCAGAAACAGAAGCACACTGGAGCTGTCAGAGCCTTGGACTTTAATCCTTTCCAG aatggagcatagaattagagggttcctttcttgattgttttctctgaaagATTTCATAAATTGATATGGGGAAGCTTTGGGAGTGGTCTCTTGGAGAACTCTGGTGTCATAGCTGGGGGAGGAGACAATGGTGCACTAACTTTATATAAGGTGACTCATGTCCTCTCTTCAGGAAAGGAGCCCCTGATTACCCGGAAACAGAAGCATACTGGGGCTGTCAGAGCCTTGGACTTCAATCCGTTCCAAgtatgtccttttataaactgaactcccaacaaaaagactccatgcatttg Alignment from Pairagon GTTTCACAAGCTAATATGGGGAAGCTTTGGCAGTGGGCTTCTGGAAAACTCCGGGGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCAGAAACAGAAGCACACTGGAGCTGTCAGAGCCTTGGACTTTAATCCTTTCCAG aatggagcatagaattagagggttcctttcttgattgttttctctgaaagATTTCATAAATTGATATGGGGAAGCTTTGGGAGTGGTCTCTTGGAGAACTCTGGTGTCATAGCTGGGGGAGGAGACAATGGTGCACTAACTTTATATAAGGTGACTCATGTCCTCTCTTCAGGAAAGGAGCCCCTGATTACCCGGAAACAGAAGCATACTGGGGCTGTCAGAGCCTTGGACTTCAATCCGTTCCAAgtatgtccttttataaactgaactcccaacaaaaagactccatgcatttg Alignment from Exonerate_protein2genome GTTTCACAAGCTAATATGGGGAAGCTTTGGCAGTGGGCTTCTGGAAAACTCCGGGGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCAGAAACAGAAGCACACTGGAGCTGTCAGAGCCTTGGACTTTAATCCTTTCCAG aatggagcatagaattagagggttcctttcttgattgttttctctgaaagATTTCATAAATTGATATGGGGAAGCTTTGGGAGTGGTCTCTTGGAGAACTCTGGTGTCATAGCTGGGGGAGGAGACAATGGTGCACTAACTTTATATAAGGTGACTCATGTCCTCTCTTCAGGAAAGGAGCCCCTGATTACCCGGAAACAGAAGCATACTGGGGCTGTCAGAGCCTTGGACTTCAATCCGTTCCAAgtatgtccttttataaactgaactcccaacaaaaagactccatgcatttg Alignment from Exonerate_coding2genome GTTTCACAAGCTAATATGGGGAAGCTTTGGCAGTGGGCTTCTGGAAAACTCCGGGGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCAGAAACAGAAGCACACTGGAGCTGTCAGAGCCTTGGACTTTAATCCTTTCCAG aatggagcatagaattagagggttcctttcttgattgttttctctgaaagATTTCATAAATTGATATGGGGAAGCTTTGGGAGTGGTCTCTTGGAGAACTCTGGTGTCATAGCTGGGGGAGGAGACAATGGTGCACTAACTTTATATAAGGTGACTCATGTCCTCTCTTCAGGAAAGGAGCCCCTGATTACCCGGAAACAGAAGCATACTGGGGCTGTCAGAGCCTTGGACTTCAATCCGTTCCAAgtatgtccttttataaactgaactcccaacaaaaagactccatgcatttg Alignment from GeneWise GTTTCACAAGCTAATATGGGGAAGCTTTGGCAGTGGGCTTCTGGAAAACTCCGGGGTTATTGCTGGTGGAGGAGACAACGGCACACTGACTCTATACAATGTGACCCACGTCCTTTCTTCAGGGAAGGAGCCCCTGATTGCCCAGAAACAGAAGCACACTGGAGCTGTCAGAGCCTTGGACTTTAATCCTTTCCAG aatggagcatagaattagagggttcctttcttgattgttttctctgaaagATTTCATAAATTGATATGGGGAAGCTTTGGGAGTGGTCTCTTGGAGAACTCTGGTGTCATAGCTGGGGGAGGAGACAATGGTGCACTAACTTTATATAAGGTGACTCATGTCCTCTCTTCAGGAAAGGAGCCCCTGATTACCCGGAAACAGAAGCATACTGGGGCTGTCAGAGCCTTGGACTTCAATCCGTTCCAAgtatgtccttttataaactgaactcccaacaaaaagactccatgcatttg #### Sema4g_ID9255_13 --> 1 - 1 Original Alignment gACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAg ttcatcaactggtagtggtattgtaatagaactaaatcccctcatttcagaACAGAACTAATACAAGACATTGAAAGAGGCAATCTAGGCTGTGAGGACAGCCGGGATGCTggtaagcataactgacacctaattgggattctagcccttttagccatgcct Alignment from CESAR gACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAg ttcatcaactggtagtggtattgtaatagaactaaatcccctcatttcagaACAGAACTAATACAAGACATTGAAAGAGGCAATCTAGGCTGTGAGGACAGCCGGGATGCTggtaagcataactgacacctaattgggattctagcccttttagccatgcct Alignment from Spaln_aa2Genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcatcaactggtagtggtattgtaatagaactaaatcccctcatttcagAACAGAACTAATACAAGACATTGAAAGAGGCAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtaagcataactgacacctaattgggattctagcccttttagccatgcct Alignment from Spaln_nt2Genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcatcaactggtagtggtattgtaatagaactaaatcccctcatttcagAACAGAACTAATACAAGACATTGAAAGAGGCAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtaagcataactgacacctaattgggattctagcccttttagccatgcct Alignment from Pairagon GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcatcaactggtagtggtattgtaatagaactaaatcccctcatttcagAACAGAACTAATACAAGACATTGAAAGAGGCAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtaagcataactgacacctaattgggattctagcccttttagccatgcct Alignment from Exonerate_protein2genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcatcaactggtagtggtattgtaatagaactaaatcccctcatttcagAACAGAACTAATACAAGACATTGAAAGAGGCAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtaagcataactgacacctaattgggattctagcccttttagccatgcct Alignment from Exonerate_coding2genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcatcaactggtagtggtattgtaatagaactaaatcccctcatttcagAACAGAACTAATACAAGACATTGAAAGAGGCAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtaagcataactgacacctaattgggattctagcccttttagccatgcct Alignment from GeneWise GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcatcaactggtagtggtattgtaatagaactaaatcccctcatttcagAACAGAACTAATACAAGACATTGAAAGAGGCAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtaagcataactgacacctaattgggattctagcccttttagccatgcct #### Sf1_ID1663_4 --> 1 - 2 Original Alignment gTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACaa gattaatcctatgaaatagtgacaagtcttctcttcttttctgttaacagaTCTCCTTCTTCTGAGCCAAACTACAATAGTGAGGGGAAGTGGCTTAACACTTGTGAGCTCCGCACTCACAAAAAGCTAGGAGAAGAGCAACATACCCTCATTACAGAGATGGTTGGTTTAAACCCTGAC------CCACCTGCAGATTACatgtagtgaaatggcttattccacagggctcatctgtttccctctctctttg Alignment from CESAR gTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACaa gattaatcctatgaaatagtgacaagtcttctcttcttttctgttaacagaTCTCCTTCTTCTGAGCCAAACTACAATAGTGAGGGGAAGTGGCTTAACACTTGTGAGCTCCGCACTCACAAAAAGCTAGGAGAAGAGCAACATACCCTCATTACAGAGATGGTTGGTTTAAACCCTGAC------CCACCTGCAGATTACatgtagtgaaatggcttattccacagggctcatctgtttccctctctctttg Alignment from Spaln_aa2Genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA gattaatcctatgaaatagtgacaagtcttctcttcttttctgttaacagATCTCCTTCTTCTGAGCCAAACTACAATAGTGAGGGGAAGTGGCTTAACACTTGTGAGCTCCGCACTCACAAAAAGCTAGGAGAAGAGCAACATACCCTCATTACAGAGATGGTTGGTTTAAACCCTGAC------CCACCTGCAGATTACATgtagtgaaatggcttattccacagggctcatctgtttccctctctctttg Alignment from Spaln_nt2Genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA gattaatcctatgaaatagtgacaagtcttctcttcttttctgttaacagATCTCCTTCTTCTGAGCCAAACTACAATAGTGAGGGGAAGTGGCTTAACACTTGTGAGCTCCGCACTCACAAAAAGCTAGGAGAAGAGCAACATACCCTCATTACAGAGATGGTTGGTTTAAACCCTGAC------CCACCTGCAGATTACATgtagtgaaatggcttattccacagggctcatctgtttccctctctctttg Alignment from Pairagon GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA gattaatcctatgaaatagtgacaagtcttctcttcttttctgttaacagATCTCCTTCTTCTGAGCCAAACTACAATAGTGAGGGGAAGTGGCTTAACACTTGTGAGCTCCGCACTCACAAAAAGCTAGGAGAAGAGCAACATACCCTCATTACAGAGATGGTTGGTTTAAACCCTGAC------CCACCTGCAGATTACATgtagtgaaatggcttattccacagggctcatctgtttccctctctctttg Alignment from Exonerate_protein2genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA gattaatcctatgaaatagtgacaagtcttctcttcttttctgttaacagATCTCCTTCTTCTGAGCCAAACTACAATAGTGAGGGGAAGTGGCTTAACACTTGTGAGCTCCGCACTCACAAAAAGCTAGGAGAAGAGCAACATACCCTCATTACAGAGATGGTTGGTTTAAACCCTGAC------CCACCTGCAGATTACATgtagtgaaatggcttattccacagggctcatctgtttccctctctctttg Alignment from Exonerate_coding2genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA gattaatcctatgaaatagtgacaagtcttctcttcttttctgttaacagATCTCCTTCTTCTGAGCCAAACTACAATAGTGAGGGGAAGTGGCTTAACACTTGTGAGCTCCGCACTCACAAAAAGCTAGGAGAAGAGCAACATACCCTCATTACAGAGATGGTTGGTTTAAACCCTGAC------CCACCTGCAGATTACATgtagtgaaatggcttattccacagggctcatctgtttccctctctctttg Alignment from GeneWise GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA gattaatcctatgaaatagtgacaagtcttctcttcttttctgttaacagATCTCCTTCTTCTGAGCCAAACTACAATAGTGAGGGGAAGTGGCTTAACACTTGTGAGCTCCGCACTCACAAAAAGCTAGGAGAAGAGCAACATACCCTCATTACAGAGATGGTTGGTTTAAACCCTGAC------CCACCTGCAGATTACATgtagtgaaatggcttattccacagggctcatctgtttccctctctctttg #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ggctcggacattgtctatgctaaactagcctcgttctgcttcctttgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGTATGAATTCTGGTCCATCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCCGGTGGGCCTGGTGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGCCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCGCCAATGggtatgaaaccaagagcatttgcttgggcaaatgtcagacatcccaaggtg Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ggctcggacattgtctatgctaaactagcctcgttctgcttcctttgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGTATGAATTCTGGTCCATCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCCGGTGGGCCTGGTGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGCCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCGCCAATGggtatgaaaccaagagcatttgcttgggcaaatgtcagacatcccaaggtg Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggctcggacattgtctatgctaaactagcctcgttctgcttcctttgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGTATGAATTCTGGTCCATCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCCGGTGGGCCTGGTGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGCCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCGCCAATGGgtatgaaaccaagagcatttgcttgggcaaatgtcagacatcccaaggtg Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggctcggacattgtctatgctaaactagcctcgttctgcttcctttgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGTATGAATTCTGGTCCATCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCCGGTGGGCCTGGTGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGCCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCGCCAATGGgtatgaaaccaagagcatttgcttgggcaaatgtcagacatcccaaggtg Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggctcggacattgtctatgctaaactagcctcgttctgcttcctttgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGTATGAATTCTGGTCCATCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCCGGTGGGCCTGGTGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGCCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCGCCAATGGgtatgaaaccaagagcatttgcttgggcaaatgtcagacatcccaaggtg Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggctcggacattgtctatgctaaactagcctcgttctgcttcctttgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGTATGAATTCTGGTCCATCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCCGGTGGGCCTGGTGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGCCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCGCCAATGGgtatgaaaccaagagcatttgcttgggcaaatgtcagacatcccaaggtg Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggctcggacattgtctatgctaaactagcctcgttctgcttcctttgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGTATGAATTCTGGTCCATCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCCGGTGGGCCTGGTGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGCCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCGCCAATGGgtatgaaaccaagagcatttgcttgggcaaatgtcagacatcccaaggtg Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggctcggacattgtctatgctaaactagcctcgttctgcttcctttgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGTATGAATTCTGGTCCATCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCCGGTGGGCCTGGTGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGCCATGGTGGTCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGCCCCTCCGCCAATGGgtatgaaaccaagagcatttgcttgggcaaatgtcagacatcccaaggtg #### Sf3b2_ID899_19 --> 1 - 0 Original Alignment aAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagtcaaagtatcattctttggtatcacttttggggaaacaacaggAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGGACCGCAACCGTTGGGGGT------ATGGGATCAACCCACATATATGATATGTCTACTgtaagtaatggaaaaacctctagtcaggccaggtggggtcattgatctat Alignment from CESAR aAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagtcaaagtatcattctttggtatcacttttggggaaacaacaggAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGGACCGCAACCGTTGGGGGT------ATGGGATCAACCCACATATATGATATGTCTACTgtaagtaatggaaaaacctctagtcaggccaggtggggtcattgatctat Alignment from Spaln_aa2Genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagtcaaagtatcattctttggtatcacttttggggaaacaacagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGGACCGCAACCGTTGGGGGT------ATGGGATCAACCCACATATATGATATGTCTACTgtaagtaatggaaaaacctctagtcaggccaggtggggtcattgatctat Alignment from Spaln_nt2Genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagtcaaagtatcattctttggtatcacttttggggaaacaacagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGGACCGCAACCGTTGGGGG------TATGGGATCAACCCACATATATGATATGTCTACTgtaagtaatggaaaaacctctagtcaggccaggtggggtcattgatctat Alignment from Pairagon AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagtcaaagtatcattctttggtatcacttttggggaaacaacagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGGACCGCAACCGTTGGGGG------TATGGGATCAACCCACATATATGATATGTCTACTgtaagtaatggaaaaacctctagtcaggccaggtggggtcattgatctat Alignment from Exonerate_protein2genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagtcaaagtatcattctttggtatcacttttggggaaacaacagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGGACCGCAACCGTTGGGGGT------ATGGGATCAACCCACATATATGATATGTCTACTgtaagtaatggaaaaacctctagtcaggccaggtggggtcattgatctat Alignment from Exonerate_coding2genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagtcaaagtatcattctttggtatcacttttggggaaacaacagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGGACCGCAACCGTTGGGGGT------ATGGGATCAACCCACATATATGATATGTCTACTgtaagtaatggaaaaacctctagtcaggccaggtggggtcattgatctat Alignment from GeneWise AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagtcaaagtatcattctttggtatcacttttggggaaacaacagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGGACCGCAACCGTTGGGGGT------ATGGGATCAACCCACATATATGATATGTCTACTgtaagtaatggaaaaacctctagtcaggccaggtggggtcattgatctat #### Sf3b2_ID903_15 --> 0 - 0 Original Alignment AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG agggaaggaggtaggaggtgaaaaccttttttctttgtctttctgtgcagAATGCCCACAAAGTCCCCCCTCCATGGCTGATAGCCATGCAGCGATATGGGCCACCCCCATCCTATCTCAACCTCAAAATCCCTGGACTGAATTCACCTATTCCTGAGgtgaggccaatatgactgtgtcttttgtggagttcttctatgtatatacg Alignment from CESAR AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG agggaaggaggtaggaggtgaaaaccttttttctttgtctttctgtgcagAATGCCCACAAAGTCCCCCCTCCATGGCTGATAGCCATGCAGCGATATGGGCCACCCCCATCCTATCTCAACCTCAAAATCCCTGGACTGAATTCACCTATTCCTGAGgtgaggccaatatgactgtgtcttttgtggagttcttctatgtatatacg Alignment from Spaln_aa2Genome AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG agggaaggaggtaggaggtgaaaaccttttttctttgtctttctgtgcagAATGCCCACAAAGTCCCCCCTCCATGGCTGATAGCCATGCAGCGATATGGGCCACCCCCATCCTATCTCAACCTCAAAATCCCTGGACTGAATTCACCTATTCCTGAGgtgaggccaatatgactgtgtcttttgtggagttcttctatgtatatacg Alignment from Spaln_nt2Genome AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG agggaaggaggtaggaggtgaaaaccttttttctttgtctttctgtgcagAATGCCCACAAAGTCCCCCCTCCATGGCTGATAGCCATGCAGCGATATGGGCCACCCCCATCCTATCTCAACCTCAAAATCCCTGGACTGAATTCACCTATTCCTGAGgtgaggccaatatgactgtgtcttttgtggagttcttctatgtatatacg Alignment from Pairagon AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG agggaaggaggtaggaggtgaaaaccttttttctttgtctttctgtgcagAATGCCCACAAAGTCCCCCCTCCATGGCTGATAGCCATGCAGCGATATGGGCCACCCCCATCCTATCTCAACCTCAAAATCCCTGGACTGAATTCACCTATTCCTGAGgtgaggccaatatgactgtgtcttttgtggagttcttctatgtatatacg Alignment from Exonerate_protein2genome AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG agggaaggaggtaggaggtgaaaaccttttttctttgtctttctgtgcagAATGCCCACAAAGTCCCCCCTCCATGGCTGATAGCCATGCAGCGATATGGGCCACCCCCATCCTATCTCAACCTCAAAATCCCTGGACTGAATTCACCTATTCCTGAGgtgaggccaatatgactgtgtcttttgtggagttcttctatgtatatacg Alignment from Exonerate_coding2genome AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG agggaaggaggtaggaggtgaaaaccttttttctttgtctttctgtgcagAATGCCCACAAAGTCCCCCCTCCATGGCTGATAGCCATGCAGCGATATGGGCCACCCCCATCCTATCTCAACCTCAAAATCCCTGGACTGAATTCACCTATTCCTGAGgtgaggccaatatgactgtgtcttttgtggagttcttctatgtatatacg Alignment from GeneWise AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG agggaaggaggtaggaggtgaaaaccttttttctttgtctttctgtgcagAATGCCCACAAAGTCCCCCCTCCATGGCTGATAGCCATGCAGCGATATGGGCCACCCCCATCCTATCTCAACCTCAAAATCCCTGGACTGAATTCACCTATTCCTGAGgtgaggccaatatgactgtgtcttttgtggagttcttctatgtatatacg #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctgttatcagttcaccccaggaaagtacttttctctccttcctacccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTCTCAGATGAGCTAAGGATCTTCCTAGGAATGCCATTAGGACCTgtcagtgcaagataaattcagcatgcaaagatggggcgtttaatttgctc Alignment from CESAR GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctgttatcagttcaccccaggaaagtacttttctctccttcctacccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTCTCAGATGAGCTAAGGATCTTCCTAGGAATGCCATTAGGACCTgtcagtgcaagataaattcagcatgcaaagatggggcgtttaatttgctc Alignment from Spaln_aa2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctgttatcagttcaccccaggaaagtacttttctctccttcctacccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTCTCAGATGAGCTAAGGATCTTCCTAGGAATGCCATTAGGACCTgtcagtgcaagataaattcagcatgcaaagatggggcgtttaatttgctc Alignment from Spaln_nt2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctgttatcagttcaccccaggaaagtacttttctctccttcctacccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTCTCAGATGAGCTAAGGATCTTCCTAGGAATGCCATTAGGACCTgtcagtgcaagataaattcagcatgcaaagatggggcgtttaatttgctc Alignment from Pairagon GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctgttatcagttcaccccaggaaagtacttttctctccttcctacccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTCTCAGATGAGCTAAGGATCTTCCTAGGAATGCCATTAGGACCTgtcagtgcaagataaattcagcatgcaaagatggggcgtttaatttgctc Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctgttatcagttcaccccaggaaagtacttttctctccttcctacccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTCTCAGATGAGCTAAGGATCTTCCTAGGAATGCCATTAGGACCTgtcagtgcaagataaattcagcatgcaaagatggggcgtttaatttgctc Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctgttatcagttcaccccaggaaagtacttttctctccttcctacccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTCTCAGATGAGCTAAGGATCTTCCTAGGAATGCCATTAGGACCTgtcagtgcaagataaattcagcatgcaaagatggggcgtttaatttgctc Alignment from GeneWise GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctgttatcagttcaccccaggaaagtacttttctctccttcctacccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTCTCAGATGAGCTAAGGATCTTCCTAGGAATGCCATTAGGACCTgtcagtgcaagataaattcagcatgcaaagatggggcgtttaatttgctc #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg ttttttcaacaggataagttttagaccacttctaacattgttttcattagATT---GATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGTTGAAGGAGAGTCAGCAGCAAGAGATGAACTCTCAG---ggtatttttaacagataaacacacattagctgggagctgtcatcactactc Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg ttttttcaacaggataagttttagaccacttctaacattgttttcattagATT---GATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGTTGAAGGAGAGTCAGCAGCAAGAGATGAACTCT---CAGggtatttttaacagataaacacacattagctgggagctgtcatcactactc Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG- ttttttcaacaggataagttttagaccacttctaacattgttttcattagATT---GATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGTTGAAGGAGAGTCAGCAGCAAGAGATGAACTCTCAGGgtatttttaacagataaacacacattagctgggagctgtcatcactactc Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG ttttttcaacaggataagttttagaccacttctaacattgttttcattagAT---TGATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGTTGAAGGAGAGTCAGCAGCAAGAGATGAACTCT---CAGGgtatttttaacagataaacacacattagctgggagctgtcatcactactc Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGGAGGAGGAGG ttttttcaacaggataagttttagaccacttctaacattgttttcattagAT---TGATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGTTGAAGGAGAGTCAGCAGCAAGAGATGAACTCTC------------AGGgtatttttaacagataaacacacattagctgggagctgtcatcactactc Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG ttttttcaacaggataagttttagaccacttctaacattgttttcattagATT---GATCCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGTTGAAGGAGAGTCAGCAGCAAGAGATGAACTCTCAGggtatttttaacagataaacacacattagctgggagctgtcatcactactc Alignment from Exonerate_coding2genome ttttttcaacaggataagttttagaccacttctaacattgttttcattagattgatccctcagtgggccccaaaattcctcaggctgtggaaaaaatccttcagttgaaggagagtcagcagcaagagatgaactctcagggtatttttaacagataaacacacattagctgggagctgtcatcactactc Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG ttttttcaacaggataagttttagaccacttctaacattgttttcattagATTGAT---CCCTCAGTGGGCCCCAAAATTCCTCAGGCTGTGGAAAAAATCCTTCAGTTGAAGGAGAGTCAGCAGCAAGAGATGAACTCT---CAGGgtatttttaacagataaacacacattagctgggagctgtcatcactactc #### Sf3b2_ID914_4 --> 0 - 0 Original Alignment CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcacacatattttctgctaaaacacttactttggtctatttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTACAGCCTCCCCAACCACCTCCACCACCCCCACCTGGCCTTGGTCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCCCTTCAAGTTGGTAAACCTGTTGCACTATCGGAGGAGGAACAGCTAAAGCTGGCACAGAAACAGGCAGCATTATTGATGCAGCAAGAGGAGCATGCCAAGCAGgtaagctgtacaatggctagtgttagacacacaataggacatttatggat Alignment from CESAR CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcacacatattttctgctaaaacacttactttggtctatttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTACAGCCTCCCCAACCACCTCCACCACCCCCACCTGGCCTTGGTCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCCCTTCAAGTTGGTAAACCTGTTGCACTATCGGAGGAGGAACAGCTAAAGCTGGCACAGAAACAGGCAGCATTATTGATGCAGCAAGAGGAGCATGCCAAGCAGgtaagctgtacaatggctagtgttagacacacaataggacatttatggat Alignment from Spaln_aa2Genome CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcacacatattttctgctaaaacacttactttggtctatttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTACAGCCTCCCCAACCACCTCCACCACCCCCACCTGGCCTTGGTCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCCCTTCAAGTTGGTAAACCTGTTGCACTATCGGAGGAGGAACAGCTAAAGCTGGCACAGAAACAGGCAGCATTATTGATGCAGCAAGAGGAGCATGCCAAGCAGgtaagctgtacaatggctagtgttagacacacaataggacatttatggat Alignment from Spaln_nt2Genome CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcacacatattttctgctaaaacacttactttggtctatttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTACAGCCTCCCCAACCACCTCCACCACCCCCACCTGGCCTTGGTCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCCCTTCAAGTTGGTAAACCTGTTGCACTATCGGAGGAGGAACAGCTAAAGCTGGCACAGAAACAGGCAGCATTATTGATGCAGCAAGAGGAGCATGCCAAGCAGgtaagctgtacaatggctagtgttagacacacaataggacatttatggat Alignment from Pairagon CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcacacatattttctgctaaaacacttactttggtctatttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTACAGCCTCCCCAACCACCTCCACCACCCCCACCTGGCCTTGGTCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCCCTTCAAGTTGGTAAACCTGTTGCACTATCGGAGGAGGAACAGCTAAAGCTGGCACAGAAACAGGCAGCATTATTGATGCAGCAAGAGGAGCATGCCAAGCAGgtaagctgtacaatggctagtgttagacacacaataggacatttatggat Alignment from Exonerate_protein2genome CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcacacatattttctgctaaaacacttactttggtctatttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTACAGCCTCCCCAACCACCTCCACCACCCCCACCTGGCCTTGGTCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCCCTTCAAGTTGGTAAACCTGTTGCACTATCGGAGGAGGAACAGCTAAAGCTGGCACAGAAACAGGCAGCATTATTGATGCAGCAAGAGGAGCATGCCAAGCAGgtaagctgtacaatggctagtgttagacacacaataggacatttatggat Alignment from Exonerate_coding2genome ctctctgcacacatattttctgctaaaacacttactttggtctatttcagctatctgggattcatatgccacccccaccaatgggacttccaccactacagcctccccaaccacctccaccacccccacctggccttggtcttgcattccctatggcacacccacctaatttggggccccccccaccccttcaagttggtaaacctgttgcactatcggaggaggaacagctaaagctggcacagaaacaggcagcattattgatgcagcaagaggagcatgccaagcaggtaagctgtacaatggctagtgttagacacacaataggacatttatggat Alignment from GeneWise CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcacacatattttctgctaaaacacttactttggtctatttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTACAGCCTCCCCAACCACCTCCACCACCCCCACCTGGCCTTGGTCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCCCTTCAAGTTGGTAAACCTGTTGCACTATCGGAGGAGGAACAGCTAAAGCTGGCACAGAAACAGGCAGCATTATTGATGCAGCAAGAGGAGCATGCCAAGCAGgtaagctgtacaatggctagtgttagacacacaataggacatttatggat #### Sfr1_ID10328_2 --> 2 - 0 Original Alignment gaAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cccttgtttaggaagctgaatgaccttcatgcgcccgggtctatccacaggaAAACAAGAGTTCACTTCCAAGATGGATAACTCGTCGGATTCTGCATCAGCTTCACCAGATGCTCCACAGCAGAGTGAGAACCCCCCTTCCCCACCATCATCACCAGCAGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCACAAATAAGGGAGAACCCTCCATCACCACCAACATCACCTGCAGCTCCCCAACCTCGGGGGAACCCTCCTTTACAACCAATCACCCCTGCTGCATCTCAGCCAAGGGAGAACCCACCATCACCCCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAACAGTTCTGGTAAACAGgtaggccacatgattataatcagaattagctggggtggttttggaggtga Alignment from CESAR gaAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cccttgtttaggaagctgaatgaccttcatgcgcccgggtctatccacaggaAAACAAGAGTTCACTTCCAAGATGGATAACTCGTCGGATTCTGCATCAGCTTCACCAGATGCTCCACAGCAGAGTGAGAACCCCCCTTCCCCACCATCATCACCAGCAGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCACAAATAAGGGAGAACCCTCCATCACCACCAACATCACCTGCAGCTCCCCAACCTCGGGGGAACCCTCCTTTACAACCAATCACCCCTGCTGCATCTCAGCCAAGGGAGAACCCACCATCACCCCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAACAGTTCTGGTAAACAGgtaggccacatgattataatcagaattagctggggtggttttggaggtga Alignment from Spaln_aa2Genome GAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCT------- ---CAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAG cccttgtttaggaagctgaatgaccttcatgcgcccgggtctatccacagGAAAACAAGAGTTCACTTCCAAGATGGATAACTCGTCGGATTCTGCATCAGCTTCACCAGATGCTCCACAGCAGAgtgagaaccccccttccccaccatcatcaccagcagCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCACAAATAAGGGAGAACCCTCCATCACCACCAACATCACCTGCAGCTCCCCAACCTCGGGGGAACCCTCCTTTACAACCAATCACCCCTGCTGCATCTCAGCCAAGGGAGAACCCACCATCACCCCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAACAGTTCTGGTAAACAGgtaggccacatgattataatcagaattagctggggtggttttggaggtga Alignment from Spaln_nt2Genome GAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cccttgtttaggaagctgaatgaccttcatgcgcccgggtctatccacagGAAAACAAGAGTTCACTTCCAAGATGGATAACTCGTCGGATTCTGCATCAGCTTCACCAGATGCTCCACAGCAGAGTGAGAACCCCCCTTCCCCACCATCATCACCAGCAGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCACAAATAAGGGAGAACCCTCCATCACCACCAACATCACCTGCAGCTCCCCAACCTCGGGGGAACCCTCCTTTACAACCAATCACCCCTGCTGCATCTCAGCCAAGGGAGAACCCACCATCACCCCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAACAGTTCTGGTAAACAGgtaggccacatgattataatcagaattagctggggtggttttggaggtga Alignment from Pairagon GAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cccttgtttaggaagctgaatgaccttcatgcgcccgggtctatccacagGAAAACAAGAGTTCACTTCCAAGATGGATAACTCGTCGGATTCTGCATCAGCTTCACCAGATGCTCCACAGCAGAGTGAGAACCCCCCTTCCCCACCATCATCACCAGCAGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCACAAATAAGGGAGAACCCTCCATCACCACCAACATCACCTGCAGCTCCCCAACCTCGGGGGAACCCTCCTTTACAACCAATCACCCCTGCTGCATCTCAGCCAAGGGAGAACCCACCATCACCCCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAACAGTTCTGGTAAACAGgtaggccacatgattataatcagaattagctggggtggttttggaggtga Alignment from Exonerate_protein2genome GGAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cccttgtttaggaagctgaatgaccttcatgcgcccgggtctatccacaGGAAAACAAGAGTTCACTTCCAAGATGGATAACTCGTCGGATTCTGCATCAGCTTCACCAGATGCTCCACAGCAGAGTGAGAACCCCCCTTCCCCACCATCATCACCAGCAGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCACAAATAAGGGAGAACCCTCCATCACCACCAACATCACCTGCAGCTCCCCAACCTCGGGGGAACCCTCCTTTACAACCAATCACCCCTGCTGCATCTCAGCCAAGGGAGAACCCACCATCACCCCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAACAGTTCTGGTAAACAGgtaggccacatgattataatcagaattagctggggtggttttggaggtga Alignment from Exonerate_coding2genome GGAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cccttgtttaggaagctgaatgaccttcatgcgcccgggtctatccacaGGAAAACAAGAGTTCACTTCCAAGATGGATAACTCGTCGGATTCTGCATCAGCTTCACCAGATGCTCCACAGCAGAGTGAGAACCCCCCTTCCCCACCATCATCACCAGCAGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCACAAATAAGGGAGAACCCTCCATCACCACCAACATCACCTGCAGCTCCCCAACCTCGGGGGAACCCTCCTTTACAACCAATCACCCCTGCTGCATCTCAGCCAAGGGAGAACCCACCATCACCCCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAACAGTTCTGGTAAACAGgtaggccacatgattataatcagaattagctggggtggttttggaggtga Alignment from GeneWise GCTGAGGAAGGAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cccttgtttaggaagctgaatgaccttcatgcgcccgggtCTATCCACAGGAAAACAAGAGTTCACTTCCAAGATGGATAACTCGTCGGATTCTGCATCAGCTTCACCAGATGCTCCACAGCAGAGTGAGAACCCCCCTTCCCCACCATCATCACCAGCAGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCACAAATAAGGGAGAACCCTCCATCACCACCAACATCACCTGCAGCTCCCCAACCTCGGGGGAACCCTCCTTTACAACCAATCACCCCTGCTGCATCTCAGCCAAGGGAGAACCCACCATCACCCCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAACAGTTCTGGTAAACAGgtaggccacatgattataatcagaattagctggggtggttttggaggtga #### Sfr1_ID10329_3 --> 0 - 0 Original Alignment CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG aatatcactgctgttcagaacagcacccgggctccatcgcttgctttcagTCACTCAGTGGAACACCAAAAGCAAGGTTAAAGAAAGCACAATCTTCATCTCATTCACTTTGTGGTGTAGTGAAACACATGAAAGTTGAGAACGATGAAAACAATGAAACCCTTGCAGAACCTGGAGAATCAGCCAAGGAAGAAAATTGCTCAAAAGCTCGAGAGAGCCTGAAGAATAAAGATAGTGAACCTGGAGAAAAGAGTACGGAAGAGAAGAACACTAGTGAATCCAAATCATCAGACACACAATCCTCAAATGCACTTCCAAAAGAATCGGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGACAAAGTAAGGTTGATCAGGCAGGTTGAAGACAAAGAAGATCTTCTCCAAAGGTTAAAGCTGGTCAAGATGTATAGAATAAAAgtaagattgtgttgagttagctatgtatgtccaaattattgcaaactaga Alignment from CESAR CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG aatatcactgctgttcagaacagcacccgggctccatcgcttgctttcagTCACTCAGTGGAACACCAAAAGCAAGGTTAAAGAAAGCACAATCTTCATCTCATTCACTTTGTGGTGTAGTGAAACACATGAAAGTTGAGAACGATGAAAACAATGAAACCCTTGCAGAACCTGGAGAATCAGCCAAGGAAGAAAATTGCTCAAAAGCTCGAGAGAGCCTGAAGAATAAAGATAGTGAACCTGGAGAAAAGAGTACGGAAGAGAAGAACACTAGTGAATCCAAATCATCAGACACACAATCCTCAAATGCACTTCCAAAAGAATCGGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGACAAAGTAAGGTTGATCAGGCAGGTTGAAGACAAAGAAGATCTTCTCCAAAGGTTAAAGCTGGTCAAGATGTATAGAATAAAAgtaagattgtgttgagttagctatgtatgtccaaattattgcaaactaga Alignment from Spaln_aa2Genome AGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAA---CAACCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG AATATCACTGCTGTTCAGAACAGCACCCGGGCTCCATCGCTTGCTTTCAGTCACTCAGTGGAACACCAAAAGCAAGGTTAAAGAAAGCACAATCTTCATCTCATTCACTTTGTGGTGTAGTGAAACACATGAAAGTTGAGAACGATGAAAACAATGAAACCCTTGCAGAACCTGGAGAATCAGCCAAGGAAGAAAATTGCTCAAAAGCTCGAGAGAGCCTGAAGAATAAAGATAGTGAACCTGGAGAAAAGAGTACGGAAGAGAAGAACACTAGTGAATCCAAATCATCAGACACACAATCCTCAAATGCACTTCCAAAAGAATCGGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGACAAAGTAAGGTTGATCAGGCAGGTTGAAGACAAAGAAGATCTTCTCCAAAGGTTAAAGCTGGTCAAGATGTATAGAATAAAAgtaagattgtgttgagttagctatgtatgtccaaattattgcaaactaga Alignment from Spaln_nt2Genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG aatatcactgctgttcagaacagcacccgggctccatcgcttgctttcagTCACTCAGTGGAACACCAAAAGCAAGGTTAAAGAAAGCACAATCTTCATCTCATTCACTTTGTGGTGTAGTGAAACACATGAAAGTTGAGAACGATGAAAACAATGAAACCCTTGCAGAACCTGGAGAATCAGCCAAGGAAGAAAATTGCTCAAAAGCTCGAGAGAGCCTGAAGAATAAAGATAGTGAACCTGGAGAAAAGAGTACGGAAGAGAAGAACACTAGTGAATCCAAATCATCAGACACACAATCCTCAAATGCACTTCCAAAAGAATCGGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGACAAAGTAAGGTTGATCAGGCAGGTTGAAGACAAAGAAGATCTTCTCCAAAGGTTAAAGCTGGTCAAGATGTATAGAATAAAAgtaagattgtgttgagttagctatgtatgtccaaattattgcaaactaga Alignment from Pairagon CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG aatatcactgctgttcagaacagcacccgggctccatcgcttgctttcagTCACTCAGTGGAACACCAAAAGCAAGGTTAAAGAAAGCACAATCTTCATCTCATTCACTTTGTGGTGTAGTGAAACACATGAAAGTTGAGAACGATGAAAACAATGAAACCCTTGCAGAACCTGGAGAATCAGCCAAGGAAGAAAATTGCTCAAAAGCTCGAGAGAGCCTGAAGAATAAAGATAGTGAACCTGGAGAAAAGAGTACGGAAGAGAAGAACACTAGTGAATCCAAATCATCAGACACACAATCCTCAAATGCACTTCCAAAAGAATCGGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGACAAAGTAAGGTTGATCAGGCAGGTTGAAGACAAAGAAGATCTTCTCCAAAGGTTAAAGCTGGTCAAGATGTATAGAATAAAAgtaagattgtgttgagttagctatgtatgtccaaattattgcaaactaga Alignment from Exonerate_protein2genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG aatatcactgctgttcagaacagcacccgggctccatcgcttgctttcagTCACTCAGTGGAACACCAAAAGCAAGGTTAAAGAAAGCACAATCTTCATCTCATTCACTTTGTGGTGTAGTGAAACACATGAAAGTTGAGAACGATGAAAACAATGAAACCCTTGCAGAACCTGGAGAATCAGCCAAGGAAGAAAATTGCTCAAAAGCTCGAGAGAGCCTGAAGAATAAAGATAGTGAACCTGGAGAAAAGAGTACGGAAGAGAAGAACACTAGTGAATCCAAATCATCAGACACACAATCCTCAAATGCACTTCCAAAAGAATCGGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGACAAAGTAAGGTTGATCAGGCAGGTTGAAGACAAAGAAGATCTTCTCCAAAGGTTAAAGCTGGTCAAGATGTATAGAATAAAAgtaagattgtgttgagttagctatgtatgtccaaattattgcaaactaga Alignment from Exonerate_coding2genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG aatatcactgctgttcagaacagcacccgggctccatcgcttgctttcagTCACTCAGTGGAACACCAAAAGCAAGGTTAAAGAAAGCACAATCTTCATCTCATTCACTTTGTGGTGTAGTGAAACACATGAAAGTTGAGAACGATGAAAACAATGAAACCCTTGCAGAACCTGGAGAATCAGCCAAGGAAGAAAATTGCTCAAAAGCTCGAGAGAGCCTGAAGAATAAAGATAGTGAACCTGGAGAAAAGAGTACGGAAGAGAAGAACACTAGTGAATCCAAATCATCAGACACACAATCCTCAAATGCACTTCCAAAAGAATCGGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGACAAAGTAAGGTTGATCAGGCAGGTTGAAGACAAAGAAGATCTTCTCCAAAGGTTAAAGCTGGTCAAGATGTATAGAATAAAAgtaagattgtgttgagttagctatgtatgtccaaattattgcaaactaga Alignment from GeneWise CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG aatatcactgctgttcagaacagcacccgggctccatcgcttgctttcagTCACTCAGTGGAACACCAAAAGCAAGGTTAAAGAAAGCACAATCTTCATCTCATTCACTTTGTGGTGTAGTGAAACACATGAAAGTTGAGAACGATGAAAACAATGAAACCCTTGCAGAACCTGGAGAATCAGCCAAGGAAGAAAATTGCTCAAAAGCTCGAGAGAGCCTGAAGAATAAAGATAGTGAACCTGGAGAAAAGAGTACGGAAGAGAAGAACACTAGTGAATCCAAATCATCAGACACACAATCCTCAAATGCACTTCCAAAAGAATCGGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGACAAAGTAAGGTTGATCAGGCAGGTTGAAGACAAAGAAGATCTTCTCCAAAGGTTAAAGCTGGTCAAGATGTATAGAATAAAAgtaagattgtgttgagttagctatgtatgtccaaattattgcaaactaga #### Sfxn2_ID9967_5 --> 0 - 2 Original Alignment AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGca gtatccacttatatcaactctcattctgtgatgctgtgtctcatctatagAGAGCCCCCCCCTTGGTCGGTCGCTGGGTGCCTTTTGCTGCCATATCAGCAGCTAACTGTGTGAATATCCCAATGATGCGGCAGcagtaagataggttaacgtctttcacagcattttctcctttatcctgtcaca Alignment from CESAR AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGca gtatccacttatatcaactctcattctgtgatgctgtgtctcatctatagAGAGCCCCCCCCTTGGTCGGTCGCTGGGTGCCTTTTGCTGCCATATCAGCAGCTAACTGTGTGAATATCCCAATGATGCGGCAGcagtaagataggttaacgtctttcacagcattttctcctttatcctgtcaca Alignment from Spaln_aa2Genome AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA gtatccacttatatcaactctcattctgtgatgctgtgtctcatctatagAGAGCCCCCCCCTTGGTCGGTCGCTGGGTGCCTTTTGCTGCCATATCAGCAGCTAACTGTGTGAATATCCCAATGATGCGGCAGCAgtaagataggttaacgtctttcacagcattttctcctttatcctgtcaca Alignment from Spaln_nt2Genome AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA gtatccacttatatcaactctcattctgtgatgctgtgtctcatctatagAGAGCCCCCCCCTTGGTCGGTCGCTGGGTGCCTTTTGCTGCCATATCAGCAGCTAACTGTGTGAATATCCCAATGATGCGGCAGCAgtaagataggttaacgtctttcacagcattttctcctttatcctgtcaca Alignment from Pairagon AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA gtatccacttatatcaactctcattctgtgatgctgtgtctcatctatagAGAGCCCCCCCCTTGGTCGGTCGCTGGGTGCCTTTTGCTGCCATATCAGCAGCTAACTGTGTGAATATCCCAATGATGCGGCAGCAgtaagataggttaacgtctttcacagcattttctcctttatcctgtcaca Alignment from Exonerate_protein2genome AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA gtatccacttatatcaactctcattctgtgatgctgtgtctcatctatagAGAGCCCCCCCCTTGGTCGGTCGCTGGGTGCCTTTTGCTGCCATATCAGCAGCTAACTGTGTGAATATCCCAATGATGCGGCAGCAgtaagataggttaacgtctttcacagcattttctcctttatcctgtcaca Alignment from Exonerate_coding2genome AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA gtatccacttatatcaactctcattctgtgatgctgtgtctcatctatagAGAGCCCCCCCCTTGGTCGGTCGCTGGGTGCCTTTTGCTGCCATATCAGCAGCTAACTGTGTGAATATCCCAATGATGCGGCAGCAgtaagataggttaacgtctttcacagcattttctcctttatcctgtcaca Alignment from GeneWise AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA gtatccacttatatcaactctcattctgtgatgctgtgtctcatctatagAGAGCCCCCCCCTTGGTCGGTCGCTGGGTGCCTTTTGCTGCCATATCAGCAGCTAACTGTGTGAATATCCCAATGATGCGGCAGCAgtaagataggttaacgtctttcacagcattttctcctttatcctgtcaca #### Sfxn3_ID9288_6 --> 1 - 1 Original Alignment gGAGCTGCAGGTGGGCATCCCAGTGACTGATGAGGCTGGTCAGAGGCTTGGCCACTCGGTGACTGCTGCCAAACAGGGAATCTTCCAGGTGGTGATATCAAGAATCGGAATGGCGATTCCCGCCATGg tgtacctgtagatggttagtgtgtatccatgcgtggccttttgctctcaggAAGCTTCATGTGGGTATCCCAGTGACTGATAAGGCTGGGCAAAGGCTTGGACACTCAGTGACCGTTGCTAAACAAGGAATTTTCAAGGTAGTGATTTCAAGAATTGGGATGGCAATCCCTGCTATGggtaagtaagttacctgggaaaggggttgttaggtgtacgagcttggtagt Alignment from CESAR gGAGCTGCAGGTGGGCATCCCAGTGACTGATGAGGCTGGTCAGAGGCTTGGCCACTCGGTGACTGCTGCCAAACAGGGAATCTTCCAGGTGGTGATATCAAGAATCGGAATGGCGATTCCCGCCATGg tgtacctgtagatggttagtgtgtatccatgcgtggccttttgctctcaggAAGCTTCATGTGGGTATCCCAGTGACTGATAAGGCTGGGCAAAGGCTTGGACACTCAGTGACCGTTGCTAAACAAGGAATTTTCAAGGTAGTGATTTCAAGAATTGGGATGGCAATCCCTGCTATGggtaagtaagttacctgggaaaggggttgttaggtgtacgagcttggtagt Alignment from Spaln_aa2Genome GGAGCTGCAGGTGGGCATCCCAGTGACTGATGAGGCTGGTCAGAGGCTTGGCCACTCGGTGACTGCTGCCAAACAGGGAATCTTCCAGGTGGTGATATCAAGAATCGGAATGGCGATTCCCGCCATGG tgtacctgtagatggttagtgtgtatccatgcgtggccttttgctctcagGAAGCTTCATGTGGGTATCCCAGTGACTGATAAGGCTGGGCAAAGGCTTGGACACTCAGTGACCGTTGCTAAACAAGGAATTTTCAAGGTAGTGATTTCAAGAATTGGGATGGCAATCCCTGCTATGGgtaagtaagttacctgggaaaggggttgttaggtgtacgagcttggtagt Alignment from Spaln_nt2Genome GGAGCTGCAGGTGGGCATCCCAGTGACTGATGAGGCTGGTCAGAGGCTTGGCCACTCGGTGACTGCTGCCAAACAGGGAATCTTCCAGGTGGTGATATCAAGAATCGGAATGGCGATTCCCGCCATGG tgtacctgtagatggttagtgtgtatccatgcgtggccttttgctctcagGAAGCTTCATGTGGGTATCCCAGTGACTGATAAGGCTGGGCAAAGGCTTGGACACTCAGTGACCGTTGCTAAACAAGGAATTTTCAAGGTAGTGATTTCAAGAATTGGGATGGCAATCCCTGCTATGGgtaagtaagttacctgggaaaggggttgttaggtgtacgagcttggtagt Alignment from Pairagon GGAGCTGCAGGTGGGCATCCCAGTGACTGATGAGGCTGGTCAGAGGCTTGGCCACTCGGTGACTGCTGCCAAACAGGGAATCTTCCAGGTGGTGATATCAAGAATCGGAATGGCGATTCCCGCCATGG tgtacctgtagatggttagtgtgtatccatgcgtggccttttgctctcagGAAGCTTCATGTGGGTATCCCAGTGACTGATAAGGCTGGGCAAAGGCTTGGACACTCAGTGACCGTTGCTAAACAAGGAATTTTCAAGGTAGTGATTTCAAGAATTGGGATGGCAATCCCTGCTATGGgtaagtaagttacctgggaaaggggttgttaggtgtacgagcttggtagt Alignment from Exonerate_protein2genome GGAGCTGCAGGTGGGCATCCCAGTGACTGATGAGGCTGGTCAGAGGCTTGGCCACTCGGTGACTGCTGCCAAACAGGGAATCTTCCAGGTGGTGATATCAAGAATCGGAATGGCGATTCCCGCCATGG tgtacctgtagatggttagtgtgtatccatgcgtggccttttgctctcagGAAGCTTCATGTGGGTATCCCAGTGACTGATAAGGCTGGGCAAAGGCTTGGACACTCAGTGACCGTTGCTAAACAAGGAATTTTCAAGGTAGTGATTTCAAGAATTGGGATGGCAATCCCTGCTATGGgtaagtaagttacctgggaaaggggttgttaggtgtacgagcttggtagt Alignment from Exonerate_coding2genome GGAGCTGCAGGTGGGCATCCCAGTGACTGATGAGGCTGGTCAGAGGCTTGGCCACTCGGTGACTGCTGCCAAACAGGGAATCTTCCAGGTGGTGATATCAAGAATCGGAATGGCGATTCCCGCCATGG tgtacctgtagatggttagtgtgtatccatgcgtggccttttgctctcagGAAGCTTCATGTGGGTATCCCAGTGACTGATAAGGCTGGGCAAAGGCTTGGACACTCAGTGACCGTTGCTAAACAAGGAATTTTCAAGGTAGTGATTTCAAGAATTGGGATGGCAATCCCTGCTATGGgtaagtaagttacctgggaaaggggttgttaggtgtacgagcttggtagt Alignment from GeneWise GGAGCTGCAGGTGGGCATCCCAGTGACTGATGAGGCTGGTCAGAGGCTTGGCCACTCGGTGACTGCTGCCAAACAGGGAATCTTCCAGGTGGTGATATCAAGAATCGGAATGGCGATTCCCGCCATGG tgtacctgtagatggttagtgtgtatccatgcgtggccttttgctctcagGAAGCTTCATGTGGGTATCCCAGTGACTGATAAGGCTGGGCAAAGGCTTGGACACTCAGTGACCGTTGCTAAACAAGGAATTTTCAAGGTAGTGATTTCAAGAATTGGGATGGCAATCCCTGCTATGGgtaagtaagttacctgggaaaggggttgttaggtgtacgagcttggtagt #### Sfxn3_ID9289_7 --> 2 - 0 Original Alignment ccATTCCCCCGGTGATCATGAACACTCTGGAGAAGAAAGACTTCCTGAAG aagtggctaacattttgtaacatgctgtgaacaatcctcatttgttgcagctATTACACCAGTGATCATGAACACTTTAGAGAAGAAAGATTTCCTCAAGgtgagtatctccaggactccaagttttgctgtatggtaatattttcacca Alignment from CESAR ccATTCCCCCGGTGATCATGAACACTCTGGAGAAGAAAGACTTCCTGAAG aagtggctaacattttgtaacatgctgtgaacaatcctcatttgttgcagctATTACACCAGTGATCATGAACACTTTAGAGAAGAAAGATTTCCTCAAGgtgagtatctccaggactccaagttttgctgtatggtaatattttcacca Alignment from Spaln_aa2Genome CCATTCCCCCGGTGATCATGAACACTCTGGAGAAGAAAGACTTCCTGAAG aagtggctaacattttgtaacatgctgtgaacaatcctcatttgttgcagCTATTACACCAGTGATCATGAACACTTTAGAGAAGAAAGATTTCCTCAAGgtgagtatctccaggactccaagttttgctgtatggtaatattttcacca Alignment from Spaln_nt2Genome CCATTCCCCCGGTGATCATGAACACTCTGGAGAAGAAAGACTTCCTGAAG aagtggctaacattttgtaacatgctgtgaacaatcctcatttgttgcagCTATTACACCAGTGATCATGAACACTTTAGAGAAGAAAGATTTCCTCAAGgtgagtatctccaggactccaagttttgctgtatggtaatattttcacca Alignment from Pairagon CCATTCCCCCGGTGATCATGAACACTCTGGAGAAGAAAGACTTCCTGAAG aagtggctaacattttgtaacatgctgtgaacaatcctcatttgttgcagCTATTACACCAGTGATCATGAACACTTTAGAGAAGAAAGATTTCCTCAAGgtgagtatctccaggactccaagttttgctgtatggtaatattttcacca Alignment from Exonerate_protein2genome CCATTCCCCCGGTGATCATGAACACTCTGGAGAAGAAAGACTTCCTGAAG aagtggctaacattttgtaacatgctgtgaacaatcctcatttgttgcagCTATTACACCAGTGATCATGAACACTTTAGAGAAGAAAGATTTCCTCAAGgtgagtatctccaggactccaagttttgctgtatggtaatattttcacca Alignment from Exonerate_coding2genome CCATTCCCCCGGTGATCATGAACACTCTGGAGAAGAAAGACTTCCTGAAG aagtggctaacattttgtaacatgctgtgaacaatcctcatttgttgcagCTATTACACCAGTGATCATGAACACTTTAGAGAAGAAAGATTTCCTCAAGgtgagtatctccaggactccaagttttgctgtatggtaatattttcacca Alignment from GeneWise CCATTCCCCCGGTGATCATGAACACTCTGGAGAAGAAAGACTTCCTGAAG aagtggctaacattttgtaacatgctgtgaacaatcctcatttgttgcagCTATTACACCAGTGATCATGAACACTTTAGAGAAGAAAGATTTCCTCAAGgtgagtatctccaggactccaagttttgctgtatggtaatattttcacca #### Sgms1_ID6685_4 --> 2 - 0 Original Alignment atTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA tgttaaacgcttggatggtgatgagaatactggagtttatctttccccagacTCGCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGTGTTGTTGGTATTTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTGGCCTACTACACTACCACTCGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtaagtgtatcttacttcaaggtatgtgatttaagaaaatgtcaactgac Alignment from CESAR atTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA tgttaaacgcttggatggtgatgagaatactggagtttatctttccccagacTCGCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGTGTTGTTGGTATTTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTGGCCTACTACACTACCACTCGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtaagtgtatcttacttcaaggtatgtgatttaagaaaatgtcaactgac Alignment from Spaln_aa2Genome ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA tgttaaacgcttggatggtgatgagaatactggagtttatctttccccagACTCGCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGTGTTGTTGGTATTTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTGGCCTACTACACTACCACTCGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtaagtgtatcttacttcaaggtatgtgatttaagaaaatgtcaactgac Alignment from Spaln_nt2Genome ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA tgttaaacgcttggatggtgatgagaatactggagtttatctttccccagACTCGCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGTGTTGTTGGTATTTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTGGCCTACTACACTACCACTCGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtaagtgtatcttacttcaaggtatgtgatttaagaaaatgtcaactgac Alignment from Pairagon ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA tgttaaacgcttggatggtgatgagaatactggagtttatctttccccagACTCGCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGTGTTGTTGGTATTTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTGGCCTACTACACTACCACTCGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtaagtgtatcttacttcaaggtatgtgatttaagaaaatgtcaactgac Alignment from Exonerate_protein2genome ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA tgttaaacgcttggatggtgatgagaatactggagtttatctttccccagACTCGCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGTGTTGTTGGTATTTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTGGCCTACTACACTACCACTCGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtaagtgtatcttacttcaaggtatgtgatttaagaaaatgtcaactgac Alignment from Exonerate_coding2genome ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA tgttaaacgcttggatggtgatgagaatactggagtttatctttccccagACTCGCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGTGTTGTTGGTATTTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTGGCCTACTACACTACCACTCGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtaagtgtatcttacttcaaggtatgtgatttaagaaaatgtcaactgac Alignment from GeneWise ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA tgttaaacgcttggatggtgatgagaatactggagtttatctttccccagACTCGCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGTGTTGTTGGTATTTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTGGCCTACTACACTACCACTCGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtaagtgtatcttacttcaaggtatgtgatttaagaaaatgtcaactgac #### Sgms1_ID6686_3 --> 0 - 1 Original Alignment CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGt atatatctggtcaccctatttctgggtatgtttctgttttttttccatagCTCTTTGGTGATTGGGAAGCTCAAATACAGAGAATAATGAAGCTTATTGCGGGAGGTGGCTCATCTGTTACAGGCTCACACAACATGTGCGGTGATTATCTGTACAGTGGCCACACAGTCATGCTAACGTTAACCTATCTATTTATCAAGGATtgtgagggtagtttgcatgtcaatgtaagtgtctacaccttacactctcta Alignment from CESAR CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGt atatatctggtcaccctatttctgggtatgtttctgttttttttccatagCTCTTTGGTGATTGGGAAGCTCAAATACAGAGAATAATGAAGCTTATTGCGGGAGGTGGCTCATCTGTTACAGGCTCACACAACATGTGCGGTGATTATCTGTACAGTGGCCACACAGTCATGCTAACGTTAACCTATCTATTTATCAAGGATtgtgagggtagtttgcatgtcaatgtaagtgtctacaccttacactctcta Alignment from Spaln_aa2Genome CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT atatatctggtcaccctatttctgggtatgtttctgttttttttccatagCTCTTTGGTGATTGGGAAGCTCAAATACAGAGAATAATGAAGCTTATTGCGGGAGGTGGCTCATCTGTTACAGGCTCACACAACATGTGCGGTGATTATCTGTACAGTGGCCACACAGTCATGCTAACGTTAACCTATCTATTTATCAAGGATTgtgagggtagtttgcatgtcaatgtaagtgtctacaccttacactctcta Alignment from Spaln_nt2Genome CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT atatatctggtcaccctatttctgggtatgtttctgttttttttccatagCTCTTTGGTGATTGGGAAGCTCAAATACAGAGAATAATGAAGCTTATTGCGGGAGGTGGCTCATCTGTTACAGGCTCACACAACATGTGCGGTGATTATCTGTACAGTGGCCACACAGTCATGCTAACGTTAACCTATCTATTTATCAAGGATTgtgagggtagtttgcatgtcaatgtaagtgtctacaccttacactctcta Alignment from Pairagon CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT atatatctggtcaccctatttctgggtatgtttctgttttttttccatagCTCTTTGGTGATTGGGAAGCTCAAATACAGAGAATAATGAAGCTTATTGCGGGAGGTGGCTCATCTGTTACAGGCTCACACAACATGTGCGGTGATTATCTGTACAGTGGCCACACAGTCATGCTAACGTTAACCTATCTATTTATCAAGGATTgtgagggtagtttgcatgtcaatgtaagtgtctacaccttacactctcta Alignment from Exonerate_protein2genome CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT atatatctggtcaccctatttctgggtatgtttctgttttttttccatagCTCTTTGGTGATTGGGAAGCTCAAATACAGAGAATAATGAAGCTTATTGCGGGAGGTGGCTCATCTGTTACAGGCTCACACAACATGTGCGGTGATTATCTGTACAGTGGCCACACAGTCATGCTAACGTTAACCTATCTATTTATCAAGGATTgtgagggtagtttgcatgtcaatgtaagtgtctacaccttacactctcta Alignment from Exonerate_coding2genome CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT atatatctggtcaccctatttctgggtatgtttctgttttttttccatagCTCTTTGGTGATTGGGAAGCTCAAATACAGAGAATAATGAAGCTTATTGCGGGAGGTGGCTCATCTGTTACAGGCTCACACAACATGTGCGGTGATTATCTGTACAGTGGCCACACAGTCATGCTAACGTTAACCTATCTATTTATCAAGGATTgtgagggtagtttgcatgtcaatgtaagtgtctacaccttacactctcta Alignment from GeneWise CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT atatatctggtcaccctatttctgggtatgtttctgttttttttccatagCTCTTTGGTGATTGGGAAGCTCAAATACAGAGAATAATGAAGCTTATTGCGGGAGGTGGCTCATCTGTTACAGGCTCACACAACATGTGCGGTGATTATCTGTACAGTGGCCACACAGTCATGCTAACGTTAACCTATCTATTTATCAAGGATTgtgagggtagtttgcatgtcaatgtaagtgtctacaccttacactctcta #### Sh3pxd2a_ID10187_8 --> 2 - 1 Original Alignment gtGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCg cggtgattgttgctagtttcacttccagattattggcatttgtgtttcaggtGCTGACACCAACGCTGAGCCCATGATACTGGAACAGTATGTAGTGGTGTCTAATTATAAAAATCAGGAGAACTCAGAGCTAAGCCTCCAGGCTGGGGAGGTGATCGATGTCATAGATAAGAATGAAAGTggtgagtgtcttcattaaaagtctcagttctctaagcataaccctgggtgt Alignment from CESAR gtGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCg cggtgattgttgctagtttcacttccagattattggcatttgtgtttcaggtGCTGACACCAACGCTGAGCCCATGATACTGGAACAGTATGTAGTGGTGTCTAATTATAAAAATCAGGAGAACTCAGAGCTAAGCCTCCAGGCTGGGGAGGTGATCGATGTCATAGATAAGAATGAAAGTggtgagtgtcttcattaaaagtctcagttctctaagcataaccctgggtgt Alignment from Spaln_aa2Genome GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG cggtgattgttgctagtttcacttccagattattggcatttgtgtttcagGTGCTGACACCAACGCTGAGCCCATGATACTGGAACAGTATGTAGTGGTGTCTAATTATAAAAATCAGGAGAACTCAGAGCTAAGCCTCCAGGCTGGGGAGGTGATCGATGTCATAGATAAGAATGAAAGTGgtgagtgtcttcattaaaagtctcagttctctaagcataaccctgggtgt Alignment from Spaln_nt2Genome GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG cggtgattgttgctagtttcacttccagattattggcatttgtgtttcagGTGCTGACACCAACGCTGAGCCCATGATACTGGAACAGTATGTAGTGGTGTCTAATTATAAAAATCAGGAGAACTCAGAGCTAAGCCTCCAGGCTGGGGAGGTGATCGATGTCATAGATAAGAATGAAAGTGgtgagtgtcttcattaaaagtctcagttctctaagcataaccctgggtgt Alignment from Pairagon GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG cggtgattgttgctagtttcacttccagattattggcatttgtgtttcagGTGCTGACACCAACGCTGAGCCCATGATACTGGAACAGTATGTAGTGGTGTCTAATTATAAAAATCAGGAGAACTCAGAGCTAAGCCTCCAGGCTGGGGAGGTGATCGATGTCATAGATAAGAATGAAAGTGgtgagtgtcttcattaaaagtctcagttctctaagcataaccctgggtgt Alignment from Exonerate_protein2genome AGCTGGGCTGAGTCTCCCAAGAAGGACGTGACAGGTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG cggtgattgttgctagTTTCACTTCCAGATTATTGGCATTTGTGTTTCAGGTGCTGACACCAACGCTGAGCCCATGATACTGGAACAGTATGTAGTGGTGTCTAATTATAAAAATCAGGAGAACTCAGAGCTAAGCCTCCAGGCTGGGGAGGTGATCGATGTCATAGATAAGAATGAAAGTGgtgagtgtcttcattaaaagtctcagttctctaagcataaccctgggtgt Alignment from Exonerate_coding2genome cggtgattgttgctagtttcacttccagattattggcatttgtgtttcaggtgctgacaccaacgctgagcccatgatactggaacagtatgtagtggtgtctaattataaaaatcaggagaactcagagctaagcctccaggctggggaggtgatcgatgtcatagataagaatgaaagtggtgagtgtcttcattaaaagtctcagttctctaagcataaccctgggtgt Alignment from GeneWise GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG cggtgattgttgctagtttcacttccagattattggcatttgtgtttcagGTGCTGACACCAACGCTGAGCCCATGATACTGGAACAGTATGTAGTGGTGTCTAATTATAAAAATCAGGAGAACTCAGAGCTAAGCCTCCAGGCTGGGGAGGTGATCGATGTCATAGATAAGAATGAAAGTGgtgagtgtcttcattaaaagtctcagttctctaagcataaccctgggtgt #### Shoc2_ID11418_4 --> 0 - 0 Original Alignment AGTCTTTTATCCAGTCTTGTAAAATTGAAT---AGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG catcagcattctagtaatttgctaaatgacttgtcgtgtttgtaccatagAGTCTCTTATCTAGTCTAATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAACCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtcagtagagtacacatcttaccagtctcatatataacatctctaaatgg Alignment from CESAR AGTCTTTTATCCAGTCTTGTAAAATTG---AATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG catcagcattctagtaatttgctaaatgacttgtcgtgtttgtaccatagAGTCTCTTATCTAGTCTAATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAACCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtcagtagagtacacatcttaccagtctcatatataacatctctaaatgg Alignment from Spaln_aa2Genome AGTCTTTTATCCAGTCTTGTAAAATTG---AATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG catcagcattctagtaatttgctaaatgacttgtcgtgtttgtaccatagAGTCTCTTATCTAGTCTAATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAACCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtcagtagagtacacatcttaccagtctcatatataacatctctaaatgg Alignment from Spaln_nt2Genome AGTCTTTTATCCAGTCTTGTAAAATTGAATA---GCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAA---GTAAGCTGAATATGAAG catcagcattctagtaatttgctaaatgacttgtcgtgtttgtaccatagAGTCTCTTATCTAGTCTAATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAACCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtcagtagagtacacatcttaccagtctcatatataacatctctaaatgg Alignment from Pairagon AGTCTTTTATCCAGTCTTGTAAAATT---GAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGT---TAAGTAAGCTGAATATGAAG catcagcattctagtaatttgctaaatgacttgtcgtgtttgtaccatagAGTCTCTTATCTAGTCTAATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAACCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtcagtagagtacacatcttaccagtctcatatataacatctctaaatgg Alignment from Exonerate_protein2genome AGTCTTTTATCCAGTCTTGTAAAATTG---AATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG catcagcattctagtaatttgctaaatgacttgtcgtgtttgtaccatagAGTCTCTTATCTAGTCTAATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAACCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtcagtagagtacacatcttaccagtctcatatataacatctctaaatgg Alignment from Exonerate_coding2genome AGTCTTTTATCCAGTCTTGTAAAATTG---AATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG catcagcattctagtaatttgctaaatgacttgtcgtgtttgtaccatagAGTCTCTTATCTAGTCTAATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAACCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtcagtagagtacacatcttaccagtctcatatataacatctctaaatgg Alignment from GeneWise AGTCTTTTATCCAGTCTTGTAAAATTG---AATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG catcagcattctagtaatttgctaaatgacttgtcgtgtttgtaccatagAGTCTCTTATCTAGTCTAATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAACCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtcagtagagtacacatcttaccagtctcatatataacatctctaaatgg #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcaggCCA---CCTGGGAGCTTATCAGGAAAGGTGTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcaggCCA---CCTGGGAGCTTATCAGGAAAGGTGTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcagGCCA---CCTGGGAGCTTATCAGGAAAGGTGTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcagGCC---ACCTGGGAGCTTATCAGGAAAGGTGTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcagGCC---ACCTGGGAGCTTATCAGGAAAGGTGTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcagGCCA---CCTGGGAGCTTATCAGGAAAGGTGTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from Exonerate_coding2genome tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcaggccacctgggagcttatcaggaaaggtgtctcatctagagtccatgctctggaaattgcaagaagatctgcagcgggtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG tcatgttgcttaattttctgtcgggtgtaactgtcctgtcttcattgcagGCCA---CCTGGGAGCTTATCAGGAAAGGTGTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAAGATCTGCAGCGGgtaagattccaacctggaggaaagggaggaaagggtttacacggttgcca #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagttATGCCGGAAGCTGCCACTGAAACATTGGAT---GAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAggtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaat Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagttATGCCGGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAggtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaag Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaat Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATT---GGATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaat Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATT---GGATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaat Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaat Alignment from Exonerate_coding2genome AAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagttatgccgGAAGCTGCCACTGAAACATTG--GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaat Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgataccattgtgtttgctcttgaagagcccttttctggtttcagTTATGCCGGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccgtgtcttgggaaggggatgctgttcattgggcttttgcaat #### Sipa1_ID1149_3 --> 0 - 0 Original Alignment CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG ttgtcaaagtcattctctgtcaagaattttcacttttgtttttcttgcagCTCCGGACCCTTCATGGTACTATTTCTGAAGATGGATTGCCTCCGGGTCCCCCACGGGGACTGTCTCCGAGAAAGCTTTTAGAAAAAGGAGCTCCTTGTGTGAGCCCTGCCTGCCCACACCTGGGATTAGCCTCCCTAATAGTGCCTCGCATTCTACTTACTCTGGATGAGCAAGTGgtagggaccctggcaaataacaggtgtcataacatttttggcttacattt Alignment from CESAR CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG ttgtcaaagtcattctctgtcaagaattttcacttttgtttttcttgcagCTCCGGACCCTTCATGGTACTATTTCTGAAGATGGATTGCCTCCGGGTCCCCCACGGGGACTGTCTCCGAGAAAGCTTTTAGAAAAAGGAGCTCCTTGTGTGAGCCCTGCCTGCCCACACCTGGGATTAGCCTCCCTAATAGTGCCTCGCATTCTACTTACTCTGGATGAGCAAGTGgtagggaccctggcaaataacaggtgtcataacatttttggcttacattt Alignment from Spaln_aa2Genome CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG ttgtcaaagtcattctctgtcaagaattttcacttttgtttttcttgcagCTCCGGACCCTTCATGGTACTATTTCTGAAGATGGATTGCCTCCGGGTCCCCCACGGGGACTGTCTCCGAGAAAGCTTTTAGAAAAAGGAGCTCCTTGTGTGAGCCCTGCCTGCCCACACCTGGGATTAGCCTCCCTAATAGTGCCTCGCATTCTACTTACTCTGGATGAGCAAGTGgtagggaccctggcaaataacaggtgtcataacatttttggcttacattt Alignment from Spaln_nt2Genome CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG ttgtcaaagtcattctctgtcaagaattttcacttttgtttttcttgcagCTCCGGACCCTTCATGGTACTATTTCTGAAGATGGATTGCCTCCGGGTCCCCCACGGGGACTGTCTCCGAGAAAGCTTTTAGAAAAAGGAGCTCCTTGTGTGAGCCCTGCCTGCCCACACCTGGGATTAGCCTCCCTAATAGTGCCTCGCATTCTACTTACTCTGGATGAGCAAGTGgtagggaccctggcaaataacaggtgtcataacatttttggcttacattt Alignment from Pairagon CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG ttgtcaaagtcattctctgtcaagaattttcacttttgtttttcttgcagCTCCGGACCCTTCATGGTACTATTTCTGAAGATGGATTGCCTCCGGGTCCCCCACGGGGACTGTCTCCGAGAAAGCTTTTAGAAAAAGGAGCTCCTTGTGTGAGCCCTGCCTGCCCACACCTGGGATTAGCCTCCCTAATAGTGCCTCGCATTCTACTTACTCTGGATGAGCAAGTGgtagggaccctggcaaataacaggtgtcataacatttttggcttacattt Alignment from Exonerate_protein2genome CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG ttgtcaaagtcattctctgtcaagaattttcacttttgtttttcttgcagCTCCGGACCCTTCATGGTACTATTTCTGAAGATGGATTGCCTCCGGGTCCCCCACGGGGACTGTCTCCGAGAAAGCTTTTAGAAAAAGGAGCTCCTTGTGTGAGCCCTGCCTGCCCACACCTGGGATTAGCCTCCCTAATAGTGCCTCGCATTCTACTTACTCTGGATGAGCAAGTGgtagggaccctggcaaataacaggtgtcataacatttttggcttacattt Alignment from Exonerate_coding2genome CAGCTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG ttgtcaaagtcattctctgtcaagaattttcacttttgtttttcttgCAGCTCCGGACCCTTCATGGTACTATTTCTGAAGATGGATTGCCTCCGGGTCCCCCACGGGGACTGTCTCCGAGAAAGCTTTTAGAAAAAGGAGCTCCTTGTGTGAGCCCTGCCTGCCCACACCTGGGATTAGCCTCCCTAATAGTGCCTCGCATTCTACTTACTCTGGATGAGCAAGTGgtagggaccctggcaaataacaggtgtcataacatttttggcttacattt Alignment from GeneWise CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG ttgtcaaagtcattctctgtcaagaattttcacttttgtttttcttgcagCTCCGGACCCTTCATGGTACTATTTCTGAAGATGGATTGCCTCCGGGTCCCCCACGGGGACTGTCTCCGAGAAAGCTTTTAGAAAAAGGAGCTCCTTGTGTGAGCCCTGCCTGCCCACACCTGGGATTAGCCTCCCTAATAGTGCCTCGCATTCTACTTACTCTGGATGAGCAAGTGgtagggaccctggcaaataacaggtgtcataacatttttggcttacattt #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caaaagggattacaataaaccagcaagatctttctctttgtacttaacagaaCATCAAAACTTCTTTGGACTCGATGAGGCACTAGGTCCGGTGGCTTTGAGTCTCCAACGGGAGGAAAAGCAAGGCAGCCGAGGGGCCCCCTTACGCAGTTTTCAAGTCATTGTGCAAACAATGCAGgtgagtacatagtgaacaagcaatctgcaaaatgagaagatatacaagaa Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caaaagggattacaataaaccagcaagatctttctctttgtacttaacagaaCATCAAAACTTCTTTGGACTCGATGAGGCACTAGGTCCGGTGGCTTTGAGTCTCCAACGGGAGGAAAAGCAAGGCAGCCGAGGGGCCCCCTTACGCAGTTTTCAAGTCATTGTGCAAACAATGCAGgtgagtacatagtgaacaagcaatctgcaaaatgagaagatatacaagaa Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caaaagggattacaataaaccagcaagatctttctctttgtacttaacagAACATCAAAACTTCTTTGGACTCGATGAGGCACTAGGTCCGGTGGCTTTGAGTCTCCAACGGGAGGAAAAGCAAGGCAGCCGAGGGGCCCCCTTACGCAGTTTTCAAGTCATTGTGCAAACAATGCAGgtgagtacatagtgaacaagcaatctgcaaaatgagaagatatacaagaa Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caaaagggattacaataaaccagcaagatctttctctttgtacttaacagAACATCAAAACTTCTTTGGACTCGATGAGGCACTAGGTCCGGTGGCTTTGAGTCTCCAACGGGAGGAAAAGCAAGGCAGCCGAGGGGCCCCCTTACGCAGTTTTCAAGTCATTGTGCAAACAATGCAGgtgagtacatagtgaacaagcaatctgcaaaatgagaagatatacaagaa Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caaaagggattacaataaaccagcaagatctttctctttgtacttaacagAACATCAAAACTTCTTTGGACTCGATGAGGCACTAGGTCCGGTGGCTTTGAGTCTCCAACGGGAGGAAAAGCAAGGCAGCCGAGGGGCCCCCTTACGCAGTTTTCAAGTCATTGTGCAAACAATGCAGgtgagtacatagtgaacaagcaatctgcaaaatgagaagatatacaagaa Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caaaagggattacaataaaccagcaagatctttctctttgtacttaacagAACATCAAAACTTCTTTGGACTCGATGAGGCACTAGGTCCGGTGGCTTTGAGTCTCCAACGGGAGGAAAAGCAAGGCAGCCGAGGGGCCCCCTTACGCAGTTTTCAAGTCATTGTGCAAACAATGCAGgtgagtacatagtgaacaagcaatctgcaaaatgagaagatatacaagaa Alignment from Exonerate_coding2genome caaaagggattacaataaaccagcaagatctttctctttgtacttaacagaacatcaaaacttctttggactcgatgaggcactaggtccggtggctttgagtctccaacgggaggaaaagcaaggcagccgaggggcccccttacgcagttttcaagtcattgtgcaaacaatgcaggtgagtacatagtgaacaagcaatctgcaaaatgagaagatatacaagaa Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caaaagggattacaataaaccagcaagatctttctctttgtacttaacagAACATCAAAACTTCTTTGGACTCGATGAGGCACTAGGTCCGGTGGCTTTGAGTCTCCAACGGGAGGAAAAGCAAGGCAGCCGAGGGGCCCCCTTACGCAGTTTTCAAGTCATTGTGCAAACAATGCAGgtgagtacatagtgaacaagcaatctgcaaaatgagaagatatacaagaa #### Slc15a3_ID3030_5 --> 0 - 1 Original Alignment ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAg gggatgagttatccttcttcctatgtaggctcccggcttgccgcctgcagGTCCCAGATGCATGGCTTCTATCAGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCAGTGAAAGAGCACCTGATAGATACTCCCTTGGTGTTGTGGTGC------ATGCCATCATCTCTACAAAAAGCAGCTCTAGGCATGTTTTTTGGTTTTGTCTCCATCATTGTCGCAggtacgtggtatcatttatacatcccccatgcaccagggcccaggtcattg Alignment from CESAR ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAg gggatgagttatccttcttcctatgtaggctcccggcttgccgcctgcagGTCCCAGATGCATGGCTTCTATCAGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCAGTGAAAGAGCACCTGATAGATACTCCCTTGGTGTTGTGGTGC------ATGCCATCATCTCTACAAAAAGCAGCTCTAGGCATGTTTTTTGGTTTTGTCTCCATCATTGTCGCAggtacgtggtatcatttatacatcccccatgcaccagggcccaggtcattg Alignment from Spaln_aa2Genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG gggatgagttatccttcttcctatgtaggctcccggcttgccgcctgcagGTCCCAGATGCATGGCTTCTATCAGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCAGTGAAAGAGCACCTGATAGATACTCCCTTGGTGTTGTGGTGC------ATGCCATCATCTCTACAAAAAGCAGCTCTAGGCATGTTTTTTGGTTTTGTCTCCATCATTGTCGCAGgtacgtggtatcatttatacatcccccatgcaccagggcccaggtcattg Alignment from Spaln_nt2Genome ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTG---CGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGATCCTC---TGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG gggatgagttatccttcttcctatgtaggctcccggcttgccgcctgcagGTCCCAGATGCATGGCTTCTATCAGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCAGTGAAAGAGCACCTGATAGATACTCCCTTGGTGTTGTGGTGCA------TGCCATCATCTCTACAAAAAGCAGCTCTAGGCATGTTTTTTGGTTTTGTCTCCATCATTGTCGCAGgtacgtggtatcatttatacatcccccatgcaccagggcccaggtcattg Alignment from Pairagon ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGATCCTC---TGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG gggatgagttatccttcttcctatgtaggctcccggcttgccgcctgcagGTCCCAGATGCATGGCTTCTATCAGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCAGTGAAAGAGCACCTGATAGATACTCCCTTGGTGTTGTGGTGCA------TGCCATCATCTCTACAAAAAGCAGCTCTAGGCATGTTTTTTGGTTTTGTCTCCATCATTGTCGCAGgtacgtggtatcatttatacatcccccatgcaccagggcccaggtcattg Alignment from Exonerate_protein2genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGATCCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG gggatgagttatccttcttcctatgtaggctcccggcttgccgcctgcagGTCCCAGATGCATGGCTTCTATCAGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCAGTGAAAGAGCACCTGATAGATACTCCCTTGGTG---TTGTGGTGCATGCCATCATCTCTACAAAAAGCAGCTCTAGGCATGTTTTTTGGTTTTGTCTCCATCATTGTCGCAGgtacgtggtatcatttatacatcccccatgcaccagggcccaggtcattg Alignment from Exonerate_coding2genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGATCCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG gggatgagttatccttcttcctatgtaggctcccggcttgccgcctgcagGTCCCAGATGCATGGCTTCTATCAGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCAGTGAAAGAGCACCTGATAGATACTCCCTTGGTG---TTGTGGTGCATGCCATCATCTCTACAAAAAGCAGCTCTAGGCATGTTTTTTGGTTTTGTCTCCATCATTGTCGCAGgtacgtggtatcatttatacatcccccatgcaccagggcccaggtcattg Alignment from GeneWise ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTT---GCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG gggatgagttatccttcttcctatgtaggctcccggcttgccgcctgcagGTCCCAGATGCATGGCTTCTATCAGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCAGTGAAAGAGCACCTGATAGATACTCCCTTGGTGTTGTGGTGC------ATGCCATCATCTCTACAAAAAGCAGCTCTAGGCATGTTTTTTGGTTTTGTCTCCATCATTGTCGCAGgtacgtggtatcatttatacatcccccatgcaccagggcccaggtcattg #### Slc15a3_ID3031_6 --> 2 - 1 Original Alignment gaGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAg gactgatggtgccaccaccacctcttgatggacaccctgtgtgtttgcagggGTCCTAGAGAAGGAACACCTGCACTTCATTGCTGCAAACCAGACAGTACCACAACTGATCAGCCAAGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAATTCTTACTCATTGGTGTTAGTGAAATCTTTGCCAGCATCCCAggtaacccctaatccgctctgtggttaccatgtctagttcattgaacattc Alignment from CESAR gaGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAg gactgatggtgccaccaccacctcttgatggacaccctgtgtgtttgcagggGTCCTAGAGAAGGAACACCTGCACTTCATTGCTGCAAACCAGACAGTACCACAACTGATCAGCCAAGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAATTCTTACTCATTGGTGTTAGTGAAATCTTTGCCAGCATCCCAggtaacccctaatccgctctgtggttaccatgtctagttcattgaacattc Alignment from Spaln_aa2Genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG gactgatggtgccaccaccacctcttgatggacaccctgtgtgtttgcagGGGTCCTAGAGAAGGAACACCTGCACTTCATTGCTGCAAACCAGACAGTACCACAACTGATCAGCCAAGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAATTCTTACTCATTGGTGTTAGTGAAATCTTTGCCAGCATCCCAGgtaacccctaatccgctctgtggttaccatgtctagttcattgaacattc Alignment from Spaln_nt2Genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG gactgatggtgccaccaccacctcttgatggacaccctgtgtgtttgcagGGGTCCTAGAGAAGGAACACCTGCACTTCATTGCTGCAAACCAGACAGTACCACAACTGATCAGCCAAGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAATTCTTACTCATTGGTGTTAGTGAAATCTTTGCCAGCATCCCAGgtaacccctaatccgctctgtggttaccatgtctagttcattgaacattc Alignment from Pairagon GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG gactgatggtgccaccaccacctcttgatggacaccctgtgtgtttgcagGGGTCCTAGAGAAGGAACACCTGCACTTCATTGCTGCAAACCAGACAGTACCACAACTGATCAGCCAAGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAATTCTTACTCATTGGTGTTAGTGAAATCTTTGCCAGCATCCCAGgtaacccctaatccgctctgtggttaccatgtctagttcattgaacattc Alignment from Exonerate_protein2genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG gactgatggtgccaccaccacctcttgatggacaccctgtgtgtttgcagGGGTCCTAGAGAAGGAACACCTGCACTTCATTGCTGCAAACCAGACAGTACCACAACTGATCAGCCAAGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAATTCTTACTCATTGGTGTTAGTGAAATCTTTGCCAGCATCCCAGgtaacccctaatccgctctgtggttaccatgtctagttcattgaacattc Alignment from Exonerate_coding2genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG gactgatggtgccaccaccacctcttgatggacaccctgtgtgtttgcagGGGTCCTAGAGAAGGAACACCTGCACTTCATTGCTGCAAACCAGACAGTACCACAACTGATCAGCCAAGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAATTCTTACTCATTGGTGTTAGTGAAATCTTTGCCAGCATCCCAGgtaacccctaatccgctctgtggttaccatgtctagttcattgaacattc Alignment from GeneWise GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG gactgatggtgccaccaccacctcttgatggacaccctgtgtgtttgcagGGGTCCTAGAGAAGGAACACCTGCACTTCATTGCTGCAAACCAGACAGTACCACAACTGATCAGCCAAGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAATTCTTACTCATTGGTGTTAGTGAAATCTTTGCCAGCATCCCAGgtaacccctaatccgctctgtggttaccatgtctagttcattgaacattc #### Slc18a2_ID12935_3 --> 1 - 1 Original Alignment aATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTa tctactggtaacatgtatgagggtcttcatccatctgtctcgtcccccagaATTGGTTATCCAATACCCATGTTCGCTGGATTCTGCATCATGTTTATTTCAACAGTTagtaagtctggttgttccatcttacagaggctccagtgggagaagcatgcc Alignment from CESAR aATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTa tctactggtaacatgtatgagggtcttcatccatctgtctcgtcccccagaATTGGTTATCCAATACCCATGTTCGCTGGATTCTGCATCATGTTTATTTCAACAGTTagtaagtctggttgttccatcttacagaggctccagtgggagaagcatgcc Alignment from Spaln_aa2Genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tctactggtaacatgtatgagggtcttcatccatctgtctcgtcccccagAATTGGTTATCCAATACCCATGTTCGCTGGATTCTGCATCATGTTTATTTCAACAGTTAgtaagtctggttgttccatcttacagaggctccagtgggagaagcatgcc Alignment from Spaln_nt2Genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tctactggtaacatgtatgagggtcttcatccatctgtctcgtcccccagAATTGGTTATCCAATACCCATGTTCGCTGGATTCTGCATCATGTTTATTTCAACAGTTAgtaagtctggttgttccatcttacagaggctccagtgggagaagcatgcc Alignment from Pairagon AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tctactggtaacatgtatgagggtcttcatccatctgtctcgtcccccagAATTGGTTATCCAATACCCATGTTCGCTGGATTCTGCATCATGTTTATTTCAACAGTTAgtaagtctggttgttccatcttacagaggctccagtgggagaagcatgcc Alignment from Exonerate_protein2genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tctactggtaacatgtatgagggtcttcatccatctgtctcgtcccccagAATTGGTTATCCAATACCCATGTTCGCTGGATTCTGCATCATGTTTATTTCAACAGTTAgtaagtctggttgttccatcttacagaggctccagtgggagaagcatgcc Alignment from Exonerate_coding2genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tctactggtaacatgtatgagggtcttcatccatctgtctcgtcccccagAATTGGTTATCCAATACCCATGTTCGCTGGATTCTGCATCATGTTTATTTCAACAGTTAgtaagtctggttgttccatcttacagaggctccagtgggagaagcatgcc Alignment from GeneWise AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tctactggtaacatgtatgagggtcttcatccatctgtctcgtcccccagAATTGGTTATCCAATACCCATGTTCGCTGGATTCTGCATCATGTTTATTTCAACAGTTAgtaagtctggttgttccatcttacagaggctccagtgggagaagcatgcc #### Slc18a2_ID12937_5 --> 2 - 1 Original Alignment ggATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAg cagatgaacctgttacatgttataagattctttcaacataatcactccaggcATGGGGATGTTGGCAAGCATATACACGGATGACAAGGAAAGGGATAACGCAATGGGCATTGCACTTGTGGGCTTGGCAATGGGAGTTTTAggtaaagctgtgaaagttgtgggattaggtgtcctggctaacaactgtgga Alignment from CESAR ggATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAg cagatgaacctgttacatgttataagattctttcaacataatcactccaggcATGGGGATGTTGGCAAGCATATACACGGATGACAAGGAAAGGGATAACGCAATGGGCATTGCACTTGTGGGCTTGGCAATGGGAGTTTTAggtaaagctgtgaaagttgtgggattaggtgtcctggctaacaactgtgga Alignment from Spaln_aa2Genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG cagatgaacctgttacatgttataagattctttcaacataatcactccagGCATGGGGATGTTGGCAAGCATATACACGGATGACAAGGAAAGGGATAACGCAATGGGCATTGCACTTGTGGGCTTGGCAATGGGAGTTTTAGgtaaagctgtgaaagttgtgggattaggtgtcctggctaacaactgtgga Alignment from Spaln_nt2Genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG cagatgaacctgttacatgttataagattctttcaacataatcactccagGCATGGGGATGTTGGCAAGCATATACACGGATGACAAGGAAAGGGATAACGCAATGGGCATTGCACTTGTGGGCTTGGCAATGGGAGTTTTAGgtaaagctgtgaaagttgtgggattaggtgtcctggctaacaactgtgga Alignment from Pairagon GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG cagatgaacctgttacatgttataagattctttcaacataatcactccagGCATGGGGATGTTGGCAAGCATATACACGGATGACAAGGAAAGGGATAACGCAATGGGCATTGCACTTGTGGGCTTGGCAATGGGAGTTTTAGgtaaagctgtgaaagttgtgggattaggtgtcctggctaacaactgtgga Alignment from Exonerate_protein2genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG cagatgaacctgttacatgttataagattctttcaacataatcactccagGCATGGGGATGTTGGCAAGCATATACACGGATGACAAGGAAAGGGATAACGCAATGGGCATTGCACTTGTGGGCTTGGCAATGGGAGTTTTAGgtaaagctgtgaaagttgtgggattaggtgtcctggctaacaactgtgga Alignment from Exonerate_coding2genome cagatgaacctgttacatgttataagattctttcaacataatcactccaggcatggggatgttggcaagcatatacacggatgacaaggaaagggataacgcaatgggcattgcacttgtgggcttggcaatgggagttttaggtaaagctgtgaaagttgtgggattaggtgtcctggctaacaactgtgga Alignment from GeneWise GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG cagatgaacctgttacatgttataagattctttcaacataatcactccagGCATGGGGATGTTGGCAAGCATATACACGGATGACAAGGAAAGGGATAACGCAATGGGCATTGCACTTGTGGGCTTGGCAATGGGAGTTTTAGgtaaagctgtgaaagttgtgggattaggtgtcctggctaacaactgtgga #### Slc18a2_ID12941_9 --> 2 - 1 Original Alignment gcTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGg accatagaaagcttaacaagacaaggaaaaatgggctggctctgtttcaggcTCCATCCGTTTTGCAAATATGGGGATAGCCATTCTGGAACCTGCACTACCCATCTGGATGATGAAGACTATGTGTTCCAAAAAGTGGCAACTGggtgagtgtcaacttgttctcactgctgaccccaaaaggcctctccagcag Alignment from CESAR gcTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGg accatagaaagcttaacaagacaaggaaaaatgggctggctctgtttcaggcTCCATCCGTTTTGCAAATATGGGGATAGCCATTCTGGAACCTGCACTACCCATCTGGATGATGAAGACTATGTGTTCCAAAAAGTGGCAACTGggtgagtgtcaacttgttctcactgctgaccccaaaaggcctctccagcag Alignment from Spaln_aa2Genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG accatagaaagcttaacaagacaaggaaaaatgggctggctctgtttcagGCTCCATCCGTTTTGCAAATATGGGGATAGCCATTCTGGAACCTGCACTACCCATCTGGATGATGAAGACTATGTGTTCCAAAAAGTGGCAACTGGgtgagtgtcaacttgttctcactgctgaccccaaaaggcctctccagcag Alignment from Spaln_nt2Genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG accatagaaagcttaacaagacaaggaaaaatgggctggctctgtttcagGCTCCATCCGTTTTGCAAATATGGGGATAGCCATTCTGGAACCTGCACTACCCATCTGGATGATGAAGACTATGTGTTCCAAAAAGTGGCAACTGGgtgagtgtcaacttgttctcactgctgaccccaaaaggcctctccagcag Alignment from Pairagon GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG accatagaaagcttaacaagacaaggaaaaatgggctggctctgtttcagGCTCCATCCGTTTTGCAAATATGGGGATAGCCATTCTGGAACCTGCACTACCCATCTGGATGATGAAGACTATGTGTTCCAAAAAGTGGCAACTGGgtgagtgtcaacttgttctcactgctgaccccaaaaggcctctccagcag Alignment from Exonerate_protein2genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG accatagaaagcttaacaagacaaggaaaaatgggctggctctgtttcagGCTCCATCCGTTTTGCAAATATGGGGATAGCCATTCTGGAACCTGCACTACCCATCTGGATGATGAAGACTATGTGTTCCAAAAAGTGGCAACTGGgtgagtgtcaacttgttctcactgctgaccccaaaaggcctctccagcag Alignment from Exonerate_coding2genome accatagaaagcttaacaagacaaggaaaaatgggctggctctgtttcaggctccatccgttttgcaaatatggggatagccattctggaacctgcactacccatctggatgatgaagactatgtgttccaaaaagtggcaactgggtgagtgtcaacttgttctcactgctgaccccaaaaggcctctccagcag Alignment from GeneWise GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG accatagaaagcttaacaagacaaggaaaaatgggctggctctgtttcagGCTCCATCCGTTTTGCAAATATGGGGATAGCCATTCTGGAACCTGCACTACCCATCTGGATGATGAAGACTATGTGTTCCAAAAAGTGGCAACTGGgtgagtgtcaacttgttctcactgctgaccccaaaaggcctctccagcag #### Slc18a2_ID12946_13 --> 2 - 1 Original Alignment ggATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCg aagcctggttacagcccttcctcgcatgcttctgctgtctgtcaatccagggATGGTTGATTCCTCCATGATCCCAGTTATGGGATATCTGGGCGACCTCCATCATGTCTCCATCTATGGCAGTGTATATGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATAagtgagaactctgcttgggaacttaaaaatatcattttgtactgtcaagga Alignment from CESAR ggATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCg aagcctggttacagcccttcctcgcatgcttctgctgtctgtcaatccagggATGGTTGATTCCTCCATGATCCCAGTTATGGGATATCTGGGCGACCTCCATCATGTCTCCATCTATGGCAGTGTATATGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATAagtgagaactctgcttgggaacttaaaaatatcattttgtactgtcaagga Alignment from Spaln_aa2Genome GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG aagcctggttacagcccttcctcgcatgcttctgctgtctgtcaatccagGGATGGTTGATTCCTCCATGATCCCAGTTATGGGATATCTGGGCGACCTCCATCATGTCTCCATCTATGGCAGTGTATATGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATAAgtgagaactctgcttgggaacttaaaaatatcattttgtactgtcaagga Alignment from Spaln_nt2Genome GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG aagcctggttacagcccttcctcgcatgcttctgctgtctgtcaatccagGGATGGTTGATTCCTCCATGATCCCAGTTATGGGATATCTGGGCGACCTCCATCATGTCTCCATCTATGGCAGTGTATATGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATAAgtgagaactctgcttgggaacttaaaaatatcattttgtactgtcaagga Alignment from Pairagon GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG aagcctggttacagcccttcctcgcatgcttctgctgtctgtcaatccagGGATGGTTGATTCCTCCATGATCCCAGTTATGGGATATCTGGGCGACCTCCATCATGTCTCCATCTATGGCAGTGTATATGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATAAgtgagaactctgcttgggaacttaaaaatatcattttgtactgtcaagga Alignment from Exonerate_protein2genome GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG aagcctggttacagcccttcctcgcatgcttctgctgtctgtcaatccagGGATGGTTGATTCCTCCATGATCCCAGTTATGGGATATCTGGGCGACCTCCATCATGTCTCCATCTATGGCAGTGTATATGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATAAgtgagaactctgcttgggaacttaaaaatatcattttgtactgtcaagga Alignment from Exonerate_coding2genome aagcctggttacagcccttcctcgcatgcttctgctgtctgtcaatccagggatggttgattcctccatgatcccagttatgggatatctgggcgacctccatcatgtctccatctatggcagtgtatatgccattgctgatgttgccttctgcatggggtatgctataagtgagaactctgcttgggaacttaaaaatatcattttgtactgtcaagga Alignment from GeneWise -------------------------------------------------ATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG aagCCTGGTTACAGCCCTTCCTCGCATGCTTCTGCTGTCTGTCAATCCAGGGATGGTTGATTCCTCCATGATCCCAGTTATGGGATATCTGGGCGACCTCCATCATGTCTCCATCTATGGCAGTGTATATGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATAAgtgagaactctgcttgggaacttaaaaatatcattttgtactgtcaagga #### Slc1a1_ID6162_2 --> 2 - 1 Original Alignment gaATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGG---ATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAg gtgaactgaagttcaagactgttttttccaatttctccccttttttttaggcATTGTGCTTGGGCTAGTGGTGCGTGGACGTGGTGGG---------CTTGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCAAGCAAAATAACAggtatgggttgttgaccactgtattacgactttggacatgcatagggggct Alignment from CESAR gaATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATG---AGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAg gtgaactgaagttcaagactgttttttccaatttctccccttttttttaggcATTGTGCTTGGGCTAGTGGTGCGTGGACGTGGTGGGCTT---------GATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCAAGCAAAATAACAggtatgggttgttgaccactgtattacgactttggacatgcatagggggct Alignment from Spaln_aa2Genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATG---AGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG gtgaactgaagttcaagactgttttttccaatttctccccttttttttagGCATTGTGCTTGGGCTAGTGGTGCGTGGACGTGGTGGG---------CTTGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCAAGCAAAATAACAGgtatgggttgttgaccactgtattacgactttggacatgcatagggggct Alignment from Spaln_nt2Genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGA---TGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG gtgaactgaagttcaagactgttttttccaatttctccccttttttttagGCATTGTGCTTGGGCTAGTGGTGCGTGGACGTGGTGGG---------CTTGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCAAGCAAAATAACAGgtatgggttgttgaccactgtattacgactttggacatgcatagggggct Alignment from Pairagon GATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGA---TGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG gtgaactgaagttcaagactgttttttccaatttctccccttttttttaggcattgtgcttgggctagtggtgcgtggacgtggtgggcttGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCAAGCAAAATAACAGgtatgggttgttgaccactgtattacgactttggacatgcatagggggct Alignment from Exonerate_protein2genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATG---AGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG gtgaactgaagttcaagactgttttttccaatttctccccttttttttagGCATTGTGCTTGGGCTAGTGGTGCGTGGACGT---------GGTGGGCTTGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCAAGCAAAATAACAGgtatgggttgttgaccactgtattacgactttggacatgcatagggggct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGG---ATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG gtgaactgaagttcaagactgttttttccaatttctccccttttttttagGCATTGTGCTTGGGCTAGTGGTGCGTGGACGTGGT---------GGGCTTGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCAAGCAAAATAACAGgtatgggttgttgaccactgtattacgactttggacatgcatagggggct #### Slc1a1_ID6168_6 --> 0 - 0 Original Alignment TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAATGTCTGAG tttttaatatctttgtcctgattgcacaacaatgtgacgtccctgctcagTACAAAACCAAGTGGGAACAGGTTAAGCCTGTCAGTGACCCAGGCGGT---ACTACAGAAGTCCCCGTAACTACTGCC---------ATGACTCAAgtgggcgtttgttaggccatccatgtacaaaatgctcaactataacccct Alignment from CESAR TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAATGTCTGAG tttttaatatctttgtcctgattgcacaacaatgtgacgtccctgctcagTACAAAACCAAGTGGGAACAGGTTAAGCCTGTCAGTGACCCAGGCGGT---ACTACAGAAGTCCCCGTAACTACTGCCATGACT---------CAAgtgggcgtttgttaggccatccatgtacaaaatgctcaactataacccct Alignment from Spaln_aa2Genome TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAATGTCT tttttaatatctttgtcctgattgcacaacaatgtgacgtccctgctcagTACAAAACCAAGTGGGAACAGGTTAAGCCTGTCAGTGACCCAGGCGGT---ACTACAGAAGTCCCCGTAACTACTGCCATGACTCAAGTGGGCgtttgttaggccatccatgtacaaaatgctcaactataacccct Alignment from Spaln_nt2Genome TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACA tttttaatatctttgtcctgattgcacaacaatgtgacgtccctgctcagTACAAAACCAAGTGGGAACAGGTTAAGCCTGTCAGTGACCCAGGCGGTA---CTACAGAAGTCCCCGTAACTACTGCCATGACTCAAgtgggcgtttgttaggccatccatgtacaaaatgctcaactataacccct Alignment from Pairagon TACAAAACCAAGCGGGAAGAGGTGAAGCCT tttttaatatctttgtcctgattgcacaacaatgtgacgtccctgctcagTACAAAACCAAGTGGGAACAGGTTAAGCCTgtcagtgacccaggcggtactacagaagtccccgtaactactgccatgactcaagtgggcgtttgttaggccatccatgtacaaaatgctcaactataacccct Alignment from Exonerate_protein2genome TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAATGTCTGAG tttttaatatctttgtcctgattgcacaacaatgtgacgtccctgctcagTACAAAACCAAGTGGGAACAGGTTAAGCCTGTCAGTGACCCAGGCGGT---ACTACAGAAGTCCCCGTAACTACTGCCATGACTCAAGTGGGC---gtttgttaggccatccatgtacaaaatgctcaactataacc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAATGTCTGAG tttttaatatctttgtcctgattgcacaacaatgtgacgtccctgctcagTACAAAACCAAGTGGGAACAGGTTAAGCCTGTCAGTGACCCAGGCGGT---ACTACAGAAGTCCCCGTAACTACTGCCATGACT---------CAAgtgggcgtttgttaggccatccatgtacaaaatgctcaactataacccct #### Slc1a1_ID6170_8 --> 1 - 2 Original Alignment cTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCgg tgtataaaccaaagggacctgggaatcttaaacactgtactcttttacagcTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGTgggtgagttcccgggatttaaggggtgtgacaaccacatatcagaacactat Alignment from CESAR cTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCgg tgtataaaccaaagggacctgggaatcttaaacactgtactcttttacagcTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGTgggtgagttcccgggatttaaggggtgtgacaaccacatatcagaacactat Alignment from Spaln_aa2Genome CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG tgtataaaccaaagggacctgggaatcttaaacactgtactcttttacagCTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGTGGgtgagttcccgggatttaaggggtgtgacaaccacatatcagaacactat Alignment from Spaln_nt2Genome CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG tgtataaaccaaagggacctgggaatcttaaacactgtactcttttacagCTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGTGGgtgagttcccgggatttaaggggtgtgacaaccacatatcagaacactat Alignment from Pairagon CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG tgtataaaccaaagggacctgggaatcttaaacactgtactcttttacagCTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGTGGgtgagttcccgggatttaaggggtgtgacaaccacatatcagaacactat Alignment from Exonerate_protein2genome CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG tgtataaaccaaagggacctgggaatcttaaacactgtactcttttacagCTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGTGGgtgagttcccgggatttaaggggtgtgacaaccacatatcagaacactat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG tgtataaaccaaagggacctgggaatcttaaacactgtactcttttacagCTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGTGGgtgagttcccgggatttaaggggtgtgacaaccacatatcagaacactat #### Slc1a1_ID6172_9 --> 1 - 2 Original Alignment gCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCag tcctacttaaactgtatgcagattggggatactatggacttgctctgtaggCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCATCCaggtaagaatgaagggtgtgttgatatcttatatgagtcatccggtagctgg Alignment from CESAR gCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCag tcctacttaaactgtatgcagattggggatactatggacttgctctgtaggCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCATCCaggtaagaatgaagggtgtgttgatatcttatatgagtcatccggtagctgg Alignment from Spaln_aa2Genome GCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCAG tcctacttaaactgtatgcagattggggatactatggacttgctctgtagGCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCATCCAGgtaagaatgaagggtgtgttgatatcttatatgagtcatccggtagctgg Alignment from Spaln_nt2Genome GCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCAG tcctacttaaactgtatgcagattggggatactatggacttgctctgtagGCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCATCCAGgtaagaatgaagggtgtgttgatatcttatatgagtcatccggtagctgg Alignment from Pairagon GCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCAG tcctacttaaactgtatgcagattggggatactatggacttgctctgtagGCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCATCCAGgtaagaatgaagggtgtgttgatatcttatatgagtcatccggtagctgg Alignment from Exonerate_protein2genome GCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCAG tcctacttaaactgtatgcagattggggatactatggacttgctctgtagGCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCATCCAGgtaagaatgaagggtgtgttgatatcttatatgagtcatccggtagctgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCAG tcctacttaaactgtatgcagattggggatactatggacttgctctgtagGCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCATCCAGgtaagaatgaagggtgtgttgatatcttatatgagtcatccggtagctgg #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tggggcagaagcttgaagtgaaaattgagctctgtccctttcttccttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCTTGTGCCAGTATTAGCACTTTACTCCACACACCTGGTCTACGTCACCGTAGTATTATCTCTATGCTGTGCctgtacggtcatcaatacaatggtttgcaggcaagagcagttccccagttat Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tggggcagaagcttgaagtgaaaattgagctctgtccctttcttccttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCTTGTGCCAGTATTAGCACTTTACTCCACACACCTGGTCTACGTCACCGTAGTATTATCTCTATGCTGTGCctgtacggtcatcaatacaatggtttgcaggcaagagcagttccccagttat Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggggcagaagcttgaagtgaaaattgagctctgtccctttcttccttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCTTGTGCCAGTATTAGCACTTTACTCCACACACCTGGTCTACGTCACCGTAGTATTATCTCTATGCTGTGCCTgtacggtcatcaatacaatggtttgcaggcaagagcagttccccagttat Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggggcagaagcttgaagtgaaaattgagctctgtccctttcttccttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCTTGTGCCAGTATTAGCACTTTACTCCACACACCTGGTCTACGTCACCGTAGTATTATCTCTATGCTGTGCCTgtacggtcatcaatacaatggtttgcaggcaagagcagttccccagttat Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggggcagaagcttgaagtgaaaattgagctctgtccctttcttccttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCTTGTGCCAGTATTAGCACTTTACTCCACACACCTGGTCTACGTCACCGTAGTATTATCTCTATGCTGTGCCTgtacggtcatcaatacaatggtttgcaggcaagagcagttccccagttat Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggggcagaagcttgaagtgaaaattgagctctgtccctttcttccttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCTTGTGCCAGTATTAGCACTTTACTCCACACACCTGGTCTACGTCACCGTAGTATTATCTCTATGCTGTGCCTgtacggtcatcaatacaatggtttgcaggcaagagcagttccccagttat Alignment from Exonerate_coding2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTGGTTT tggggcagaagcttgaagtgaaaattgagctctgtccctttcttccttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCTTGTGCCAGTATTAGCACTTTACTCCACACACCTGGTCTACGTCACCGTAGTATTATCTCTATGCTGTGCCTGTACggtcatcaatacaatggtttgcaggcaagagcagttccccagttat Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggggcagaagcttgaagtgaaaattgagctctgtccctttcttccttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCTTGTGCCAGTATTAGCACTTTACTCCACACACCTGGTCTACGTCACCGTAGTATTATCTCTATGCTGTGCCTgtacggtcatcaatacaatggtttgcaggcaagagcagttccccagttat #### Slc22a12_ID1795_2 --> 0 - 2 Original Alignment TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATag actttgctagactaggggacaactattcctgttgcctctttgttctacagTGGGATCTAGTCCATAACTCCCAGGCCCTGAGGCCAATGACCCAGTCAATAGTGCTGGCTGGAATTTTG------GCTGCAGTTTGTGGCCATGCTGCAGATcggtaaggttcagaaccaagttgaggtagccctatgatttctagagttcccc Alignment from CESAR TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATag actttgctagactaggggacaactattcctgttgcctctttgttctacagTGGGATCTAGTCCATAACTCCCAGGCCCTGAGGCCAATGACCCAGTCAATAGTGCTGGCTGGAATTTTG------GCTGCAGTTTGTGGCCATGCTGCAGATcggtaaggttcagaaccaagttgaggtagccctatgatttctagagttcccc Alignment from Spaln_aa2Genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG actttgctagactaggggacaactattcctgttgcctctttgttctacagTGGGATCTAGTCCATAACTCCCAGGCCCTGAGGCCAATGACCCAGTCAATAGTGCTGGCTGGAATTTTG------GCTGCAGTTTGTGGCCATGCTGCAGATCGgtaaggttcagaaccaagttgaggtagccctatgatttctagagttcccc Alignment from Spaln_nt2Genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG actttgctagactaggggacaactattcctgttgcctctttgttctacagTGGGATCTAGTCCATAACTCCCAGGCCCTGAGGCCAATGACCCAGTCAATAGTGCTGGCTGGAATTTTG------GCTGCAGTTTGTGGCCATGCTGCAGATCGgtaaggttcagaaccaagttgaggtagccctatgatttctagagttcccc Alignment from Pairagon TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG actttgctagactaggggacaactattcctgttgcctctttgttctacagTGGGATCTAGTCCATAACTCCCAGGCCCTGAGGCCAATGACCCAGTCAATAGTGCTGGCTGGAATTTTG------GCTGCAGTTTGTGGCCATGCTGCAGATCGgtaaggttcagaaccaagttgaggtagccctatgatttctagagttcccc Alignment from Exonerate_protein2genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG actttgctagactaggggacaactattcctgttgcctctttgttctacagTGGGATCTAGTCCATAACTCCCAGGCCCTGAGGCCAATGACCCAGTCAATAGTGCTGGCTGGAATTTTG------GCTGCAGTTTGTGGCCATGCTGCAGATCGgtaaggttcagaaccaagttgaggtagccctatgatttctagagttcccc Alignment from Exonerate_coding2genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG actttgctagactaggggacaactattcctgttgcctctttgttctacagTGGGATCTAGTCCATAACTCCCAGGCCCTGAGGCCAATGACCCAGTCAATAGTGCTGGCTGGAATTTTG------GCTGCAGTTTGTGGCCATGCTGCAGATCGgtaaggttcagaaccaagttgaggtagccctatgatttctagagttcccc Alignment from GeneWise TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG actttgctagactaggggacaactattcctgttgcctctttgttctacagTGGGATCTAGTCCATAACTCCCAGGCCCTGAGGCCAATGACCCAGTCAATAGTGCTGGCTGGAATTTTG------GCTGCAGTTTGTGGCCATGCTGCAGATCGgtaaggttcagaaccaagttgaggtagccctatgatttctagagttcccc #### Slc22a19_ID2208_5 --> 1 - 0 Original Alignment gTGGTTGTCAGAGTCAGCTCGATGGCTGATTATGGCCAACAAACCCCAGAAGAGCTTAAAGGAACTTAAAAAAGCTGCATGCGTAAATAGAATAAAGAATTCTGGAGATGCCCTAACCTTGGAG atcaaagtaagtagagcagtgttacccaaggcgtttcttctctctttcaggTGGTTATCAGAGTCAGCAGGGTGGCTT---ATGTCTAACAAACTTCAGAGGACCACAAATGAACTTAGGAAGGCTGCATCTGTGAACAAAATGAAGAATTCCGCAGACACCTTGACTTTGGAGgtactgcttgttttgcacgagatcatttgggttatgggcaagacttctag Alignment from CESAR gTGGTTGTCAGAGTCAGCTCGATGGCTGATTATGGCCAACAAACCCCAGAAGAGCTTAAAGGAACTTAAAAAAGCTGCATGCGTAAATAGAATAAAGAATTCTGGAGATGCCCTAACCTTGGAG atcaaagtaagtagagcagtgttacccaaggcgtttcttctctctttcaggTGGTTATCAGAGTCAGCAGGGTGGCTT---ATGTCTAACAAACTTCAGAGGACCACAAATGAACTTAGGAAGGCTGCATCTGTGAACAAAATGAAGAATTCCGCAGACACCTTGACTTTGGAGgtactgcttgttttgcacgagatcatttgggttatgggcaagacttctag Alignment from Spaln_aa2Genome GTGGTTGTCAGAGTCAGCTCGATGGCTGATTATGGCCAACAAACCCCAGAAGAGCTTAAAGGAACTTAAAAAAGCTGCATGCGTAAATAGAATAAAGAATTCTGGAGATGCCCTAACCTTGGAG atcaaagtaagtagagcagtgttacccaaggcgtttcttctctctttcagGTGGTTATCAGAGTCAGCAGGGTGGCTT---ATGTCTAACAAACTTCAGAGGACCACAAATGAACTTAGGAAGGCTGCATCTGTGAACAAAATGAAGAATTCCGCAGACACCTTGACTTTGGAGgtactgcttgttttgcacgagatcatttgggttatgggcaagacttctag Alignment from Spaln_nt2Genome GTGGTTGTCAGAGTCAGCTCGATGGCTGATTATGGCCAACAAACCCCAGAAGAGCTTAAAGGAACTTAAAAAAGCTGCATGCGTAAATAGAATAAAGAATTCTGGAGATGCCCTAACCTTGGAG atcaaagtaagtagagcagtgttacccaaggcgtttcttctctctttcagGTGGTTATCAGAGTCAGCAGGGTGGC---TTATGTCTAACAAACTTCAGAGGACCACAAATGAACTTAGGAAGGCTGCATCTGTGAACAAAATGAAGAATTCCGCAGACACCTTGACTTTGGAGgtactgcttgttttgcacgagatcatttgggttatgggcaagacttctag Alignment from Pairagon GTGGTTGTCAGAGTCAGCTCGATGGCTGATTATGGCCAACAAACCCCAGAAGAGCTTAAAGGAACTTAAAAAAGCTGCATGCGTAAATAGAATAAAGAATTCTGGAGATGCCCTAACCTTGGAG atcaaagtaagtagagcagtgttacccaaggcgtttcttctctctttcagGTGGTTATCAGAGTCAGCAGGGTGGC---TTATGTCTAACAAACTTCAGAGGACCACAAATGAACTTAGGAAGGCTGCATCTGTGAACAAAATGAAGAATTCCGCAGACACCTTGACTTTGGAGgtactgcttgttttgcacgagatcatttgggttatgggcaagacttctag Alignment from Exonerate_protein2genome GTGGTTGTCAGAGTCAGCTCGATGGCTGATTATGGCCAACAAACCCCAGAAGAGCTTAAAGGAACTTAAAAAAGCTGCATGCGTAAATAGAATAAAGAATTCTGGAGATGCCCTAACCTTGGAG atcaaagtaagtagagcagtgttacccaaggcgtttcttctctctttcagGTGGTTATCAGAGTCAGCAGGGTGGCTT---ATGTCTAACAAACTTCAGAGGACCACAAATGAACTTAGGAAGGCTGCATCTGTGAACAAAATGAAGAATTCCGCAGACACCTTGACTTTGGAGgtactgcttgttttgcacgagatcatttgggttatgggcaagacttctag Alignment from Exonerate_coding2genome GTGGTTGTCAGAGTCAGCTCGATGGCTGATTATGGCCAACAAACCCCAGAAGAGCTTAAAGGAACTTAAAAAAGCTGCATGCGTAAATAGAATAAAGAATTCTGGAGATGCCCTAACCTTGGAG atcaaagtaagtagagcagtgttacccaaggcgtttcttctctctttcagGTGGTTATCAGAGTCAGCAGGGTGGCTT---ATGTCTAACAAACTTCAGAGGACCACAAATGAACTTAGGAAGGCTGCATCTGTGAACAAAATGAAGAATTCCGCAGACACCTTGACTTTGGAGgtactgcttgttttgcacgagatcatttgggttatgggcaagacttctag Alignment from GeneWise GTGGTTGTCAGAGTCAGCTCGATGGCTGATTATGGCCAACAAACCCCAGAAGAGCTTAAAGGAACTTAAAAAAGCTGCATGCGTAAATAGAATAAAGAATTCTGGAGATGCCCTAACCTTGGAG atcaaagtaagtagagcagtgttacccaaggcgtttcttctctctttcagGTGGTTATCAGAGTCAGCAGGGTGGCTT---ATGTCTAACAAACTTCAGAGGACCACAAATGAACTTAGGAAGGCTGCATCTGTGAACAAAATGAAGAATTCCGCAGACACCTTGACTTTGGAGgtactgcttgttttgcacgagatcatttgggttatgggcaagacttctag #### Slc22a19_ID2209_4 --> 2 - 2 Original Alignment taTTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATT------GCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAag ctagtgtaactgttgataaacttaactctgaacttctttcttgagtctagtaTTAAAATGGAAAGGTCCTATGTTTCAAGCTTTAGTAACAGCACTAAAATTTATTGCCTCAGCATCAGGAGGTGGACAGACACTATTGGGAGGTCTAGCTTCTGCTCTCCATAACTGGCATCACCTCCAGTTGGCTCTCTCTGTCCCAATGTTCTTGTTGCTTATACCCACAaggtaagaacctgatatatctccctgcagtgtttgtgttggcacactttcaa Alignment from CESAR taTTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCCTCA------GGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAag ctagtgtaactgttgataaacttaactctgaacttctttcttgagtctagtaTTAAAATGGAAAGGTCCTATGTTTCAAGCTTTAGTAACAGCACTAAAATTTATTGCCTCAGCATCAGGAGGTGGACAGACACTATTGGGAGGTCTAGCTTCTGCTCTCCATAACTGGCATCACCTCCAGTTGGCTCTCTCTGTCCCAATGTTCTTGTTGCTTATACCCACAaggtaagaacctgatatatctccctgcagtgtttgtgttggcacactttcaa Alignment from Spaln_aa2Genome TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATT------GCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG ctagtgtaactgttgataaacttaactctgaacttctttcttgagtctagTATTAAAATGGAAAGGTCCTATGTTTCAAGCTTTAGTAACAGCACTAAAATTTATTGCCTCAGCATCAGGAGGTGGACAGACACTATTGGGAGGTCTAGCTTCTGCTCTCCATAACTGGCATCACCTCCAGTTGGCTCTCTCTGTCCCAATGTTCTTGTTGCTTATACCCACAAGgtaagaacctgatatatctccctgcagtgtttgtgttggcacactttcaa Alignment from Spaln_nt2Genome TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATT------GCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG ctagtgtaactgttgataaacttaactctgaacttctttcttgagtctagTATTAAAATGGAAAGGTCCTATGTTTCAAGCTTTAGTAACAGCACTAAAATTTATTGCCTCAGCATCAGGAGGTGGACAGACACTATTGGGAGGTCTAGCTTCTGCTCTCCATAACTGGCATCACCTCCAGTTGGCTCTCTCTGTCCCAATGTTCTTGTTGCTTATACCCACAAGgtaagaacctgatatatctccctgcagtgtttgtgttggcacactttcaa Alignment from Pairagon TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCC------TCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG ctagtgtaactgttgataaacttaactctgaacttctttcttgagtctagTATTAAAATGGAAAGGTCCTATGTTTCAAGCTTTAGTAACAGCACTAAAATTTATTGCCTCAGCATCAGGAGGTGGACAGACACTATTGGGAGGTCTAGCTTCTGCTCTCCATAACTGGCATCACCTCCAGTTGGCTCTCTCTGTCCCAATGTTCTTGTTGCTTATACCCACAAGgtaagaacctgatatatctccctgcagtgtttgtgttggcacactttcaa Alignment from Exonerate_protein2genome TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATT------GCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG ctagtgtaactgttgataaacttaactctgaacttctttcttgagtctagTATTAAAATGGAAAGGTCCTATGTTTCAAGCTTTAGTAACAGCACTAAAATTTATTGCCTCAGCATCAGGAGGTGGACAGACACTATTGGGAGGTCTAGCTTCTGCTCTCCATAACTGGCATCACCTCCAGTTGGCTCTCTCTGTCCCAATGTTCTTGTTGCTTATACCCACAAGgtaagaacctgatatatctccctgcagtgtttgtgttggcacactttcaa Alignment from Exonerate_coding2genome TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATT------GCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG ctagtgtaactgttgataaacttaactctgaacttctttcttgagtctagTATTAAAATGGAAAGGTCCTATGTTTCAAGCTTTAGTAACAGCACTAAAATTTATTGCCTCAGCATCAGGAGGTGGACAGACACTATTGGGAGGTCTAGCTTCTGCTCTCCATAACTGGCATCACCTCCAGTTGGCTCTCTCTGTCCCAATGTTCTTGTTGCTTATACCCACAAGgtaagaacctgatatatctccctgcagtgtttgtgttggcacactttcaa Alignment from GeneWise TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCCTCA------GGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG ctagtgtaactgttgataaacttaactctgaacttctttcttgagtctagTATTAAAATGGAAAGGTCCTATGTTTCAAGCTTTAGTAACAGCACTAAAATTTATTGCCTCAGCATCAGGAGGTGGACAGACACTATTGGGAGGTCTAGCTTCTGCTCTCCATAACTGGCATCACCTCCAGTTGGCTCTCTCTGTCCCAATGTTCTTGTTGCTTATACCCACAAGgtaagaacctgatatatctccctgcagtgtttgtgttggcacactttcaa #### Slc22a19_ID2210_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCa gattatcaaaatgccttaaaccacacatctgagttctgtgactgtcacaggTTTGGG------CTTATTTTCACTTGTGCATTACTGAGAATGGCAATCACTGGAAATTGTGTTGCATTTGTTCCCTCATTTCTGATTTACTGCTCTCTTAGATTTCTGTCAGGCATTTTTTTTTCAACCCTGAAAACAAATAGTGCTCTACGCagtaggatagagaggaggttttcctacaggtagatggtagttaggttctat Alignment from CESAR gTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCa gattatcaaaatgccttaaaccacacatctgagttctgtgactgtcacaggTTTGGG------CTTATTTTCACTTGTGCATTACTGAGAATGGCAATCACTGGAAATTGTGTTGCATTTGTTCCCTCATTTCTGATTTACTGCTCTCTTAGATTTCTGTCAGGCATTTTTTTTTCAACCCTGAAAACAAATAGTGCTCTACGCagtaggatagagaggaggttttcctacaggtagatggtagttaggttctat Alignment from Spaln_aa2Genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA gattatcaaaatgccttaaaccacacatctgagttctgtgactgtcacagGTTTGGG------CTTATTTTCACTTGTGCATTACTGAGAATGGCAATCACTGGAAATTGTGTTGCATTTGTTCCCTCATTTCTGATTTACTGCTCTCTTAGATTTCTGTCAGGCATTTTTTTTTCAACCCTGAAAACAAATAGTGCTCTACGCAgtaggatagagaggaggttttcctacaggtagatggtagttaggttctat Alignment from Spaln_nt2Genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA gattatcaaaatgccttaaaccacacatctgagttctgtgactgtcacagGTTTGG------GCTTATTTTCACTTGTGCATTACTGAGAATGGCAATCACTGGAAATTGTGTTGCATTTGTTCCCTCATTTCTGATTTACTGCTCTCTTAGATTTCTGTCAGGCATTTTTTTTTCAACCCTGAAAACAAATAGTGCTCTACGCAgtaggatagagaggaggttttcctacaggtagatggtagttaggttctat Alignment from Pairagon GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA gattatcaaaatgccttaaaccacacatctgagttctgtgactgtcacagGTTTGG------GCTTATTTTCACTTGTGCATTACTGAGAATGGCAATCACTGGAAATTGTGTTGCATTTGTTCCCTCATTTCTGATTTACTGCTCTCTTAGATTTCTGTCAGGCATTTTTTTTTCAACCCTGAAAACAAATAGTGCTCTACGCAgtaggatagagaggaggttttcctacaggtagatggtagttaggttctat Alignment from Exonerate_protein2genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA gattatcaaaatgccttaaaccacacatctgagttctgtgactgtcacagGTTTGGG------CTTATTTTCACTTGTGCATTACTGAGAATGGCAATCACTGGAAATTGTGTTGCATTTGTTCCCTCATTTCTGATTTACTGCTCTCTTAGATTTCTGTCAGGCATTTTTTTTTCAACCCTGAAAACAAATAGTGCTCTACGCAgtaggatagagaggaggttttcctacaggtagatggtagttaggttctat Alignment from Exonerate_coding2genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA gattatcaaaatgccttaaaccacacatctgagttctgtgactgtcacagGTTTGGG------CTTATTTTCACTTGTGCATTACTGAGAATGGCAATCACTGGAAATTGTGTTGCATTTGTTCCCTCATTTCTGATTTACTGCTCTCTTAGATTTCTGTCAGGCATTTTTTTTTCAACCCTGAAAACAAATAGTGCTCTACGCAgtaggatagagaggaggttttcctacaggtagatggtagttaggttctat Alignment from GeneWise GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA gattatcaaaatgccttaaaccacacatctgagttctgtgactgtcacagGTTTGGG------CTTATTTTCACTTGTGCATTACTGAGAATGGCAATCACTGGAAATTGTGTTGCATTTGTTCCCTCATTTCTGATTTACTGCTCTCTTAGATTTCTGTCAGGCATTTTTTTTTCAACCCTGAAAACAAATAGTGCTCTACGCAgtaggatagagaggaggttttcctacaggtagatggtagttaggttctat #### Slc22a19_ID2211_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACaa tgctcattatgatgtctaatttcatcagacaccagctcctgcctttgcagTGGTATGTGGTGTGTGGAGCCCACCCACTCAACTCAGTT---AAACTCATATACATGACCGGTATTTTTATAGGATATATCATGAGTGGCCACCTTTTGGACaagtaacaaccttaagaacatccatcttatttgtgtcttgaactatcctcca Alignment from CESAR TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACaa tgctcattatgatgtctaatttcatcagacaccagctcctgcctttgcagTGGTATGTGGTGTGTGGAGCCCACCCACTCAACTCAGTT---AAACTCATATACATGACCGGTATTTTTATAGGATATATCATGAGTGGCCACCTTTTGGACaagtaacaaccttaagaacatccatcttatttgtgtcttgaactatcctcca Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tgctcattatgatgtctaatttcatcagacaccagctcctgcctttgcagTGGTATGTGGTGTGTGGAGCCCACCCACTCAACTCAGTT---AAACTCATATACATGACCGGTATTTTTATAGGATATATCATGAGTGGCCACCTTTTGGACAAgtaacaaccttaagaacatccatcttatttgtgtcttgaactatcctcca Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tgctcattatgatgtctaatttcatcagacaccagctcctgcctttgcagTGGTATGTGGTGTGTGGAGCCCACCCACTCAACTCAGT---TAAACTCATATACATGACCGGTATTTTTATAGGATATATCATGAGTGGCCACCTTTTGGACAAgtaacaaccttaagaacatccatcttatttgtgtcttgaactatcctcca Alignment from Pairagon TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tgctcattatgatgtctaatttcatcagacaccagctcctgcctttgcagTGGTATGTGGTGTGTGGAGCCCACCCACTCAACTCAGT---TAAACTCATATACATGACCGGTATTTTTATAGGATATATCATGAGTGGCCACCTTTTGGACAAgtaacaaccttaagaacatccatcttatttgtgtcttgaactatcctcca Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tgctcattatgatgtctaatttcatcagacaccagctcctgcctttgcagTGGTATGTGGTGTGTGGAGCCCACCCACTCAACTCAGTT---AAACTCATATACATGACCGGTATTTTTATAGGATATATCATGAGTGGCCACCTTTTGGACAAgtaacaaccttaagaacatccatcttatttgtgtcttgaactatcctcca Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tgctcattatgatgtctaatttcatcagacaccagctcctgcctttgcagTGGTATGTGGTGTGTGGAGCCCACCCACTCAACTCAGTT---AAACTCATATACATGACCGGTATTTTTATAGGATATATCATGAGTGGCCACCTTTTGGACAAgtaacaaccttaagaacatccatcttatttgtgtcttgaactatcctcca Alignment from GeneWise TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tgctcattatgatgtctaatttcatcagacaccagctcctgcctttgcagTGGTATGTGGTGTGTGGAGCCCACCCACTCAACTCAGTT---AAACTCATATACATGACCGGTATTTTTATAGGATATATCATGAGTGGCCACCTTTTGGACAAgtaacaaccttaagaacatccatcttatttgtgtcttgaactatcctcca #### Slc22a20_ID1348_5 --> 1 - 0 Original Alignment gTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAA---GGGGAGAGGCTGACTACAGAG agaacctgtctctatcagtagacaccaatctcctctggcctttgtattaggTGGATTCCAGAAACATCCCAGTGGCTA------------------CAA---GTTGTGCAGACCCTTCAAAAGGTAGCGATAATGAATGCCAGGAAACCAGAAGTTGCAGAGAGGCTGACCGCAGAAgtaagagggaaggtagcaggccagagcttaggcaatgaggcactgacaat Alignment from CESAR gTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAA---GGGGAGAGGCTGACTACAGAG agaacctgtctctatcagtagacaccaatctcctctggcctttgtattaggTGGATTCCAGAAACATCCCAGTGGCTA---------------------CAAGTTGTGCAGACCCTTCAAAAGGTAGCGATAATGAATGCCAGGAAACCAGAAGTTGCAGAGAGGCTGACCGCAGAAgtaagagggaaggtagcaggccagagcttaggcaatgaggcactgacaat Alignment from Spaln_aa2Genome GTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAA---GGGGAGAGGCTGACTACAGAG agaacctgtctctatcagtagacaccaatctcctctggcctttgtattagGTGGATTCCAGAAACATCCCAGTGGCTA---------------------CAAGTTGTGCAGACCCTTCAAAAGGTAGCGATAATGAATGCCAGGAAACCAGAAGTTGCAGAGAGGCTGACCGCAGAAgtaagagggaaggtagcaggccagagcttaggcaatgaggcactgacaat Alignment from Spaln_nt2Genome GTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAAGGGG---AGAGGCTGACTACAGAG agaacctgtctctatcagtagacaccaatctcctctggcctttgtattagGTGGATTCCAGAAACATCCCAGTGGCT---------------------ACAAGTTGTGCAGACCCTTCAAAAGGTAGCGATAATGAATGCCAGGAAACCAGAAGTTGCAGAGAGGCTGACCGCAGAAgtaagagggaaggtagcaggccagagcttaggcaatgaggcactgacaat Alignment from Pairagon GTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAA---GGGGAGAGGCTGACTACAGAG agaacctgtctctatcagtagacaccaatctcctctggcctttgtattagGTGGATTCCAGAAACATCCCAGTGGCT---------------------ACAAGTTGTGCAGACCCTTCAAAAGGTAGCGATAATGAATGCCAGGAAACCAGAAGTTGCAGAGAGGCTGACCGCAGAAgtaagagggaaggtagcaggccagagcttaggcaatgaggcactgacaat Alignment from Exonerate_protein2genome ATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAA---GGGGAGAGGCTGACTACAGAGGTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGC agaacctgtctctatcagtagacaccaatctcctctggcctttgTATTAGGTGGATTCCAGAAACATCCCAGTGGCTACAAGTTGTGCAGACCCTTCAAAAGGTAGCGATAATGAATGCCAGGAAACCAGAAGTTGCAGAGAGGCTGACCGCAGAAGTAAGAGGGAAGGTAGCAGGCCAGAGCTTAGGCAATGAGGCActgacaat Alignment from Exonerate_coding2genome ATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAA---GGGGAGAGGCTGACTACAGAGGTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGC agaacctgtctctatcagtagacaccaatctcctctggcctttgTATTAGGTGGATTCCAGAAACATCCCAGTGGCTACAAGTTGTGCAGACCCTTCAAAAGGTAGCGATAATGAATGCCAGGAAACCAGAAGTTGCAGAGAGGCTGACCGCAGAAGTAAGAGGGAAGGTAGCAGGCCAGAGCTTAGGCAATGAGGCActgacaat Alignment from GeneWise GTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAA---GGGGAGAGGCTGACTACAGAG agaacctgtctctatcagtagacaccaatctcctctggcctttgtattagGTGGATTCCAGAAACATCCCAGTGGCTA---------------------CAAGTTGTGCAGACCCTTCAAAAGGTAGCGATAATGAATGCCAGGAAACCAGAAGTTGCAGAGAGGCTGACCGCAGAAgtaagagggaaggtagcaggccagagcttaggcaatgaggcactgacaat #### Slc22a26_ID2216_9 --> 1 - 2 Original Alignment gGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTgg ctggtgacacagacagtggtggatgaggggtattctttctcttctttcaggGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTTGGAGCAGCCTTGTCTCCTCTCATCATGATACTCACATTGTACTCAGCATCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTCCTCCCATTAATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAGTGTgggtaagttatgcggcctgcccagtatacatacagaagggacaatagaatgt Alignment from CESAR gGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTgg ctggtgacacagacagtggtggatgaggggtattctttctcttctttcaggGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTTGGAGCAGCCTTGTCTCCTCTCATCATGATACTCACATTGTACTCAGCATCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTCCTCCCATTAATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAGTGTgggtaagttatgcggcctgcccagtatacatacagaagggacaatagaatgt Alignment from Spaln_aa2Genome -GCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG ctggtgacacagacagtggtggatgaggggtattctttctcttctttcagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTTGGAGCAGCCTTGTCTCCTCTCATCATGATACTCACATTGTACTCAGCATCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTCCTCCCATTAATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAGTGTGGgtaagttatgcggcctgcccagtatacatacagaagggacaatagaatgt Alignment from Spaln_nt2Genome GGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG ctggtgacacagacagtggtggatgaggggtattctttctcttctttcagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTTGGAGCAGCCTTGTCTCCTCTCATCATGATACTCACATTGTACTCAGCATCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTCCTCCCATTAATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAGTGTGGgtaagttatgcggcctgcccagtatacatacagaagggacaatagaatgt Alignment from Pairagon GGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG ctggtgacacagacagtggtggatgaggggtattctttctcttctttcagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTTGGAGCAGCCTTGTCTCCTCTCATCATGATACTCACATTGTACTCAGCATCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTCCTCCCATTAATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAGTGTGGgtaagttatgcggcctgcccagtatacatacagaagggacaatagaatgt Alignment from Exonerate_protein2genome GGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG ctggtgacacagacagtggtggatgaggggtattctttctcttctttcagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTTGGAGCAGCCTTGTCTCCTCTCATCATGATACTCACATTGTACTCAGCATCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTCCTCCCATTAATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAGTGTGGgtaagttatgcggcctgcccagtatacatacagaagggacaatagaatgt Alignment from Exonerate_coding2genome GGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG ctggtgacacagacagtggtggatgaggggtattctttctcttctttcagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTTGGAGCAGCCTTGTCTCCTCTCATCATGATACTCACATTGTACTCAGCATCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTCCTCCCATTAATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAGTGTGGgtaagttatgcggcctgcccagtatacatacagaagggacaatagaatgt Alignment from GeneWise -GCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGGG ctggtgacacagacagtggtggatgaggggtattctttctcttctttcagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTTGGAGCAGCCTTGTCTCCTCTCATCATGATACTCACATTGTACTCAGCATCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTCCTCCCATTAATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAGTGTGGGtaagttatgcggcctgcccagtatacatacagaagggacaatagaatgt #### Slc22a26_ID2220_5 --> 1 - 0 Original Alignment gTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tgacatttggcactgctgaatgaacgagcagtgatcctgctttgttttaggTGGTTGACAGAATCAGCTCAGTGGCTAATCGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtgagttgtgttgttagcacaagaaatggggtatagaaacttcaactccc Alignment from CESAR gTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tgacatttggcactgctgaatgaacgagcagtgatcctgctttgttttaggTGGTTGACAGAATCAGCTCAGTGGCTAATCGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtgagttgtgttgttagcacaagaaatggggtatagaaacttcaactccc Alignment from Spaln_aa2Genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tgacatttggcactgctgaatgaacgagcagtgatcctgctttgttttagGTGGTTGACAGAATCAGCTCAGTGGCTAATCGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtgagttgtgttgttagcacaagaaatggggtatagaaacttcaactccc Alignment from Spaln_nt2Genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tgacatttggcactgctgaatgaacgagcagtgatcctgctttgttttagGTGGTTGACAGAATCAGCTCAGTGGCTAATCGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtgagttgtgttgttagcacaagaaatggggtatagaaacttcaactccc Alignment from Pairagon GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tgacatttggcactgctgaatgaacgagcagtgatcctgctttgttttagGTGGTTGACAGAATCAGCTCAGTGGCTAATCGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtgagttgtgttgttagcacaagaaatggggtatagaaacttcaactccc Alignment from Exonerate_protein2genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tgacatttggcactgctgaatgaacgagcagtgatcctgctttgttttagGTGGTTGACAGAATCAGCTCAGTGGCTAATCGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtgagttgtgttgttagcacaagaaatggggtatagaaacttcaactccc Alignment from Exonerate_coding2genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tgacatttggcactgctgaatgaacgagcagtgatcctgctttgttttagGTGGTTGACAGAATCAGCTCAGTGGCTAATCGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtgagttgtgttgttagcacaagaaatggggtatagaaacttcaactccc Alignment from GeneWise GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tgacatttggcactgctgaatgaacgagcagtgatcctgctttgttttagGTGGTTGACAGAATCAGCTCAGTGGCTAATCGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtgagttgtgttgttagcacaagaaatggggtatagaaacttcaactccc #### Slc22a26_ID2222_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCa tttttgttactgttactaggtgatctataaattttcttcttctattacagaTTTAGC---AAATTACTCTTCAGGTGTGGCTTATTGCAAATGGCTATTGCTGGGACATGTACAGTCTCAGAACCATCCTTCTTCATCTGTTGCTTACTACGTTGTCTGACAGGGATCTGCATTATACCTATTAATATAAACAGTGTCTTGCTGagtaaccaaaaactttgacactattaaacccccctttaagtgttttgtttt Alignment from CESAR gTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCa tttttgttactgttactaggtgatctataaattttcttcttctattacagaTTTAGC---AAATTACTCTTCAGGTGTGGCTTATTGCAAATGGCTATTGCTGGGACATGTACAGTCTCAGAACCATCCTTCTTCATCTGTTGCTTACTACGTTGTCTGACAGGGATCTGCATTATACCTATTAATATAAACAGTGTCTTGCTGagtaaccaaaaactttgacactattaaacccccctttaagagcatggtttt Alignment from Spaln_aa2Genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tttttgttactgttactaggtgatctataaattttcttcttctattacagATTTAGC---AAATTACTCTTCAGGTGTGGCTTATTGCAAATGGCTATTGCTGGGACATGTACAGTCTCAGAACCATCCTTCTTCATCTGTTGCTTACTACGTTGTCTGACAGGGATCTGCATTATACCTATTAATATAAACAGTGTCTTGCTGAgtaaccaaaaactttgacactattaaacccccctttaagtgttttgtttt Alignment from Spaln_nt2Genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tttttgttactgttactaggtgatctataaattttcttcttctattacagATTT---AGCAAATTACTCTTCAGGTGTGGCTTATTGCAAATGGCTATTGCTGGGACATGTACAGTCTCAGAACCATCCTTCTTCATCTGTTGCTTACTACGTTGTCTGACAGGGATCTGCATTATACCTATTAATATAAACAGTGTCTTGCTGAgtaaccaaaaactttgacactattaaacccccctttaagtgttttgtttt Alignment from Pairagon GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tttttgttactgttactaggtgatctataaattttcttcttctattacagATTT---AGCAAATTACTCTTCAGGTGTGGCTTATTGCAAATGGCTATTGCTGGGACATGTACAGTCTCAGAACCATCCTTCTTCATCTGTTGCTTACTACGTTGTCTGACAGGGATCTGCATTATACCTATTAATATAAACAGTGTCTTGCTGAgtaaccaaaaactttgacactattaaacccccctttaagtgttttgtttt Alignment from Exonerate_protein2genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tttttgttactgttactaggtgatctataaattttcttcttctattacagATTTAGC---AAATTACTCTTCAGGTGTGGCTTATTGCAAATGGCTATTGCTGGGACATGTACAGTCTCAGAACCATCCTTCTTCATCTGTTGCTTACTACGTTGTCTGACAGGGATCTGCATTATACCTATTAATATAAACAGTGTCTTGCTGAgtaaccaaaaactttgacactattaaacccccctttaagtgttttgtttt Alignment from Exonerate_coding2genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tttttgttactgttactaggtgatctataaattttcttcttctattacagATTTAGC---AAATTACTCTTCAGGTGTGGCTTATTGCAAATGGCTATTGCTGGGACATGTACAGTCTCAGAACCATCCTTCTTCATCTGTTGCTTACTACGTTGTCTGACAGGGATCTGCATTATACCTATTAATATAAACAGTGTCTTGCTGAgtaaccaaaaactttgacactattaaacccccctttaagtgttttgtttt Alignment from GeneWise GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tttttgttactgttactaggtgatctataaattttcttcttctattacagATTTAGC---AAATTACTCTTCAGGTGTGGCTTATTGCAAATGGCTATTGCTGGGACATGTACAGTCTCAGAACCATCCTTCTTCATCTGTTGCTTACTACGTTGTCTGACAGGGATCTGCATTATACCTATTAATATAAACAGTGTCTTGCTGAgtaaccaaaaactttgacactattaaacccccctttaagtgttttgtttt #### Slc22a27_ID2231_7 --> 1 - 1 Original Alignment aCTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAg gatcatgtaaaatggtgctaaatctgtgactagtcctggatccttttcagaCTTTTATTTACAGTATCAATATTTGGTGTTGCAGTCCATCTCCAATACTTAAGTTCTAATATCATCCTACTGCAGTTTCTCACTAGTGCATTAGCCATACTAGTTGGTGTCATTGGATCATTTGTGGTTAACCACATTGGTCGTCGAGTCACCTACCTAGTTCTCACCTCCTTGAGGAGTACCTACATTCTTATTGCTGTATTTGTACCACAGagtagggaatgagtcactgcatgaagaagggttctaatcaggcgggactga Alignment from CESAR aCTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAg gatcatgtaaaatggtgctaaatctgtgactagtcctggatccttttcagaCTTTTATTTACAGTATCAATATTTGGTGTTGCAGTCCATCTCCAATACTTAAGTTCTAATATCATCCTACTGCAGTTTCTCACTAGTGCATTAGCCATACTAGTTGGTGTCATTGGATCATTTGTGGTTAACCACATTGGTCGTCGAGTCACCTACCTAGTTCTCACCTCCTTGAGGAGTACCTACATTCTTATTGCTGTATTTGTACCACAGagtagggaatgagtcactgcatgaagaagggttctaatcaggcgggactga Alignment from Spaln_aa2Genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG gatcatgtaaaatggtgctaaatctgtgactagtcctggatccttttcagACTTTTATTTACAGTATCAATATTTGGTGTTGCAGTCCATCTCCAATACTTAAGTTCTAATATCATCCTACTGCAGTTTCTCACTAGTGCATTAGCCATACTAGTTGGTGTCATTGGATCATTTGTGGTTAACCACATTGGTCGTCGAGTCACCTACCTAGTTCTCACCTCCTTGAGGAGTACCTACATTCTTATTGCTGTATTTGTACCACAGAgtagggaatgagtcactgcatgaagaagggttctaatcaggcgggactga Alignment from Spaln_nt2Genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG gatcatgtaaaatggtgctaaatctgtgactagtcctggatccttttcagACTTTTATTTACAGTATCAATATTTGGTGTTGCAGTCCATCTCCAATACTTAAGTTCTAATATCATCCTACTGCAGTTTCTCACTAGTGCATTAGCCATACTAGTTGGTGTCATTGGATCATTTGTGGTTAACCACATTGGTCGTCGAGTCACCTACCTAGTTCTCACCTCCTTGAGGAGTACCTACATTCTTATTGCTGTATTTGTACCACAGAgtagggaatgagtcactgcatgaagaagggttctaatcaggcgggactga Alignment from Pairagon ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG gatcatgtaaaatggtgctaaatctgtgactagtcctggatccttttcagACTTTTATTTACAGTATCAATATTTGGTGTTGCAGTCCATCTCCAATACTTAAGTTCTAATATCATCCTACTGCAGTTTCTCACTAGTGCATTAGCCATACTAGTTGGTGTCATTGGATCATTTGTGGTTAACCACATTGGTCGTCGAGTCACCTACCTAGTTCTCACCTCCTTGAGGAGTACCTACATTCTTATTGCTGTATTTGTACCACAGAgtagggaatgagtcactgcatgaagaagggttctaatcaggcgggactga Alignment from Exonerate_protein2genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG gatcatgtaaaatggtgctaaatctgtgactagtcctggatccttttcagACTTTTATTTACAGTATCAATATTTGGTGTTGCAGTCCATCTCCAATACTTAAGTTCTAATATCATCCTACTGCAGTTTCTCACTAGTGCATTAGCCATACTAGTTGGTGTCATTGGATCATTTGTGGTTAACCACATTGGTCGTCGAGTCACCTACCTAGTTCTCACCTCCTTGAGGAGTACCTACATTCTTATTGCTGTATTTGTACCACAGAgtagggaatgagtcactgcatgaagaagggttctaatcaggcgggactga Alignment from Exonerate_coding2genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG gatcatgtaaaatggtgctaaatctgtgactagtcctggatccttttcagACTTTTATTTACAGTATCAATATTTGGTGTTGCAGTCCATCTCCAATACTTAAGTTCTAATATCATCCTACTGCAGTTTCTCACTAGTGCATTAGCCATACTAGTTGGTGTCATTGGATCATTTGTGGTTAACCACATTGGTCGTCGAGTCACCTACCTAGTTCTCACCTCCTTGAGGAGTACCTACATTCTTATTGCTGTATTTGTACCACAGAgtagggaatgagtcactgcatgaagaagggttctaatcaggcgggactga Alignment from GeneWise ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG gatcatgtaaaatggtgctaaatctgtgactagtcctggatccttttcagACTTTTATTTACAGTATCAATATTTGGTGTTGCAGTCCATCTCCAATACTTAAGTTCTAATATCATCCTACTGCAGTTTCTCACTAGTGCATTAGCCATACTAGTTGGTGTCATTGGATCATTTGTGGTTAACCACATTGGTCGTCGAGTCACCTACCTAGTTCTCACCTCCTTGAGGAGTACCTACATTCTTATTGCTGTATTTGTACCACAGAgtagggaatgagtcactgcatgaagaagggttctaatcaggcgggactga #### Slc22a28_ID2242_9 --> 1 - 2 Original Alignment gGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATga agagccttcttacagtcatacttatgttaccccacctacctgccccacagaGTAACAGGTATGGGAGAGATTGGGATTTTTGGCAACAGTGGTGTA---TTGGCTCCTCTGTTCATGCTATTGGCAACTTATGCAGCAAACTTATCTTGGATTTTCTATGGAGGGTTTTCAAGACTT---GGCTTTAGTGTGTTCCTCCTACCAGAAACCAAGAATCAGCCCATACCGGATGCCATCCATGACATTGGGAATgagtaagatgatcctcctggtctcattagagtttattgagccttgttccctg Alignment from CESAR gGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATga agagccttcttacagtcatacttatgttaccccacctacctgccccacagaGTAACAGGTATGGGAGAGATTGGGATTTTTGGCAACAGTGGTGTA---TTGGCTCCTCTGTTCATGCTATTGGCAACTTATGCAGCAAACTTATCTTGGATTTTCTATGGAGGGTTTTCAAGACTT---GGCTTTAGTGTGTTCCTCCTACCAGAAACCAAGAATCAGCCCATACCGGATGCCATCCATGACATTGGGAATgagtaagatgatcctcctggtctcattagagtttattgagccttgttccctg Alignment from Spaln_aa2Genome GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA agagccttcttacagtcatacttatgttaccccacctacctgccccacagAGTAACAGGTATGGGAGAGATTGGGATTTTTGGCAACAGTGGTGTA---TTGGCTCCTCTGTTCATGCTATTGGCAACTTATGCAGCAAACTTATCTTGGATTTTCTATGGAGGGTTTTCAAGACTT---GGCTTTAGTGTGTTCCTCCTACCAGAAACCAAGAATCAGCCCATACCGGATGCCATCCATGACATTGGGAATGAgtaagatgatcctcctggtctcattagagtttattgagccttgttccctg Alignment from Spaln_nt2Genome GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA agagccttcttacagtcatacttatgttaccccacctacctgccccacagAGTAACAGGTATGGGAGAGATTGGGATTTTTGGCAACAGTGGTGTAT---TGGCTCCTCTGTTCATGCTATTGGCAACTTATGCAGCAAACTTATCTTGGATTTTCTATGGAGGGTTTTCAAGACT---TGGCTTTAGTGTGTTCCTCCTACCAGAAACCAAGAATCAGCCCATACCGGATGCCATCCATGACATTGGGAATGAgtaagatgatcctcctggtctcattagagtttattgagccttgttccctg Alignment from Pairagon GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA agagccttcttacagtcatacttatgttaccccacctacctgccccacagAGTAACAGGTATGGGAGAGATTGGGATTTTTGGCAACAGTGGTGTAT---TGGCTCCTCTGTTCATGCTATTGGCAACTTATGCAGCAAACTTATCTTGGATTTTCTATGGAGGGTTTTCAAGACT---TGGCTTTAGTGTGTTCCTCCTACCAGAAACCAAGAATCAGCCCATACCGGATGCCATCCATGACATTGGGAATGAgtaagatgatcctcctggtctcattagagtttattgagccttgttccctg Alignment from Exonerate_protein2genome GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA agagccttcttacagtcatacttatgttaccccacctacctgccccacagAGTAACAGGTATGGGAGAGATTGGGATTTTTGGCAACAGTGGTGTA---TTGGCTCCTCTGTTCATGCTATTGGCAACTTATGCAGCAAACTTATCTTGGATTTTCTATGGAGGGTTTTCAAGACTT---GGCTTTAGTGTGTTCCTCCTACCAGAAACCAAGAATCAGCCCATACCGGATGCCATCCATGACATTGGGAATGAgtaagatgatcctcctggtctcattagagtttattgagccttgttccctg Alignment from Exonerate_coding2genome GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA agagccttcttacagtcatacttatgttaccccacctacctgccccacagAGTAACAGGTATGGGAGAGATTGGGATTTTTGGCAACAGTGGTGTA---TTGGCTCCTCTGTTCATGCTATTGGCAACTTATGCAGCAAACTTATCTTGGATTTTCTATGGAGGGTTTTCAAGACTT---GGCTTTAGTGTGTTCCTCCTACCAGAAACCAAGAATCAGCCCATACCGGATGCCATCCATGACATTGGGAATGAgtaagatgatcctcctggtctcattagagtttattgagccttgttccctg Alignment from GeneWise GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGAT agagccttcttacagtcatacttatgttaccccacctacctgccccacagAGTAACAGGTATGGGAGAGATTGGGATTTTTGGCAACAGTGGTGTA---TTGGCTCCTCTGTTCATGCTATTGGCAACTTATGCAGCAAACTTATCTTGGATTTTCTATGGAGGGTTTTCAAGACTT---GGCTTTAGTGTGTTCCTCCTACCAGAAACCAAGAATCAGCCCATACCGGATGCCATCCATGACATTGGGAATGAGtaagatgatcctcctggtctcattagagtttattgagccttgttccctg #### Slc22a28_ID2245_6 --> 0 - 2 Original Alignment GTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAGAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATCTTACGAAATCGGATATGTGTCCTGTCCTTTATGag ctgtagcaaatagcagcctttaaacaattctgtcttgcctgcctcaacagGCTGTGGAAGCAACCATGAAGAATGAATTTGAGGCAGCCAAAAGAAAATCT------AGAGATGTGTTCCATACCCCTATTCTACCGAAT---CCATGCATGTTGTCCTTTATGaggtaggcaggctcattttgttctcacagttaggatgctgatcttggttggc Alignment from CESAR GTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAGAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATCTTACGAAATCGGATATGTGTCCTGTCCTTTATGag ctgtagcaaatagcagcctttaaacaattctgtcttgcctgcctcaacagGCTGTGGAAGCAACCATGAAGAATGAATTTGAGGCAGCCAAAAGAAAATCT------AGAGATGTGTTCCATACCCCTATTCTACCGAATCCA---TGCATGTTGTCCTTTATGaggtaggcaggctcattttgttctcacagttaggatgctgatcttggttggc Alignment from Spaln_aa2Genome GTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAGAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATCTTACGAAATCGGATATGTGTCCTGTCCTTTATGAG ctgtagcaaatagcagcctttaaacaattctgtcttgcctgcctcaacagGCTGTGGAAGCAACCATGAAGAATGAATTTGAGGCAGCCAAAAGAAAATCT------AGAGATGTGTTCCATACCCCTATTCTACCGAATCCA---TGCATGTTGTCCTTTATGAGgtaggcaggctcattttgttctcacagttaggatgctgatcttggttggc Alignment from Spaln_nt2Genome GTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAGAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATCTTACGAAATCGGATATGTGTCCTGTCCTTTATGAG ctgtagcaaatagcagcctttaaacaattctgtcttgcctgcctcaacagGCTGTGGAAGCAACCATGAAGAATGAATTTGAGGCAGCCAAAAGAAAATCT------AGAGATGTGTTCCATACCCCTATTCTACCGAATC---CATGCATGTTGTCCTTTATGAGgtaggcaggctcattttgttctcacagttaggatgctgatcttggttggc Alignment from Pairagon GTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAGAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATCTTACGAAATCGGATATGTGTCCTGTCCTTTATGAG ctgtagcaaatagcagcctttaaacaattctgtcttgcctgcctcaacagGCTGTGGAAGCAACCATGAAGAATGAATTTGAGGCAGCCAAAAGAAAATCT------AGAGATGTGTTCCATACCCCTATTCTACCGAATC---CATGCATGTTGTCCTTTATGAGgtaggcaggctcattttgttctcacagttaggatgctgatcttggttggc Alignment from Exonerate_protein2genome GTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAGAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATCTTACGAAATCGGATATGTGTCCTGTCCTTTATGAG ctgtagcaaatagcagcctttaaacaattctgtcttgcctgcctcaacagGCTGTGGAAGCAACCATGAAGAATGAATTTGAGGCAGCCAAAAGAAAATCT------AGAGATGTGTTCCATACCCCTATTCTACCGAATCCA---TGCATGTTGTCCTTTATGAGgtaggcaggctcattttgttctcacagttaggatgctgatcttggttggc Alignment from Exonerate_coding2genome GTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAGAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATCTTACGAAATCGGATATGTGTCCTGTCCTTTATGAG ctgtagcaaatagcagcctttaaacaattctgtcttgcctgcctcaacagGCTGTGGAAGCAACCATGAAGAATGAATTTGAGGCAGCCAAAAGAAAATCT------AGAGATGTGTTCCATACCCCTATTCTACCGAATCCA---TGCATGTTGTCCTTTATGAGgtaggcaggctcattttgttctcacagttaggatgctgatcttggttggc Alignment from GeneWise GTTGTGGAAGCAAGTATGAAGAATGAACTTGAGGCAGCAAAGAGAAAATCTTCTCCAAGAGACTTGTTCCACACACCCATCTTACGAAATCGGATATGTGTCCTGTCCTTTATGAG ctgtagcaaatagcagcctttaaacaattctgtcttgcctgcctcaacagGCTGTGGAAGCAACCATGAAGAATGAATTTGAGGCAGCCAAAAGAAAATCT------AGAGATGTGTTCCATACCCCTATTCTACCGAATCCA---TGCATGTTGTCCTTTATGAGgtaggcaggctcattttgttctcacagttaggatgctgatcttggttggc #### Slc22a28_ID2247_4 --> 2 - 2 Original Alignment ttTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAag tgatcttccttttcaaagcccttctggctattattatttttacatttcagtgTTAGAATGGGCAAACCCAAAATTCCTTGGTATGGTGGCAGTTCTTACTGATTGTGCTGTAAGTGTGGGATATATGATACTGGCAAGCCTG---GTTCTGTTTAAGATTTGGCATCATCTCCAGCTTGCCATGCCAGTGCCAAGCTATTTCTTCTTTATTTTGACCaggtaatgtgaaatatggaaaatatgccattgcttagctctctgccgaacac Alignment from CESAR ttTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAag tgatcttccttttcaaagcccttctggctattattatttttacatttcagtgTTAGAATGGGCAAACCCAAAATTCCTTGGTATGGTGGCAGTTCTTACTGATTGTGCTGTAAGTGTGGGATATATGATACTGGCAAGCCTGGTT---CTGTTTAAGATTTGGCATCATCTCCAGCTTGCCATGCCAGTGCCAAGCTATTTCTTCTTTATTTTGACCaggtaatgtgaaatatggaaaatatgccattgcttagctctctgccgaacac Alignment from Spaln_aa2Genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG tgatcttccttttcaaagcccttctggctattattatttttacatttcagTGTTAGAATGGGCAAACCCAAAATTCCTTGGTATGGTGGCAGTTCTTACTGATTGTGCTGTAAGTGTGGGATATATGATACTGGCAAGCCTGGTT---CTGTTTAAGATTTGGCATCATCTCCAGCTTGCCATGCCAGTGCCAAGCTATTTCTTCTTTATTTTGACCAGgtaatgtgaaatatggaaaatatgccattgcttagctctctgccgaacac Alignment from Spaln_nt2Genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG tgatcttccttttcaaagcccttctggctattattatttttacatttcagTGTTAGAATGGGCAAACCCAAAATTCCTTGGTATGGTGGCAGTTCTTACTGATTGTGCTGTAAGTGTGGGATATATGATACTGGCAAGCCTGG---TTCTGTTTAAGATTTGGCATCATCTCCAGCTTGCCATGCCAGTGCCAAGCTATTTCTTCTTTATTTTGACCAGgtaatgtgaaatatggaaaatatgccattgcttagctctctgccgaacac Alignment from Pairagon TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG tgatcttccttttcaaagcccttctggctattattatttttacatttcagTGTTAGAATGGGCAAACCCAAAATTCCTTGGTATGGTGGCAGTTCTTACTGATTGTGCTGTAAGTGTGGGATATATGATACTGGCAAGCCTGG---TTCTGTTTAAGATTTGGCATCATCTCCAGCTTGCCATGCCAGTGCCAAGCTATTTCTTCTTTATTTTGACCAGgtaatgtgaaatatggaaaatatgccattgcttagctctctgccgaacac Alignment from Exonerate_protein2genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG tgatcttccttttcaaagcccttctggctattattatttttacatttcagTGTTAGAATGGGCAAACCCAAAATTCCTTGGTATGGTGGCAGTTCTTACTGATTGTGCTGTAAGTGTGGGATATATGATACTGGCAAGCCTGGTT---CTGTTTAAGATTTGGCATCATCTCCAGCTTGCCATGCCAGTGCCAAGCTATTTCTTCTTTATTTTGACCAGgtaatgtgaaatatggaaaatatgccattgcttagctctctgccgaacac Alignment from Exonerate_coding2genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG tgatcttccttttcaaagcccttctggctattattatttttacatttcagTGTTAGAATGGGCAAACCCAAAATTCCTTGGTATGGTGGCAGTTCTTACTGATTGTGCTGTAAGTGTGGGATATATGATACTGGCAAGCCTGGTT---CTGTTTAAGATTTGGCATCATCTCCAGCTTGCCATGCCAGTGCCAAGCTATTTCTTCTTTATTTTGACCAGgtaatgtgaaatatggaaaatatgccattgcttagctctctgccgaacac Alignment from GeneWise TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG tgatcttccttttcaaagcccttctggctattattatttttacatttcagTGTTAGAATGGGCAAACCCAAAATTCCTTGGTATGGTGGCAGTTCTTACTGATTGTGCTGTAAGTGTGGGATATATGATACTGGCAAGCCTGGTT---CTGTTTAAGATTTGGCATCATCTCCAGCTTGCCATGCCAGTGCCAAGCTATTTCTTCTTTATTTTGACCAGgtaatgtgaaatatggaaaatatgccattgcttagctctctgccgaacac #### Slc22a28_ID2248_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCa tcaaaaatccaaactattgatacaattagcccttcccttccctcatccaggTTTGGAAGAAAATTCATACTAACATGTGCCCTATTGCAATTTACAATCACCGAGACTTGTGTAGCATTTGCTCCATCTTTCTTTATCTACTGCTTGCTTCGCTTCCTAGCTGGAATGTTTGTAGAACCCACATCAGTGAATAGTAACCTACTCagtgagtctctgtcagtgcggggctgagccatgctgatcttccttttcaaa Alignment from CESAR gTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCa tcaaaaatccaaactattgatacaattagcccttcccttccctcatccaggTTTGGAAGAAAATTCATACTAACATGTGCCCTATTGCAATTTACAATCACCGAGACTTGTGTAGCATTTGCTCCATCTTTCTTTATCTACTGCTTGCTTCGCTTCCTAGCTGGAATGTTTGTAGAACCCACATCAGTGAATAGTAACCTACTCagtgagtctctgtcagtgcggggctgagccatgctgatcttccttttcaaa Alignment from Spaln_aa2Genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA tcaaaaatccaaactattgatacaattagcccttcccttccctcatccagGTTTGGAAGAAAATTCATACTAACATGTGCCCTATTGCAATTTACAATCACCGAGACTTGTGTAGCATTTGCTCCATCTTTCTTTATCTACTGCTTGCTTCGCTTCCTAGCTGGAATGTTTGTAGAACCCACATCAGTGAATAGTAACCTACTCAgtgagtctctgtcagtgcggggctgagccatgctgatcttccttttcaaa Alignment from Spaln_nt2Genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA tcaaaaatccaaactattgatacaattagcccttcccttccctcatccagGTTTGGAAGAAAATTCATACTAACATGTGCCCTATTGCAATTTACAATCACCGAGACTTGTGTAGCATTTGCTCCATCTTTCTTTATCTACTGCTTGCTTCGCTTCCTAGCTGGAATGTTTGTAGAACCCACATCAGTGAATAGTAACCTACTCAgtgagtctctgtcagtgcggggctgagccatgctgatcttccttttcaaa Alignment from Pairagon GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA tcaaaaatccaaactattgatacaattagcccttcccttccctcatccagGTTTGGAAGAAAATTCATACTAACATGTGCCCTATTGCAATTTACAATCACCGAGACTTGTGTAGCATTTGCTCCATCTTTCTTTATCTACTGCTTGCTTCGCTTCCTAGCTGGAATGTTTGTAGAACCCACATCAGTGAATAGTAACCTACTCAgtgagtctctgtcagtgcggggctgagccatgctgatcttccttttcaaa Alignment from Exonerate_protein2genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA tcaaaaatccaaactattgatacaattagcccttcccttccctcatccagGTTTGGAAGAAAATTCATACTAACATGTGCCCTATTGCAATTTACAATCACCGAGACTTGTGTAGCATTTGCTCCATCTTTCTTTATCTACTGCTTGCTTCGCTTCCTAGCTGGAATGTTTGTAGAACCCACATCAGTGAATAGTAACCTACTCAgtgagtctctgtcagtgcggggctgagccatgctgatcttccttttcaaa Alignment from Exonerate_coding2genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA tcaaaaatccaaactattgatacaattagcccttcccttccctcatccagGTTTGGAAGAAAATTCATACTAACATGTGCCCTATTGCAATTTACAATCACCGAGACTTGTGTAGCATTTGCTCCATCTTTCTTTATCTACTGCTTGCTTCGCTTCCTAGCTGGAATGTTTGTAGAACCCACATCAGTGAATAGTAACCTACTCAgtgagtctctgtcagtgcggggctgagccatgctgatcttccttttcaaa Alignment from GeneWise GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA tcaaaaatccaaactattgatacaattagcccttcccttccctcatccagGTTTGGAAGAAAATTCATACTAACATGTGCCCTATTGCAATTTACAATCACCGAGACTTGTGTAGCATTTGCTCCATCTTTCTTTATCTACTGCTTGCTTCGCTTCCTAGCTGGAATGTTTGTAGAACCCACATCAGTGAATAGTAACCTACTCAgtgagtctctgtcagtgcggggctgagccatgctgatcttccttttcaaa #### Slc22a28_ID2249_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACag ctattgctgcaagatattagatttgtactctctctctgctctttttacagTGGGACTTAGTCTGTAAATCTAAAGCACTTAACTCTATTGCCAAAGTTTCATACATGATTGGCCTATTTATAGGTGCAATCATCTGTAGCCATTTGTCAGACaggtaagttgtttcaatctgatacacatgctcaatggtttatagatgttaag Alignment from CESAR TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACag ctattgctgcaagatattagatttgtactctctctctgctctttttacagTGGGACTTAGTCTGTAAATCTAAAGCACTTAACTCTATTGCCAAAGTTTCATACATGATTGGCCTATTTATAGGTGCAATCATCTGTAGCCATTTGTCAGACaggtaagttgtttcaatctgatacacatgctcaatggtttatagatgttaag Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG ctattgctgcaagatattagatttgtactctctctctgctctttttacagTGGGACTTAGTCTGTAAATCTAAAGCACTTAACTCTATTGCCAAAGTTTCATACATGATTGGCCTATTTATAGGTGCAATCATCTGTAGCCATTTGTCAGACAGgtaagttgtttcaatctgatacacatgctcaatggtttatagatgttaag Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG ctattgctgcaagatattagatttgtactctctctctgctctttttacagTGGGACTTAGTCTGTAAATCTAAAGCACTTAACTCTATTGCCAAAGTTTCATACATGATTGGCCTATTTATAGGTGCAATCATCTGTAGCCATTTGTCAGACAGgtaagttgtttcaatctgatacacatgctcaatggtttatagatgttaag Alignment from Pairagon TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG ctattgctgcaagatattagatttgtactctctctctgctctttttacagTGGGACTTAGTCTGTAAATCTAAAGCACTTAACTCTATTGCCAAAGTTTCATACATGATTGGCCTATTTATAGGTGCAATCATCTGTAGCCATTTGTCAGACAGgtaagttgtttcaatctgatacacatgctcaatggtttatagatgttaag Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG ctattgctgcaagatattagatttgtactctctctctgctctttttacagTGGGACTTAGTCTGTAAATCTAAAGCACTTAACTCTATTGCCAAAGTTTCATACATGATTGGCCTATTTATAGGTGCAATCATCTGTAGCCATTTGTCAGACAGgtaagttgtttcaatctgatacacatgctcaatggtttatagatgttaag Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG ctattgctgcaagatattagatttgtactctctctctgctctttttacagTGGGACTTAGTCTGTAAATCTAAAGCACTTAACTCTATTGCCAAAGTTTCATACATGATTGGCCTATTTATAGGTGCAATCATCTGTAGCCATTTGTCAGACAGgtaagttgtttcaatctgatacacatgctcaatggtttatagatgttaag Alignment from GeneWise TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG ctattgctgcaagatattagatttgtactctctctctgctctttttacagTGGGACTTAGTCTGTAAATCTAAAGCACTTAACTCTATTGCCAAAGTTTCATACATGATTGGCCTATTTATAGGTGCAATCATCTGTAGCCATTTGTCAGACAGgtaagttgtttcaatctgatacacatgctcaatggtttatagatgttaag #### Slc22a29_ID2261_2 --> 0 - 2 Original Alignment TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACag cagatccaatttgagctattttctaaccacctttgttgggggttttgcagTGGGACTTGGTATGTGAATCTCAGGCTGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGGGTACTCATCGGCGGTATA---TGTGGTCATCTGTCAGACaggtaaatatgagaggaatccatactaggtcttcctggtctctatttgggct Alignment from CESAR TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACag cagatccaatttgagctattttctaaccacctttgttgggggttttgcagTGGGACTTGGTATGTGAATCTCAGGCTGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGGGTACTCATCGGCGGT---ATATGTGGTCATCTGTCAGACaggtaaatatgagaggaatccatactaggtcttcctggtctctatttgggct Alignment from Spaln_aa2Genome TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagatccaatttgagctattttctaaccacctttgttgggggttttgcagTGGGACTTGGTATGTGAATCTCAGGCTGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGGGTACTCATCGGCGGT---ATATGTGGTCATCTGTCAGACAGgtaaatatgagaggaatccatactaggtcttcctggtctctatttgggct Alignment from Spaln_nt2Genome TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagatccaatttgagctattttctaaccacctttgttgggggttttgcagTGGGACTTGGTATGTGAATCTCAGGCTGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGGGTACTCATCGGCGGT---ATATGTGGTCATCTGTCAGACAGgtaaatatgagaggaatccatactaggtcttcctggtctctatttgggct Alignment from Pairagon TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagatccaatttgagctattttctaaccacctttgttgggggttttgcagTGGGACTTGGTATGTGAATCTCAGGCTGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGGGTACTCATCGGCGGT---ATATGTGGTCATCTGTCAGACAGgtaaatatgagaggaatccatactaggtcttcctggtctctatttgggct Alignment from Exonerate_protein2genome TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagatccaatttgagctattttctaaccacctttgttgggggttttgcagTGGGACTTGGTATGTGAATCTCAGGCTGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGGGTACTCATCGGCGGT---ATATGTGGTCATCTGTCAGACAGgtaaatatgagaggaatccatactaggtcttcctggtctctatttgggct Alignment from Exonerate_coding2genome TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagatccaatttgagctattttctaaccacctttgttgggggttttgcagTGGGACTTGGTATGTGAATCTCAGGCTGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGGGTACTCATCGGCGGT---ATATGTGGTCATCTGTCAGACAGgtaaatatgagaggaatccatactaggtcttcctggtctctatttgggct Alignment from GeneWise TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagatccaatttgagctattttctaaccacctttgttgggggttttgcagTGGGACTTGGTATGTGAATCTCAGGCTGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGGGTACTCATCGGCGGT---ATATGTGGTCATCTGTCAGACAGgtaaatatgagaggaatccatactaggtcttcctggtctctatttgggct #### Slc22a6_ID2286_7 --> 1 - 1 Original Alignment gTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGg gcctctctcagtttattcaccagctcattctgcatcttctcttggtgcaggTTTGCTACTAGGTTTGCTTACTATGGGGTCATAATGGACCTGCAGGGCTTTGGGGTAAGTATGTACCTTATCCAAGTGATCTTTGGTGCTGTAGACCTCCCAGCTAAGTTTGTGCACTTTCTAGTCATCAACTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCCGGCATCTGTATTTTAGTAAATGGCATAATACCAAGAggtaggatgcatgacagtctttcagctccaagtgtaacccacccagcccct Alignment from CESAR gTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGg gcctctctcagtttattcaccagctcattctgcatcttctcttggtgcaggTTTGCTACTAGGTTTGCTTACTATGGGGTCATAATGGACCTGCAGGGCTTTGGGGTAAGTATGTACCTTATCCAAGTGATCTTTGGTGCTGTAGACCTCCCAGCTAAGTTTGTGCACTTTCTAGTCATCAACTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCCGGCATCTGTATTTTAGTAAATGGCATAATACCAAGAggtaggatgcatgacagtctttcagctccaagtgtaacccacccagcccct Alignment from Spaln_aa2Genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gcctctctcagtttattcaccagctcattctgcatcttctcttggtgcagGTTTGCTACTAGGTTTGCTTACTATGGGGTCATAATGGACCTGCAGGGCTTTGGGGTAAGTATGTACCTTATCCAAGTGATCTTTGGTGCTGTAGACCTCCCAGCTAAGTTTGTGCACTTTCTAGTCATCAACTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCCGGCATCTGTATTTTAGTAAATGGCATAATACCAAGAGgtaggatgcatgacagtctttcagctccaagtgtaacccacccagcccct Alignment from Spaln_nt2Genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gcctctctcagtttattcaccagctcattctgcatcttctcttggtgcagGTTTGCTACTAGGTTTGCTTACTATGGGGTCATAATGGACCTGCAGGGCTTTGGGGTAAGTATGTACCTTATCCAAGTGATCTTTGGTGCTGTAGACCTCCCAGCTAAGTTTGTGCACTTTCTAGTCATCAACTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCCGGCATCTGTATTTTAGTAAATGGCATAATACCAAGAGgtaggatgcatgacagtctttcagctccaagtgtaacccacccagcccct Alignment from Pairagon GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gcctctctcagtttattcaccagctcattctgcatcttctcttggtgcagGTTTGCTACTAGGTTTGCTTACTATGGGGTCATAATGGACCTGCAGGGCTTTGGGGTAAGTATGTACCTTATCCAAGTGATCTTTGGTGCTGTAGACCTCCCAGCTAAGTTTGTGCACTTTCTAGTCATCAACTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCCGGCATCTGTATTTTAGTAAATGGCATAATACCAAGAGgtaggatgcatgacagtctttcagctccaagtgtaacccacccagcccct Alignment from Exonerate_protein2genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gcctctctcagtttattcaccagctcattctgcatcttctcttggtgcagGTTTGCTACTAGGTTTGCTTACTATGGGGTCATAATGGACCTGCAGGGCTTTGGGGTAAGTATGTACCTTATCCAAGTGATCTTTGGTGCTGTAGACCTCCCAGCTAAGTTTGTGCACTTTCTAGTCATCAACTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCCGGCATCTGTATTTTAGTAAATGGCATAATACCAAGAGgtaggatgcatgacagtctttcagctccaagtgtaacccacccagcccct Alignment from Exonerate_coding2genome CGCTGCCCCACGCTTCGGCGCCTCTTCCTCTGCCTC---TCTATGCTGTGGTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG GCCTCTCTCAGTTTATTCACCAGCTCATTCTGCATCTTCTCTTGGTGCAGGTTTGCTACTAGGTTTGCTTACTATGGGGTCATAATGGACCTGCAGGGCTTTGGGGTAAGTATGTACCTTATCCAAGTGATCTTTGGTGCTGTAGACCTCCCAGCTAAGTTTGTGCACTTTCTAGTCATCAACTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCCGGCATCTGTATTTTAGTAAATGGCATAATACCAAGAGgtaggatgcatgacagtctttcagctccaagtgtaacccacccagcccct Alignment from GeneWise GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gcctctctcagtttattcaccagctcattctgcatcttctcttggtgcagGTTTGCTACTAGGTTTGCTTACTATGGGGTCATAATGGACCTGCAGGGCTTTGGGGTAAGTATGTACCTTATCCAAGTGATCTTTGGTGCTGTAGACCTCCCAGCTAAGTTTGTGCACTTTCTAGTCATCAACTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCCGGCATCTGTATTTTAGTAAATGGCATAATACCAAGAGgtaggatgcatgacagtctttcagctccaagtgtaacccacccagcccct #### Slc22a8_ID2273_6 --> 0 - 2 Original Alignment GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGT---GTGACCTTCTGTCTCTCTCTGGCCtg aatgtggaatcctttccaatatgtcattgatgtcacaactgtcttcatagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCTGCTGAGGTCAAATATGGTTTATCAGACTTGTATCAAGTA---TTTCTACGTCGACGAGTAACTTATTGTCTTTCTCTTTCCtggtgagctctgtctgttatagtgatccggctgttttataaaggaaaaccat Alignment from CESAR GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCtg aatgtggaatcctttccaatatgtcattgatgtcacaactgtcttcatagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCTGCTGAGGTCAAATATGGTTTATCAGACTTGTATCAAGTATTTCTACGTCGACGAGTAACTTATTGTCTTTCTCTTTCCtggtgagctctgtctgttatagtgatccggctgttttataaaggaaaaccat Alignment from Spaln_aa2Genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG aatgtggaatcctttccaatatgtcattgatgtcacaactgtcttcatagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCTGCTGAGGTCAAATATGGTTTATCAGACTTGTATCAAGTATTTCTACGTCGACGAGTAACTTATTGTCTTTCTCTTTCCTGgtgagctctgtctgttatagtgatccggctgttttataaaggaaaaccat Alignment from Spaln_nt2Genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG aatgtggaatcctttccaatatgtcattgatgtcacaactgtcttcatagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCTGCTGAGGTCAAATATGGTTTATCAGACTTGTATCAAGTATTTCTACGTCGACGAGTAACTTATTGTCTTTCTCTTTCCTGgtgagctctgtctgttatagtgatccggctgttttataaaggaaaaccat Alignment from Pairagon GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG aatgtggaatcctttccaatatgtcattgatgtcacaactgtcttcatagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCTGCTGAGGTCAAATATGGTTTATCAGACTTGTATCAAGTATTTCTACGTCGACGAGTAACTTATTGTCTTTCTCTTTCCTGgtgagctctgtctgttatagtgatccggctgttttataaaggaaaaccat Alignment from Exonerate_protein2genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG aatgtggaatcctttccaatatgtcattgatgtcacaactgtcttcatagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCTGCTGAGGTCAAATATGGTTTATCAGACTTGTATCAAGTATTTCTACGTCGACGAGTAACTTATTGTCTTTCTCTTTCCTGgtgagctctgtctgttatagtgatccggctgttttataaaggaaaaccat Alignment from Exonerate_coding2genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG aatgtggaatcctttccaatatgtcattgatgtcacaactgtcttcatagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCTGCTGAGGTCAAATATGGTTTATCAGACTTGTATCAAGTATTTCTACGTCGACGAGTAACTTATTGTCTTTCTCTTTCCTGgtgagctctgtctgttatagtgatccggctgttttataaaggaaaaccat Alignment from GeneWise GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG aatgtggaatcctttccaatatgtcattgatgtcacaactgtcttcatagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCTGCTGAGGTCAAATATGGTTTATCAGACTTGTATCAAGTATTTCTACGTCGACGAGTAACTTATTGTCTTTCTCTTTCCTGgtgagctctgtctgttatagtgatccggctgttttataaaggaaaaccat #### Slc22a8_ID2274_7 --> 1 - 1 Original Alignment gTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAg gtgaagatagagtccacatcatctaatcgaggtttctggtgtctttttaggTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTAAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACGGTCCTCTCTATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTGCTGATCTTAGCACGAGTGGTAATACTAGCTCTTGTCTTTGTCTCTCTAggtaaggtatggcagtcaccttccctaggaagaaatatctagaaccatatt Alignment from CESAR gTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAg gtgaagatagagtccacatcatctaatcgaggtttctggtgtctttttaggTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTAAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACGGTCCTCTCTATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTGCTGATCTTAGCACGAGTGGTAATACTAGCTCTTGTCTTTGTCTCTCTAggtaaggtatggcagtcaccttccctaggaagaaatatctagaaccatatt Alignment from Spaln_aa2Genome GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG gtgaagatagagtccacatcatctaatcgaggtttctggtgtctttttagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTAAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACGGTCCTCTCTATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTGCTGATCTTAGCACGAGTGGTAATACTAGCTCTTGTCTTTGTCTCTCTAGgtaaggtatggcagtcaccttccctaggaagaaatatctagaaccatatt Alignment from Spaln_nt2Genome GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG gtgaagatagagtccacatcatctaatcgaggtttctggtgtctttttagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTAAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACGGTCCTCTCTATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTGCTGATCTTAGCACGAGTGGTAATACTAGCTCTTGTCTTTGTCTCTCTAGgtaaggtatggcagtcaccttccctaggaagaaatatctagaaccatatt Alignment from Pairagon GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG gtgaagatagagtccacatcatctaatcgaggtttctggtgtctttttagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTAAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACGGTCCTCTCTATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTGCTGATCTTAGCACGAGTGGTAATACTAGCTCTTGTCTTTGTCTCTCTAGgtaaggtatggcagtcaccttccctaggaagaaatatctagaaccatatt Alignment from Exonerate_protein2genome GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG gtgaagatagagtccacatcatctaatcgaggtttctggtgtctttttagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTAAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACGGTCCTCTCTATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTGCTGATCTTAGCACGAGTGGTAATACTAGCTCTTGTCTTTGTCTCTCTAGgtaaggtatggcagtcaccttccctaggaagaaatatctagaaccatatt Alignment from Exonerate_coding2genome GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG gtgaagatagagtccacatcatctaatcgaggtttctggtgtctttttagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTAAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACGGTCCTCTCTATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTGCTGATCTTAGCACGAGTGGTAATACTAGCTCTTGTCTTTGTCTCTCTAGgtaaggtatggcagtcaccttccctaggaagaaatatctagaaccatatt Alignment from GeneWise GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG gtgaagatagagtccacatcatctaatcgaggtttctggtgtctttttagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTAAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACGGTCCTCTCTATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTGCTGATCTTAGCACGAGTGGTAATACTAGCTCTTGTCTTTGTCTCTCTAGgtaaggtatggcagtcaccttccctaggaagaaatatctagaaccatatt #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTC------GGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG tggtacaggattccactgccaaagtttgttatgtctcctatcccctgcagGTTCTAGGATTCTTTAAAGGAATGAGTTTCCCAATAGCTACTGTAACTCTGGTTAATTCGGTCTTGTTTTTGTTTGGAGTGTATAGCAACACACTTGTGGCATTAACAGCCACATCCCATCAGGAACACCAGGTTCAGCCTCCAAGTCACACAAATACCTTTATAGCAGGTTGTACAAGAGGTCTCCGGCAGgtcagtaggtcatggacaaaggataacttacatacacttaggttggagaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC------CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG tggtacaggattccactgccaaagtttgttatgtctcctatcccctgcagGTTCTAGGATTCTTTAAAGGAATGAGTTTCCCAATAGCTACTGTAACTCTGGTTAATTCGGTCTTGTTTTTGTTTGGAGTGTATAGCAACACACTTGTGGCATTAACAGCCACATCCCATCAGGAACACCAGGTTCAGCCTCCAAGTCACACAAATACCTTTATAGCAGGTTGTACAAGAGGTCTCCGGCAGgtcagtaggtcatggacaaaggataacttacatacacttaggttggagaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC------CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG tggtacaggattccactgccaaagtttgttatgtctcctatcccctgcagGTTCTAGGATTCTTTAAAGGAATGAGTTTCCCAATAGCTACTGTAACTCTGGTTAATTCGGTCTTGTTTTTGTTTGGAGTGTATAGCAACACACTTGTGGCATTAACAGCCACATCCCATCAGGAACACCAGGTTCAGCCTCCAAGTCACACAAATACCTTTATAGCAGGTTGTACAAGAGGTCTCCGGCAGgtcagtaggtcatggacaaaggataacttacatacacttaggttggagaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTC------GGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG tggtacaggattccactgccaaagtttgttatgtctcctatcccctgcagGTTCTAGGATTCTTTAAAGGAATGAGTTTCCCAATAGCTACTGTAACTCTGGTTAATTCGGTCTTGTTTTTGTTTGGAGTGTATAGCAACACACTTGTGGCATTAACAGCCACATCCCATCAGGAACACCAGGTTCAGCCTCCAAGTCACACAAATACCTTTATAGCAGGTTGTACAAGAGGTCTCCGGCAGgtcagtaggtcatggacaaaggataacttacatacacttaggttggagaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC------CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG tggtacaggattccactgccaaagtttgttatgtctcctatcccctgcagGTTCTAGGATTCTTTAAAGGAATGAGTTTCCCAATAGCTACTGTAACTCTGGTTAATTCGGTCTTGTTTTTGTTTGGAGTGTATAGCAACACACTTGTGGCATTAACAGCCACATCCCATCAGGAACACCAGGTTCAGCCTCCAAGTCACACAAATACCTTTATAGCAGGTTGTACAAGAGGTCTCCGGCAGgtcagtaggtcatggacaaaggataacttacatacacttaggttggagaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC------CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG tggtacaggattccactgccaaagtttgttatgtctcctatcccctgcagGTTCTAGGATTCTTTAAAGGAATGAGTTTCCCAATAGCTACTGTAACTCTGGTTAATTCGGTCTTGTTTTTGTTTGGAGTGTATAGCAACACACTTGTGGCATTAACAGCCACATCCCATCAGGAACACCAGGTTCAGCCTCCAAGTCACACAAATACCTTTATAGCAGGTTGTACAAGAGGTCTCCGGCAGgtcagtaggtcatggacaaaggataacttacatacacttaggttggagaa Alignment from Exonerate_coding2genome CGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCAGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC------CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG TGGTACAGGATTCCACTGCCAAAGTTTGTTATGTCTCCTATCCCCTGCAGGTTCTAGGATTCTTTAAAGGAATGAGTTTCCCAATAGCTACTGTAACTCTGGTTAATTCGGTCTTGTTTTTGTTTGGAGTGTATAGCAACACACTTGTGGCATTAACAGCCACATCCCATCAGGAACACCAGGTTCAGCCTCCAAGTCACACAAATACCTTTATAGCAGGTTGTACAAGAGGTCTCCGGCAGgtcagtaggtcatggacaaaggataacttacatacacttaggttggagaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTC------GGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG tggtacaggattccactgccaaagtttgttatgtctcctatcccctgcagGTTCTAGGATTCTTTAAAGGAATGAGTTTCCCAATAGCTACTGTAACTCTGGTTAATTCGGTCTTGTTTTTGTTTGGAGTGTATAGCAACACACTTGTGGCATTAACAGCCACATCCCATCAGGAACACCAGGTTCAGCCTCCAAGTCACACAAATACCTTTATAGCAGGTTGTACAAGAGGTCTCCGGCAGgtcagtaggtcatggacaaaggataacttacatacacttaggttggagaa #### Slc29a2_ID788_2 --> 1 - 0 Original Alignment cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagcTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from CESAR cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagcTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from Spaln_aa2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from Spaln_nt2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from Pairagon CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from Exonerate_protein2genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctctttccagCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from Exonerate_coding2genome GACAGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcagctactctcccctctgctcttTCCAGCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga Alignment from GeneWise GCGCGGGGAAACGCCCCTCGGGACAGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG gcgacatctgatggatggctggcaGCTACTCTCCCCTCTGCTCTTTCCAGCTACCACCTTGCTGGCATCAGCTTTTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAATTTCTTCATTACGGCAATCCCAgtgggttagtgcaatatggccaccttttcacaggctaagccttcttgaga #### Slc29a2_ID791_5 --> 2 - 1 Original Alignment ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa caattggtagtaaagctctctctatagcgatctctctccctgggatctagctTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCGTTGGCCagtgagaaaatggttgactttaagtgtttcaaattgccagtgagccaacta Alignment from CESAR ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa caattggtagtaaagctctctctatagcgatctctctccctgggatctagctTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCGTTGGCCagtgagaaaatggttgactttaagtgtttcaaattgccagtgagccaacta Alignment from Spaln_aa2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA caattggtagtaaagctctctctatagcgatctctctccctgggatctagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCGTTGGCCAgtgagaaaatggttgactttaagtgtttcaaattgccagtgagccaacta Alignment from Spaln_nt2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA caattggtagtaaagctctctctatagcgatctctctccctgggatctagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCGTTGGCCAgtgagaaaatggttgactttaagtgtttcaaattgccagtgagccaacta Alignment from Pairagon CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA caattggtagtaaagctctctctatagcgatctctctccctgggatctagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCGTTGGCCAgtgagaaaatggttgactttaagtgtttcaaattgccagtgagccaacta Alignment from Exonerate_protein2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA caattggtagtaaagctctctctatagcgatctctctccctgggatctagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCGTTGGCCAgtgagaaaatggttgactttaagtgtttcaaattgccagtgagccaacta Alignment from Exonerate_coding2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA caattggtagtaaagctctctctatagcgatctctctccctgggatctagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCGTTGGCCAgtgagaaaatggttgactttaagtgtttcaaattgccagtgagccaacta Alignment from GeneWise CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA caattggtagtaaagctctctctatagcgatctctctccctgggatctagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCGTTGGCCAgtgagaaaatggttgactttaagtgtttcaaattgccagtgagccaacta #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG actccacagtatggaccagaagagccatatgctgcctctctacttcccaggtCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaagagcctcaggcaagctgtcattaatgaaacgcactagggaaccagg Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG actccacagtatggaccagaagagccatatgctgcctctctacttcccaggtCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaagagcctcaggcaagctgtcattaatgaaacgcactagggaaccagg Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG actccacagtatggaccagaagagccatatgctgcctctctacttcccagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaagagcctcaggcaagctgtcattaatgaaacgcactagggaaccagg Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG actccacagtatggaccagaagagccatatgctgcctctctacttcccagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaagagcctcaggcaagctgtcattaatgaaacgcactagggaaccagg Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG actccacagtatggaccagaagagccatatgctgcctctctacttcccagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaagagcctcaggcaagctgtcattaatgaaacgcactagggaaccagg Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG actccacagtatggaccagaagagccatatgctgcctctctacttcccagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaagagcctcaggcaagctgtcattaatgaaacgcactagggaaccagg Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG actccacagtatggaccagaagagccatatgctgcctctctacttcccagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaagagcctcaggcaagctgtcattaatgaaacgcactagggaaccagg Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG actccacagtatggaccagaagagccatatgctgcctctctacttcccagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaagagcctcaggcaagctgtcattaatgaaacgcactagggaaccagg #### Slit1_ID8202_36 --> 1 - 1 Original Alignment gTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAg actgaacacaatcttttcttgaacaatagcttttctctgtcccggcttagaTGTGTACATGGAAAATGTGTGCCACTTGATGCGCTTGCATATAGTTGTGAATGCCAAGATGGGTACTCAGGAGCTCTATGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCATGGTCATTGCCAGGCCTCAGCAACAATTGGGGCCCATTGTGTGTGCAGCCCAGGTTTCTCGGGCAAACTATGGGAACAAggtgagggccctcttatggctagccctctggttgcaacactcctcatgact Alignment from CESAR gTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAg actgaacacaatcttttcttgaacaatagcttttctctgtcccggcttagaTGTGTACATGGAAAATGTGTGCCACTTGATGCGCTTGCATATAGTTGTGAATGCCAAGATGGGTACTCAGGAGCTCTATGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCATGGTCATTGCCAGGCCTCAGCAACAATTGGGGCCCATTGTGTGTGCAGCCCAGGTTTCTCGGGCAAACTATGGGAACAAggtgagggccctcttatggctagccctctggttgcaacactcctcatgact Alignment from Spaln_aa2Genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG actgaacacaatcttttcttgaacaatagcttttctctgtcccggcttagATGTGTACATGGAAAATGTGTGCCACTTGATGCGCTTGCATATAGTTGTGAATGCCAAGATGGGTACTCAGGAGCTCTATGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCATGGTCATTGCCAGGCCTCAGCAACAATTGGGGCCCATTGTGTGTGCAGCCCAGGTTTCTCGGGCAAACTATGGGAACAAGgtgagggccctcttatggctagccctctggttgcaacactcctcatgact Alignment from Spaln_nt2Genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG actgaacacaatcttttcttgaacaatagcttttctctgtcccggcttagATGTGTACATGGAAAATGTGTGCCACTTGATGCGCTTGCATATAGTTGTGAATGCCAAGATGGGTACTCAGGAGCTCTATGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCATGGTCATTGCCAGGCCTCAGCAACAATTGGGGCCCATTGTGTGTGCAGCCCAGGTTTCTCGGGCAAACTATGGGAACAAGgtgagggccctcttatggctagccctctggttgcaacactcctcatgact Alignment from Pairagon GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG actgaacacaatcttttcttgaacaatagcttttctctgtcccggcttagATGTGTACATGGAAAATGTGTGCCACTTGATGCGCTTGCATATAGTTGTGAATGCCAAGATGGGTACTCAGGAGCTCTATGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCATGGTCATTGCCAGGCCTCAGCAACAATTGGGGCCCATTGTGTGTGCAGCCCAGGTTTCTCGGGCAAACTATGGGAACAAGgtgagggccctcttatggctagccctctggttgcaacactcctcatgact Alignment from Exonerate_protein2genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG actgaacacaatcttttcttgaacaatagcttttctctgtcccggcttagATGTGTACATGGAAAATGTGTGCCACTTGATGCGCTTGCATATAGTTGTGAATGCCAAGATGGGTACTCAGGAGCTCTATGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCATGGTCATTGCCAGGCCTCAGCAACAATTGGGGCCCATTGTGTGTGCAGCCCAGGTTTCTCGGGCAAACTATGGGAACAAGgtgagggccctcttatggctagccctctggttgcaacactcctcatgact Alignment from Exonerate_coding2genome actgaacacaatcttttcttgaacaatagcttttctctgtcccggcttagatgtgtacatggaaaatgtgtgccacttgatgcgcttgcatatagttgtgaatgccaagatgggtactcaggagctctatgcaatcaggtgggggcagttactgatccttgtgggtccttgcagtgtctgcatggtcattgccaggcctcagcaacaattggggcccattgtgtgtgcagcccaggtttctcgggcaaactatgggaacaaggtgagggccctcttatggctagccctctggttgcaacactcctcatgact Alignment from GeneWise GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG actgaacacaatcttttcttgaacaatagcttttctctgtcccggcttagATGTGTACATGGAAAATGTGTGCCACTTGATGCGCTTGCATATAGTTGTGAATGCCAAGATGGGTACTCAGGAGCTCTATGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCATGGTCATTGCCAGGCCTCAGCAACAATTGGGGCCCATTGTGTGTGCAGCCCAGGTTTCTCGGGCAAACTATGGGAACAAGgtgagggccctcttatggctagccctctggttgcaacactcctcatgact #### Slit1_ID8214_25 --> 1 - 2 Original Alignment gTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACct cattactttgaatccacatctaatcctcttttttttgctctttcacttaggTCCTTACATAGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGAATTGAGGTCTGTATCTCACctgtaaagacaggagctgtgaaactctgttgggcagctcttaaagtgtaccc Alignment from CESAR gTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACct cattactttgaatccacatctaatcctcttttttttgctctttcacttaggTCCTTACATAGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGAATTGAGGTCTGTATCTCACctgtaaagacaggagctgtgaaactctgttgggcagctcttaaagtgtaccc Alignment from Spaln_aa2Genome GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattactttgaatccacatctaatcctcttttttttgctctttcacttagGTCCTTACATAGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGAATTGAGGTCTGTATCTCACCTgtaaagacaggagctgtgaaactctgttgggcagctcttaaagtgtaccc Alignment from Spaln_nt2Genome GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattactttgaatccacatctaatcctcttttttttgctctttcacttagGTCCTTACATAGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGAATTGAGGTCTGTATCTCACCTgtaaagacaggagctgtgaaactctgttgggcagctcttaaagtgtaccc Alignment from Pairagon GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattactttgaatccacatctaatcctcttttttttgctctttcacttagGTCCTTACATAGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGAATTGAGGTCTGTATCTCACCTgtaaagacaggagctgtgaaactctgttgggcagctcttaaagtgtaccc Alignment from Exonerate_protein2genome GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattactttgaatccacatctaatcctcttttttttgctctttcacttagGTCCTTACATAGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGAATTGAGGTCTGTATCTCACCTgtaaagacaggagctgtgaaactctgttgggcagctcttaaagtgtaccc Alignment from Exonerate_coding2genome GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattactttgaatccacatctaatcctcttttttttgctctttcacttagGTCCTTACATAGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGAATTGAGGTCTGTATCTCACCTgtaaagacaggagctgtgaaactctgttgggcagctcttaaagtgtaccc Alignment from GeneWise GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattactttgaatccacatctaatcctcttttttttgctctttcacttagGTCCTTACATAGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGAATTGAGGTCTGTATCTCACCTgtaaagacaggagctgtgaaactctgttgggcagctcttaaagtgtaccc #### Slit1_ID8216_23 --> 1 - 2 Original Alignment gGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGct ctaatgggcaatgctcccttggataataaatgagttttattttgtaacaggGACTTGAGCAACAACAAAATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGTTGACCACActgtgagttcttgaccgaggtgatgcaagcacaaaatcaaccccaagttgct Alignment from CESAR gGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGct ctaatgggcaatgctcccttggataataaatgagttttattttgtaacaggGACTTGAGCAACAACAAAATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGTTGACCACActgtgagttcttgaccgaggtgatgcaagcacaaaatcaaccccaagttgct Alignment from Spaln_aa2Genome GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctaatgggcaatgctcccttggataataaatgagttttattttgtaacagGGACTTGAGCAACAACAAAATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGTTGACCACACTgtgagttcttgaccgaggtgatgcaagcacaaaatcaaccccaagttgct Alignment from Spaln_nt2Genome GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctaatgggcaatgctcccttggataataaatgagttttattttgtaacagGGACTTGAGCAACAACAAAATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGTTGACCACACTgtgagttcttgaccgaggtgatgcaagcacaaaatcaaccccaagttgct Alignment from Pairagon GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctaatgggcaatgctcccttggataataaatgagttttattttgtaacagGGACTTGAGCAACAACAAAATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGTTGACCACACTgtgagttcttgaccgaggtgatgcaagcacaaaatcaaccccaagttgct Alignment from Exonerate_protein2genome GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctaatgggcaatgctcccttggataataaatgagttttattttgtaacagGGACTTGAGCAACAACAAAATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGTTGACCACACTgtgagttcttgaccgaggtgatgcaagcacaaaatcaaccccaagttgct Alignment from Exonerate_coding2genome GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctaatgggcaatgctcccttggataataaatgagttttattttgtaacagGGACTTGAGCAACAACAAAATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGTTGACCACACTgtgagttcttgaccgaggtgatgcaagcacaaaatcaaccccaagttgct Alignment from GeneWise GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctaatgggcaatgctcccttggataataaatgagttttattttgtaacagGGACTTGAGCAACAACAAAATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGTTGACCACACTgtgagttcttgaccgaggtgatgcaagcacaaaatcaaccccaagttgct #### Slit1_ID8222_17 --> 1 - 2 Original Alignment aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat gggagagctagggggagctaggggttgacttccctcttgcatccccacagtCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACAGGTTTATTTAGGAAGCTCACACATCTGGAGAAGatgtgagtatagattcgattctgagcattggttgtatgaggcatgactaact Alignment from CESAR aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat gggagagctagggggagctaggggttgacttccctcttgcatccccacagtCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACAGGTTTATTTAGGAAGCTCACACATCTGGAGAAGatgtgagtatagattcgattctgagcattggttgtatgaggcatgactaact Alignment from Spaln_aa2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT gggagagctagggggagctaggggttgacttccctcttgcatccccacagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACAGGTTTATTTAGGAAGCTCACACATCTGGAGAAGATgtgagtatagattcgattctgagcattggttgtatgaggcatgactaact Alignment from Spaln_nt2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT gggagagctagggggagctaggggttgacttccctcttgcatccccacagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACAGGTTTATTTAGGAAGCTCACACATCTGGAGAAGATgtgagtatagattcgattctgagcattggttgtatgaggcatgactaact Alignment from Pairagon ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT gggagagctagggggagctaggggttgacttccctcttgcatccccacagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACAGGTTTATTTAGGAAGCTCACACATCTGGAGAAGATgtgagtatagattcgattctgagcattggttgtatgaggcatgactaact Alignment from Exonerate_protein2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT gggagagctagggggagctaggggttgacttccctcttgcatccccacagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACAGGTTTATTTAGGAAGCTCACACATCTGGAGAAGATgtgagtatagattcgattctgagcattggttgtatgaggcatgactaact Alignment from Exonerate_coding2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT gggagagctagggggagctaggggttgacttccctcttgcatccccacagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACAGGTTTATTTAGGAAGCTCACACATCTGGAGAAGATgtgagtatagattcgattctgagcattggttgtatgaggcatgactaact Alignment from GeneWise ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT gggagagctagggggagctaggggttgacttccctcttgcatccccacagTCGGCTGAACAACAATGAGATCTCTATCCTAGAGGCCACAGGTTTATTTAGGAAGCTCACACATCTGGAGAAGATgtgagtatagattcgattctgagcattggttgtatgaggcatgactaact #### Slit1_ID8223_16 --> 2 - 2 Original Alignment ggACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGct ctccactgatatggacacagaccctaactcccctttcctcctgtctgcagggACAGAAGATTACCACCTGAACAGTGAATGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGCGAGGCAAGTGTGGTTGAGTGCTCAAGCTTAAAACTCTCCAAGGTCCCTGAGCGAGTCCCACAATCCACAACTAGGatgtgagtgttacactatttttgtgcagctggttatcgttacttaagaggct Alignment from CESAR ggACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGct ctccactgatatggacacagaccctaactcccctttcctcctgtctgcagggACAGAAGATTACCACCTGAACAGTGAATGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGCGAGGCAAGTGTGGTTGAGTGCTCAAGCTTAAAACTCTCCAAGGTCCCTGAGCGAGTCCCACAATCCACAACTAGGatgtgagtgttacactatttttgtgcagctggttatcgttacttaagaggct Alignment from Spaln_aa2Genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ctccactgatatggacacagaccctaactcccctttcctcctgtctgcagGGACAGAAGATTACCACCTGAACAGTGAATGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGCGAGGCAAGTGTGGTTGAGTGCTCAAGCTTAAAACTCTCCAAGGTCCCTGAGCGAGTCCCACAATCCACAACTAGGATgtgagtgttacactatttttgtgcagctggttatcgttacttaagaggct Alignment from Spaln_nt2Genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ctccactgatatggacacagaccctaactcccctttcctcctgtctgcagGGACAGAAGATTACCACCTGAACAGTGAATGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGCGAGGCAAGTGTGGTTGAGTGCTCAAGCTTAAAACTCTCCAAGGTCCCTGAGCGAGTCCCACAATCCACAACTAGGATgtgagtgttacactatttttgtgcagctggttatcgttacttaagaggct Alignment from Pairagon GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ctccactgatatggacacagaccctaactcccctttcctcctgtctgcagGGACAGAAGATTACCACCTGAACAGTGAATGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGCGAGGCAAGTGTGGTTGAGTGCTCAAGCTTAAAACTCTCCAAGGTCCCTGAGCGAGTCCCACAATCCACAACTAGGATgtgagtgttacactatttttgtgcagctggttatcgttacttaagaggct Alignment from Exonerate_protein2genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ctccactgatatggacacagaccctaactcccctttcctcctgtctgcagGGACAGAAGATTACCACCTGAACAGTGAATGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGCGAGGCAAGTGTGGTTGAGTGCTCAAGCTTAAAACTCTCCAAGGTCCCTGAGCGAGTCCCACAATCCACAACTAGGATgtgagtgttacactatttttgtgcagctggttatcgttacttaagaggct Alignment from Exonerate_coding2genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ctccactgatatggacacagaccctaactcccctttcctcctgtctgcagGGACAGAAGATTACCACCTGAACAGTGAATGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGCGAGGCAAGTGTGGTTGAGTGCTCAAGCTTAAAACTCTCCAAGGTCCCTGAGCGAGTCCCACAATCCACAACTAGGATgtgagtgttacactatttttgtgcagctggttatcgttacttaagaggct Alignment from GeneWise CCAAAGAGCAGTACTTCATT------CCAGGGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ctccactgatatggacacagACCCTAACTCCCCTTTCCTCCTGTCTGCAGGGACAGAAGATTACCACCTGAACAGTGAATGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGCGAGGCAAGTGTGGTTGAGTGCTCAAGCTTAAAACTCTCCAAGGTCCCTGAGCGAGTCCCACAATCCACAACTAGGATgtgagtgttacactatttttgtgcagctggttatcgttacttaagaggct #### Slit1_ID8227_12 --> 1 - 2 Original Alignment gGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGct ctattatttcatttacacatatccctataagcacaatatctttttcttaggGTACTTTATGGGAATAAGATTACTGACCTCCCTCATGGTGTGTTTGGGGGCCTGTATACACTACAGTTAccgtacagtagtgaaggagggaaatttataggactaaatgcccacgagagca Alignment from CESAR gGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGct ctattatttcatttacacatatccctataagcacaatatctttttcttaggGTACTTTATGGGAATAAGATTACTGACCTCCCTCATGGTGTGTTTGGGGGCCTGTATACACTACAGTTAccgtacagtagtgaaggagggaaatttataggactaaatgcccacgagagca Alignment from Spaln_aa2Genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT ctattatttcatttacacatatccctataagcacaatatctttttcttagGGTACTTTATGGGAATAAGATTACTGACCTCCCTCATGGTGTGTTTGGGGGCCTGTATACACTACAGTTACCgtacagtagtgaaggagggaaatttataggactaaatgcccacgagagca Alignment from Spaln_nt2Genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT ctattatttcatttacacatatccctataagcacaatatctttttcttagGGTACTTTATGGGAATAAGATTACTGACCTCCCTCATGGTGTGTTTGGGGGCCTGTATACACTACAGTTACCgtacagtagtgaaggagggaaatttataggactaaatgcccacgagagca Alignment from Pairagon GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT ctattatttcatttacacatatccctataagcacaatatctttttcttagGGTACTTTATGGGAATAAGATTACTGACCTCCCTCATGGTGTGTTTGGGGGCCTGTATACACTACAGTTACCgtacagtagtgaaggagggaaatttataggactaaatgcccacgagagca Alignment from Exonerate_protein2genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT ctattatttcatttacacatatccctataagcacaatatctttttcttagGGTACTTTATGGGAATAAGATTACTGACCTCCCTCATGGTGTGTTTGGGGGCCTGTATACACTACAGTTACCgtacagtagtgaaggagggaaatttataggactaaatgcccacgagagca Alignment from Exonerate_coding2genome GTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT ctattatttcatttacacatatccctataagcacaatatctttttcttaggGTACTTTATGGGAATAAGATTACTGACCTCCCTCATGGTGTGTTTGGGGGCCTGTATACACTACAGTTACCgtacagtagtgaaggagggaaatttataggactaaatgcccacgagagca Alignment from GeneWise GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT ctattatttcatttacacatatccctataagcacaatatctttttcttagGGTACTTTATGGGAATAAGATTACTGACCTCCCTCATGGTGTGTTTGGGGGCCTGTATACACTACAGTTACCgtacagtagtgaaggagggaaatttataggactaaatgcccacgagagca #### Slit1_ID8230_9 --> 2 - 2 Original Alignment gcCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAG---GGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGat ctagtttaagagtctctgagcgctttttcaacttttatcctttctaacaggcCAGGGGAGAGCAGCAGGGGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAACCATGTGTAGCTGCAGCAGTAGCATTTTGGACTGTCGTGGCAGGGGTGGCCTTACTGCCATCCCTGCCAAACTCCCGGAGACTATGACAGAGgtgttagtaaaaagttggatacctaattttagacagcaacacactaatattg Alignment from CESAR gcCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAG---GGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGat ctagtttaagagtctctgagcgctttttcaacttttatcctttctaacaggcCAGGGGAGAGCAGCAGGGGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAACCATGTGTAGCTGCAGCAGTAGCATTTTGGACTGTCGTGGCAGGGGTGGCCTTACTGCCATCCCTGCCAAACTCCCGGAGACTATGACAGAGgtgttagtaaaaagttggatacctaattttagacagcaacacactaatattg Alignment from Spaln_aa2Genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAG---GGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttaagagtctctgagcgctttttcaacttttatcctttctaacagGCCAGGGGAGAGCAGCAGGGGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAACCATGTGTAGCTGCAGCAGTAGCATTTTGGACTGTCGTGGCAGGGGTGGCCTTACTGCCATCCCTGCCAAACTCCCGGAGACTATGACAGAGGTgttagtaaaaagttggatacctaattttagacagcaacacactaatattg Alignment from Spaln_nt2Genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAG---GGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttaagagtctctgagcgctttttcaacttttatcctttctaacagGCCAGGGGAGAGCAGCAGGGGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAACCATGTGTAGCTGCAGCAGTAGCATTTTGGACTGTCGTGGCAGGGGTGGCCTTACTGCCATCCCTGCCAAACTCCCGGAGACTATGACAGAGGTgttagtaaaaagttggatacctaattttagacagcaacacactaatattg Alignment from Pairagon GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAG---GGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttaagagtctctgagcgctttttcaacttttatcctttctaacagGCCAGGGGAGAGCAGCAGGGGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAACCATGTGTAGCTGCAGCAGTAGCATTTTGGACTGTCGTGGCAGGGGTGGCCTTACTGCCATCCCTGCCAAACTCCCGGAGACTATGACAGAGGTgttagtaaaaagttggatacctaattttagacagcaacacactaatattg Alignment from Exonerate_protein2genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAG---GGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttaagagtctctgagcgctttttcaacttttatcctttctaacagGCCAGGGGAGAGCAGCAGGGGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAACCATGTGTAGCTGCAGCAGTAGCATTTTGGACTGTCGTGGCAGGGGTGGCCTTACTGCCATCCCTGCCAAACTCCCGGAGACTATGACAGAGGTgttagtaaaaagttggatacctaattttagacagcaacacactaatattg Alignment from Exonerate_coding2genome ctagtttaagagtctctgagcgctttttcaacttttatcctttctaacaggccaggggagagcagcaggggcacctacttgcaccctctcatcaggttcctgcccaaccatgtgtagctgcagcagtagcattttggactgtcgtggcaggggtggccttactgccatccctgccaaactcccggagactatgacagaggtgttagtaaaaagttggatacctaattttagacagcaacacactaatattg Alignment from GeneWise GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGC---CTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ctagtttaagagtctctgagcgctttttcaacttttatcctttctaacagGCCAGGGGAGAGCAGCAGGGGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAACCATGTGTAGCTGCAGCAGTAGCATTTTGGACTGTCGTGGCAGGGGTGGCCTTACTGCCATCCCTGCCAAACTCCCGGAGACTATGACAGAGGTgttagtaaaaagttggatacctaattttagacagcaacacactaatattg #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt caggtgtgattagctctcttggtccattgcttttactttttcttttccagtCCATTCAATAATAATAACATCAGTGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTttgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from CESAR gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt caggtgtgattagctctcttggtccattgcttttactttttcttttccagtCCATTCAATAATAATAACATCAGTGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTttgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT caggtgtgattagctctcttggtccattgcttttactttttcttttccagTCCATTCAATAATAATAACATCAGTGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTTTgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT caggtgtgattagctctcttggtccattgcttttactttttcttttccagTCCATTCAATAATAATAACATCAGTGCTATCC------CCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from Pairagon GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT caggtgtgattagctctcttggtccattgcttttactttttcttttccagTCCATTCAATAATAATAACATCAGTGCTATCC------CCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT caggtgtgattagctctcttggtccattgcttttactttttcttttccagTCCATTCAATAATAATAACATCAGTGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTTTgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from Exonerate_coding2genome caggtgtgattagctctcttggtccattgcttttactttttcttttccagtccattcaataataataacatcagtgctatcccccgtttcaatcatatccctaagctccacactttgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT caggtgtgattagctctcttggtccattgcttttactttttcttttccagTCCATTCAATAATAATAACATCAGTGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTTTgtcagtttgcaactgctggtgtatcacctacactatggataaggtgccat #### Slit1_ID8233_6 --> 1 - 2 Original Alignment aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagaCAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCTACGTGGATTGGATGTTctgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from CESAR aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagaCAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCTACGTGGATTGGATGTTctgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from Spaln_aa2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCTACGTGGATTGGATGTTCTgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from Spaln_nt2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCTACGTGGATTGGATGTTCTgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from Pairagon ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCTACGTGGATTGGATGTTCTgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from Exonerate_protein2genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCTACGTGGATTGGATGTTCTgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from Exonerate_coding2genome tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagacagctggacaagaaccgcattagctgcatcaaggaaggggccctccgtgccctacgtggattggatgttctgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg Alignment from GeneWise ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT tgccaaaactattcttgtggtcactttcgaaactcatttacttccaacagACAGCTGGACAAGAACCGCATTAGCTGCATCAAGGAAGGGGCCCTCCGTGCCCTACGTGGATTGGATGTTCTgtaagaggagtatgaagatgaaattagtgcatcaacattgttatccaatg #### Slk_ID10246_2 --> 0 - 0 Original Alignment GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG aatgtagtgacattcactatgatccattccttcctttctgtctctcacagGCCCAGAACAAAGAGACGAATGTCTTAGCTGCTGCGAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGACTATATGGTAAAGATTGACATATTAGCATCCTGTGACCACCCTAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagaaatttgcactccactacaaagaacttgaagcttggtaatcatgt Alignment from CESAR GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG aatgtagtgacattcactatgatccattccttcctttctgtctctcacagGCCCAGAACAAAGAGACGAATGTCTTAGCTGCTGCGAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGACTATATGGTAAAGATTGACATATTAGCATCCTGTGACCACCCTAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagaaatttgcactccactacaaagaacttgaagcttggtaatcatgt Alignment from Spaln_aa2Genome GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG aatgtagtgacattcactatgatccattccttcctttctgtctctcacagGCCCAGAACAAAGAGACGAATGTCTTAGCTGCTGCGAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGACTATATGGTAAAGATTGACATATTAGCATCCTGTGACCACCCTAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagaaatttgcactccactacaaagaacttgaagcttggtaatcatgt Alignment from Spaln_nt2Genome GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG aatgtagtgacattcactatgatccattccttcctttctgtctctcacagGCCCAGAACAAAGAGACGAATGTCTTAGCTGCTGCGAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGACTATATGGTAAAGATTGACATATTAGCATCCTGTGACCACCCTAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagaaatttgcactccactacaaagaacttgaagcttggtaatcatgt Alignment from Pairagon GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG aatgtagtgacattcactatgatccattccttcctttctgtctctcacagGCCCAGAACAAAGAGACGAATGTCTTAGCTGCTGCGAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGACTATATGGTAAAGATTGACATATTAGCATCCTGTGACCACCCTAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagaaatttgcactccactacaaagaacttgaagcttggtaatcatgt Alignment from Exonerate_protein2genome GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG aatgtagtgacattcactatgatccattccttcctttctgtctctcacagGCCCAGAACAAAGAGACGAATGTCTTAGCTGCTGCGAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGACTATATGGTAAAGATTGACATATTAGCATCCTGTGACCACCCTAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagaaatttgcactccactacaaagaacttgaagcttggtaatcatgt Alignment from Exonerate_coding2genome AAGGCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG aatgtagtgacattcactatgatccattccttcctttctgtctctcaCAGGCCCAGAACAAAGAGACGAATGTCTTAGCTGCTGCGAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGACTATATGGTAAAGATTGACATATTAGCATCCTGTGACCACCCTAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagaaatttgcactccactacaaagaacttgaagcttggtaatcatgt Alignment from GeneWise GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG aatgtagtgacattcactatgatccattccttcctttctgtctctcacagGCCCAGAACAAAGAGACGAATGTCTTAGCTGCTGCGAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGACTATATGGTAAAGATTGACATATTAGCATCCTGTGACCACCCTAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagaaatttgcactccactacaaagaacttgaagcttggtaatcatgt #### Slk_ID10248_4 --> 2 - 1 Original Alignment aaCTT---GAGAGACCATTAACTGAATCCCAAATCCAAGTAGTCTGCAAGCAGACATTAGAGGCATTGAATTACTTACATGACAATAAAATCATCCACCGAGATCTAAAAGCTGGCAATATTCTCTTTACCTTAGATGGAGACATTAAATTAg tccatcccatgcctctgatgcttggcctttcttgtctgccttggtttcagagCTCATTGAGCGACCATCC---AAGTCACAAATCCAAGTAGTTTGCCAACTGACATTAGAGGCATTGAATTATTTGCATGACAATATAATCAGACACCGAGATCTTAAAGTAGGGAATATCCTCTTCACCCTGGATGGAGACATCAAGTTAggtgaaacttggtgagtagcctgcatcctgtcttgcctcctgtgccatgag Alignment from CESAR aaCTT---GAGAGACCATTAACTGAATCCCAAATCCAAGTAGTCTGCAAGCAGACATTAGAGGCATTGAATTACTTACATGACAATAAAATCATCCACCGAGATCTAAAAGCTGGCAATATTCTCTTTACCTTAGATGGAGACATTAAATTAg tccatcccatgcctctgatgcttggcctttcttgtctgccttggtttcagagCTCATTGAGCGACCA---TCCAAGTCACAAATCCAAGTAGTTTGCCAACTGACATTAGAGGCATTGAATTATTTGCATGACAATATAATCAGACACCGAGATCTTAAAGTAGGGAATATCCTCTTCACCCTGGATGGAGACATCAAGTTAggtgaaacttggtgagtagcctgcatcctgtcttgcctcctgtgccatgag Alignment from Spaln_aa2Genome AACTTGAGAGACCATTAACTGAATCCCAAATCCAAGTAGTCTGCAAGCAGACATTAGAGGCATTGAATTACTTACATGACAATAAAATCATCCACCGAGATCTAAAAGCTGGCAATATTCTCTTTACCTTAGATGGAGACATTAAATTAG tccatcccatgcctctgatgcttggcctttcttgtctgccttggtttcagAGCTCATTGAGCGACCATCCAAGTCACAAATCCAAGTAGTTTGCCAACTGACATTAGAGGCATTGAATTATTTGCATGACAATATAATCAGACACCGAGATCTTAAAGTAGGGAATATCCTCTTCACCCTGGATGGAGACATCAAGTTAGgtgaaacttggtgagtagcctgcatcctgtcttgcctcctgtgccatgag Alignment from Spaln_nt2Genome AACT---TGAGAGACCATTAACTGAATCCCAAATCCAAGTAGTCTGCAAGCAGACATTAGAGGCATTGAATTACTTACATGACAATAAAATCATCCACCGAGATCTAAAAGCTGGCAATATTCTCTTTACCTTAGATGGAGACATTAAATTAG tccatcccatgcctctgatgcttggcctttcttgtctgccttggtttcagAGCTCATTGAGCGACCAT---CCAAGTCACAAATCCAAGTAGTTTGCCAACTGACATTAGAGGCATTGAATTATTTGCATGACAATATAATCAGACACCGAGATCTTAAAGTAGGGAATATCCTCTTCACCCTGGATGGAGACATCAAGTTAGgtgaaacttggtgagtagcctgcatcctgtcttgcctcctgtgccatgag Alignment from Pairagon TCCCAAATCCAAGTAGTCTGCAAGCAGACATTAGAGGCATTGAATTACTTACATGACAATAAAATCATCCACCGAGATCTAAAAGCTGGCAATATTCTCTTTACCTTAGATGGAGACATTAAATTAG tccatcccatgcctctgatgcttggcctttcttgtctgccttggtttcagagctcattgagcgaccatccaagTCACAAATCCAAGTAGTTTGCCAACTGACATTAGAGGCATTGAATTATTTGCATGACAATATAATCAGACACCGAGATCTTAAAGTAGGGAATATCCTCTTCACCCTGGATGGAGACATCAAGTTAGgtgaaacttggtgagtagcctgcatcctgtcttgcctcctgtgccatgag Alignment from Exonerate_protein2genome AACTTGAGAGACCATTAACTGAATCCCAAATCCAAGTAGTCTGCAAGCAGACATTAGAGGCATTGAATTACTTACATGACAATAAAATCATCCACCGAGATCTAAAAGCTGGCAATATTCTCTTTACCTTAGATGGAGACATTAAATTAG tccatcccatgcctctgatgcttggcctttcttgtctgccttggtttcagAGCTCATTGAGCGACCATCCAAGTCACAAATCCAAGTAGTTTGCCAACTGACATTAGAGGCATTGAATTATTTGCATGACAATATAATCAGACACCGAGATCTTAAAGTAGGGAATATCCTCTTCACCCTGGATGGAGACATCAAGTTAGgtgaaacttggtgagtagcctgcatcctgtcttgcctcctgtgccatgag Alignment from Exonerate_coding2genome AACTTGAGAGACCATTAACTGAATCCCAAATCCAAGTAGTCTGCAAGCAGACATTAGAGGCATTGAATTACTTACATGACAATAAAATCATCCACCGAGATCTAAAAGCTGGCAATATTCTCTTTACCTTAGATGGAGACATTAAATTAG tccatcccatgcctctgatgcttggcctttcttgtctgccttggtttcagAGCTCATTGAGCGACCATCCAAGTCACAAATCCAAGTAGTTTGCCAACTGACATTAGAGGCATTGAATTATTTGCATGACAATATAATCAGACACCGAGATCTTAAAGTAGGGAATATCCTCTTCACCCTGGATGGAGACATCAAGTTAGgtgaaacttggtgagtagcctgcatcctgtcttgcctcctgtgccatgag Alignment from GeneWise --GAACTTGAGAGACCATTAACTGAATCCCAAATCCAAGTAGTCTGCAAGCAGACATTAGAGGCATTGAATTACTTACATGACAATAAAATCATCCACCGAGATCTAAAAGCTGGCAATATTCTCTTTACCTTAGATGGAGACATTAAATTAG tccatcccatgcctctgatgcttggcctttcttgtctgccttggtttcagAGCTCATTGAGCGACCA---TCCAAGTCACAAATCCAAGTAGTTTGCCAACTGACATTAGAGGCATTGAATTATTTGCATGACAATATAATCAGACACCGAGATCTTAAAGTAGGGAATATCCTCTTCACCCTGGATGGAGACATCAAGTTAGgtgaaacttggtgagtagcctgcatcctgtcttgcctcctgtgccatgag #### Smarca2_ID5728_10 --> 0 - 2 Original Alignment CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTgg ttgcatggcccctcccttgttattattgaccagagatcttttctcttcagCCAATAGCCAAAAGCAGCCAGACAAGTGACTTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTCGGCCCAGAAGTACCCAAAGCCAGCAAGCTTGACACTTGGGTGAAAATGAATCCAgggtgagtcaatttcttggctgtcctaatcataggactagctcatagttagt Alignment from CESAR CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTgg ttgcatggcccctcccttgttattattgaccagagatcttttctcttcagCCAATAGCCAAAAGCAGCCAGACAAGTGACTTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTCGGCCCAGAAGTACCCAAAGCCAGCAAGCTTGACACTTGGGTGAAAATGAATCCAgggtgagtcaatttcttggctgtcctaatcataggactagctcatagttagt Alignment from Spaln_aa2Genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgcatggcccctcccttgttattattgaccagagatcttttctcttcagCCAATAGCCAAAAGCAGCCAGACAAGTGACTTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTCGGCCCAGAAGTACCCAAAGCCAGCAAGCTTGACACTTGGGTGAAAATGAATCCAGGgtgagtcaatttcttggctgtcctaatcataggactagctcatagttagt Alignment from Spaln_nt2Genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgcatggcccctcccttgttattattgaccagagatcttttctcttcagCCAATAGCCAAAAGCAGCCAGACAAGTGACTTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTCGGCCCAGAAGTACCCAAAGCCAGCAAGCTTGACACTTGGGTGAAAATGAATCCAGGgtgagtcaatttcttggctgtcctaatcataggactagctcatagttagt Alignment from Pairagon CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgcatggcccctcccttgttattattgaccagagatcttttctcttcagCCAATAGCCAAAAGCAGCCAGACAAGTGACTTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTCGGCCCAGAAGTACCCAAAGCCAGCAAGCTTGACACTTGGGTGAAAATGAATCCAGGgtgagtcaatttcttggctgtcctaatcataggactagctcatagttagt Alignment from Exonerate_protein2genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgcatggcccctcccttgttattattgaccagagatcttttctcttcagCCAATAGCCAAAAGCAGCCAGACAAGTGACTTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTCGGCCCAGAAGTACCCAAAGCCAGCAAGCTTGACACTTGGGTGAAAATGAATCCAGGgtgagtcaatttcttggctgtcctaatcataggactagctcatagttagt Alignment from Exonerate_coding2genome GAGCCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgcatggcccctcccttgttattattgaccagagatcttttctcttCAGCCAATAGCCAAAAGCAGCCAGACAAGTGACTTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTCGGCCCAGAAGTACCCAAAGCCAGCAAGCTTGACACTTGGGTGAAAATGAATCCAGGgtgagtcaatttcttggctgtcctaatcataggactagctcatagttagt Alignment from GeneWise CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgcatggcccctcccttgttattattgaccagagatcttttctcttcagCCAATAGCCAAAAGCAGCCAGACAAGTGACTTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTCGGCCCAGAAGTACCCAAAGCCAGCAAGCTTGACACTTGGGTGAAAATGAATCCAGGgtgagtcaatttcttggctgtcctaatcataggactagctcatagttagt #### Smarca2_ID5729_11 --> 1 - 0 Original Alignment tTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG caggctggcccccattctctttccagtcactctttctctctatttaacagtTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtagggagtactacttcatgggagtaactgaagcaacacgttcaaggact Alignment from CESAR tTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG caggctggcccccattctctttccagtcactctttctctctatttaacagtTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtagggagtactacttcatgggagtaactgaagcaacacgttcaaggact Alignment from Spaln_aa2Genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG caggctggcccccattctctttccagtcactctttctctctatttaacagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtagggagtactacttcatgggagtaactgaagcaacacgttcaaggact Alignment from Spaln_nt2Genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG caggctggcccccattctctttccagtcactctttctctctatttaacagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtagggagtactacttcatgggagtaactgaagcaacacgttcaaggact Alignment from Pairagon TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG caggctggcccccattctctttccagtcactctttctctctatttaacagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtagggagtactacttcatgggagtaactgaagcaacacgttcaaggact Alignment from Exonerate_protein2genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG caggctggcccccattctctttccagtcactctttctctctatttaacagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtagggagtactacttcatgggagtaactgaagcaacacgttcaaggact Alignment from Exonerate_coding2genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG caggctggcccccattctctttccagtcactctttctctctatttaacagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtagggagtactacttcatgggagtaactgaagcaacacgttcaaggact Alignment from GeneWise TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG caggctggcccccattctctttccagtcactctttctctctatttaacagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtagggagtactacttcatgggagtaactgaagcaacacgttcaaggact #### Smarca2_ID5732_14 --> 0 - 2 Original Alignment CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCtc tgtggttaatggtcctatttagtaactgagcatctctgtttctcccttagCTCCAGGGCCTGGACTGGATGGTTTCACTGTATAATAACAATCTAAATGGAATCTTGGCTGATGAAATGGGTCTGGGCAAGACCATCAAGACCATTGCACTCATTACGTACCTGATGGAGCACAAGAGGCTGAATGGGCCCTACCTCATCCTCATCCCATTGttgtaagaacataggaggcagaagcaatgattatttaagttgcaataaggta Alignment from CESAR CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCtc tgtggttaatggtcctatttagtaactgagcatctctgtttctcccttagCTCCAGGGCCTGGACTGGATGGTTTCACTGTATAATAACAATCTAAATGGAATCTTGGCTGATGAAATGGGTCTGGGCAAGACCATCAAGACCATTGCACTCATTACGTACCTGATGGAGCACAAGAGGCTGAATGGGCCCTACCTCATCCTCATCCCATTGttgtaagaacataggaggcagaagcaatgattatttaagttgcaataaggta Alignment from Spaln_aa2Genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC tgtggttaatggtcctatttagtaactgagcatctctgtttctcccttagCTCCAGGGCCTGGACTGGATGGTTTCACTGTATAATAACAATCTAAATGGAATCTTGGCTGATGAAATGGGTCTGGGCAAGACCATCAAGACCATTGCACTCATTACGTACCTGATGGAGCACAAGAGGCTGAATGGGCCCTACCTCATCCTCATCCCATTGTTgtaagaacataggaggcagaagcaatgattatttaagttgcaataaggta Alignment from Spaln_nt2Genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC tgtggttaatggtcctatttagtaactgagcatctctgtttctcccttagCTCCAGGGCCTGGACTGGATGGTTTCACTGTATAATAACAATCTAAATGGAATCTTGGCTGATGAAATGGGTCTGGGCAAGACCATCAAGACCATTGCACTCATTACGTACCTGATGGAGCACAAGAGGCTGAATGGGCCCTACCTCATCCTCATCCCATTGTTgtaagaacataggaggcagaagcaatgattatttaagttgcaataaggta Alignment from Pairagon CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC tgtggttaatggtcctatttagtaactgagcatctctgtttctcccttagCTCCAGGGCCTGGACTGGATGGTTTCACTGTATAATAACAATCTAAATGGAATCTTGGCTGATGAAATGGGTCTGGGCAAGACCATCAAGACCATTGCACTCATTACGTACCTGATGGAGCACAAGAGGCTGAATGGGCCCTACCTCATCCTCATCCCATTGTTgtaagaacataggaggcagaagcaatgattatttaagttgcaataaggta Alignment from Exonerate_protein2genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC tgtggttaatggtcctatttagtaactgagcatctctgtttctcccttagCTCCAGGGCCTGGACTGGATGGTTTCACTGTATAATAACAATCTAAATGGAATCTTGGCTGATGAAATGGGTCTGGGCAAGACCATCAAGACCATTGCACTCATTACGTACCTGATGGAGCACAAGAGGCTGAATGGGCCCTACCTCATCCTCATCCCATTGTTgtaagaacataggaggcagaagcaatgattatttaagttgcaataaggta Alignment from Exonerate_coding2genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC tgtggttaatggtcctatttagtaactgagcatctctgtttctcccttagCTCCAGGGCCTGGACTGGATGGTTTCACTGTATAATAACAATCTAAATGGAATCTTGGCTGATGAAATGGGTCTGGGCAAGACCATCAAGACCATTGCACTCATTACGTACCTGATGGAGCACAAGAGGCTGAATGGGCCCTACCTCATCCTCATCCCATTGTTgtaagaacataggaggcagaagcaatgattatttaagttgcaataaggta Alignment from GeneWise CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC tgtggttaatggtcctatttagtaactgagcatctctgtttctcccttagCTCCAGGGCCTGGACTGGATGGTTTCACTGTATAATAACAATCTAAATGGAATCTTGGCTGATGAAATGGGTCTGGGCAAGACCATCAAGACCATTGCACTCATTACGTACCTGATGGAGCACAAGAGGCTGAATGGGCCCTACCTCATCCTCATCCCATTGTTgtaagaacataggaggcagaagcaatgattatttaagttgcaataaggta #### Smarca2_ID5734_15 --> 1 - 0 Original Alignment gACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG agcagatctgcttgctagtttcttaactaacctgtcattatgttttataggAGCTTGTTTAATTGGACATATGAGTTTGACAGATGGGCCCCTACAGTGGTGAAAATTGCTTACAAGgcaagtatcacacgctataacaaatcacatgctacaacatatgtggaata Alignment from CESAR gACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG agcagatctgcttgctagtttcttaactaacctgtcattatgttttataggAGCTTGTTTAATTGGACATATGAGTTTGACAGATGGGCCCCTACAGTGGTGAAAATTGCTTACAAGgcaagtatcacacgctataacaaatcacatgctacaacatatgtggaata Alignment from Spaln_aa2Genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG agcagatctgcttgctagtttcttaactaacctgtcattatgttttatagGAGCTTGTTTAATTGGACATATGAGTTTGACAGATGGGCCCCTACAGTGGTGAAAATTGCTTACAAGgcaagtatcacacgctataacaaatcacatgctacaacatatgtggaata Alignment from Spaln_nt2Genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG agcagatctgcttgctagtttcttaactaacctgtcattatgttttatagGAGCTTGTTTAATTGGACATATGAGTTTGACAGATGGGCCCCTACAGTGGTGAAAATTGCTTACAAGgcaagtatcacacgctataacaaatcacatgctacaacatatgtggaata Alignment from Pairagon GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG agcagatctgcttgctagtttcttaactaacctgtcattatgttttatagGAGCTTGTTTAATTGGACATATGAGTTTGACAGATGGGCCCCTACAGTGGTGAAAATTGCTTACAAGgcaagtatcacacgctataacaaatcacatgctacaacatatgtggaata Alignment from Exonerate_protein2genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG agcagatctgcttgctagtttcttaactaacctgtcattatgttttatagGAGCTTGTTTAATTGGACATATGAGTTTGACAGATGGGCCCCTACAGTGGTGAAAATTGCTTACAAGgcaagtatcacacgctataacaaatcacatgctacaacatatgtggaata Alignment from Exonerate_coding2genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG agcagatctgcttgctagtttcttaactaacctgtcattatgttttatagGAGCTTGTTTAATTGGACATATGAGTTTGACAGATGGGCCCCTACAGTGGTGAAAATTGCTTACAAGgcaagtatcacacgctataacaaatcacatgctacaacatatgtggaata Alignment from GeneWise GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAGGGT- agcagatctgcttgctagtttcttaactaacctgtcattatgttttatagGAGCTTGTTTAATTGGACATATGAGTTTGACAGATGGGCCCCTACAGTGGTGAAAATTGCTTACAAGGCAAgtatcacacgctataacaaatcacatgctacaacatatgtggaata #### Smarca2_ID5745_22 --> 1 - 1 Original Alignment gGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACg cgttaaagtttctagccctcctactctttcatctccttcctctctctcaggGCTGAACTGTATAGGGCACCAGGAACATTTGAGCTACTTGACTGTATTTTACCCCAATTGAGAGCAACTAACCATCGAGTGTTACTTTTTTGCCAGATGACCTCATTGATGACCTTAATGGAATATCCCTTTGCTTTCCAGAACTTCTTATATCTTCGGCTTGATggtaagagtctgggactcttgattaagtggattcccacaaaaggattcata Alignment from CESAR gGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACg cgttaaagtttctagccctcctactctttcatctccttcctctctctcaggGCTGAACTGTATAGGGCACCAGGAACATTTGAGCTACTTGACTGTATTTTACCCCAATTGAGAGCAACTAACCATCGAGTGTTACTTTTTTGCCAGATGACCTCATTGATGACCTTAATGGAATATCCCTTTGCTTTCCAGAACTTCTTATATCTTCGGCTTGATggtaagagtctgggactcttgattaagtggattcccacaaaaggattcata Alignment from Spaln_aa2Genome GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG cgttaaagtttctagccctcctactctttcatctccttcctctctctcagGGCTGAACTGTATAGGGCACCAGGAACATTTGAGCTACTTGACTGTATTTTACCCCAATTGAGAGCAACTAACCATCGAGTGTTACTTTTTTGCCAGATGACCTCATTGATGACCTTAATGGAATATCCCTTTGCTTTCCAGAACTTCTTATATCTTCGGCTTGATGgtaagagtctgggactcttgattaagtggattcccacaaaaggattcata Alignment from Spaln_nt2Genome GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG cgttaaagtttctagccctcctactctttcatctccttcctctctctcagGGCTGAACTGTATAGGGCACCAGGAACATTTGAGCTACTTGACTGTATTTTACCCCAATTGAGAGCAACTAACCATCGAGTGTTACTTTTTTGCCAGATGACCTCATTGATGACCTTAATGGAATATCCCTTTGCTTTCCAGAACTTCTTATATCTTCGGCTTGATGgtaagagtctgggactcttgattaagtggattcccacaaaaggattcata Alignment from Pairagon GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG cgttaaagtttctagccctcctactctttcatctccttcctctctctcagGGCTGAACTGTATAGGGCACCAGGAACATTTGAGCTACTTGACTGTATTTTACCCCAATTGAGAGCAACTAACCATCGAGTGTTACTTTTTTGCCAGATGACCTCATTGATGACCTTAATGGAATATCCCTTTGCTTTCCAGAACTTCTTATATCTTCGGCTTGATGgtaagagtctgggactcttgattaagtggattcccacaaaaggattcata Alignment from Exonerate_protein2genome GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG cgttaaagtttctagccctcctactctttcatctccttcctctctctcagGGCTGAACTGTATAGGGCACCAGGAACATTTGAGCTACTTGACTGTATTTTACCCCAATTGAGAGCAACTAACCATCGAGTGTTACTTTTTTGCCAGATGACCTCATTGATGACCTTAATGGAATATCCCTTTGCTTTCCAGAACTTCTTATATCTTCGGCTTGATGgtaagagtctgggactcttgattaagtggattcccacaaaaggattcata Alignment from Exonerate_coding2genome GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG cgttaaagtttctagccctcctactctttcatctccttcctctctctcagGGCTGAACTGTATAGGGCACCAGGAACATTTGAGCTACTTGACTGTATTTTACCCCAATTGAGAGCAACTAACCATCGAGTGTTACTTTTTTGCCAGATGACCTCATTGATGACCTTAATGGAATATCCCTTTGCTTTCCAGAACTTCTTATATCTTCGGCTTGATGgtaagagtctgggactcttgattaagtggattcccacaaaaggattcata Alignment from GeneWise GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG cgttaaagtttctagccctcctactctttcatctccttcctctctctcagGGCTGAACTGTATAGGGCACCAGGAACATTTGAGCTACTTGACTGTATTTTACCCCAATTGAGAGCAACTAACCATCGAGTGTTACTTTTTTGCCAGATGACCTCATTGATGACCTTAATGGAATATCCCTTTGCTTTCCAGAACTTCTTATATCTTCGGCTTGATGgtaagagtctgggactcttgattaagtggattcccacaaaaggattcata #### Smarca2_ID5763_30 --> 0 - 1 Original Alignment ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGg aggagtatgtggcaaggtttttcagccatggtctgtggcgtctttcaaagATCTATGAGGATTCTATAGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAGATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGACGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGggtaagtttgtgcctgatctacttacatcttgcacgcttacaccaagctag Alignment from CESAR ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGg aggagtatgtggcaaggtttttcagccatggtctgtggcgtctttcaaagATCTATGAGGATTCTATAGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAGATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGACGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGggtaagtttgtgcctgatctacttacatcttgcacgcttacaccaagctag Alignment from Spaln_aa2Genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG aggagtatgtggcaaggtttttcagccatggtctgtggcgtctttcaaagATCTATGAGGATTCTATAGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAGATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGACGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagtttgtgcctgatctacttacatcttgcacgcttacaccaagctag Alignment from Spaln_nt2Genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG aggagtatgtggcaaggtttttcagccatggtctgtggcgtctttcaaagATCTATGAGGATTCTATAGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAGATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGACGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagtttgtgcctgatctacttacatcttgcacgcttacaccaagctag Alignment from Pairagon ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG aggagtatgtggcaaggtttttcagccatggtctgtggcgtctttcaaagATCTATGAGGATTCTATAGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAGATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGACGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagtttgtgcctgatctacttacatcttgcacgcttacaccaagctag Alignment from Exonerate_protein2genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG aggagtatgtggcaaggtttttcagccatggtctgtggcgtctttcaaagATCTATGAGGATTCTATAGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAGATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGACGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagtttgtgcctgatctacttacatcttgcacgcttacaccaagctag Alignment from Exonerate_coding2genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG aggagtatgtggcaaggtttttcagccatggtctgtggcgtctttcaaagATCTATGAGGATTCTATAGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAGATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGACGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagtttgtgcctgatctacttacatcttgcacgcttacaccaagctag Alignment from GeneWise ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG aggagtatgtggcaaggtttttcagccatggtctgtggcgtctttcaaagATCTATGAGGATTCTATAGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAGATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGACGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagtttgtgcctgatctacttacatcttgcacgcttacaccaagctag #### Smc3_ID11315_3 --> 2 - 1 Original Alignment tgGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATg gcatgatcgggtttgctattaacatagcaagtacttttgttggtttctagtgGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATggtatgtgtagtgttgtgtatagggtatactgaaagatagcaatgcggggc Alignment from CESAR tgGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATg gcatgatcgggtttgctattaacatagcaagtacttttgttggtttctagtgGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATggtatgtgtagtgttgtgtatagggtatactgaaagatagcaatgcggggc Alignment from Spaln_aa2Genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG gcatgatcgggtttgctattaacatagcaagtacttttgttggtttctagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtatgtgtagtgttgtgtatagggtatactgaaagatagcaatgcggggc Alignment from Spaln_nt2Genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG gcatgatcgggtttgctattaacatagcaagtacttttgttggtttctagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtatgtgtagtgttgtgtatagggtatactgaaagatagcaatgcggggc Alignment from Pairagon TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG gcatgatcgggtttgctattaacatagcaagtacttttgttggtttctagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtatgtgtagtgttgtgtatagggtatactgaaagatagcaatgcggggc Alignment from Exonerate_protein2genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG gcatgatcgggtttgctattaacatagcaagtacttttgttggtttctagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtatgtgtagtgttgtgtatagggtatactgaaagatagcaatgcggggc Alignment from Exonerate_coding2genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG gcatgatcgggtttgctattaacatagcaagtacttttgttggtttctagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtatgtgtagtgttgtgtatagggtatactgaaagatagcaatgcggggc Alignment from GeneWise TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG gcatgatcgggtttgctattaacatagcaagtacttttgttggtttctagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtatgtgtagtgttgtgtatagggtatactgaaagatagcaatgcggggc #### Smc3_ID11316_4 --> 2 - 0 Original Alignment caATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT aatggccatgaccaaaatcagagggagaaaggctctgtctcctcactcagccATTCAGTTTGTTCTAAGTGATGAATTCAGTCATCTTCATCCAGAGCAAGGATTGGCACTGTTACATgtgagtagagtgagtaactacaaacagggcttcactgatgaaaggagaac Alignment from CESAR caATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT aatggccatgaccaaaatcagagggagaaaggctctgtctcctcactcagccATTCAGTTTGTTCTAAGTGATGAATTCAGTCATCTTCATCCAGAGCAAGGATTGGCACTGTTACATgtgagtagagtgagtaactacaaacagggcttcactgatgaaaggagaac Alignment from Spaln_aa2Genome CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT aatggccatgaccaaaatcagagggagaaaggctctgtctcctcactcagCCATTCAGTTTGTTCTAAGTGATGAATTCAGTCATCTTCATCCAGAGCAAGGATTGGCACTGTTACATgtgagtagagtgagtaactacaaacagggcttcactgatgaaaggagaac Alignment from Spaln_nt2Genome CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT aatggccatgaccaaaatcagagggagaaaggctctgtctcctcactcagCCATTCAGTTTGTTCTAAGTGATGAATTCAGTCATCTTCATCCAGAGCAAGGATTGGCACTGTTACATgtgagtagagtgagtaactacaaacagggcttcactgatgaaaggagaac Alignment from Pairagon CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT aatggccatgaccaaaatcagagggagaaaggctctgtctcctcactcagCCATTCAGTTTGTTCTAAGTGATGAATTCAGTCATCTTCATCCAGAGCAAGGATTGGCACTGTTACATgtgagtagagtgagtaactacaaacagggcttcactgatgaaaggagaac Alignment from Exonerate_protein2genome CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT aatggccatgaccaaaatcagagggagaaaggctctgtctcctcactcagCCATTCAGTTTGTTCTAAGTGATGAATTCAGTCATCTTCATCCAGAGCAAGGATTGGCACTGTTACATgtgagtagagtgagtaactacaaacagggcttcactgatgaaaggagaac Alignment from Exonerate_coding2genome CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCATGAGGGTACA aatggccatgaccaaaatcagagggagaaaggctctgtctcctcactcagCCATTCAGTTTGTTCTAAGTGATGAATTCAGTCATCTTCATCCAGAGCAAGGATTGGCACTGTTACATGTGAGTAGAgtgagtaactacaaacagggcttcactgatgaaaggagaac Alignment from GeneWise CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT aatggccatgaccaaaatcagagggagaaaggctctgtctcctcactcagCCATTCAGTTTGTTCTAAGTGATGAATTCAGTCATCTTCATCCAGAGCAAGGATTGGCACTGTTACATgtgagtagagtgagtaactacaaacagggcttcactgatgaaaggagaac #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Exonerate_coding2genome GCTTTTGTGGAAATCATTTTTGACAATTCGGACAACC-----GGTTACCAATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATG AATAATCACCCAGAGACTGGGGGTTGTTAACTTTGGTTTTAATCTTACAGATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGgtcacgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactgggggttgttaactttggttttaatcttacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagtattctttctattcttaccaaccatagagtgttacagatgttcca #### Smc3_ID11320_8 --> 0 - 1 Original Alignment ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAg tgaaatgtcaataaccctgggcagtaccatggtcattgtcgcccgcgtagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAAGATACAggtatgataaatggatagattgtgtaatcaccctcatagctaggggtatat Alignment from CESAR ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAg tgaaatgtcaataaccctgggcagtaccatggtcattgtcgcccgcgtagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAAGATACAggtatgataaatggatagattgtgtaatcaccctcatagctaggggtatat Alignment from Spaln_aa2Genome ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG tgaaatgtcaataaccctgggcagtaccatggtcattgtcgcccgcgtagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAAGATACAGgtatgataaatggatagattgtgtaatcaccctcatagctaggggtatat Alignment from Spaln_nt2Genome ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG tgaaatgtcaataaccctgggcagtaccatggtcattgtcgcccgcgtagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAAGATACAGgtatgataaatggatagattgtgtaatcaccctcatagctaggggtatat Alignment from Pairagon ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG tgaaatgtcaataaccctgggcagtaccatggtcattgtcgcccgcgtagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAAGATACAGgtatgataaatggatagattgtgtaatcaccctcatagctaggggtatat Alignment from Exonerate_protein2genome ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG tgaaatgtcaataaccctgggcagtaccatggtcattgtcgcccgcgtagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAAGATACAGgtatgataaatggatagattgtgtaatcaccctcatagctaggggtatat Alignment from Exonerate_coding2genome ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG tgaaatgtcaataaccctgggcagtaccatggtcattgtcgcccgcgtagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAAGATACAGgtatgataaatggatagattgtgtaatcaccctcatagctaggggtatat Alignment from GeneWise ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG tgaaatgtcaataaccctgggcagtaccatggtcattgtcgcccgcgtagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAAGATACAGgtatgataaatggatagattgtgtaatcaccctcatagctaggggtatat #### Smc3_ID11324_12 --> 0 - 2 Original Alignment AAACGTTTATTAAAAGAGAGGCAGAAGCTGCTTGAAAAAATAGAAGAAAAGCAGAAAGAACTGGCAGAAACAGAACCTAAATTCAACAGCGTAAAAGAAAAAGAAGAGCGAGGAATTGCGag gacaagccagagccagtaagccagttgtctacctcctttgtgcactgcagAAACTTCTGTTGAAGGAAAGACAAAAGTTAATTAAAGAATCAGGAGAGAAGCAGAGGGAACTGGCAGAAACAACACCTAAATTCAACAGCGTTAAAGAGAAAGAAGGGCAAGGAGGTGCAaggtaagggagatctgggaataggatatgcaaccaggaagggtgtaagatgg Alignment from CESAR AAACGTTTATTAAAAGAGAGGCAGAAGCTGCTTGAAAAAATAGAAGAAAAGCAGAAAGAACTGGCAGAAACAGAACCTAAATTCAACAGCGTAAAAGAAAAAGAAGAGCGAGGAATTGCGag gacaagccagagccagtaagccagttgtctacctcctttgtgcactgcagAAACTTCTGTTGAAGGAAAGACAAAAGTTAATTAAAGAATCAGGAGAGAAGCAGAGGGAACTGGCAGAAACAACACCTAAATTCAACAGCGTTAAAGAGAAAGAAGGGCAAGGAGGTGCAaggtaagggagatctgggaataggatatgcaaccaggaagggtgtaagatgg Alignment from Spaln_aa2Genome AAACGTTTATTAAAAGAGAGGCAGAAGCTGCTTGAAAAAATAGAAGAAAAGCAGAAAGAACTGGCAGAAACAGAACCTAAATTCAACAGCGTAAAAGAAAAAGAAGAGCGAGGAATTGCGAG gacaagccagagccagtaagccagttgtctacctcctttgtgcactgcagAAACTTCTGTTGAAGGAAAGACAAAAGTTAATTAAAGAATCAGGAGAGAAGCAGAGGGAACTGGCAGAAACAACACCTAAATTCAACAGCGTTAAAGAGAAAGAAGGGCAAGGAGGTGCAAGgtaagggagatctgggaataggatatgcaaccaggaagggtgtaagatgg Alignment from Spaln_nt2Genome AAACGTTTATTAAAAGAGAGGCAGAAGCTGCTTGAAAAAATAGAAGAAAAGCAGAAAGAACTGGCAGAAACAGAACCTAAATTCAACAGCGTAAAAGAAAAAGAAGAGCGAGGAATTGCGAG gacaagccagagccagtaagccagttgtctacctcctttgtgcactgcagAAACTTCTGTTGAAGGAAAGACAAAAGTTAATTAAAGAATCAGGAGAGAAGCAGAGGGAACTGGCAGAAACAACACCTAAATTCAACAGCGTTAAAGAGAAAGAAGGGCAAGGAGGTGCAAGgtaagggagatctgggaataggatatgcaaccaggaagggtgtaagatgg Alignment from Pairagon AAACGTTTATTAAAAGAGAGGCAGAAGCTGCTTGAAAAAATAGAAGAAAAGCAGAAAGAACTGGCAGAAACAGAACCTAAATTCAACAGCGTAAAAGAAAAAGAAGAGCGAGGAATTGCGAG gacaagccagagccagtaagccagttgtctacctcctttgtgcactgcagAAACTTCTGTTGAAGGAAAGACAAAAGTTAATTAAAGAATCAGGAGAGAAGCAGAGGGAACTGGCAGAAACAACACCTAAATTCAACAGCGTTAAAGAGAAAGAAGGGCAAGGAGGTGCAAGgtaagggagatctgggaataggatatgcaaccaggaagggtgtaagatgg Alignment from Exonerate_protein2genome AAACGTTTATTAAAAGAGAGGCAGAAGCTGCTTGAAAAAATAGAAGAAAAGCAGAAAGAACTGGCAGAAACAGAACCTAAATTCAACAGCGTAAAAGAAAAAGAAGAGCGAGGAATTGCGAG gacaagccagagccagtaagccagttgtctacctcctttgtgcactgcagAAACTTCTGTTGAAGGAAAGACAAAAGTTAATTAAAGAATCAGGAGAGAAGCAGAGGGAACTGGCAGAAACAACACCTAAATTCAACAGCGTTAAAGAGAAAGAAGGGCAAGGAGGTGCAAGgtaagggagatctgggaataggatatgcaaccaggaagggtgtaagatgg Alignment from Exonerate_coding2genome AAACGTTTATTAAAAGAGAGGCAGAAGCTGCTTGAAAAAATAGAAGAAAAGCAGAAAGAACTGGCAGAAACAGAACCTAAATTCAACAGCGTAAAAGAAAAAGAAGAGCGAGGAATTGCGAG gacaagccagagccagtaagccagttgtctacctcctttgtgcactgcagAAACTTCTGTTGAAGGAAAGACAAAAGTTAATTAAAGAATCAGGAGAGAAGCAGAGGGAACTGGCAGAAACAACACCTAAATTCAACAGCGTTAAAGAGAAAGAAGGGCAAGGAGGTGCAAGgtaagggagatctgggaataggatatgcaaccaggaagggtgtaagatgg Alignment from GeneWise AAACGTTTATTAAAAGAGAGGCAGAAGCTGCTTGAAAAAATAGAAGAAAAGCAGAAAGAACTGGCAGAAACAGAACCTAAATTCAACAGCGTAAAAGAAAAAGAAGAGCGAGGAATTGCGAG gacaagccagagccagtaagccagttgtctacctcctttgtgcactgcagAAACTTCTGTTGAAGGAAAGACAAAAGTTAATTAAAGAATCAGGAGAGAAGCAGAGGGAACTGGCAGAAACAACACCTAAATTCAACAGCGTTAAAGAGAAAGAAGGGCAAGGAGGTGCAAGgtaagggagatctgggaataggatatgcaaccaggaagggtgtaagatgg #### Smc3_ID11339_27 --> 0 - 1 Original Alignment GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAG---CAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAg tcatgtacctttttactttaaaaacacactttccttcattatcaatacagCTGTCATTTATGGGAAAACATGGTGAGATGAGAGATATGCAGCAGCAGCTCTCTGGAGGACAGAAATTGGCGGTAGCCCTTGTCCTTATCTTTGCAATTAAGAAGTGCGACCCT---CCATTCCACCTCTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAAATGGTGTCTggtacaaattgtcagctagaaaagacaaaaaccatccacatataaggccca Alignment from CESAR GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAG---CTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAg tcatgtacctttttactttaaaaacacactttccttcattatcaatacagCTGTCATTTATGGGAAAACATGGTGAGATGAGAGATATGCAGCAGCAGCTCTCTGGAGGACAGAAATTGGCGGTAGCCCTTGTCCTTATCTTTGCAATTAAGAAGTGCGACCCT---CCATTCCACCTCTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAAATGGTGTCTggtacaaattgtcagctagaaaagacaaaaaccatccacatataaggccca Alignment from Spaln_aa2Genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG tcatgtacctttttactttaaaaacacactttccttcattatcaatacagCTGTCATTTATGGGAAAACATGGTGAGATGAGAGATATGCAGCAGCAGCTCTCTGGAGGACAGAAATTGGCGGTAGCCCTTGTCCTTATCTTTGCAATTAAGAAGTGCGACCCT---CCATTCCACCTCTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAAATGGTGTCTGgtacaaattgtcagctagaaaagacaaaaaccatccacatataaggccca Alignment from Spaln_nt2Genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAGC---TCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG tcatgtacctttttactttaaaaacacactttccttcattatcaatacagCTGTCATTTATGGGAAAACATGGTGAGATGAGAGATATGCAGCAGCAGCTCTCTGGAGGACAGAAATTGGCGGTAGCCCTTGTCCTTATCTTTGCAATTAAGAAGTGCGACC---CTCCATTCCACCTCTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAAATGGTGTCTGgtacaaattgtcagctagaaaagacaaaaaccatccacatataaggccca Alignment from Pairagon -------------------------------------------------GGTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAAT---GCAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG TCATGTACCTTTTTACTTTAAAAACACACTTTCCTTCATTATCAATACAGCTGTCATTTATGGGAAAACATGGTGAGATGAGAGATATGCAGCAGCAGCTCTCTGGAGGACAGAAATTGGCGGTAGCCCTTGTCCTTATCTTTGCAATTAAGAAGTGCGACC---CTCCATTCCACCTCTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAAATGGTGTCTGgtacaaattgtcagctagaaaagacaaaaaccatccacatataaggccca Alignment from Exonerate_protein2genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG tcatgtacctttttactttaaaaacacactttccttcattatcaatacagCTGTCATTTATGGGAAAACATGGTGAGATGAGAGATATGCAGCAGCAGCTCTCTGGAGGACAGAAATTGGCGGTAGCCCTTGTCCTTATCTTTGCAATTAAGAAGTGCGACCCT---CCATTCCACCTCTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAAATGGTGTCTGgtacaaattgtcagctagaaaagacaaaaaccatccacatataaggccca Alignment from Exonerate_coding2genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG tcatgtacctttttactttaaaaacacactttccttcattatcaatacagCTGTCATTTATGGGAAAACATGGTGAGATGAGAGATATGCAGCAGCAGCTCTCTGGAGGACAGAAATTGGCGGTAGCCCTTGTCCTTATCTTTGCAATTAAGAAGTGCGACCCT---CCATTCCACCTCTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAAATGGTGTCTGgtacaaattgtcagctagaaaagacaaaaaccatccacatataaggccca Alignment from GeneWise GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAG---CTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG tcatgtacctttttactttaaaaacacactttccttcattatcaatacagCTGTCATTTATGGGAAAACATGGTGAGATGAGAGATATGCAGCAGCAGCTCTCTGGAGGACAGAAATTGGCGGTAGCCCTTGTCCTTATCTTTGCAATTAAGAAGTGCGACCCT---CCATTCCACCTCTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAAATGGTGTCTGgtacaaattgtcagctagaaaagacaaaaaccatccacatataaggccca #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ccaggacccaattttttattattccatactttgtttcattccttacctagGTGGTTGAGAAGTATTCAAAGAGGGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGCAAAAAGGTGGAACTTGATGAATACAGGGAAAACATTTTACAAgtgagtgatatttatagactggtggactaatggtcgcaataacccctccc #### Smc5_ID5117_16 --> 1 - 0 Original Alignment tATAAGGCTGATGGAACAGGATACTTGCAATCTGGAAGAGGAAGAACGAAAAGCAAGTACCAAAATAAAAGAAATAAATGTTCAGAAAGCAAAACTTGTTACTGAATTAACAGGCCTTGTAAAG tgtaatttacaacagtacgtttttgactatggcttctttctcttcctcagtATCAGACTGATGGAACAGGATACTTGCAACCTGGAAGAGGAAGAGCGAAAGGCAAGTACCAAAATAAGAGAAATAAATGTTCAGAGAGCGAAACTTATTACTGAATTAACAGGACTTGTAAAAgtaagttattgtctattatctataatccaaatatccccttccacattata Alignment from CESAR tATAAGGCTGATGGAACAGGATACTTGCAATCTGGAAGAGGAAGAACGAAAAGCAAGTACCAAAATAAAAGAAATAAATGTTCAGAAAGCAAAACTTGTTACTGAATTAACAGGCCTTGTAAAG tgtaatttacaacagtacgtttttgactatggcttctttctcttcctcagtATCAGACTGATGGAACAGGATACTTGCAACCTGGAAGAGGAAGAGCGAAAGGCAAGTACCAAAATAAGAGAAATAAATGTTCAGAGAGCGAAACTTATTACTGAATTAACAGGACTTGTAAAAgtaagttattgtctattatctataatccaaatatccccttccacattata Alignment from Spaln_aa2Genome TATAAGGCTGATGGAACAGGATACTTGCAATCTGGAAGAGGAAGAACGAAAAGCAAGTACCAAAATAAAAGAAATAAATGTTCAGAAAGCAAAACTTGTTACTGAATTAACAGGCCTTGTAAAG tgtaatttacaacagtacgtttttgactatggcttctttctcttcctcagTATCAGACTGATGGAACAGGATACTTGCAACCTGGAAGAGGAAGAGCGAAAGGCAAGTACCAAAATAAGAGAAATAAATGTTCAGAGAGCGAAACTTATTACTGAATTAACAGGACTTGTAAAAgtaagttattgtctattatctataatccaaatatccccttccacattata Alignment from Spaln_nt2Genome TATAAGGCTGATGGAACAGGATACTTGCAATCTGGAAGAGGAAGAACGAAAAGCAAGTACCAAAATAAAAGAAATAAATGTTCAGAAAGCAAAACTTGTTACTGAATTAACAGGCCTTGTAAAG tgtaatttacaacagtacgtttttgactatggcttctttctcttcctcagTATCAGACTGATGGAACAGGATACTTGCAACCTGGAAGAGGAAGAGCGAAAGGCAAGTACCAAAATAAGAGAAATAAATGTTCAGAGAGCGAAACTTATTACTGAATTAACAGGACTTGTAAAAgtaagttattgtctattatctataatccaaatatccccttccacattata Alignment from Pairagon TATAAGGCTGATGGAACAGGATACTTGCAATCTGGAAGAGGAAGAACGAAAAGCAAGTACCAAAATAAAAGAAATAAATGTTCAGAAAGCAAAACTTGTTACTGAATTAACAGGCCTTGTAAAG tgtaatttacaacagtacgtttttgactatggcttctttctcttcctcagTATCAGACTGATGGAACAGGATACTTGCAACCTGGAAGAGGAAGAGCGAAAGGCAAGTACCAAAATAAGAGAAATAAATGTTCAGAGAGCGAAACTTATTACTGAATTAACAGGACTTGTAAAAgtaagttattgtctattatctataatccaaatatccccttccacattata Alignment from Exonerate_protein2genome TATAAGGCTGATGGAACAGGATACTTGCAATCTGGAAGAGGAAGAACGAAAAGCAAGTACCAAAATAAAAGAAATAAATGTTCAGAAAGCAAAACTTGTTACTGAATTAACAGGCCTTGTAAAG tgtaatttacaacagtacgtttttgactatggcttctttctcttcctcagTATCAGACTGATGGAACAGGATACTTGCAACCTGGAAGAGGAAGAGCGAAAGGCAAGTACCAAAATAAGAGAAATAAATGTTCAGAGAGCGAAACTTATTACTGAATTAACAGGACTTGTAAAAgtaagttattgtctattatctataatccaaatatccccttccacattata Alignment from Exonerate_coding2genome TATAAGGCTGATGGAACAGGATACTTGCAATCTGGAAGAGGAAGAACGAAAAGCAAGTACCAAAATAAAAGAAATAAATGTTCAGAAAGCAAAACTTGTTACTGAATTAACAGGCCTTGTAAAG tgtaatttacaacagtacgtttttgactatggcttctttctcttcctcagTATCAGACTGATGGAACAGGATACTTGCAACCTGGAAGAGGAAGAGCGAAAGGCAAGTACCAAAATAAGAGAAATAAATGTTCAGAGAGCGAAACTTATTACTGAATTAACAGGACTTGTAAAAgtaagttattgtctattatctataatccaaatatccccttccacattata Alignment from GeneWise TATAAGGCTGATGGAACAGGATACTTGCAATCTGGAAGAGGAAGAACGAAAAGCAAGTACCAAAATAAAAGAAATAAATGTTCAGAAAGCAAAACTTGTTACTGAATTAACAGGCCTTGTAAAG tgtaatttacaacagtacgtttttgactatggcttctttctcttcctcagTATCAGACTGATGGAACAGGATACTTGCAACCTGGAAGAGGAAGAGCGAAAGGCAAGTACCAAAATAAGAGAAATAAATGTTCAGAGAGCGAAACTTATTACTGAATTAACAGGACTTGTAAAAgtaagttattgtctattatctataatccaaatatccccttccacattata #### Smc5_ID5120_13 --> 1 - 0 Original Alignment aCAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gtgcaggagcatttgtagtgtttcataataagggtttctatgtgtttcagaCCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaagttggtacacttcagcaact Alignment from CESAR aCAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gtgcaggagcatttgtagtgtttcataataagggtttctatgtgtttcagaCCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaagttggtacacttcagcaact Alignment from Spaln_aa2Genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gtgcaggagcatttgtagtgtttcataataagggtttctatgtgtttcagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaagttggtacacttcagcaact Alignment from Spaln_nt2Genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gtgcaggagcatttgtagtgtttcataataagggtttctatgtgtttcagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaagttggtacacttcagcaact Alignment from Pairagon ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gtgcaggagcatttgtagtgtttcataataagggtttctatgtgtttcagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaagttggtacacttcagcaact Alignment from Exonerate_protein2genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gtgcaggagcatttgtagtgtttcataataagggtttctatgtgtttcagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaagttggtacacttcagcaact Alignment from Exonerate_coding2genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gtgcaggagcatttgtagtgtttcataataagggtttctatgtgtttcagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaagttggtacacttcagcaact Alignment from GeneWise ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gtgcaggagcatttgtagtgtttcataataagggtttctatgtgtttcagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaagttggtacacttcagcaact #### Smc5_ID5122_11 --> 0 - 0 Original Alignment ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtaccctttaaggaaaatagtcactgtaattatacttacttatagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaacgaccaactatgtccatcatcaaatgattgaccacctcccccccct Alignment from CESAR ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtaccctttaaggaaaatagtcactgtaattatacttacttatagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaacgaccaactatgtccatcatcaaatgattgaccacctcccccccct Alignment from Spaln_aa2Genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtaccctttaaggaaaatagtcactgtaattatacttacttatagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaacgaccaactatgtccatcatcaaatgattgaccacctcccccccct Alignment from Spaln_nt2Genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtaccctttaaggaaaatagtcactgtaattatacttacttatagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaacgaccaactatgtccatcatcaaatgattgaccacctcccccccct Alignment from Pairagon ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtaccctttaaggaaaatagtcactgtaattatacttacttatagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaacgaccaactatgtccatcatcaaatgattgaccacctcccccccct Alignment from Exonerate_protein2genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtaccctttaaggaaaatagtcactgtaattatacttacttatagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaacgaccaactatgtccatcatcaaatgattgaccacctcccccccct Alignment from Exonerate_coding2genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtaccctttaaggaaaatagtcactgtaattatacttacttatagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaacgaccaactatgtccatcatcaaatgattgaccacctcccccccct Alignment from GeneWise ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtaccctttaaggaaaatagtcactgtaattatacttacttatagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaacgaccaactatgtccatcatcaaatgattgaccacctcccccccct #### Smc5_ID5130_4 --> 1 - 0 Original Alignment gTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttatttttgtttaggacagaaccaggaggctgccattgccctgtatctagaTTCAGGACTTCAGGAAATCTGATGATAACCCGTGAGATTGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTCGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggcgcttgaccagtgaacatagggcataccatgttactgcataccgt Alignment from CESAR gTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttatttttgtttaggacagaaccaggaggctgccattgccctgtatctagaTTCAGGACTTCAGGAAATCTGATGATAACCCGTGAGATTGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTCGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggcgcttgaccagtgaacatagggcataccatgttactgcataccgt Alignment from Spaln_aa2Genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttatttttgtttaggacagaaccaggaggctgccattgccctgtatctagATTCAGGACTTCAGGAAATCTGATGATAACCCGTGAGATTGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTCGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggcgcttgaccagtgaacatagggcataccatgttactgcataccgt Alignment from Spaln_nt2Genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttatttttgtttaggacagaaccaggaggctgccattgccctgtatctagATTCAGGACTTCAGGAAATCTGATGATAACCCGTGAGATTGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTCGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggcgcttgaccagtgaacatagggcataccatgttactgcataccgt Alignment from Pairagon GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttatttttgtttaggacagaaccaggaggctgccattgccctgtatctagATTCAGGACTTCAGGAAATCTGATGATAACCCGTGAGATTGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTCGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggcgcttgaccagtgaacatagggcataccatgttactgcataccgt Alignment from Exonerate_protein2genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttatttttgtttaggacagaaccaggaggctgccattgccctgtatctagATTCAGGACTTCAGGAAATCTGATGATAACCCGTGAGATTGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTCGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggcgcttgaccagtgaacatagggcataccatgttactgcataccgt Alignment from Exonerate_coding2genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttatttttgtttaggacagaaccaggaggctgccattgccctgtatctagATTCAGGACTTCAGGAAATCTGATGATAACCCGTGAGATTGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTCGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggcgcttgaccagtgaacatagggcataccatgttactgcataccgt Alignment from GeneWise GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttatttttgtttaggacagaaccaggaggctgccattgccctgtatctagATTCAGGACTTCAGGAAATCTGATGATAACCCGTGAGATTGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTCGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggcgcttgaccagtgaacatagggcataccatgttactgcataccgt #### Smndc1_ID11280_2 --> 0 - 2 Original Alignment GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGAca gctttgtctgctttgtctgctttgtcttgaaaccttctcttgttttttagGAAGTGATACAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAAACACTTGCAAGTTCTGACAAGTTAGCCCCTACCCAACCTACCCACTCATGGAATGTTGCAGACGAGTGTATGGCTATATGGAGTGATGATGGAcagtgagtctgtgatgtgtactaaatctggtatgataagctgagtggatgta Alignment from CESAR GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGAca gctttgtctgctttgtctgctttgtcttgaaaccttctcttgttttttagGAAGTGATACAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAAACACTTGCAAGTTCTGACAAGTTAGCCCCTACCCAACCTACCCACTCATGGAATGTTGCAGACGAGTGTATGGCTATATGGAGTGATGATGGAcagtgagtctgtgatgtgtactaaatctggtatgataagctgagtggatgta Alignment from Spaln_aa2Genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA gctttgtctgctttgtctgctttgtcttgaaaccttctcttgttttttagGAAGTGATACAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAAACACTTGCAAGTTCTGACAAGTTAGCCCCTACCCAACCTACCCACTCATGGAATGTTGCAGACGAGTGTATGGCTATATGGAGTGATGATGGACAgtgagtctgtgatgtgtactaaatctggtatgataagctgagtggatgta Alignment from Spaln_nt2Genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA gctttgtctgctttgtctgctttgtcttgaaaccttctcttgttttttagGAAGTGATACAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAAACACTTGCAAGTTCTGACAAGTTAGCCCCTACCCAACCTACCCACTCATGGAATGTTGCAGACGAGTGTATGGCTATATGGAGTGATGATGGACAgtgagtctgtgatgtgtactaaatctggtatgataagctgagtggatgta Alignment from Pairagon GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA gctttgtctgctttgtctgctttgtcttgaaaccttctcttgttttttagGAAGTGATACAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAAACACTTGCAAGTTCTGACAAGTTAGCCCCTACCCAACCTACCCACTCATGGAATGTTGCAGACGAGTGTATGGCTATATGGAGTGATGATGGACAgtgagtctgtgatgtgtactaaatctggtatgataagctgagtggatgta Alignment from Exonerate_protein2genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA gctttgtctgctttgtctgctttgtcttgaaaccttctcttgttttttagGAAGTGATACAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAAACACTTGCAAGTTCTGACAAGTTAGCCCCTACCCAACCTACCCACTCATGGAATGTTGCAGACGAGTGTATGGCTATATGGAGTGATGATGGACAgtgagtctgtgatgtgtactaaatctggtatgataagctgagtggatgta Alignment from Exonerate_coding2genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA gctttgtctgctttgtctgctttgtcttgaaaccttctcttgttttttagGAAGTGATACAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAAACACTTGCAAGTTCTGACAAGTTAGCCCCTACCCAACCTACCCACTCATGGAATGTTGCAGACGAGTGTATGGCTATATGGAGTGATGATGGACAgtgagtctgtgatgtgtactaaatctggtatgataagctgagtggatgta Alignment from GeneWise GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA gctttgtctgctttgtctgctttgtcttgaaaccttctcttgttttttagGAAGTGATACAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAAACACTTGCAAGTTCTGACAAGTTAGCCCCTACCCAACCTACCCACTCATGGAATGTTGCAGACGAGTGTATGGCTATATGGAGTGATGATGGACAgtgagtctgtgatgtgtactaaatctggtatgataagctgagtggatgta #### Snx15_ID1466_6 --> 2 - 1 Original Alignment tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atatcttcatcacctggataagtcttggttttctttttttaaatcttcagtaGACCCCCTACCATCTGGTCCAGCTCATGAGGCTCTCGAATATCTCTTCAGCTGTGACAGTACAGAGGAGGCCTCTGGAACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTAACACTTTTTGACCCTTACTCAAAAGTGagtaggattggatggaggggcagacattaatgtgctacaggactctattag Alignment from CESAR tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atatcttcatcacctggataagtcttggttttctttttttaaatcttcagtaGACCCCCTACCATCTGGTCCAGCTCATGAGGCTCTCGAATATCTCTTCAGCTGTGACAGTACAGAGGAGGCCTCTGGAACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTAACACTTTTTGACCCTTACTCAAAAGTGagtaggattggatggaggggcagacattaatgtgctacaggactctattag Alignment from Spaln_aa2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atatcttcatcacctggataagtcttggttttctttttttaaatcttcagTAGACCCCCTACCATCTGGTCCAGCTCATGAGGCTCTCGAATATCTCTTCAGCTGTGACAGTACAGAGGAGGCCTCTGGAACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTAACACTTTTTGACCCTTACTCAAAAGTGAgtaggattggatggaggggcagacattaatgtgctacaggactctattag Alignment from Spaln_nt2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atatcttcatcacctggataagtcttggttttctttttttaaatcttcagTAGACCCCCTACCATCTGGTCCAGCTCATGAGGCTCTCGAATATCTCTTCAGCTGTGACAGTACAGAGGAGGCCTCTGGAACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTAACACTTTTTGACCCTTACTCAAAAGTGAgtaggattggatggaggggcagacattaatgtgctacaggactctattag Alignment from Pairagon TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atatcttcatcacctggataagtcttggttttctttttttaaatcttcagTAGACCCCCTACCATCTGGTCCAGCTCATGAGGCTCTCGAATATCTCTTCAGCTGTGACAGTACAGAGGAGGCCTCTGGAACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTAACACTTTTTGACCCTTACTCAAAAGTGAgtaggattggatggaggggcagacattaatgtgctacaggactctattag Alignment from Exonerate_protein2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atatcttcatcacctggataagtcttggttttctttttttaaatcttcagTAGACCCCCTACCATCTGGTCCAGCTCATGAGGCTCTCGAATATCTCTTCAGCTGTGACAGTACAGAGGAGGCCTCTGGAACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTAACACTTTTTGACCCTTACTCAAAAGTGAgtaggattggatggaggggcagacattaatgtgctacaggactctattag Alignment from Exonerate_coding2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atatcttcatcacctggataagtcttggttttctttttttaaatcttcagTAGACCCCCTACCATCTGGTCCAGCTCATGAGGCTCTCGAATATCTCTTCAGCTGTGACAGTACAGAGGAGGCCTCTGGAACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTAACACTTTTTGACCCTTACTCAAAAGTGAgtaggattggatggaggggcagacattaatgtgctacaggactctattag Alignment from GeneWise TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atatcttcatcacctggataagtcttggttttctttttttaaatcttcagTAGACCCCCTACCATCTGGTCCAGCTCATGAGGCTCTCGAATATCTCTTCAGCTGTGACAGTACAGAGGAGGCCTCTGGAACTCTGGCTCGAGGTCCCCTCTCTGAGGCTGATCTAACACTTTTTGACCCTTACTCAAAAGTGAgtaggattggatggaggggcagacattaatgtgctacaggactctattag #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg tgatggtcagccatgttactctgccctctcaatgttccttgatgttttagGGTGGGGAGATAACACACCCCTTTGAGGTGTGTAGAGATCTGCGGATTCCACTCCCTCCTCTTATTCCAACAATGTCTCCAGTTGAAGCTCGTTTATTCCAGGCTTTGCTGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAGGTACCAggtaaccctttacatgaaacggaagcatggcactgggcgtagtacctgact Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg tgatggtcagccatgttactctgccctctcaatgttccttgatgttttagGGTGGGGAGATAACACACCCCTTTGAGGTGTGTAGAGATCTGCGGATTCCACTCCCTCCTCTTATTCCAACAATGTCTCCAGTTGAAGCTCGTTTATTCCAGGCTTTGCTGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAGGTACCAggtaaccctttacatgaaacggaagcatggcactgggcgtagtacctgact Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tgatggtcagccatgttactctgccctctcaatgttccttgatgttttagGGTGGGGAGATAACACACCCCTTTGAGGTGTGTAGAGATCTGCGGATTCCACTCCCTCCTCTTATTCCAACAATGTCTCCAGTTGAAGCTCGTTTATTCCAGGCTTTGCTGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAGGTACCAGgtaaccctttacatgaaacggaagcatggcactgggcgtagtacctgact Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tgatggtcagccatgttactctgccctctcaatgttccttgatgttttagGGTGGGGAGATAACACACCCCTTTGAGGTGTGTAGAGATCTGCGGATTCCACTCCCTCCTCTTATTCCAACAATGTCTCCAGTTGAAGCTCGTTTATTCCAGGCTTTGCTGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAGGTACCAGgtaaccctttacatgaaacggaagcatggcactgggcgtagtacctgact Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tgatggtcagccatgttactctgccctctcaatgttccttgatgttttagGGTGGGGAGATAACACACCCCTTTGAGGTGTGTAGAGATCTGCGGATTCCACTCCCTCCTCTTATTCCAACAATGTCTCCAGTTGAAGCTCGTTTATTCCAGGCTTTGCTGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAGGTACCAGgtaaccctttacatgaaacggaagcatggcactgggcgtagtacctgact Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tgatggtcagccatgttactctgccctctcaatgttccttgatgttttagGGTGGGGAGATAACACACCCCTTTGAGGTGTGTAGAGATCTGCGGATTCCACTCCCTCCTCTTATTCCAACAATGTCTCCAGTTGAAGCTCGTTTATTCCAGGCTTTGCTGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAGGTACCAGgtaaccctttacatgaaacggaagcatggcactgggcgtagtacctgact Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tgatggtcagccatgttactctgccctctcaatgttccttgatgttttagGGTGGGGAGATAACACACCCCTTTGAGGTGTGTAGAGATCTGCGGATTCCACTCCCTCCTCTTATTCCAACAATGTCTCCAGTTGAAGCTCGTTTATTCCAGGCTTTGCTGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAGGTACCAGgtaaccctttacatgaaacggaagcatggcactgggcgtagtacctgact Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tgatggtcagccatgttactctgccctctcaatgttccttgatgttttagGGTGGGGAGATAACACACCCCTTTGAGGTGTGTAGAGATCTGCGGATTCCACTCCCTCCTCTTATTCCAACAATGTCTCCAGTTGAAGCTCGTTTATTCCAGGCTTTGCTGGCTGAAAGAAGGGGCCAGGAGGAGCTGGAGGTACCAGgtaaccctttacatgaaacggaagcatggcactgggcgtagtacctgact #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg agtgtacccagcccttgctagggtctgctttgtctatcttttgttcacagGTAGTAGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCAGCATTCCCACAAGCCCAGGTGTTTggtgaggtttagacaacatctccaggtgatgacatctagtatctctaaatg Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg agtgtacccagcccttgctagggtctgctttgtctatcttttgttcacagGTAGTAGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCAGCATTCCCACAAGCCCAGGTGTTTggtgaggtttagacaacatctccaggtgatgacatctagtatctctaaatg Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG agtgtacccagcccttgctagggtctgctttgtctatcttttgttcacagGTAGTAGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCAGCATTCCCACAAGCCCAGGTGTTTGgtgaggtttagacaacatctccaggtgatgacatctagtatctctaaatg Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG agtgtacccagcccttgctagggtctgctttgtctatcttttgttcacagGTAGTAGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCAGCATTCCCACAAGCCCAGGTGTTTGgtgaggtttagacaacatctccaggtgatgacatctagtatctctaaatg Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG agtgtacccagcccttgctagggtctgctttgtctatcttttgttcacagGTAGTAGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCAGCATTCCCACAAGCCCAGGTGTTTGgtgaggtttagacaacatctccaggtgatgacatctagtatctctaaatg Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG agtgtacccagcccttgctagggtctgctttgtctatcttttgttcacagGTAGTAGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCAGCATTCCCACAAGCCCAGGTGTTTGgtgaggtttagacaacatctccaggtgatgacatctagtatctctaaatg Alignment from Exonerate_coding2genome GTAACCGCTCAGTTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG agTGTACCCAGCCCTTGCTAGGGTCTGCTTTGTCTATCTTTTGTTCACAGGTAGTAGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCAGCATTCCCACAAGCCCAGGTGTTTGgtgaggtttagacaacatctccaggtgatgacatctagtatctctaaatg Alignment from GeneWise ---TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG agtgtacccagCCCTTGCTAGGGTCTGCTTTGTCTATCTTTTGTTCACAGGTAGTAGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCAGCATTCCCACAAGCCCAGGTGTTTGgtgaggtttagacaacatctccaggtgatgacatctagtatctctaaatg #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCAAAGAGCAGACCGCATTATACACTCCCACAAAcgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCAAAGAGCAGACCGCATTATACACTCCCACAAAcgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCAAAGAGCAGACCGCATTATACACTCCCACAAACgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCAAAGAGCAGACCGCATTATACACTCCCACAAACgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCAAAGAGCAGACCGCATTATACACTCCCACAAACgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCAAAGAGCAGACCGCATTATACACTCCCACAAACgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from Exonerate_coding2genome ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcaggagctagatgattttttcgaacatgaaagacctttcctagttcaatataaaacccggatttgtgacagctgccaaagagcagaccgcattatacactcccacaaacgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT ccaggtttaccgccctccttaatcccggcattctccttcattcatcgcagGAGCTAGATGATTTTTTCGAACATGAAAGACCTTTCCTAGTTCAATATAAAACCCGGATTTGTGACAGCTGCCAAAGAGCAGACCGCATTATACACTCCCACAAACgtaatctatctttaggctagaacattgaatgtgcacatagcttgaattgc #### Sorbs1_ID7903_19 --> 0 - 2 Original Alignment ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGaa aatcaggctatctttaagagtcttagcttttcccattcctttgacttaagATGAGGCCTGCTCAAGCCAAGTTTGATTCTAAAGCTCAGACACTGaagtggggttcttggagcaatcattgatcagggcaattgggtgaacaagggt Alignment from CESAR ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGaa aatcaggctatctttaagagtcttagcttttcccattcctttgacttaagATGAGGCCTGCTCAAGCCAAGTTTGATTCTAAAGCTCAGACACTGaagtggggttcttggagcaatcattgatcagggcaattgggtgaacaagggt Alignment from Spaln_aa2Genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA aatcaggctatctttaagagtcttagcttttcccattcctttgacttaagATGAGGCCTGCTCAAGCCAAGTTTGATTCTAAAGCTCAGACACTGAAgtggggttcttggagcaatcattgatcagggcaattgggtgaacaagggt Alignment from Spaln_nt2Genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA aatcaggctatctttaagagtcttagcttttcccattcctttgacttaagATGAGGCCTGCTCAAGCCAAGTTTGATTCTAAAGCTCAGACACTGAAgtggggttcttggagcaatcattgatcagggcaattgggtgaacaagggt Alignment from Pairagon ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA aatcaggctatctttaagagtcttagcttttcccattcctttgacttaagATGAGGCCTGCTCAAGCCAAGTTTGATTCTAAAGCTCAGACACTGAAgtggggttcttggagcaatcattgatcagggcaattgggtgaacaagggt Alignment from Exonerate_protein2genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA aatcaggctatctttaagagtcttagcttttcccattcctttgacttaagATGAGGCCTGCTCAAGCCAAGTTTGATTCTAAAGCTCAGACACTGAAgtggggttcttggagcaatcattgatcagggcaattgggtgaacaagggt Alignment from Exonerate_coding2genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA aatcaggctatctttaagagtcttagcttttcccattcctttgacttaagATGAGGCCTGCTCAAGCCAAGTTTGATTCTAAAGCTCAGACACTGAAgtggggttcttggagcaatcattgatcagggcaattgggtgaacaagggt Alignment from GeneWise ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA aatcaggctatctttaagagtcttagcttttcccattcctttgacttaagATGAGGCCTGCTCAAGCCAAGTTTGATTCTAAAGCTCAGACACTGAAgtggggttcttggagcaatcattgatcagggcaattgggtgaacaagggt #### Sorbs1_ID7905_18 --> 0 - 0 Original Alignment AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ccattaaagcaaaactggttcactgtaatgttttcccttttctgacgtagGAACTCTTAGTGGACCAGACACTGATTAAGCATGAACAGGAAGAGACTGATATTGCAGCTCGGCAGCATGTGGGTGTTATACAGACTCATCACCTTTTCATCATTAACAGGCGATTTGGGGACCTCCTTAATATAGATGATACAGCAAAGAGGAAATCTGGGCTGCAAgtatggtcagataattagggactatggcctcctgtgccactgtctccctt Alignment from CESAR AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ccattaaagcaaaactggttcactgtaatgttttcccttttctgacgtagGAACTCTTAGTGGACCAGACACTGATTAAGCATGAACAGGAAGAGACTGATATTGCAGCTCGGCAGCATGTGGGTGTTATACAGACTCATCACCTTTTCATCATTAACAGGCGATTTGGGGACCTCCTTAATATAGATGATACAGCAAAGAGGAAATCTGGGCTGCAAgtatggtcagataattagggactatggcctcctgtgccactgtctccctt Alignment from Spaln_aa2Genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ccattaaagcaaaactggttcactgtaatgttttcccttttctgacgtagGAACTCTTAGTGGACCAGACACTGATTAAGCATGAACAGGAAGAGACTGATATTGCAGCTCGGCAGCATGTGGGTGTTATACAGACTCATCACCTTTTCATCATTAACAGGCGATTTGGGGACCTCCTTAATATAGATGATACAGCAAAGAGGAAATCTGGGCTGCAAgtatggtcagataattagggactatggcctcctgtgccactgtctccctt Alignment from Spaln_nt2Genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ccattaaagcaaaactggttcactgtaatgttttcccttttctgacgtagGAACTCTTAGTGGACCAGACACTGATTAAGCATGAACAGGAAGAGACTGATATTGCAGCTCGGCAGCATGTGGGTGTTATACAGACTCATCACCTTTTCATCATTAACAGGCGATTTGGGGACCTCCTTAATATAGATGATACAGCAAAGAGGAAATCTGGGCTGCAAgtatggtcagataattagggactatggcctcctgtgccactgtctccctt Alignment from Pairagon AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTT ccattaaagcaaaactggttcactgtaatgttttcccttttctgacgtagGAACTCTTAGTGGACCAGACACTGATTAAGCATGAACAGGAAGAGACTGATATTGCAGCTCGGCAGCATGTGGGTGTTATACAGACTCATCACCTTTTCATCATTAACAGGCGATTTGGGGACCTCCTTAATATAGATGATACAGCAAAGAGGAAATCTGGGCTgcaagtatggtcagataattagggactatggcctcctgtgccactgtctccctt Alignment from Exonerate_protein2genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ccattaaagcaaaactggttcactgtaatgttttcccttttctgacgtagGAACTCTTAGTGGACCAGACACTGATTAAGCATGAACAGGAAGAGACTGATATTGCAGCTCGGCAGCATGTGGGTGTTATACAGACTCATCACCTTTTCATCATTAACAGGCGATTTGGGGACCTCCTTAATATAGATGATACAGCAAAGAGGAAATCTGGGCTGCAAgtatggtcagataattagggactatggcctcctgtgccactgtctccctt Alignment from Exonerate_coding2genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ccattaaagcaaaactggttcactgtaatgttttcccttttctgacgtagGAACTCTTAGTGGACCAGACACTGATTAAGCATGAACAGGAAGAGACTGATATTGCAGCTCGGCAGCATGTGGGTGTTATACAGACTCATCACCTTTTCATCATTAACAGGCGATTTGGGGACCTCCTTAATATAGATGATACAGCAAAGAGGAAATCTGGGCTGCAAgtatggtcagataattagggactatggcctcctgtgccactgtctccctt Alignment from GeneWise AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ccattaaagcaaaactggttcactgtaatgttttcccttttctgacgtagGAACTCTTAGTGGACCAGACACTGATTAAGCATGAACAGGAAGAGACTGATATTGCAGCTCGGCAGCATGTGGGTGTTATACAGACTCATCACCTTTTCATCATTAACAGGCGATTTGGGGACCTCCTTAATATAGATGATACAGCAAAGAGGAAATCTGGGCTGCAAgtatggtcagataattagggactatggcctcctgtgccactgtctccctt #### Sorbs1_ID7917_10 --> 2 - 2 Original Alignment caAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAag ttagggctgctgacatcaggccaatagttatttaatttggggtcttctagctAAATCTCCCCTTTCTGTGCCACACTTGCAAAGTGACATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCTGCCACACTACCTCTCCCAGCCCGCTCTTCTTCACTTAAGTCCAGCCCTGAGcggtacagcatagcagtgatgtattggcccacagtctctaatcttggtgctg Alignment from CESAR caAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAag ttagggctgctgacatcaggccaatagttatttaatttggggtcttctagctAAATCTCCCCTTTCTGTGCCACACTTGCAAAGTGACATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCTGCCACACTACCTCTCCCAGCCCGCTCTTCTTCACTTAAGTCCAGCCCTGAGcggtacagcatagcagtgatgtattggcccacagtctctaatcttggtgctg Alignment from Spaln_aa2Genome CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ttagggctgctgacatcaggccaatagttatttaatttggggtcttctagCTAAATCTCCCCTTTCTGTGCCACACTTGCAAAGTGACATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCTGCCACACTACCTCTCCCAGCCCGCTCTTCTTCACTTAAGTCCAGCCCTGAGCGgtacagcatagcagtgatgtattggcccacagtctctaatcttggtgctg Alignment from Spaln_nt2Genome CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ttagggctgctgacatcaggccaatagttatttaatttggggtcttctagCTAAATCTCCCCTTTCTGTGCCACACTTGCAAAGTGACATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCTGCCACACTACCTCTCCCAGCCCGCTCTTCTTCACTTAAGTCCAGCCCTGAGCGgtacagcatagcagtgatgtattggcccacagtctctaatcttggtgctg Alignment from Pairagon CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ttagggctgctgacatcaggccaatagttatttaatttggggtcttctagCTAAATCTCCCCTTTCTGTGCCACACTTGCAAAGTGACATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCTGCCACACTACCTCTCCCAGCCCGCTCTTCTTCACTTAAGTCCAGCCCTGAGCGgtacagcatagcagtgatgtattggcccacagtctctaatcttggtgctg Alignment from Exonerate_protein2genome CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ttagggctgctgacatcaggccaatagttatttaatttggggtcttctagCTAAATCTCCCCTTTCTGTGCCACACTTGCAAAGTGACATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCTGCCACACTACCTCTCCCAGCCCGCTCTTCTTCACTTAAGTCCAGCCCTGAGCGgtacagcatagcagtgatgtattggcccacagtctctaatcttggtgctg Alignment from Exonerate_coding2genome CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ttagggctgctgacatcaggccaatagttatttaatttggggtcttctagCTAAATCTCCCCTTTCTGTGCCACACTTGCAAAGTGACATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCTGCCACACTACCTCTCCCAGCCCGCTCTTCTTCACTTAAGTCCAGCCCTGAGCGgtacagcatagcagtgatgtattggcccacagtctctaatcttggtgctg Alignment from GeneWise CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ttagggctgctgacatcaggccaatagttatttaatttggggtcttctagCTAAATCTCCCCTTTCTGTGCCACACTTGCAAAGTGACATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCTGCCACACTACCTCTCCCAGCCCGCTCTTCTTCACTTAAGTCCAGCCCTGAGCGgtacagcatagcagtgatgtattggcccacagtctctaatcttggtgctg #### Sorbs1_ID7921_8 --> 0 - 1 Original Alignment AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAg ttacaggatgtaagacaagccaattagagcacgctccttttccctaccagAATACTGAGCGATTGAAAGACTGGTATAAAACTATGTTCAAACAGATCCATAAATTGAATAGGggtgcacatgatgtatgagctttttgacttatcatttagatcttataacct Alignment from CESAR AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAg ttacaggatgtaagacaagccaattagagcacgctccttttccctaccagAATACTGAGCGATTGAAAGACTGGTATAAAACTATGTTCAAACAGATCCATAAATTGAATAGGggtgcacatgatgtatgagctttttgacttatcatttagatcttataacct Alignment from Spaln_aa2Genome AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG ttacaggatgtaagacaagccaattagagcacgctccttttccctaccagAATACTGAGCGATTGAAAGACTGGTATAAAACTATGTTCAAACAGATCCATAAATTGAATAGGGgtgcacatgatgtatgagctttttgacttatcatttagatcttataacct Alignment from Spaln_nt2Genome AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG ttacaggatgtaagacaagccaattagagcacgctccttttccctaccagAATACTGAGCGATTGAAAGACTGGTATAAAACTATGTTCAAACAGATCCATAAATTGAATAGGGgtgcacatgatgtatgagctttttgacttatcatttagatcttataacct Alignment from Pairagon AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG ttacaggatgtaagacaagccaattagagcacgctccttttccctaccagAATACTGAGCGATTGAAAGACTGGTATAAAACTATGTTCAAACAGATCCATAAATTGAATAGGGgtgcacatgatgtatgagctttttgacttatcatttagatcttataacct Alignment from Exonerate_protein2genome AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG ttacaggatgtaagacaagccaattagagcacgctccttttccctaccagAATACTGAGCGATTGAAAGACTGGTATAAAACTATGTTCAAACAGATCCATAAATTGAATAGGGgtgcacatgatgtatgagctttttgacttatcatttagatcttataacct Alignment from Exonerate_coding2genome AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG ttacaggatgtaagacaagccaattagagcacgctccttttccctaccagAATACTGAGCGATTGAAAGACTGGTATAAAACTATGTTCAAACAGATCCATAAATTGAATAGGGgtgcacatgatgtatgagctttttgacttatcatttagatcttataacct Alignment from GeneWise AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG ttacaggatgtaagacaagccaattagagcacgctccttttccctaccagAATACTGAGCGATTGAAAGACTGGTATAAAACTATGTTCAAACAGATCCATAAATTGAATAGGGgtgcacatgatgtatgagctttttgacttatcatttagatcttataacct #### Sorbs1_ID7924_6 --> 0 - 1 Original Alignment GGC---AGTCCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAg atatgtatggtcataattgatcaaccaatatcttgttgctttgcctctagGGCAGTCGACTTATACTCAATGAAGTCTCTTCCTCCCATATTGAGACTGACTCACAGGACTTCCCCCCAGCAAGCAGGCCTTGCTCCGCATACCCT---ACTGCCATTGTCAACCCTAGTATAGTGCTCTTGTGGCACAATGAAggtaagcggctttgtgcccaaagacttacattttctagcagattggattta Alignment from CESAR GGCAGT---CCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAg atatgtatggtcataattgatcaaccaatatcttgttgctttgcctctagGGCAGTCGACTTATACTCAATGAAGTCTCTTCCTCCCATATTGAGACTGACTCACAGGACTTCCCCCCAGCAAGCAGGCCTTGCTCCGCATACCCT---ACTGCCATTGTCAACCCTAGTATAGTGCTCTTGTGGCACAATGAAggtaagcggctttgtgcccaaagacttacattttctagcagattggattta Alignment from Spaln_aa2Genome GGCAGTCCTTTA---CTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atatgtatggtcataattgatcaaccaatatcttgttgctttgcctctagGGCAGTCGACTTATACTCAATGAAGTCTCTTCCTCCCATATTGAGACTGACTCACAGGACTTCCCCCCAGCAAGCAGGCCTTGCTCCGCATACCCT---ACTGCCATTGTCAACCCTAGTATAGTGCTCTTGTGGCACAATGAAGgtaagcggctttgtgcccaaagacttacattttctagcagattggattta Alignment from Spaln_nt2Genome GGCAGTC--CTT-TACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atatgtatggtcataattgatcaaccaatatcttgttgctttgcctctagGGCAGTCGACTTATACTCAATGAAGTCTCTTCCTCCCATATTGAGACTGACTCACAGGACTTCCCCCCAGCAAGCAGGCCTTGCTCCGCATACC---CTACTGCCATTGTCAACCCTAGTATAGTGCTCTTGTGGCACAATGAAGgtaagcggctttgtgcccaaagacttacattttctagcagattggattta Alignment from Pairagon GGCAGT---CCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atatgtatggtcataattgatcaaccaatatcttgttgctttgcctctagGGCAGTCGACTTATACTCAATGAAGTCTCTTCCTCCCATATTGAGACTGACTCACAGGACTTCCCCCCAGCAAGCAGGCCTTGCTCCGCATACC---CTACTGCCATTGTCAACCCTAGTATAGTGCTCTTGTGGCACAATGAAGgtaagcggctttgtgcccaaagacttacattttctagcagattggattta Alignment from Exonerate_protein2genome GGCAGTCCTTTA---CTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atatgtatggtcataattgatcaaccaatatcttgttgctttgcctctagGGCAGTCGACTTATACTCAATGAAGTCTCTTCCTCCCATATTGAGACTGACTCACAGGACTTCCCCCCAGCAAGCAGGCCTTGCTCCGCATACCCT---ACTGCCATTGTCAACCCTAGTATAGTGCTCTTGTGGCACAATGAAGgtaagcggctttgtgcccaaagacttacattttctagcagattggattta Alignment from Exonerate_coding2genome atatgtatggtcataattgatcaaccaatatcttgttgctttgcctctagggcagtcgacttatactcaatgaagtctcttcctcccatattgagactgactcacaggacttccccccagcaagcaggccttgctccgcataccctactgccattgtcaaccctagtatagtgctcttgtggcacaatgaaggtaagcggctttgtgcccaaagacttacattttctagcagattggattta Alignment from GeneWise GGCAGTCCTTTA---CTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atatgtatggtcataattgatcaaccaatatcttgttgctttgcctctagGGCAGTCGACTTATACTCAATGAAGTCTCTTCCTCCCATATTGAGACTGACTCACAGGACTTCCCCCCAGCAAGCAGGCCTTGCTCCGCATACCCT---ACTGCCATTGTCAACCCTAGTATAGTGCTCTTGTGGCACAATGAAGgtaagcggctttgtgcccaaagacttacattttctagcagattggattta #### Sorcs3_ID10544_3 --> 1 - 0 Original Alignment gTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG gtccaccaccagtaggtccgtgaacttggtcataatcctctattttccaggTCAGTAGATCATGGTGCCTCCTATGAGAAACTC---AATAAAGTGGGTCTGAAGACAAATATCAGTTACCCTTATGTTAACCCAACCAATAAGTGGAGGgtatgtgaggcaaataagaacagatacaggctgcttactcactagcatga Alignment from CESAR gTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG gtccaccaccagtaggtccgtgaacttggtcataatcctctattttccaggTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTCTGAAGACAAATATCAGTTACCCTTATGTTAACCCAACCAATAAGTGGAGGgtatgtgaggcaaataagaacagatacaggctgcttactcactagcatga Alignment from Spaln_aa2Genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG gtccaccaccagtaggtccgtgaacttggtcataatcctctattttccagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTCTGAAGACAAATATCAGTTACCCTTATGTTAACCCAACCAATAAGTGGAGGgtatgtgaggcaaataagaacagatacaggctgcttactcactagcatga Alignment from Spaln_nt2Genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG gtccaccaccagtaggtccgtgaacttggtcataatcctctattttccagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTCTGAAGACAAATATCAGTTACCCTTATGTTAACCCAACCAATAAGTGGAGGgtatgtgaggcaaataagaacagatacaggctgcttactcactagcatga Alignment from Pairagon GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG gtccaccaccagtaggtccgtgaacttggtcataatcctctattttccagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTCTGAAGACAAATATCAGTTACCCTTATGTTAACCCAACCAATAAGTGGAGGgtatgtgaggcaaataagaacagatacaggctgcttactcactagcatga Alignment from Exonerate_protein2genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG gtccaccaccagtaggtccgtgaacttggtcataatcctctattttccagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTCTGAAGACAAATATCAGTTACCCTTATGTTAACCCAACCAATAAGTGGAGGgtatgtgaggcaaataagaacagatacaggctgcttactcactagcatga Alignment from Exonerate_coding2genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG gtccaccaccagtaggtccgtgaacttggtcataatcctctattttccagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTCTGAAGACAAATATCAGTTACCCTTATGTTAACCCAACCAATAAGTGGAGGgtatgtgaggcaaataagaacagatacaggctgcttactcactagcatga Alignment from GeneWise GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG gtccaccaccagtaggtccgtgaacttggtcataatcctctattttccagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTCTGAAGACAAATATCAGTTACCCTTATGTTAACCCAACCAATAAGTGGAGGgtatgtgaggcaaataagaacagatacaggctgcttactcactagcatga #### Sorcs3_ID10597_8 --> 0 - 0 Original Alignment GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG acaaggtctgagacctccatgattacaaagtgaaaactcttctctcacagGTCACAATCGGTGGACAAGCAACCTACTATGTGTCATATCAAAGGAAGGCATTTGCCCAGATCAAGTTACCCAAGTACTCCTTGCCAAAGgtactgttcaagagatgatctgatgacccattaaaagcccttacttagta Alignment from CESAR GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG acaaggtctgagacctccatgattacaaagtgaaaactcttctctcacagGTCACAATCGGTGGACAAGCAACCTACTATGTGTCATATCAAAGGAAGGCATTTGCCCAGATCAAGTTACCCAAGTACTCCTTGCCAAAGgtactgttcaagagatgatctgatgacccattaaaagcccttacttagta Alignment from Spaln_aa2Genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG acaaggtctgagacctccatgattacaaagtgaaaactcttctctcacagGTCACAATCGGTGGACAAGCAACCTACTATGTGTCATATCAAAGGAAGGCATTTGCCCAGATCAAGTTACCCAAGTACTCCTTGCCAAAGgtactgttcaagagatgatctgatgacccattaaaagcccttacttagta Alignment from Spaln_nt2Genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG acaaggtctgagacctccatgattacaaagtgaaaactcttctctcacagGTCACAATCGGTGGACAAGCAACCTACTATGTGTCATATCAAAGGAAGGCATTTGCCCAGATCAAGTTACCCAAGTACTCCTTGCCAAAGgtactgttcaagagatgatctgatgacccattaaaagcccttacttagta Alignment from Pairagon GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG acaaggtctgagacctccatgattacaaagtgaaaactcttctctcacagGTCACAATCGGTGGACAAGCAACCTACTATGTGTCATATCAAAGGAAGGCATTTGCCCAGATCAAGTTACCCAAGTACTCCTTGCCAAAGgtactgttcaagagatgatctgatgacccattaaaagcccttacttagta Alignment from Exonerate_protein2genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG acaaggtctgagacctccatgattacaaagtgaaaactcttctctcacagGTCACAATCGGTGGACAAGCAACCTACTATGTGTCATATCAAAGGAAGGCATTTGCCCAGATCAAGTTACCCAAGTACTCCTTGCCAAAGgtactgttcaagagatgatctgatgacccattaaaagcccttacttagta Alignment from Exonerate_coding2genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG acaaggtctgagacctccatgattacaaagtgaaaactcttctctcacagGTCACAATCGGTGGACAAGCAACCTACTATGTGTCATATCAAAGGAAGGCATTTGCCCAGATCAAGTTACCCAAGTACTCCTTGCCAAAGgtactgttcaagagatgatctgatgacccattaaaagcccttacttagta Alignment from GeneWise GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG acaaggtctgagacctccatgattacaaagtgaaaactcttctctcacagGTCACAATCGGTGGACAAGCAACCTACTATGTGTCATATCAAAGGAAGGCATTTGCCCAGATCAAGTTACCCAAGTACTCCTTGCCAAAGgtactgttcaagagatgatctgatgacccattaaaagcccttacttagta #### Sorcs3_ID10602_9 --> 0 - 0 Original Alignment GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaggaagcacatattactacatatgcttctggcttttttgcttataacagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGCATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTGATGGGCAACATAGTCATTGATTTGTATGAGgtatcattccctttctatagatttccctgttcttcaatgtatattttctc Alignment from CESAR GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaggaagcacatattactacatatgcttctggcttttttgcttataacagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGCATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTGATGGGCAACATAGTCATTGATTTGTATGAGgtatcattccctttctatagatttccctgttcttcaatgtatattttctc Alignment from Spaln_aa2Genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaggaagcacatattactacatatgcttctggcttttttgcttataacagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGCATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTGATGGGCAACATAGTCATTGATTTGTATGAGgtatcattccctttctatagatttccctgttcttcaatgtatattttctc Alignment from Spaln_nt2Genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaggaagcacatattactacatatgcttctggcttttttgcttataacagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGCATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTGATGGGCAACATAGTCATTGATTTGTATGAGgtatcattccctttctatagatttccctgttcttcaatgtatattttctc Alignment from Pairagon GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaggaagcacatattactacatatgcttctggcttttttgcttataacagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGCATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTGATGGGCAACATAGTCATTGATTTGTATGAGgtatcattccctttctatagatttccctgttcttcaatgtatattttctc Alignment from Exonerate_protein2genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaggaagcacatattactacatatgcttctggcttttttgcttataacagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGCATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTGATGGGCAACATAGTCATTGATTTGTATGAGgtatcattccctttctatagatttccctgttcttcaatgtatattttctc Alignment from Exonerate_coding2genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaggaagcacatattactacatatgcttctggcttttttgcttataacagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGCATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTGATGGGCAACATAGTCATTGATTTGTATGAGgtatcattccctttctatagatttccctgttcttcaatgtatattttctc Alignment from GeneWise GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaggaagcacatattactacatatgcttctggcttttttgcttataacagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGCATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTGATGGGCAACATAGTCATTGATTTGTATGAGgtatcattccctttctatagatttccctgttcttcaatgtatattttctc #### Sorcs3_ID10613_14 --> 1 - 2 Original Alignment gGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGac cagattagattatggtgtcggctgtattatgggttttgtcttctctgcaggGTCAGTTTCGAGGAAGGCCATTCTTGGGACAAATATGACTTCAGATTGCTACCACTATTTGTGGATGGAGTATTAGTGGAAGCAGGAGTCGAGACCCACATCATTatgtaaggagtgtggcataaactagtgaattttgtttaaatgacctctacaa Alignment from CESAR gGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGac cagattagattatggtgtcggctgtattatgggttttgtcttctctgcaggGTCAGTTTCGAGGAAGGCCATTCTTGGGACAAATATGACTTCAGATTGCTACCACTATTTGTGGATGGAGTATTAGTGGAAGCAGGAGTCGAGACCCACATCATTatgtaaggagtgtggcataaactagtgaattttgtttaaatgacctctacaa Alignment from Spaln_aa2Genome GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC cagattagattatggtgtcggctgtattatgggttttgtcttctctgcagGGTCAGTTTCGAGGAAGGCCATTCTTGGGACAAATATGACTTCAGATTGCTACCACTATTTGTGGATGGAGTATTAGTGGAAGCAGGAGTCGAGACCCACATCATTATgtaaggagtgtggcataaactagtgaattttgtttaaatgacctctacaa Alignment from Spaln_nt2Genome GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC cagattagattatggtgtcggctgtattatgggttttgtcttctctgcagGGTCAGTTTCGAGGAAGGCCATTCTTGGGACAAATATGACTTCAGATTGCTACCACTATTTGTGGATGGAGTATTAGTGGAAGCAGGAGTCGAGACCCACATCATTATgtaaggagtgtggcataaactagtgaattttgtttaaatgacctctacaa Alignment from Pairagon GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC cagattagattatggtgtcggctgtattatgggttttgtcttctctgcagGGTCAGTTTCGAGGAAGGCCATTCTTGGGACAAATATGACTTCAGATTGCTACCACTATTTGTGGATGGAGTATTAGTGGAAGCAGGAGTCGAGACCCACATCATTATgtaaggagtgtggcataaactagtgaattttgtttaaatgacctctacaa Alignment from Exonerate_protein2genome GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC cagattagattatggtgtcggctgtattatgggttttgtcttctctgcagGGTCAGTTTCGAGGAAGGCCATTCTTGGGACAAATATGACTTCAGATTGCTACCACTATTTGTGGATGGAGTATTAGTGGAAGCAGGAGTCGAGACCCACATCATTATgtaaggagtgtggcataaactagtgaattttgtttaaatgacctctacaa Alignment from Exonerate_coding2genome GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC cagattagattatggtgtcggctgtattatgggttttgtcttctctgcagGGTCAGTTTCGAGGAAGGCCATTCTTGGGACAAATATGACTTCAGATTGCTACCACTATTTGTGGATGGAGTATTAGTGGAAGCAGGAGTCGAGACCCACATCATTATgtaaggagtgtggcataaactagtgaattttgtttaaatgacctctacaa Alignment from GeneWise GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC cagattagattatggtgtcggctgtattatgggttttgtcttctctgcagGGTCAGTTTCGAGGAAGGCCATTCTTGGGACAAATATGACTTCAGATTGCTACCACTATTTGTGGATGGAGTATTAGTGGAAGCAGGAGTCGAGACCCACATCATTATgtaaggagtgtggcataaactagtgaattttgtttaaatgacctctacaa #### Sorcs3_ID10633_22 --> 2 - 0 Original Alignment aaTACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagaccctgttccttgcactccttccattgtttctgatttgcccttgcagaaTACTTCCAGTCACAGCTCTTATCCTTTTCACCAAATCTTGATTACCACAATCTTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGCGCTCTGATAAAAgtaaaagtgtagcatggcaacgtgatgaagagtgctctgataatagttgt Alignment from CESAR aaTACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagaccctgttccttgcactccttccattgtttctgatttgcccttgcagaaTACTTCCAGTCACAGCTCTTATCCTTTTCACCAAATCTTGATTACCACAATCTTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGCGCTCTGATAAAAgtaaaagtgtagcatggcaacgtgatgaagagtgctctgataatagttgt Alignment from Spaln_aa2Genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagaccctgttccttgcactccttccattgtttctgatttgcccttgcagAATACTTCCAGTCACAGCTCTTATCCTTTTCACCAAATCTTGATTACCACAATCTTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGCGCTCTGATAAAAgtaaaagtgtagcatggcaacgtgatgaagagtgctctgataatagttgt Alignment from Spaln_nt2Genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagaccctgttccttgcactccttccattgtttctgatttgcccttgcagAATACTTCCAGTCACAGCTCTTATCCTTTTCACCAAATCTTGATTACCACAATCTTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGCGCTCTGATAAAAgtaaaagtgtagcatggcaacgtgatgaagagtgctctgataatagttgt Alignment from Pairagon AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagaccctgttccttgcactccttccattgtttctgatttgcccttgcagAATACTTCCAGTCACAGCTCTTATCCTTTTCACCAAATCTTGATTACCACAATCTTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGCGCTCTGATAAAAgtaaaagtgtagcatggcaacgtgatgaagagtgctctgataatagttgt Alignment from Exonerate_protein2genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagaccctgttccttgcactccttccattgtttctgatttgcccttgcagAATACTTCCAGTCACAGCTCTTATCCTTTTCACCAAATCTTGATTACCACAATCTTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGCGCTCTGATAAAAgtaaaagtgtagcatggcaacgtgatgaagagtgctctgataatagttgt Alignment from Exonerate_coding2genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagaccctgttccttgcactccttccattgtttctgatttgcccttgcagAATACTTCCAGTCACAGCTCTTATCCTTTTCACCAAATCTTGATTACCACAATCTTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGCGCTCTGATAAAAgtaaaagtgtagcatggcaacgtgatgaagagtgctctgataatagttgt Alignment from GeneWise AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagaccctgttccttgcactccttccattgtttctgatttgcccttgcagAATACTTCCAGTCACAGCTCTTATCCTTTTCACCAAATCTTGATTACCACAATCTTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGCGCTCTGATAAAAgtaaaagtgtagcatggcaacgtgatgaagagtgctctgataatagttgt #### Sorcs3_ID10636_24 --> 0 - 1 Original Alignment ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAg gacatatgcattgtcactgtatgcagtcatgcagaggtttgtttttccagGCTGTGGAGACGCAGTTTAACGCACTTAACCAC---TTAGTGCAATTTGAACTAAAGCCTGGTGTCCAGGTGCTGATTTTTGTCACACAGCTTGTATTAggtgggccagtgaaatttgaactaaggccaggtacatgtactgacgagaaa Alignment from CESAR ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAg gacatatgcattgtcactgtatgcagtcatgcagaggtttgtttttccagGCTGTGGAGACGCAGTTTAACGCACTTAACCAC---TTAGTGCAATTTGAACTAAAGCCTGGTGTCCAGGTGCTGATTTTTGTCACACAGCTTGTATTAggtgggccagtgaaatttgaactaaggccaggtacatgtactgacgagaaa Alignment from Spaln_aa2Genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG gacatatgcattgtcactgtatgcagtcatgcagaggtttgtttttccagGCTGTGGAGACGCAGTTTAACGCACTTAACCAC---TTAGTGCAATTTGAACTAAAGCCTGGTGTCCAGGTGCTGATTTTTGTCACACAGCTTGTATTAGgtgggccagtgaaatttgaactaaggccaggtacatgtactgacgagaaa Alignment from Spaln_nt2Genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG gacatatgcattgtcactgtatgcagtcatgcagaggtttgtttttccagGCTGTGGAGACGCAGTTTAACGCACTTAACC---ACTTAGTGCAATTTGAACTAAAGCCTGGTGTCCAGGTGCTGATTTTTGTCACACAGCTTGTATTAGgtgggccagtgaaatttgaactaaggccaggtacatgtactgacgagaaa Alignment from Pairagon ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG gacatatgcattgtcactgtatgcagtcatgcagaggtttgtttttccagGCTGTGGAGACGCAGTTTAACGCACTTAACC---ACTTAGTGCAATTTGAACTAAAGCCTGGTGTCCAGGTGCTGATTTTTGTCACACAGCTTGTATTAGgtgggccagtgaaatttgaactaaggccaggtacatgtactgacgagaaa Alignment from Exonerate_protein2genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG gacatatgcattgtcactgtatgcagtcatgcagaggtttgtttttccagGCTGTGGAGACGCAGTTTAACGCACTTAAC---CACTTAGTGCAATTTGAACTAAAGCCTGGTGTCCAGGTGCTGATTTTTGTCACACAGCTTGTATTAGgtgggccagtgaaatttgaactaaggccaggtacatgtactgacgagaaa Alignment from Exonerate_coding2genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG gacatatgcattgtcactgtatgcagtcatgcagaggtttgtttttccagGCTGTGGAGACGCAGTTTAACGCACTTAAC---CACTTAGTGCAATTTGAACTAAAGCCTGGTGTCCAGGTGCTGATTTTTGTCACACAGCTTGTATTAGgtgggccagtgaaatttgaactaaggccaggtacatgtactgacgagaaa Alignment from GeneWise ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG gacatatgcattgtcactgtatgcagtcatgcagaggtttgtttttccagGCTGTGGAGACGCAGTTTAACGCACTTAAC---CACTTAGTGCAATTTGAACTAAAGCCTGGTGTCCAGGTGCTGATTTTTGTCACACAGCTTGTATTAGgtgggccagtgaaatttgaactaaggccaggtacatgtactgacgagaaa #### Sptbn2_ID608_3 --> 0 - 0 Original Alignment CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG atttttgtgtgtaactaaataccgttttgcttcgtgttttctttctgcagTCAAAGCCAACGAAAGGCAGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACCTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtgagtgtgatctttattcataatgcaaccccgggggattactgtctaac Alignment from CESAR CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG atttttgtgtgtaactaaataccgttttgcttcgtgttttctttctgcagTCAAAGCCAACGAAAGGCAGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACCTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtgagtgtgatctttattcataatgcaaccccgggggattactgtctaac Alignment from Spaln_aa2Genome CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG atttttgtgtgtaactaaataccgttttgcttcgtgttttctttctgcagTCAAAGCCAACGAAAGGCAGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACCTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtgagtgtgatctttattcataatgcaaccccgggggattactgtctaac Alignment from Spaln_nt2Genome CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG atttttgtgtgtaactaaataccgttttgcttcgtgttttctttctgcagTCAAAGCCAACGAAAGGCAGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACCTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtgagtgtgatctttattcataatgcaaccccgggggattactgtctaac Alignment from Pairagon CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG atttttgtgtgtaactaaataccgttttgcttcgtgttttctttctgcagTCAAAGCCAACGAAAGGCAGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACCTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtgagtgtgatctttattcataatgcaaccccgggggattactgtctaac Alignment from Exonerate_protein2genome atttttgtgtgtaactaaataccgttttgcttcgtgttttctttctgcagtcaaagccaacgaaaggcaggatgcagattcactgcctagaaaatgtagataaagcactgcagttcctgaaggaacagaaagtgcacctgcagaacacaggctcacatgatattgttgatggaaaccatcacctgactcttgggctagtctggactattgtactccgattccaggtgagtgtgatctttattcataatgcaaccccgggggattactgtctaac Alignment from Exonerate_coding2genome atttttgtgtgtaactaaataccgttttgcttcgtgttttctttctgcagtcaaagccaacgaaaggcaggatgcagattcactgcctagaaaatgtagataaagcactgcagttcctgaaggaacagaaagtgcacctgcagaacacaggctcacatgatattgttgatggaaaccatcacctgactcttgggctagtctggactattgtactccgattccaggtgagtgtgatctttattcataatgcaaccccgggggattactgtctaac Alignment from GeneWise CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG atttttgtgtgtaactaaataccgttttgcttcgtgttttctttctgcagTCAAAGCCAACGAAAGGCAGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACCTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtgagtgtgatctttattcataatgcaaccccgggggattactgtctaac #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment AAGACTGCAgg aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg AAAACAGCTgggtaaggtgatgtgaccaggagttctgtttctctcctcaggTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTCAATGCCATCATACATAAACACcggtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from CESAR AAGACTGCAgg aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg AAAACAGCTgggtgagttgatgtgaccaggagttctgtttctctcctcaggTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTCAATGCCATCATACATAAACACcggtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from Spaln_aa2Genome AAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG AAAACAGCTGGgtaaggtgatgtgaccaggagttctgtttctctcctcagGTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTCAATGCCATCATACATAAACACCGgtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from Spaln_nt2Genome AAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG AAAACAGCTGGgtaaggtgatgtgaccaggagttctgtttctctcctcagGTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTCAATGCCATCATACATAAACACCGgtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from Pairagon AAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG AAAACAGCTGGgtaaggtgatgtgaccaggagttctgtttctctcctcagGTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTCAATGCCATCATACATAAACACCGgtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from Exonerate_protein2genome aaaacagctgggtaaggtgatgtgaccaggagttctgtttctctcctcaggtaccccaatgtaaatgtgcataacttcaccaccagctggagagatgggctagctttcaatgccatcatacataaacaccggtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from Exonerate_coding2genome aaaacagctgggtaaggtgatgtgaccaggagttctgtttctctcctcaggtaccccaatgtaaatgtgcataacttcaccaccagctggagagatgggctagctttcaatgccatcatacataaacaccggtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg Alignment from GeneWise AAGACTGCAGG ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG AAAACAGCTGGgtaaggtgatgtgaccaggagttctgtttctctcctcagGTACCCCAATGTAAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCTTTCAATGCCATCATACATAAACACCGgtagaggtttgaggtcatagctacttctgatttacctatttatttgcatg #### Sptbn2_ID614_9 --> 1 - 0 Original Alignment gTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gttacacgtagcaaaggtgaactgatctttttgaaaattttaccatttaggTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAACTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtgccgatttttctattgatctgtccaccccacaggccacgttaccactc Alignment from CESAR gTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gttacacgtagcaaaggtgaactgatctttttgaaaattttaccatttaggTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAACTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtgccgatttttctattgatctgtccaccccacaggccacgttaccactc Alignment from Spaln_aa2Genome GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gttacacgtagcaaaggtgaactgatctttttgaaaattttaccatttagGTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAACTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtgccgatttttctattgatctgtccaccccacaggccacgttaccactc Alignment from Spaln_nt2Genome GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gttacacgtagcaaaggtgaactgatctttttgaaaattttaccatttagGTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAACTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtgccgatttttctattgatctgtccaccccacaggccacgttaccactc Alignment from Pairagon GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gttacacgtagcaaaggtgaactgatctttttgaaaattttaccatttagGTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAACTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtgccgatttttctattgatctgtccaccccacaggccacgttaccactc Alignment from Exonerate_protein2genome gttacacgtagcaaaggtgaactgatctttttgaaaattttaccatttaggttcacagagaaagggaatttggaggtgttgctcttcacaatacagagtaaactccaggccaacaatcagaaggtttacacaccccgagaaggccgtcacatttcagacatcaacaaggtgccgatttttctattgatctgtccaccccacaggccacgttaccactc Alignment from Exonerate_coding2genome gttacacgtagcaaaggtgaactgatctttttgaaaattttaccatttaggttcacagagaaagggaatttggaggtgttgctcttcacaatacagagtaaactccaggccaacaatcagaaggtttacacaccccgagaaggccgtcacatttcagacatcaacaaggtgccgatttttctattgatctgtccaccccacaggccacgttaccactc Alignment from GeneWise GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gttacacgtagcaaaggtgaactgatctttttgaaaattttaccatttagGTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAACTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtgccgatttttctattgatctgtccaccccacaggccacgttaccactc #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment Gag cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GaggtaagtccatatagttatctattactgctgacccttggttccctcagcACAAGACTAACGATATGGCAAGCCCAGGTAGACAAGCTGTATGCAAGTCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGGAGAGAGTTAGATGATTTAGAACAATGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCATGACTATGAACATGTAACTgtaagtctataattttttatctaggtccaaaatatgtgttgtttgattgc Alignment from CESAR Gag cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GaggtaagcccatatagttatctattactgctgacccttggttccctcagcACAAGACTAACGATATGGCAAGCCCAGGTAGACAAGCTGTATGCAAGTCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGGAGAGAGTTAGATGATTTAGAACAATGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCATGACTATGAACATGTAACTgtaagtctataattttttatctaggtccaaaatatgtgttgtttgattgc Alignment from Spaln_aa2Genome GAG CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GAGgtaagtccatatagttatctattactgctgacccttggttccctcagCACAAGACTAACGATATGGCAAGCCCAGGTAGACAAGCTGTATGCAAGTCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGGAGAGAGTTAGATGATTTAGAACAATGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCATGACTATGAACATGTAACTgtaagtctataattttttatctaggtccaaaatatgtgttgtttgattgc Alignment from Spaln_nt2Genome GAG CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GAGgtaagtccatatagttatctattactgctgacccttggttccctcagCACAAGACTAACGATATGGCAAGCCCAGGTAGACAAGCTGTATGCAAGTCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGGAGAGAGTTAGATGATTTAGAACAATGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCATGACTATGAACATGTAACTgtaagtctataattttttatctaggtccaaaatatgtgttgtttgattgc Alignment from Pairagon GAG CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GAGgtaagtccatatagttatctattactgctgacccttggttccctcagCACAAGACTAACGATATGGCAAGCCCAGGTAGACAAGCTGTATGCAAGTCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGGAGAGAGTTAGATGATTTAGAACAATGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCATGACTATGAACATGTAACTgtaagtctataattttttatctaggtccaaaatatgtgttgtttgattgc Alignment from Exonerate_protein2genome GAG CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GAGgtaagtccatatagttatctattactgctgacccttggttccctcagCACAAGACTAACGATATGGCAAGCCCAGGTAGACAAGCTGTATGCAAGTCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGGAGAGAGTTAGATGATTTAGAACAATGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCATGACTATGAACATGTAACTgtaagtctataattttttatctaggtccaaaatatgtgttgtttgattgc Alignment from Exonerate_coding2genome GAG CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GAGgtaagtccatatagttatctattactgctgacccttggttccctcagCACAAGACTAACGATATGGCAAGCCCAGGTAGACAAGCTGTATGCAAGTCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGGAGAGAGTTAGATGATTTAGAACAATGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCATGACTATGAACATGTAACTgtaagtctataattttttatctaggtccaaaatatgtgttgtttgattgc Alignment from GeneWise GAG CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT GAGgtaagtccatatagttatctattactgctgacccttggttccctcagCACAAGACTAACGATATGGCAAGCCCAGGTAGACAAGCTGTATGCAAGTCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGTCTGCAGGAGCACCTCCGGCCATGCCAACTCCGGAGAGAGTTAGATGATTTAGAACAATGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCATGACTATGAACATGTAACTgtaagtctataattttttatctaggtccaaaatatgtgttgtttgattgc #### Sptbn2_ID639_34 --> 1 - 2 Original Alignment gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg cactccccctagcttctaacattgatagataactcttgctttcatttcaggTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGTTTCTACAAGGATGCAAAGGCCGCCAGTGCTGGGGTACCATAT------GAACTGCCCGTCAGCCTGGCTAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGAAAGCGCAAACATGTTTTCAAACTGgggtgagtttgtaggcttaacttagtgggcacgcacctatcctagggttttg Alignment from CESAR gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg cactccccctagcttctaacattgatagataactcttgctttcatttcaggTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGTTTCTACAAGGATGCAAAGGCCGCCAGTGCTGGGGTACCATAT------GAACTGCCCGTCAGCCTGGCTAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGAAAGCGCAAACATGTTTTCAAACTGgggtgagtttgtaggcttaacttagtgggcacgcacctatcctagggttttg Alignment from Spaln_aa2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcttctaacattgatagataactcttgctttcatttcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGTTTCTACAAGGATGCAAAGGCCGCCAGTGCTGGGGTACCATAT------GAACTGCCCGTCAGCCTGGCTAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGAAAGCGCAAACATGTTTTCAAACTGGGgtgagtttgtaggcttaacttagtgggcacgcacctatcctagggttttg Alignment from Spaln_nt2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcttctaacattgatagataactcttgctttcatttcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGTTTCTACAAGGATGCAAAGGCCGCCAGTGCTGGGGTACCATA------TGAACTGCCCGTCAGCCTGGCTAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGAAAGCGCAAACATGTTTTCAAACTGGGgtgagtttgtaggcttaacttagtgggcacgcacctatcctagggttttg Alignment from Pairagon GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcttctaacattgatagataactcttgctttcatttcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGTTTCTACAAGGATGCAAAGGCCGCCAGTGCTGGGGTACCATAT------GAACTGCCCGTCAGCCTGGCTAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGAAAGCGCAAACATGTTTTCAAACTGGGgtgagtttgtaggcttaacttagtgggcacgcacctatcctagggttttg Alignment from Exonerate_protein2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcttctaacattgatagataactcttgctttcatttcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGTTTCTACAAGGATGCAAAGGCCGCCAGTGCTGGGGTACCATAT------GAACTGCCCGTCAGCCTGGCTAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGAAAGCGCAAACATGTTTTCAAACTGGGgtgagtttgtaggcttaacttagtgggcacgcacctatcctagggttttg Alignment from Exonerate_coding2genome cactccccctagcttctaacattgatagataactcttgctttcatttcaggtcatggcaaaatgtgtattgcgtacttaggtgtggaagccttggtttctacaaggatgcaaaggccgccagtgctggggtaccatatgaactgcccgtcagcctggctagggcccaaggtagtgtggcgtttgattatagaaagcgcaaacatgttttcaaactggggtgagtttgtaggcttaacttagtgggcacgcacctatcctagggttttg Alignment from GeneWise GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcttctaacattgatagataactcttgctttcatttcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGTTTCTACAAGGATGCAAAGGCCGCCAGTGCTGGGGTACCATAT------GAACTGCCCGTCAGCCTGGCTAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGAAAGCGCAAACATGTTTTCAAACTGGGgtgagtttgtaggcttaacttagtgggcacgcacctatcctagggttttg #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtagagggtgtttactgccactttctaaatgtgctgtgtctgttaattaggGCCTCAGAGCAAGAGAAGACA---------------GTAGAATTGTGGCGAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaagttaaagtagggtatgtcaatggttcatatctgatgccccccatac Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtagagggtgtttactgccactttctaaatgtgctgtgtctgttaattaggGCCTCAGAGCAAGAGAAGACA---------------GTAGAATTGTGGCGAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaagttaaagtagggtatgtcaatggttcatatctgatgccccccatac Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtagagggtgtttactgccactttctaaatgtgctgtgtctgttaattagGGCCTCAGAGCAAGAGAAGACA---------------GTAGAATTGTGGCGAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaagttaaagtagggtatgtcaatggttcatatctgatgccccccatac Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtagagggtgtttactgccactttctaaatgtgctgtgtctgttaattagGGCCTCAGAGCAAGAGAAGA-----CA----------GTAGAATTGTGGCGAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaagttaaagtagggtatgtcaatggttcatatctgatgccccccatac Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtagagggtgtttactgccactttctaaatgtgctgtgtctgttaattagGGCCTCAGAGCAAGAGAAGA---------------CAGTAGAATTGTGGCGAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaagttaaagtagggtatgtcaatggttcatatctgatgccccccatac Alignment from Exonerate_protein2genome AGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtagagggtgtttactgccactttctaaatgtgctgtgtctgttaattagggcctcagAGCAAGAGAAGACAGTAGAATTGTGGCGAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaagttaaagtagggtatgtcaatggttcatatctgatgccccccatac Alignment from Exonerate_coding2genome CTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAGATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG GTAGAGGGTGTTTACTGCCACTTTCTAAATGTGCTGTGTCTGTTAATTAGGGCCTCAGAGCAAGAGAAGACAGTAGAATTGTGGCGAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaagttaaagtagggtatgtcaatggttcatatctgatgccccccatac Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtagagggtgtttactgccactttctaaatgtgctgtgtctgttaattagGGCCTCAGAGCAAGAGAAGACA---------------GTAGAATTGTGGCGAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaagttaaagtagggtatgtcaatggttcatatctgatgccccccatac #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagtAGTTTGAGTGTGACACCCGGCGGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGtggtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagtAGTTTGAGTGTGACACCCGGCGGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGtggtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagTAGTTTGAGTGTGACACCCGGCGGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagTAGTTTGAGTGTGACACCCGGCGGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from Pairagon GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagTAGTTTGAGTGTGACACCCGGCGGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagTAGTTTGAGTGTGACACCCGGCGGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from Exonerate_coding2genome TGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGAT-GGGGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG GCCTATTGATTACCTTCTCTCAAAGTCTACCTGTTACCTCTTCTCCTAAGTAGTTTGAGTGTGACACCCGGCGGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcctattgattaccttctctcaaagtctacctgttacctcttctcctaagTAGTTTGAGTGTGACACCCGGCGGCAAAAGCCGGATCTTCAAGCCTCTCTCTATTCAGACCATGTGgtaagtggtccaaattataagtttccaaggatacttggttgaccttctaa #### Ssh3_ID454_2 --> 0 - 2 Original Alignment CAGGACCGAGTGGTAAGACGCAGAGGCCGG---CTCCAGCGCag catacttcacatccacatctcaagacttcctccttgctgtgaccccacagGAAGACCGTGTGGTGAGGCGAAGGGGTCGTCTCCTCCAGCGCaggtgagtatctttccttttatatatggcttatcaaagctcagaagaagtaa Alignment from CESAR CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTC---CAGCGCag catacttcacatccacatctcaagacttcctccttgctgtgaccccacagGAAGACCGTGTGGTGAGGCGAAGGGGTCGTCTCCTCCAGCGCaggtgagtatctttccttttatatatggcttatcaaagctcagaagaagtaa Alignment from Spaln_aa2Genome CAGGACCGAGTGGTAAGACGCAGAGGCCGG---CTCCAGCGCAG catacttcacatccacatctcaagacttcctccttgctgtgaccccacagGAAGACCGTGTGGTGAGGCGAAGGGGTCGTCTCCTCCAGCGCAGgtgagtatctttccttttatatatggcttatcaaagctcagaagaagtaa Alignment from Spaln_nt2Genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCC---AGCGCAG catacttcacatccacatctcaagacttcctccttgctgtgaccccacagGAAGACCGTGTGGTGAGGCGAAGGGGTCGTCTCCTCCAGCGCAGgtgagtatctttccttttatatatggcttatcaaagctcagaagaagtaa Alignment from Pairagon CAGGACCGAGTGGTAAGACGCAGAGGCCG---GCTCCAGCGCAG catacttcacatccacatctcaagacttcctccttgctgtgaccccacagGAAGACCGTGTGGTGAGGCGAAGGGGTCGTCTCCTCCAGCGCAGgtgagtatctttccttttatatatggcttatcaaagctcagaagaagtaa Alignment from Exonerate_protein2genome CAGGACCGAGTGGTAAGACGCAGAGGCCGG---CTCCAGCGCAG catacttcacatccacatctcaagacttcctccttgctgtgaccccacagGAAGACCGTGTGGTGAGGCGAAGGGGTCGTCTCCTCCAGCGCAGgtgagtatctttccttttatatatggcttatcaaagctcagaagaagtaa Alignment from Exonerate_coding2genome catacttcacatccacatctcaagacttcctccttgctgtgaccccacaggaagaccgtgtggtgaggcgaaggggtcgtctcctccagcgcaggtgagtatctttccttttatatatggcttatcaaagctcagaagaagtaa Alignment from GeneWise catacttcacatccacatctcaagacttcctccttgctgtgaccccacaggaagaccgtgtggtgaggcgaaggggtcgtctcctccagcgcaggtgagtatctttccttttatatatggcttatcaaagctcagaagaagtaa #### Stambpl1_ID6894_2 --> 0 - 2 Original Alignment AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAac cagttgatcctacttgatgatattctgccctttcttccatttaaaaccagAAAAAGCTAGCTGCTATGCCAGACCATACTGATGTATCCCTAAGTCCTGAGGAGAGAGTTCGTGCCTTAAGCAAACTTGCTTGTAATATCTCCATTATTGAAGACATCACTCCATGTCACTACTTCACATCTGGAGTGGAGATGGAAAGGATGGCACCTGTTTATTTAGAGGAGGGAAACCTTGAAAATGCTTTTGTTCTTTATAATAAATTTATAacgtaccacaacaaaatatggcctacaataactatgcagtccatagccaccc Alignment from CESAR AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAac cagttgatcctacttgatgatattctgccctttcttccatttaaaaccagAAAAAGCTAGCTGCTATGCCAGACCATACTGATGTATCCCTAAGTCCTGAGGAGAGAGTTCGTGCCTTAAGCAAACTTGCTTGTAATATCTCCATTATTGAAGACATCACTCCATGTCACTACTTCACATCTGGAGTGGAGATGGAAAGGATGGCACCTGTTTATTTAGAGGAGGGAAACCTTGAAAATGCTTTTGTTCTTTATAATAAATTTATAacgtaccacaacaaaatatggcctacaataactatgcagtccatagccaccc Alignment from Spaln_aa2Genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC cagttgatcctacttgatgatattctgccctttcttccatttaaaaccagAAAAAGCTAGCTGCTATGCCAGACCATACTGATGTATCCCTAAGTCCTGAGGAGAGAGTTCGTGCCTTAAGCAAACTTGCTTGTAATATCTCCATTATTGAAGACATCACTCCATGTCACTACTTCACATCTGGAGTGGAGATGGAAAGGATGGCACCTGTTTATTTAGAGGAGGGAAACCTTGAAAATGCTTTTGTTCTTTATAATAAATTTATAACgtaccacaacaaaatatggcctacaataactatgcagtccatagccaccc Alignment from Spaln_nt2Genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC cagttgatcctacttgatgatattctgccctttcttccatttaaaaccagAAAAAGCTAGCTGCTATGCCAGACCATACTGATGTATCCCTAAGTCCTGAGGAGAGAGTTCGTGCCTTAAGCAAACTTGCTTGTAATATCTCCATTATTGAAGACATCACTCCATGTCACTACTTCACATCTGGAGTGGAGATGGAAAGGATGGCACCTGTTTATTTAGAGGAGGGAAACCTTGAAAATGCTTTTGTTCTTTATAATAAATTTATAACgtaccacaacaaaatatggcctacaataactatgcagtccatagccaccc Alignment from Pairagon AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC cagttgatcctacttgatgatattctgccctttcttccatttaaaaccagAAAAAGCTAGCTGCTATGCCAGACCATACTGATGTATCCCTAAGTCCTGAGGAGAGAGTTCGTGCCTTAAGCAAACTTGCTTGTAATATCTCCATTATTGAAGACATCACTCCATGTCACTACTTCACATCTGGAGTGGAGATGGAAAGGATGGCACCTGTTTATTTAGAGGAGGGAAACCTTGAAAATGCTTTTGTTCTTTATAATAAATTTATAACgtaccacaacaaaatatggcctacaataactatgcagtccatagccaccc Alignment from Exonerate_protein2genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC cagttgatcctacttgatgatattctgccctttcttccatttaaaaccagAAAAAGCTAGCTGCTATGCCAGACCATACTGATGTATCCCTAAGTCCTGAGGAGAGAGTTCGTGCCTTAAGCAAACTTGCTTGTAATATCTCCATTATTGAAGACATCACTCCATGTCACTACTTCACATCTGGAGTGGAGATGGAAAGGATGGCACCTGTTTATTTAGAGGAGGGAAACCTTGAAAATGCTTTTGTTCTTTATAATAAATTTATAACgtaccacaacaaaatatggcctacaataactatgcagtccatagccaccc Alignment from Exonerate_coding2genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC cagttgatcctacttgatgatattctgccctttcttccatttaaaaccagAAAAAGCTAGCTGCTATGCCAGACCATACTGATGTATCCCTAAGTCCTGAGGAGAGAGTTCGTGCCTTAAGCAAACTTGCTTGTAATATCTCCATTATTGAAGACATCACTCCATGTCACTACTTCACATCTGGAGTGGAGATGGAAAGGATGGCACCTGTTTATTTAGAGGAGGGAAACCTTGAAAATGCTTTTGTTCTTTATAATAAATTTATAACgtaccacaacaaaatatggcctacaataactatgcagtccatagccaccc Alignment from GeneWise AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC cagttgatcctacttgatgatattctgccctttcttccatttaaaaccagAAAAAGCTAGCTGCTATGCCAGACCATACTGATGTATCCCTAAGTCCTGAGGAGAGAGTTCGTGCCTTAAGCAAACTTGCTTGTAATATCTCCATTATTGAAGACATCACTCCATGTCACTACTTCACATCTGGAGTGGAGATGGAAAGGATGGCACCTGTTTATTTAGAGGAGGGAAACCTTGAAAATGCTTTTGTTCTTTATAATAAATTTATAACgtaccacaacaaaatatggcctacaataactatgcagtccatagccaccc #### Stambpl1_ID6901_8 --> 0 - 2 Original Alignment ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAga cctaacaacctaataactcaataaacacaaaagaaaactcttcccgtcagACACACCCGACACAATCAGCATTTCTGTCCAGACTGGATCTACGCAGTTACTGTGCCTATCAGCTCATGTTGCCACAAGTGAAAACTATAGTGTGTTCCTCAAAGCATAGGgagttagtggtgcagaatgatatgctgtagtcaaaacaaatcatagaactga Alignment from CESAR ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAga cctaacaacctaataactcaataaacacaaaagaaaactcttcccgtcagACACACCCGACACAATCAGCATTTCTGTCCAGACTGGATCTACGCAGTTACTGTGCCTATCAGCTCATGTTGCCACAAGTGAAAACTATAGTGTGTTCCTCAAAGCATAGGgagttagtggtgcagaatgatatgctgtagtcaaaacaaatcatagaactga Alignment from Spaln_aa2Genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA cctaacaacctaataactcaataaacacaaaagaaaactcttcccgtcagACACACCCGACACAATCAGCATTTCTGTCCAGACTGGATCTACGCAGTTACTGTGCCTATCAGCTCATGTTGCCACAAGTGAAAACTATAGTGTGTTCCTCAAAGCATAGGGAgttagtggtgcagaatgatatgctgtagtcaaaacaaatcatagaactga Alignment from Spaln_nt2Genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA cctaacaacctaataactcaataaacacaaaagaaaactcttcccgtcagACACACCCGACACAATCAGCATTTCTGTCCAGACTGGATCTACGCAGTTACTGTGCCTATCAGCTCATGTTGCCACAAGTGAAAACTATAGTGTGTTCCTCAAAGCATAGGGAgttagtggtgcagaatgatatgctgtagtcaaaacaaatcatagaactga Alignment from Pairagon ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA cctaacaacctaataactcaataaacacaaaagaaaactcttcccgtcagACACACCCGACACAATCAGCATTTCTGTCCAGACTGGATCTACGCAGTTACTGTGCCTATCAGCTCATGTTGCCACAAGTGAAAACTATAGTGTGTTCCTCAAAGCATAGGGAgttagtggtgcagaatgatatgctgtagtcaaaacaaatcatagaactga Alignment from Exonerate_protein2genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA cctaacaacctaataactcaataaacacaaaagaaaactcttcccgtcagACACACCCGACACAATCAGCATTTCTGTCCAGACTGGATCTACGCAGTTACTGTGCCTATCAGCTCATGTTGCCACAAGTGAAAACTATAGTGTGTTCCTCAAAGCATAGGGAgttagtggtgcagaatgatatgctgtagtcaaaacaaatcatagaactga Alignment from Exonerate_coding2genome cctaacaacctaataactcaataaacacaaaagaaaactcttcccgtcagacacacccgacacaatcagcatttctgtccagactggatctacgcagttactgtgcctatcagctcatgttgccacaagtgaaaactatagtgtgttcctcaaagcatagggagttagtggtgcagaatgatatgctgtagtcaaaacaaatcatagaactga Alignment from GeneWise ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA cctaacaacctaataactcaataaacacaaaagaaaactcttcccgtcagACACACCCGACACAATCAGCATTTCTGTCCAGACTGGATCTACGCAGTTACTGTGCCTATCAGCTCATGTTGCCACAAGTGAAAACTATAGTGTGTTCCTCAAAGCATAGGGAgttagtggtgcagaatgatatgctgtagtcaaaacaaatcatagaactga #### Stambpl1_ID6902_9 --> 1 - 0 Original Alignment cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgctcaatattctaaattctcccagcACTGGTATCTTCAGGCTGACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgagtagaataggaatggaaagttattcaactatataaagaggaatcaa Alignment from CESAR cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgctcaatattctaaattctcccagcACTGGTATCTTCAGGCTGACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgagtagaataggaatggaaagttattcaactatataaagaggaatcaa Alignment from Spaln_aa2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgctcaatattctaaattctcccagCACTGGTATCTTCAGGCTGACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgagtagaataggaatggaaagttattcaactatataaagaggaatcaa Alignment from Spaln_nt2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgctcaatattctaaattctcccagCACTGGTATCTTCAGGCTGACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgagtagaataggaatggaaagttattcaactatataaagaggaatcaa Alignment from Pairagon CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgctcaatattctaaattctcccagCACTGGTATCTTCAGGCTGACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgagtagaataggaatggaaagttattcaactatataaagaggaatcaa Alignment from Exonerate_protein2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgctcaatattctaaattctcccagCACTGGTATCTTCAGGCTGACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgagtagaataggaatggaaagttattcaactatataaagaggaatcaa Alignment from Exonerate_coding2genome tgttcctgactggttccttctgatgtgctcaatattctaaattctcccagcactggtatcttcaggctgaccaacgctggcatgcttgaggtttctacttgtaaaaagaaaggcttccatcctcacaccaaggaccccaagctcttcagtgtgagtagaataggaatggaaagttattcaactatataaagaggaatcaa Alignment from GeneWise CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgactggttccttctgatgtgctcaatattctaaattctcccagCACTGGTATCTTCAGGCTGACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtgagtagaataggaatggaaagttattcaactatataaagaggaatcaa #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gtttctccattatatttccacaaatcgtcttcttgtctttcaacaaccagacAAGGGTTATACCCGACAGGCAGTTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATGCAT------CAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtgaggtagggatatcttgcatacagactgtgattatgtaattgaggggt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG ttttctccattatatttccacaaatcgtcttcttgtctttcaacaaccagacAAGGGTTATACCCGACAGGCAGTTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtgaggtagggatatcttgcatacagactgtgattatgtaattgaggggt Alignment from Spaln_aa2Genome ATCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAA gtttctccattatatttccacaaatcgtcttcttgtctttcaacaaccagACAAGGGTTATACCCGACAGGCAGTTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtgaggtagggatatcttgcatacagactgtgattatgtaattgaggggt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gtttctccattatatttccacaaatcgtcttcttgtctttcaacaaccagACAAGGGTTATACCCGACAGGCAGTTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATGCAT------CAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtgaggtagggatatcttgcatacagactgtgattatgtaattgaggggt Alignment from Pairagon ---------------------------------------------------CAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG GTTTCTCCATTATATTTCCACAAATCGTCTTCTTGTCTTTCAACAACCAGACAAGGGTTATACCCGACAGGCAGTTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATGCAT------CAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtgaggtagggatatcttgcatacagactgtgattatgtaattgaggggt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gtttctccattatatttccacaaatcgtcttcttgtctttcaacaaccagACAAGGGTTATACCCGACAGGCAGTTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtgaggtagggatatcttgcatacagactgtgattatgtaattgaggggt Alignment from Exonerate_coding2genome gtttctccattatatttccacaaatcgtcttcttgtctttcaacaaccagacaagggttatacccgacaggcagttgctttagaagccatgaaggactatacaaaagcaatgcatcaaaaggcattagacctagactcctgttgcaaggtgaggtagggatatcttgcatacagactgtgattatgtaattgaggggt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gtttctccattatatttccacaaatcgtcttcttgtctttcaacaaccagACAAGGGTTATACCCGACAGGCAGTTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtgaggtagggatatcttgcatacagactgtgattatgtaattgaggggt #### Stip1_ID1996_5 --> 1 - 0 Original Alignment gAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG ggccccaactgttaacccatgtctattatgtcaccttccctttgttgcagaAAACTACAGGATCCCAGAGTGATGACTACTCTGAGTGTACTCCTTGGCGTAGATCTGGGTAGCATGGGTGAAGAGGAAGAAGCTGCACCACCACCACCTCCACCCCCTCTGAAAAAAGAGCCTAAGCCAGAACCAATGGAAGAAGATCTACCAGAAAATGAAAAACAGgtgagttttttggctgaactgtagcaaacttgcaacttgagttctctagg Alignment from CESAR gAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG ggccccaactgttaacccatgtctattatgtcaccttccctttgttgcagaAAACTACAGGATCCCAGAGTGATGACTACTCTGAGTGTACTCCTTGGCGTAGATCTGGGTAGCATGGGTGAAGAGGAAGAAGCTGCACCACCACCACCTCCACCCCCTCTGAAAAAAGAGCCTAAGCCAGAACCAATGGAAGAAGATCTACCAGAAAATGAAAAACAGgtgagttttttggctgaactgtagcaaacttgcaacttgagttctctagg Alignment from Spaln_aa2Genome GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG ggccccaactgttaacccatgtctattatgtcaccttccctttgttgcagAAAACTACAGGATCCCAGAGTGATGACTACTCTGAGTGTACTCCTTGGCGTAGATCTGGGTAGCATGGGTGAAGAGGAAGAAGCTGCACCACCACCACCTCCACCCCCTCTGAAAAAAGAGCCTAAGCCAGAACCAATGGAAGAAGATCTACCAGAAAATGAAAAACAGgtgagttttttggctgaactgtagcaaacttgcaacttgagttctctagg Alignment from Spaln_nt2Genome GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG ggccccaactgttaacccatgtctattatgtcaccttccctttgttgcagAAAACTACAGGATCCCAGAGTGATGACTACTCTGAGTGTACTCCTTGGCGTAGATCTGGGTAGCATGGGTGAAGAGGAAGAAGCTGCACCACCACCACCTCCACCCCCTCTGAAAAAAGAGCCTAAGCCAGAACCAATGGAAGAAGATCTACCAGAAAATGAAAAACAGgtgagttttttggctgaactgtagcaaacttgcaacttgagttctctagg Alignment from Pairagon GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG ggccccaactgttaacccatgtctattatgtcaccttccctttgttgcagAAAACTACAGGATCCCAGAGTGATGACTACTCTGAGTGTACTCCTTGGCGTAGATCTGGGTAGCATGGGTGAAGAGGAAGAAGCTGCACCACCACCACCTCCACCCCCTCTGAAAAAAGAGCCTAAGCCAGAACCAATGGAAGAAGATCTACCAGAAAATGAAAAACAGgtgagttttttggctgaactgtagcaaacttgcaacttgagttctctagg Alignment from Exonerate_protein2genome GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG ggccccaactgttaacccatgtctattatgtcaccttccctttgttgcagAAAACTACAGGATCCCAGAGTGATGACTACTCTGAGTGTACTCCTTGGCGTAGATCTGGGTAGCATGGGTGAAGAGGAAGAAGCTGCACCACCACCACCTCCACCCCCTCTGAAAAAAGAGCCTAAGCCAGAACCAATGGAAGAAGATCTACCAGAAAATGAAAAACAGgtgagttttttggctgaactgtagcaaacttgcaacttgagttctctagg Alignment from Exonerate_coding2genome GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG ggccccaactgttaacccatgtctattatgtcaccttccctttgttgcagAAAACTACAGGATCCCAGAGTGATGACTACTCTGAGTGTACTCCTTGGCGTAGATCTGGGTAGCATGGGTGAAGAGGAAGAAGCTGCACCACCACCACCTCCACCCCCTCTGAAAAAAGAGCCTAAGCCAGAACCAATGGAAGAAGATCTACCAGAAAATGAAAAACAGgtgagttttttggctgaactgtagcaaacttgcaacttgagttctctagg Alignment from GeneWise GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG ggccccaactgttaacccatgtctattatgtcaccttccctttgttgcagAAAACTACAGGATCCCAGAGTGATGACTACTCTGAGTGTACTCCTTGGCGTAGATCTGGGTAGCATGGGTGAAGAGGAAGAAGCTGCACCACCACCACCTCCACCCCCTCTGAAAAAAGAGCCTAAGCCAGAACCAATGGAAGAAGATCTACCAGAAAATGAAAAACAGgtgagttttttggctgaactgtagcaaacttgcaacttgagttctctagg #### Stx3_ID3301_5 --> 2 - 0 Original Alignment gcATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggttcttctatggaatgaacagagagtagacctcgcccatctctccccaggcATGGAGAAGTACATTAATGAAGATGAGGTATGGGCATCCACAGACCTTCAAATATGTAGCTCTCAAgtaagccttggttgcttttaataatataacccattgtaggtaaagaatag Alignment from CESAR gcATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggttcttctatggaatgaacagagagtagacctcgcccatctctccccaggcATGGAGAAGTACATTAATGAAGATGAGGTATGGGCATCCACAGACCTTCAAATATGTAGCTCTCAAgtaagccttggttgcttttaataatataacccattgtaggtaaagaatag Alignment from Spaln_aa2Genome GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggttcttctatggaatgaacagagagtagacctcgcccatctctccccagGCATGGAGAAGTACATTAATGAAGATGAGGTATGGGCATCCACAGACCTTCAAATATGTAGCTCTCAAgtaagccttggttgcttttaataatataacccattgtaggtaaagaatag Alignment from Spaln_nt2Genome GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggttcttctatggaatgaacagagagtagacctcgcccatctctccccagGCATGGAGAAGTACATTAATGAAGATGAGGTATGGGCATCCACAGACCTTCAAATATGTAGCTCTCAAgtaagccttggttgcttttaataatataacccattgtaggtaaagaatag Alignment from Pairagon GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggttcttctatggaatgaacagagagtagacctcgcccatctctccccagGCATGGAGAAGTACATTAATGAAGATGAGGTATGGGCATCCACAGACCTTCAAATATGTAGCTCTCAAgtaagccttggttgcttttaataatataacccattgtaggtaaagaatag Alignment from Exonerate_protein2genome ggttcttctatggaatgaacagagagtagacctcgcccatctctccccaggcatggagaagtacattaatgaagatgaggtatgggcatccacagaccttcaaatatgtagctctcaagtaagccttggttgcttttaataatataacccattgtaggtaaagaatag Alignment from Exonerate_coding2genome GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggttcttctatggaatgaacagagagtagacctcgcccatctctccccagGCATGGAGAAGTACATTAATGAAGATGAGGTATGGGCATCCACAGACCTTCAAATATGTAGCTCTCAAgtaagccttggttgcttttaataatataacccattgtaggtaaagaatag Alignment from GeneWise GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggttcttctatggaatgaacagagagtagacctcgcccatctctccccagGCATGGAGAAGTACATTAATGAAGATGAGGTATGGGCATCCACAGACCTTCAAATATGTAGCTCTCAAgtaagccttggttgcttttaataatataacccattgtaggtaaagaatag #### Stx3_ID3303_3 --> 0 - 1 Original Alignment ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAa cttttgttttatctagtgcagtgtataatcccatccctaccaccctccagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTTGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCAGCACCAATCCCAGAGCCAagtaacagcctcactaaaccattggatgcatttctccactggcaaacatta Alignment from CESAR ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAa cttttgttttatctagtgcagtgtataatcccatccctaccaccctccagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTTGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCAGCACCAATCCCAGAGCCAagtaacagcctcactaaaccattggatgcatttctccactggcaaacatta Alignment from Spaln_aa2Genome ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA cttttgttttatctagtgcagtgtataatcccatccctaccaccctccagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTTGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCAGCACCAATCCCAGAGCCAAgtaacagcctcactaaaccattggatgcatttctccactggcaaacatta Alignment from Spaln_nt2Genome ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA cttttgttttatctagtgcagtgtataatcccatccctaccaccctccagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTTGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCAGCACCAATCCCAGAGCCAAgtaacagcctcactaaaccattggatgcatttctccactggcaaacatta Alignment from Pairagon ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA cttttgttttatctagtgcagtgtataatcccatccctaccaccctccagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTTGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCAGCACCAATCCCAGAGCCAAgtaacagcctcactaaaccattggatgcatttctccactggcaaacatta Alignment from Exonerate_protein2genome ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA cttttgttttatctagtgcagtgtataatcccatccctaccaccctccagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTTGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCAGCACCAATCCCAGAGCCAAgtaacagcctcactaaaccattggatgcatttctccactggcaaacatta Alignment from Exonerate_coding2genome GAGATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA cttttgttttatctagtgcagtgtataatcccatccctaccaccctcCAGATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTTGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCAGCACCAATCCCAGAGCCAAgtaacagcctcactaaaccattggatgcatttctccactggcaaacatta Alignment from GeneWise ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA cttttgttttatctagtgcagtgtataatcccatccctaccaccctccagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTTGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCAGCACCAATCCCAGAGCCAAgtaacagcctcactaaaccattggatgcatttctccactggcaaacatta #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agatgactgaccgtataaacatgtattgtactgcattccctaccccacagAATGGAATCCCAACAACCAAA---CCTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTcggtgagttgtaactgtcttaatgggctgactttttgtaatatgtagatatg Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agatgactgaccgtataaacatgtattgtactgcattccctaccccacagAATGGAATCCCAACAACCAAACCT---CTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTcggtgagttgtaactgtcttaatgggctgactttttgtaatatgtagatatg Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agatgactgaccgtataaacatgtattgtactgcattccctaccccacagAATGGAATCCCAACAACCAAACCT---CTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTCGgtgagttgtaactgtcttaatgggctgactttttgtaatatgtagatatg Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agatgactgaccgtataaacatgtattgtactgcattccctaccccacagAATGGAATCCCAACAACCAAAC---CTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTCGgtgagttgtaactgtcttaatgggctgactttttgtaatatgtagatatg Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agatgactgaccgtataaacatgtattgtactgcattccctaccccacagAATGGAATCCCAACAACCAAAC---CTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTCGgtgagttgtaactgtcttaatgggctgactttttgtaatatgtagatatg Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agatgactgaccgtataaacatgtattgtactgcattccctaccccacagAATGGAATCCCAACAACCAAACCT---CTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTCGgtgagttgtaactgtcttaatgggctgactttttgtaatatgtagatatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agatgactgaccgtataaacatgtattgtactgcattccctaccccacagAATGGAATCCCAACAACCAAACCT---CTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTCGgtgagttgtaactgtcttaatgggctgactttttgtaatatgtagatatg #### Stx5a_ID2332_4 --> 2 - 0 Original Alignment tgGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG gagctttagttcctactccccacctcaaagtcacagtgtgcttctttcagtgTCAAATCGGAAGTCGCTCTTTGATGATAAAGCAGTAGAGATTGAGGAGCTAACCTATATCATCAAACAGgtaagttattgggcattctgacacaattattactggggcatggggtagtt Alignment from CESAR tgGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG gagctttagttcctactccccacctcaaagtcacagtgtgcttctttcagtgTCAAATCGGAAGTCGCTCTTTGATGATAAAGCAGTAGAGATTGAGGAGCTAACCTATATCATCAAACAGgtaagttattgggcattctgacacaattattactggggcatggggtagtt Alignment from Spaln_aa2Genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG gagctttagttcctactccccacctcaaagtcacagtgtgcttctttcagTGTCAAATCGGAAGTCGCTCTTTGATGATAAAGCAGTAGAGATTGAGGAGCTAACCTATATCATCAAACAGgtaagttattgggcattctgacacaattattactggggcatggggtagtt Alignment from Spaln_nt2Genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG gagctttagttcctactccccacctcaaagtcacagtgtgcttctttcagTGTCAAATCGGAAGTCGCTCTTTGATGATAAAGCAGTAGAGATTGAGGAGCTAACCTATATCATCAAACAGgtaagttattgggcattctgacacaattattactggggcatggggtagtt Alignment from Pairagon TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG gagctttagttcctactccccacctcaaagtcacagtgtgcttctttcagTGTCAAATCGGAAGTCGCTCTTTGATGATAAAGCAGTAGAGATTGAGGAGCTAACCTATATCATCAAACAGgtaagttattgggcattctgacacaattattactggggcatggggtagtt Alignment from Exonerate_protein2genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG gagctttagttcctactccccacctcaaagtcacagtgtgcttctttcagTGTCAAATCGGAAGTCGCTCTTTGATGATAAAGCAGTAGAGATTGAGGAGCTAACCTATATCATCAAACAGgtaagttattgggcattctgacacaattattactggggcatggggtagtt Alignment from Exonerate_coding2genome AAGCTGGAGAAGCTAACAATCTTGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG gagctttagttcctactccccacctcaaAGTCACAGTGTGCTTCTTTCAGTGTCAAATCGGAAGTCGCTCTTTGATGATAAAGCAGTAGAGATTGAGGAGCTAACCTATATCATCAAACAGgtaagttattgggcattctgacacaattattactggggcatggggtagtt Alignment from GeneWise TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG gagctttagttcctactccccacctcaaagtcacagtgtgcttctttcagTGTCAAATCGGAAGTCGCTCTTTGATGATAAAGCAGTAGAGATTGAGGAGCTAACCTATATCATCAAACAGgtaagttattgggcattctgacacaattattactggggcatggggtagtt #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCGA---GCCCAGCTA---TGGGCCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTggtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from CESAR AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCGA---GCCCAGCTA---TGGGCCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTggtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCGAGCCCAG------CTATGGGCCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTGgtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAA---TCGAGCCCAGCTAT---GGGCCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTGgtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from Pairagon AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCA----------GGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCG----------------AGCCCAGCTATGGGCCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTGgtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCGAGCCCAGCTATGG------GCCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTGgtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from Exonerate_coding2genome ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagaatttaaaacagcagaggaatcgagcccagctatgggcccctgtgtctgcctttccattagcacccaataaccttggtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgtgcaaatgtctacagagccttggaaattctttgttttttttctagAATTTAAAACAGCAGAGGAATCGAGCCCAGCTATGG------GCCCCTGTGTCTGCCTTTCCATTAGCACCCAATAACCTTGgtaagattaccttatttagtatagtgggtctgacctgaactgctccaaaa #### Sufu_ID9908_9 --> 1 - 2 Original Alignment gAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAag gataatgcactaaataacttccataatatgtttgtttgtttgtttttaaggAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACAGCCATAATCCCTCATGAGCTTCTCCGCACACAGCCATTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCCGCAGCCCTTATGTCTCTCTGTCTAaggtattgtagcactactgatgaacacagcagtttcccccaagcacagcctg Alignment from CESAR gAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAag gataatgcactaaataacttccataatatgtttgtttgtttgtttttaaggAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACAGCCATAATCCCTCATGAGCTTCTCCGCACACAGCCATTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCCGCAGCCCTTATGTCTCTCTGTCTAaggtattgtagcactactgatgaacacagcagtttcccccaagcacagcctg Alignment from Spaln_aa2Genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gataatgcactaaataacttccataatatgtttgtttgtttgtttttaagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACAGCCATAATCCCTCATGAGCTTCTCCGCACACAGCCATTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCCGCAGCCCTTATGTCTCTCTGTCTAAGgtattgtagcactactgatgaacacagcagtttcccccaagcacagcctg Alignment from Spaln_nt2Genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gataatgcactaaataacttccataatatgtttgtttgtttgtttttaagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACAGCCATAATCCCTCATGAGCTTCTCCGCACACAGCCATTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCCGCAGCCCTTATGTCTCTCTGTCTAAGgtattgtagcactactgatgaacacagcagtttcccccaagcacagcctg Alignment from Pairagon GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gataatgcactaaataacttccataatatgtttgtttgtttgtttttaagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACAGCCATAATCCCTCATGAGCTTCTCCGCACACAGCCATTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCCGCAGCCCTTATGTCTCTCTGTCTAAGgtattgtagcactactgatgaacacagcagtttcccccaagcacagcctg Alignment from Exonerate_protein2genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gataatgcactaaataacttccataatatgtttgtttgtttgtttttaagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACAGCCATAATCCCTCATGAGCTTCTCCGCACACAGCCATTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCCGCAGCCCTTATGTCTCTCTGTCTAAGgtattgtagcactactgatgaacacagcagtttcccccaagcacagcctg Alignment from Exonerate_coding2genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gataatgcactaaataacttccataatatgtttgtttgtttgtttttaagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACAGCCATAATCCCTCATGAGCTTCTCCGCACACAGCCATTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCCGCAGCCCTTATGTCTCTCTGTCTAAGgtattgtagcactactgatgaacacagcagtttcccccaagcacagcctg Alignment from GeneWise GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gataatgcactaaataacttccataatatgtttgtttgtttgtttttaagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACAGCCATAATCCCTCATGAGCTTCTCCGCACACAGCCATTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCCGCAGCCCTTATGTCTCTCTGTCTAAGgtattgtagcactactgatgaacacagcagtttcccccaagcacagcctg #### Suv420h1_ID141_3 --> 1 - 2 Original Alignment cGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGag gaagggcactgatccacagaagtttttgtgacacttctcctgtgttccagtGCCTTTCCTTCAAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGaggtaataaagcttttcatttaagcttacaaaattttggctcaatgaaatgt Alignment from CESAR cGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGag gaagggcactgatccacagaagtttttgtgacacttctcctgtgttccagtGCCTTTCCTTCAAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGaggtaataaagcttttcatttaagcttacaaaattttggctcaatgaaatgt Alignment from Spaln_aa2Genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG gaagggcactgatccacagaagtttttgtgacacttctcctgtgttccagTGCCTTTCCTTCAAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaataaagcttttcatttaagcttacaaaattttggctcaatgaaatgt Alignment from Spaln_nt2Genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG gaagggcactgatccacagaagtttttgtgacacttctcctgtgttccagTGCCTTTCCTTCAAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaataaagcttttcatttaagcttacaaaattttggctcaatgaaatgt Alignment from Pairagon CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG gaagggcactgatccacagaagtttttgtgacacttctcctgtgttccagTGCCTTTCCTTCAAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaataaagcttttcatttaagcttacaaaattttggctcaatgaaatgt Alignment from Exonerate_protein2genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG gaagggcactgatccacagaagtttttgtgacacttctcctgtgttccagTGCCTTTCCTTCAAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaataaagcttttcatttaagcttacaaaattttggctcaatgaaatgt Alignment from Exonerate_coding2genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG gaagggcactgatccacagaagtttttgtgacacttctcctgtgttccagTGCCTTTCCTTCAAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaataaagcttttcatttaagcttacaaaattttggctcaatgaaatgt Alignment from GeneWise CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG gaagggcactgatccacagaagtttttgtgacacttctcctgtgttccagTGCCTTTCCTTCAAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaataaagcttttcatttaagcttacaaaattttggctcaatgaaatgt #### Suv420h1_ID144_6 --> 1 - 1 Original Alignment gAAACGAAATGACAAAATAGAATTACTGGTGGGTTGTATTGCCGAACTTTCAGAAATTGAGGAGAACATGCTACTTAGACACGGAGAAAACGACTTCAGTGTCATGTATTCCACAAGGAAAAATTGTGCTCAACTCTGGCTCGGTCCTGCTGCATTTATAAATCATg aggagtctgagacctccttttaatctgtttaatctttttcctccttccaggAAACGAAATGACAAAATTGAATTACTGGTAGGTTGTAATGCCAAACTCTCAGAAATTGAGGACAACATGCTACTTAGACATGGGCAAAATGACTTCAGTGTTATGTATTCCACCAGGAAGAACTGTGCCCAACTCTGGCTCGGTCCAGCTGCATTCATAAATCATggtcagagagtcttgttgtggacaagcaacacagcacctgatttctgtgga Alignment from CESAR gAAACGAAATGACAAAATAGAATTACTGGTGGGTTGTATTGCCGAACTTTCAGAAATTGAGGAGAACATGCTACTTAGACACGGAGAAAACGACTTCAGTGTCATGTATTCCACAAGGAAAAATTGTGCTCAACTCTGGCTCGGTCCTGCTGCATTTATAAATCATg aggagtctgagacctccttttaatctgtttaatctttttcctccttccaggAAACGAAATGACAAAATTGAATTACTGGTAGGTTGTAATGCCAAACTCTCAGAAATTGAGGACAACATGCTACTTAGACATGGGCAAAATGACTTCAGTGTTATGTATTCCACCAGGAAGAACTGTGCCCAACTCTGGCTCGGTCCAGCTGCATTCATAAATCATggtcagagagtcttgttgtggacaagcaacacagcacctgatttctgtgga Alignment from Spaln_aa2Genome GAAACGAAATGACAAAATAGAATTACTGGTGGGTTGTATTGCCGAACTTTCAGAAATTGAGGAGAACATGCTACTTAGACACGGAGAAAACGACTTCAGTGTCATGTATTCCACAAGGAAAAATTGTGCTCAACTCTGGCTCGGTCCTGCTGCATTTATAAATCATG aggagtctgagacctccttttaatctgtttaatctttttcctccttccagGAAACGAAATGACAAAATTGAATTACTGGTAGGTTGTAATGCCAAACTCTCAGAAATTGAGGACAACATGCTACTTAGACATGGGCAAAATGACTTCAGTGTTATGTATTCCACCAGGAAGAACTGTGCCCAACTCTGGCTCGGTCCAGCTGCATTCATAAATCATGgtcagagagtcttgttgtggacaagcaacacagcacctgatttctgtgga Alignment from Spaln_nt2Genome GAAACGAAATGACAAAATAGAATTACTGGTGGGTTGTATTGCCGAACTTTCAGAAATTGAGGAGAACATGCTACTTAGACACGGAGAAAACGACTTCAGTGTCATGTATTCCACAAGGAAAAATTGTGCTCAACTCTGGCTCGGTCCTGCTGCATTTATAAATCATG aggagtctgagacctccttttaatctgtttaatctttttcctccttccagGAAACGAAATGACAAAATTGAATTACTGGTAGGTTGTAATGCCAAACTCTCAGAAATTGAGGACAACATGCTACTTAGACATGGGCAAAATGACTTCAGTGTTATGTATTCCACCAGGAAGAACTGTGCCCAACTCTGGCTCGGTCCAGCTGCATTCATAAATCATGgtcagagagtcttgttgtggacaagcaacacagcacctgatttctgtgga Alignment from Pairagon GAAACGAAATGACAAAATAGAATTACTGGTGGGTTGTATTGCCGAACTTTCAGAAATTGAGGAGAACATGCTACTTAGACACGGAGAAAACGACTTCAGTGTCATGTATTCCACAAGGAAAAATTGTGCTCAACTCTGGCTCGGTCCTGCTGCATTTATAAATCATG aggagtctgagacctccttttaatctgtttaatctttttcctccttccagGAAACGAAATGACAAAATTGAATTACTGGTAGGTTGTAATGCCAAACTCTCAGAAATTGAGGACAACATGCTACTTAGACATGGGCAAAATGACTTCAGTGTTATGTATTCCACCAGGAAGAACTGTGCCCAACTCTGGCTCGGTCCAGCTGCATTCATAAATCATGgtcagagagtcttgttgtggacaagcaacacagcacctgatttctgtgga Alignment from Exonerate_protein2genome GAAACGAAATGACAAAATAGAATTACTGGTGGGTTGTATTGCCGAACTTTCAGAAATTGAGGAGAACATGCTACTTAGACACGGAGAAAACGACTTCAGTGTCATGTATTCCACAAGGAAAAATTGTGCTCAACTCTGGCTCGGTCCTGCTGCATTTATAAATCATG aggagtctgagacctccttttaatctgtttaatctttttcctccttccagGAAACGAAATGACAAAATTGAATTACTGGTAGGTTGTAATGCCAAACTCTCAGAAATTGAGGACAACATGCTACTTAGACATGGGCAAAATGACTTCAGTGTTATGTATTCCACCAGGAAGAACTGTGCCCAACTCTGGCTCGGTCCAGCTGCATTCATAAATCATGgtcagagagtcttgttgtggacaagcaacacagcacctgatttctgtgga Alignment from Exonerate_coding2genome GAAACGAAATGACAAAATAGAATTACTGGTGGGTTGTATTGCCGAACTTTCAGAAATTGAGGAGAACATGCTACTTAGACACGGAGAAAACGACTTCAGTGTCATGTATTCCACAAGGAAAAATTGTGCTCAACTCTGGCTCGGTCCTGCTGCATTTATAAATCATGATTGCAGACCTAACTGTAAG aggagtctgagacctccttttaatctgtttaatctttttcctccttccagGAAACGAAATGACAAAATTGAATTACTGGTAGGTTGTAATGCCAAACTCTCAGAAATTGAGGACAACATGCTACTTAGACATGGGCAAAATGACTTCAGTGTTATGTATTCCACCAGGAAGAACTGTGCCCAACTCTGGCTCGGTCCAGCTGCATTCATAAATCATGGTCAGAGAGTCTTGTTGTGGacaagcaacacagcacctgatttctgtgga Alignment from GeneWise GTGGAAACGAAATGACAAAATAGAATTACTGGTGGGTTGTATTGCCGAACTTTCAGAAATTGAGGAGAACATGCTACTTAGACACGGAGAAAACGACTTCAGTGTCATGTATTCCACAAGGAAAAATTGTGCTCAACTCTGGCTCGGTCCTGCTGCATTTATAAATCAT- aggagtctgagacctccttttaatctgtttaatctttttcctccttccagG---AAACGAAATGACAAAATTGAATTACTGGTAGGTTGTAATGCCAAACTCTCAGAAATTGAGGACAACATGCTACTTAGACATGGGCAAAATGACTTCAGTGTTATGTATTCCACCAGGAAGAACTGTGCCCAACTCTGGCTCGGTCCAGCTGCATTCATAAATCATGgtcagagagtcttgttgtggacaagcaacacagcacctgatttctgtgga #### Syt12_ID536_4 --> 0 - 0 Original Alignment ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTT---------GGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG tgacatggagatttagctgagaaacactggctcccgaatcttctttccagGTTCATAGAAATGCTTAT------CTCTTTGATGAGAGATTGTCTGTCACCCTTGACCCCAATATCCTGGAAGGAAAGAGTCTTAGATTGTCTGTATTTGGTATTGATGGTATTGATGAGGAAGAA---CATGTAAGCACTGGTGTGGTGAAGTTAAAACTGTCAATTTTAGATCTTCCACTACAGCCA------------TTATATTTACAGGAGCAAAATAATgtaagctcattcccactagtcctcttgagacaagaatggcaccatcaaaa Alignment from CESAR ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGAC------GAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG tgacatggagatttagctgagaaacactggctcccgaatcttctttccagGTTCATAGAAATGCTTAT------CTCTTTGATGAGAGATTGTCTGTCACCCTTGACCCCAATATCCTGGAAGGAAAGAGTCTTAGATTGTCTGTATTTGGTATTGATGGTATTGATGAGGAAGAACATGTAAGCACTGGTGTGGTGAAGTTAAAACTGTCAATTTTAGATCTTCCACTACAGCCA------------TTATATTTACAGGAGCAAAATAATgtaagctcattcccactagtcctcttgagacaagaatggcaccatcaaaa Alignment from Spaln_aa2Genome ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGAC------GAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG tgacatggagatttagctgagaaacactggctcccgaatcttctttccagGTTCATAGAAATGCTTAT------CTCTTTGATGAGAGATTGTCTGTCACCCTTGACCCCAATATCCTGGAAGGAAAGAGTCTTAGATTGTCTGTATTTGGTATTGATGGTATTGATGAGGAAGAACATGTAAGCACTGGTGTGGTGAAGTTAAAACTGTCAATTTTAGATCTTCCACTACAGCCA------------TTATATTTACAGGAGCAAAATAATgtaagctcattcccactagtcctcttgagacaagaatggcaccatcaaaa Alignment from Spaln_nt2Genome ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGACGAGGATGA-GCGGAA-----TGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG tgacatggagatttagctgagaaacactggctcccgaatcttctttccagGTTCATAGAAATGCTTAT------CTCTTTGATGAGAGATTGTCTGTCACCCTTGACCCCAATATCCTGGAAGGAAAGAGTCTTAGATTGTCTGTATTTGGTATTGATGGTATTGATGAGGAAGAACATGTAAGCACTGGTGTGGTGAAGTTAAAACTGTCAATTTTAGATCTTCCACTACAGCCAT------------TATATTTACAGGAGCAAAATAATgtaagctcattcccactagtcctcttgagacaagaatggcaccatcaaaa Alignment from Pairagon ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTT---------TGGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG tgacatggagatttagctgagaaacactggctcccgaatcttctttccagGTTCATAGAAATGCTTAT------CTCTTTGATGAGAGATTGTCTGTCACCCTTGACCCCAATATCCTGGAAGGAAAGAGTCTTAGATTGTCTGTATTTGGTATTGATGGTATTGATGAGGAAGAAC---ATGTAAGCACTGGTGTGGTGAAGTTAAAACTGTCAATTTTAGATCTTCCACTACAGCCAT------------TATATTTACAGGAGCAAAATAATgtaagctcattcccactagtcctcttgagacaagaatggcaccatcaaaa Alignment from Exonerate_protein2genome ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGAC------GAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG tgacatggagatttagctgagaaacactggctcccgaatcttctttccagGTTCATAGAAATGCTTAT------CTCTTTGATGAGAGATTGTCTGTCACCCTTGACCCCAATATCCTGGAAGGAAAGAGTCTTAGATTGTCTGTATTTGGTATTGATGGTATTGATGAGGAAGAACATGTAAGCACTGGTGTGGTGAAGTTAAAACTGTCAATTTTAGATCTTCCACTACAGCCA------------TTATATTTACAGGAGCAAAATAATgtaagctcattcccactagtcctcttgagacaagaatggcaccatcaaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGAC------GAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG tgacatggagatttagctgagaaacactggctcccgaatcttctttccagGTTCATAGAAATGCTTAT------CTCTTTGATGAGAGATTGTCTGTCACCCTTGACCCCAATATCCTGGAAGGAAAGAGTCTTAGATTGTCTGTATTTGGTATTGATGGTATTGATGAGGAAGAACATGTAAGCACTGGTGTGGTGAAGTTAAAACTGTCAATTTTAGATCTTCCACTACAGCCA------------TTATATTTACAGGAGCAAAATAATgtaagctcattcccactagtcctcttgagacaagaatggcaccatcaaaa #### Syt7_ID2805_2 --> 2 - 0 Original Alignment ggGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG tggatactggagcaacttgtaaagatgtaaccactgccttctcgtttcagggGCACCTACTCGTGATGTCTTACTAGTCTCTGCAGTCATCACTGTCAGCCTTAGCATTACTATCGTCCTCTGTGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtaaatccccatcagctctgaccacaggccatgacagatgagcagctgta Alignment from CESAR ggGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG tggatactggagcaacttgtaaagatgtaaccactgccttctcgtttcagggGCACCTACTCGTGATGTCTTACTAGTCTCTGCAGTCATCACTGTCAGCCTTAGCATTACTATCGTCCTCTGTGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtaaatccccatcagctctgaccacaggccatgacagatgagcagctgta Alignment from Spaln_aa2Genome GGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG tggatactggagcaacttgtaaagatgtaaccactgccttctcgtttcagGGGCACCTACTCGTGATGTCTTACTAGTCTCTGCAGTCATCACTGTCAGCCTTAGCATTACTATCGTCCTCTGTGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtaaatccccatcagctctgaccacaggccatgacagatgagcagctgta Alignment from Spaln_nt2Genome GGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG tggatactggagcaacttgtaaagatgtaaccactgccttctcgtttcagGGGCACCTACTCGTGATGTCTTACTAGTCTCTGCAGTCATCACTGTCAGCCTTAGCATTACTATCGTCCTCTGTGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtaaatccccatcagctctgaccacaggccatgacagatgagcagctgta Alignment from Pairagon CAGGGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG tggatactggagcaacttgtaaagatgtaaccactgccttctcgtttCAGGGGCACCTACTCGTGATGTCTTACTAGTCTCTGCAGTCATCACTGTCAGCCTTAGCATTACTATCGTCCTCTGTGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtaaatccccatcagctctgaccacaggccatgacagatgagcagctgta Alignment from Exonerate_protein2genome GGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG tggatactggagcaacttgtaaagatgtaaccactgccttctcgtttcagGGGCACCTACTCGTGATGTCTTACTAGTCTCTGCAGTCATCACTGTCAGCCTTAGCATTACTATCGTCCTCTGTGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtaaatccccatcagctctgaccacaggccatgacagatgagcagctgta Alignment from Exonerate_coding2genome tggatactggagcaacttgtaaagatgtaaccactgccttctcgtttcaggggcacctactcgtgatgtcttactagtctctgcagtcatcactgtcagccttagcattactatcgtcctctgtggcctgtgccactggtgtcagcgcaaactggtaaatccccatcagctctgaccacaggccatgacagatgagcagctgta Alignment from GeneWise GGGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG tggatactggagcaacttgtaaagatgtaaccactgccttctcgtttcaGGGGCACCTACTCGTGATGTCTTACTAGTCTCTGCAGTCATCACTGTCAGCCTTAGCATTACTATCGTCCTCTGTGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtaaatccccatcagctctgaccacaggccatgacagatgagcagctgta #### Syt7_ID2816_4 --> 1 - 2 Original Alignment tTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCct tcaagggcagaggaatacacagttgagatcatcccccgttgtgccagcagcTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACATTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCCCCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCCGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATCCGAAACCGAGGCTTGGATATGAAATCCTTCctgtgacatacattcactcagcccttgccatgctcgctctgatactttacca Alignment from CESAR tTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCct tcaagggcagaggaatacacagttgagatcatcccccgttgtgccagcagcTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACATTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCCCCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCCGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATCCGAAACCGAGGCTTGGATATGAAATCCTTCctgtgacatacattcactcagcccttgccatgctcgctctgatactttacca Alignment from Spaln_aa2Genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT tcaagggcagaggaatacacagttgagatcatcccccgttgtgccagcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACATTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCCCCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCCGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATCCGAAACCGAGGCTTGGATATGAAATCCTTCCTgtgacatacattcactcagcccttgccatgctcgctctgatactttacca Alignment from Spaln_nt2Genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT tcaagggcagaggaatacacagttgagatcatcccccgttgtgccagcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACATTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCCCCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCCGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATCCGAAACCGAGGCTTGGATATGAAATCCTTCCTgtgacatacattcactcagcccttgccatgctcgctctgatactttacca Alignment from Pairagon TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT tcaagggcagaggaatacacagttgagatcatcccccgttgtgccagcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACATTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCCCCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCCGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATCCGAAACCGAGGCTTGGATATGAAATCCTTCCTgtgacatacattcactcagcccttgccatgctcgctctgatactttacca Alignment from Exonerate_protein2genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT tcaagggcagaggaatacacagttgagatcatcccccgttgtgccagcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACATTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCCCCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCCGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATCCGAAACCGAGGCTTGGATATGAAATCCTTCCTgtgacatacattcactcagcccttgccatgctcgctctgatactttacca Alignment from Exonerate_coding2genome tcaagggcagaggaatacacagttgagatcatcccccgttgtgccagcagctttgaggactccaccctgtccacggccactacacttgagtccatcccaagctctgcgggagagccaaaatgccagcgaccacgcacattgatgtggcagcagagcctgcaggagccactgagccagaatcagcaggggcggcagcccagtcagcccaccactagtcagagtctgggacaactgcagacccatgcagcctcagccccaggatccaaccctagagcctatggctggggtcaggctcggcaagagacctccgctggctctaagtatcatgcagctgggggccgcagccgttccaacccaggcagctgggaccatgtggtggggcagatccgaaaccgaggcttggatatgaaatccttcctgtgacatacattcactcagcccttgccatgctcgctctgatactttacca Alignment from GeneWise TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT tcaagggcagaggaatacacagttgagatcatcccccgttgtgccagcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACATTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCCCCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCCGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATCCGAAACCGAGGCTTGGATATGAAATCCTTCCTgtgacatacattcactcagcccttgccatgctcgctctgatactttacca #### Syt7_ID2818_5 --> 1 - 2 Original Alignment gGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGag ctgtacataccaaacttgccaaaaaccaatcccgttaccttctcctgcaggGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGTTCAGGGAGACAAGaggtagtgtccaatattagccaaagggagaggaggtcagtcatagtagtaga Alignment from CESAR gGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGag ctgtacataccaaacttgccaaaaaccaatcccgttaccttctcctgcaggGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGTTCAGGGAGACAAGaggtagtgtccaatattagccaaagggagaggaggtcagtcatagtagtaga Alignment from Spaln_aa2Genome GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG ctgtacataccaaacttgccaaaaaccaatcccgttaccttctcctgcagGGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGTTCAGGGAGACAAGAGgtagtgtccaatattagccaaagggagaggaggtcagtcatagtagtaga Alignment from Spaln_nt2Genome GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG ctgtacataccaaacttgccaaaaaccaatcccgttaccttctcctgcagGGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGTTCAGGGAGACAAGAGgtagtgtccaatattagccaaagggagaggaggtcagtcatagtagtaga Alignment from Pairagon GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG ctgtacataccaaacttgccaaaaaccaatcccgttaccttctcctgcagGGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGTTCAGGGAGACAAGAGgtagtgtccaatattagccaaagggagaggaggtcagtcatagtagtaga Alignment from Exonerate_protein2genome GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG ctgtacataccaaacttgccaaaaaccaatcccgttaccttctcctgcagGGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGTTCAGGGAGACAAGAGgtagtgtccaatattagccaaagggagaggaggtcagtcatagtagtaga Alignment from Exonerate_coding2genome ctgtacataccaaacttgccaaaaaccaatcccgttaccttctcctgcagggagggtcgaatggtggagctattgcttgtattagggcttctggaacaggatgactttgcgaatatcccagacctgcaaaacccaggaacccagcagaaccaaaatgttcagggagacaagaggtagtgtccaatattagccaaagggagaggaggtcagtcatagtagtaga Alignment from GeneWise GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAGG-- ctgtacataccaaacttgccaaaaaccaatcccgttaccttctcctgcagGGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGTTCAGGGAGACAAGAGGTAgtgtccaatattagccaaagggagaggaggtcagtcatagtagtaga #### Syt7_ID2825_6 --> 1 - 0 Original Alignment gTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ggcttaaggccatcaactatgtggaagccgtttgtctttctgaaccacagaCCACCTGTAGGAGGAGAGGCTGTCAATACAGCGCCAGTCCCAGGCCAAACACCACATGATGAATCTGACTGTAGGACAGAGACCAGCTCCTCCGTATCAGACCTAGTGAATTCCCTCACCAGTGAGATACTCACAgtatgttccttagcaccatcatcagaaacaagaatacccaaaactttgct Alignment from CESAR gTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ggcttaaggccatcaactatgtggaagccgtttgtctttctgaaccacagaCCACCTGTAGGAGGAGAGGCTGTCAATACAGCGCCAGTCCCAGGCCAAACACCACATGATGAATCTGACTGTAGGACAGAGACCAGCTCCTCCGTATCAGACCTAGTGAATTCCCTCACCAGTGAGATACTCACAgtatgttccttagcaccatcatcagaaacaagaatacccaaaactttgct Alignment from Spaln_aa2Genome GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ggcttaaggccatcaactatgtggaagccgtttgtctttctgaaccacagACCACCTGTAGGAGGAGAGGCTGTCAATACAGCGCCAGTCCCAGGCCAAACACCACATGATGAATCTGACTGTAGGACAGAGACCAGCTCCTCCGTATCAGACCTAGTGAATTCCCTCACCAGTGAGATACTCACAgtatgttccttagcaccatcatcagaaacaagaatacccaaaactttgct Alignment from Spaln_nt2Genome GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ggcttaaggccatcaactatgtggaagccgtttgtctttctgaaccacagACCACCTGTAGGAGGAGAGGCTGTCAATACAGCGCCAGTCCCAGGCCAAACACCACATGATGAATCTGACTGTAGGACAGAGACCAGCTCCTCCGTATCAGACCTAGTGAATTCCCTCACCAGTGAGATACTCACAgtatgttccttagcaccatcatcagaaacaagaatacccaaaactttgct Alignment from Pairagon GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ggcttaaggccatcaactatgtggaagccgtttgtctttctgaaccacagACCACCTGTAGGAGGAGAGGCTGTCAATACAGCGCCAGTCCCAGGCCAAACACCACATGATGAATCTGACTGTAGGACAGAGACCAGCTCCTCCGTATCAGACCTAGTGAATTCCCTCACCAGTGAGATACTCACAgtatgttccttagcaccatcatcagaaacaagaatacccaaaactttgct Alignment from Exonerate_protein2genome GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ggcttaaggccatcaactatgtggaagccgtttgtctttctgaaccacagACCACCTGTAGGAGGAGAGGCTGTCAATACAGCGCCAGTCCCAGGCCAAACACCACATGATGAATCTGACTGTAGGACAGAGACCAGCTCCTCCGTATCAGACCTAGTGAATTCCCTCACCAGTGAGATACTCACAgtatgttccttagcaccatcatcagaaacaagaatacccaaaactttgct Alignment from Exonerate_coding2genome ggcttaaggccatcaactatgtggaagccgtttgtctttctgaaccacagaccacctgtaggaggagaggctgtcaatacagcgccagtcccaggccaaacaccacatgatgaatctgactgtaggacagagaccagctcctccgtatcagacctagtgaattccctcaccagtgagatactcacagtatgttccttagcaccatcatcagaaacaagaatacccaaaactttgct Alignment from GeneWise GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ggcttaaggccatcaactatgtggaagccgtttgtctttctgaaccacagACCACCTGTAGGAGGAGAGGCTGTCAATACAGCGCCAGTCCCAGGCCAAACACCACATGATGAATCTGACTGTAGGACAGAGACCAGCTCCTCCGTATCAGACCTAGTGAATTCCCTCACCAGTGAGATACTCACAgtatgttccttagcaccatcatcagaaacaagaatacccaaaactttgct #### Syvn1_ID1389_8 --> 1 - 2 Original Alignment gCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACAct ctaagaatcattagtcttacattccatcctagctggcttctgtcctgcaggCACTTAAAGAAAGCTGTGACAGACACCATCATGTCTCGCCGAGCCATTCGCAACATGAACACActgtaggcgcactgaatctgtctacacacatactttatagagaagtggctct Alignment from CESAR gCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACAct ctaagaatcattagtcttacattccatcctagctggcttctgtcctgcaggCACTTAAAGAAAGCTGTGACAGACACCATCATGTCTCGCCGAGCCATTCGCAACATGAACACActgtaggcgcactgaatctgtctacacacatactttatagagaagtggctct Alignment from Spaln_aa2Genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT ctaagaatcattagtcttacattccatcctagctggcttctgtcctgcagGCACTTAAAGAAAGCTGTGACAGACACCATCATGTCTCGCCGAGCCATTCGCAACATGAACACACTgtaggcgcactgaatctgtctacacacatactttatagagaagtggctct Alignment from Spaln_nt2Genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT ctaagaatcattagtcttacattccatcctagctggcttctgtcctgcagGCACTTAAAGAAAGCTGTGACAGACACCATCATGTCTCGCCGAGCCATTCGCAACATGAACACACTgtaggcgcactgaatctgtctacacacatactttatagagaagtggctct Alignment from Pairagon GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT ctaagaatcattagtcttacattccatcctagctggcttctgtcctgcagGCACTTAAAGAAAGCTGTGACAGACACCATCATGTCTCGCCGAGCCATTCGCAACATGAACACACTgtaggcgcactgaatctgtctacacacatactttatagagaagtggctct Alignment from Exonerate_protein2genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT ctaagaatcattagtcttacattccatcctagctggcttctgtcctgcagGCACTTAAAGAAAGCTGTGACAGACACCATCATGTCTCGCCGAGCCATTCGCAACATGAACACACTgtaggcgcactgaatctgtctacacacatactttatagagaagtggctct Alignment from Exonerate_coding2genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT ctaagaatcattagtcttacattccatcctagctggcttctgtcctgcagGCACTTAAAGAAAGCTGTGACAGACACCATCATGTCTCGCCGAGCCATTCGCAACATGAACACACTgtaggcgcactgaatctgtctacacacatactttatagagaagtggctct Alignment from GeneWise GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT ctaagaatcattagtcttacattccatcctagctggcttctgtcctgcagGCACTTAAAGAAAGCTGTGACAGACACCATCATGTCTCGCCGAGCCATTCGCAACATGAACACACTgtaggcgcactgaatctgtctacacacatactttatagagaagtggctct #### Taf5_ID10091_2 --> 2 - 2 Original Alignment ttGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGaa ttcatggtgcaatcgtataatacattgagctccctttcatgtctccctagtgGCAAGCATTGCTGTTGAAGACCAACCAGATGTTGGTGTAGTCTTGTCTTCATACAACCAACATGGAGACCCAATGATGCATGAGGAATGTTATAGTGGACTGAAGCACTTTATTGAATGCTCCCTAGACTGCCATCGGGCAGAGCTGTCTCAACTTTTCTATCCCCTGTTTGTGCATATGTATGTGGAGTTAGTATATATTCAACATGAAAATGATGCTAGAACATTGTTTGAGaagtactttaggttggctaccttggttgctttcgtgtacatggaagaactta Alignment from CESAR ttGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGaa ttcatggtgcaatcgtataatacattgagctccctttcatgtctccctagtgGCAAGCATTGCTGTTGAAGACCAACCAGATGTTGGTGTAGTCTTGTCTTCATACAACCAACATGGAGACCCAATGATGCATGAGGAATGTTATAGTGGACTGAAGCACTTTATTGAATGCTCCCTAGACTGCCATCGGGCAGAGCTGTCTCAACTTTTCTATCCCCTGTTTGTGCATATGTATGTGGAGTTAGTATATATTCAACATGAAAATGATGCTAGAACATTGTTTGAGaagtactttaggttggctaccttggttgctttcgtgtacatggaagaactta Alignment from Spaln_aa2Genome TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA ttcatggtgcaatcgtataatacattgagctccctttcatgtctccctagTGGCAAGCATTGCTGTTGAAGACCAACCAGATGTTGGTGTAGTCTTGTCTTCATACAACCAACATGGAGACCCAATGATGCATGAGGAATGTTATAGTGGACTGAAGCACTTTATTGAATGCTCCCTAGACTGCCATCGGGCAGAGCTGTCTCAACTTTTCTATCCCCTGTTTGTGCATATGTATGTGGAGTTAGTATATATTCAACATGAAAATGATGCTAGAACATTGTTTGAGAAgtactttaggttggctaccttggttgctttcgtgtacatggaagaactta Alignment from Spaln_nt2Genome TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA ttcatggtgcaatcgtataatacattgagctccctttcatgtctccctagTGGCAAGCATTGCTGTTGAAGACCAACCAGATGTTGGTGTAGTCTTGTCTTCATACAACCAACATGGAGACCCAATGATGCATGAGGAATGTTATAGTGGACTGAAGCACTTTATTGAATGCTCCCTAGACTGCCATCGGGCAGAGCTGTCTCAACTTTTCTATCCCCTGTTTGTGCATATGTATGTGGAGTTAGTATATATTCAACATGAAAATGATGCTAGAACATTGTTTGAGAAgtactttaggttggctaccttggttgctttcgtgtacatggaagaactta Alignment from Pairagon TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA ttcatggtgcaatcgtataatacattgagctccctttcatgtctccctagTGGCAAGCATTGCTGTTGAAGACCAACCAGATGTTGGTGTAGTCTTGTCTTCATACAACCAACATGGAGACCCAATGATGCATGAGGAATGTTATAGTGGACTGAAGCACTTTATTGAATGCTCCCTAGACTGCCATCGGGCAGAGCTGTCTCAACTTTTCTATCCCCTGTTTGTGCATATGTATGTGGAGTTAGTATATATTCAACATGAAAATGATGCTAGAACATTGTTTGAGAAgtactttaggttggctaccttggttgctttcgtgtacatggaagaactta Alignment from Exonerate_protein2genome TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA ttcatggtgcaatcgtataatacattgagctccctttcatgtctccctagTGGCAAGCATTGCTGTTGAAGACCAACCAGATGTTGGTGTAGTCTTGTCTTCATACAACCAACATGGAGACCCAATGATGCATGAGGAATGTTATAGTGGACTGAAGCACTTTATTGAATGCTCCCTAGACTGCCATCGGGCAGAGCTGTCTCAACTTTTCTATCCCCTGTTTGTGCATATGTATGTGGAGTTAGTATATATTCAACATGAAAATGATGCTAGAACATTGTTTGAGAAgtactttaggttggctaccttggttgctttcgtgtacatggaagaactta Alignment from Exonerate_coding2genome TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA ttcatggtgcaatcgtataatacattgagctccctttcatgtctccctagTGGCAAGCATTGCTGTTGAAGACCAACCAGATGTTGGTGTAGTCTTGTCTTCATACAACCAACATGGAGACCCAATGATGCATGAGGAATGTTATAGTGGACTGAAGCACTTTATTGAATGCTCCCTAGACTGCCATCGGGCAGAGCTGTCTCAACTTTTCTATCCCCTGTTTGTGCATATGTATGTGGAGTTAGTATATATTCAACATGAAAATGATGCTAGAACATTGTTTGAGAAgtactttaggttggctaccttggttgctttcgtgtacatggaagaactta Alignment from GeneWise TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA ttcatggtgcaatcgtataatacattgagctccctttcatgtctccctagTGGCAAGCATTGCTGTTGAAGACCAACCAGATGTTGGTGTAGTCTTGTCTTCATACAACCAACATGGAGACCCAATGATGCATGAGGAATGTTATAGTGGACTGAAGCACTTTATTGAATGCTCCCTAGACTGCCATCGGGCAGAGCTGTCTCAACTTTTCTATCCCCTGTTTGTGCATATGTATGTGGAGTTAGTATATATTCAACATGAAAATGATGCTAGAACATTGTTTGAGAAgtactttaggttggctaccttggttgctttcgtgtacatggaagaactta #### Taf5_ID10098_6 --> 0 - 1 Original Alignment GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAg accccctgaccctaaggcattttctgggagtaggtgctgctctcccccagGGCCTTATGGCAGTGCATGTCACTGATGACTATAGCCTGATTGCTAGAGGTTTTGCCGAATCAACTGTAAGAGTATGGTCTGTAACTCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAggtatttgcattggagttaccagatgggtttaaaaagacacaatgggttaa Alignment from CESAR GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAg accccctgaccctaaggcattttctgggagtaggtgctgctctcccccagGGCCTTATGGCAGTGCATGTCACTGATGACTATAGCCTGATTGCTAGAGGTTTTGCCGAATCAACTGTAAGAGTATGGTCTGTAACTCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAggtatttgcattggagttaccagatgggtttaaaaagacacaatgggttaa Alignment from Spaln_aa2Genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaaggcattttctgggagtaggtgctgctctcccccagGGCCTTATGGCAGTGCATGTCACTGATGACTATAGCCTGATTGCTAGAGGTTTTGCCGAATCAACTGTAAGAGTATGGTCTGTAACTCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtatttgcattggagttaccagatgggtttaaaaagacacaatgggttaa Alignment from Spaln_nt2Genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaaggcattttctgggagtaggtgctgctctcccccagGGCCTTATGGCAGTGCATGTCACTGATGACTATAGCCTGATTGCTAGAGGTTTTGCCGAATCAACTGTAAGAGTATGGTCTGTAACTCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtatttgcattggagttaccagatgggtttaaaaagacacaatgggttaa Alignment from Pairagon GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaaggcattttctgggagtaggtgctgctctcccccagGGCCTTATGGCAGTGCATGTCACTGATGACTATAGCCTGATTGCTAGAGGTTTTGCCGAATCAACTGTAAGAGTATGGTCTGTAACTCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtatttgcattggagttaccagatgggtttaaaaagacacaatgggttaa Alignment from Exonerate_protein2genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaaggcattttctgggagtaggtgctgctctcccccagGGCCTTATGGCAGTGCATGTCACTGATGACTATAGCCTGATTGCTAGAGGTTTTGCCGAATCAACTGTAAGAGTATGGTCTGTAACTCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtatttgcattggagttaccagatgggtttaaaaagacacaatgggttaa Alignment from Exonerate_coding2genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaaggcattttctgggagtaggtgctgctctcccccagGGCCTTATGGCAGTGCATGTCACTGATGACTATAGCCTGATTGCTAGAGGTTTTGCCGAATCAACTGTAAGAGTATGGTCTGTAACTCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtatttgcattggagttaccagatgggtttaaaaagacacaatgggttaa Alignment from GeneWise GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaaggcattttctgggagtaggtgctgctctcccccagGGCCTTATGGCAGTGCATGTCACTGATGACTATAGCCTGATTGCTAGAGGTTTTGCCGAATCAACTGTAAGAGTATGGTCTGTAACTCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtatttgcattggagttaccagatgggtttaaaaagacacaatgggttaa #### Taf5_ID10100_8 --> 1 - 2 Original Alignment gAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTcg taggaatataagtagttaagtctatcaagttatttcctttcctgactcagaAACTACTTACTCTCATCCTCAGAAGATGGGACAGGAAGACTTTGGCCACTTAAAATAATCACCTGTTTGGTTGGATATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCCTATGGATACTATTTTGTCTCA------CATGATCGAGTGGCAtggtgagtccactcttttcatattactgttgccaccaggcatgaacaacttg Alignment from CESAR gAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTcg taggaatataagtagttaagtctatcaagttatttcctttcctgactcagaAACTACTTACTCTCATCCTCAGAAGATGGGACAGGAAGACTTTGGCCACTTAAAATAATCACCTGTTTGGTTGGATATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCCTATGGATACTATTTTGTCTCA------CATGATCGAGTGGCAtggtgagtccactcttttcatattactgttgccaccaggcatgaacaacttg Alignment from Spaln_aa2Genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG taggaatataagtagttaagtctatcaagttatttcctttcctgactcagAAACTACTTACTCTCATCCTCAGAAGATGGGACAGGAAGACTTTGGCCACTTAAAATAATCACCTGTTTGGTTGGATATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCCTATGGATACTATTTTGTCTCA------CATGATCGAGTGGCATGgtgagtccactcttttcatattactgttgccaccaggcatgaacaacttg Alignment from Spaln_nt2Genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG taggaatataagtagttaagtctatcaagttatttcctttcctgactcagAAACTACTTACTCTCATCCTCAGAAGATGGGACAGGAAGACTTTGGCCACTTAAAATAATCACCTGTTTGGTTGGATATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCCTATGGATACTATTTTGTCTCA------CATGATCGAGTGGCATGgtgagtccactcttttcatattactgttgccaccaggcatgaacaacttg Alignment from Pairagon GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG taggaatataagtagttaagtctatcaagttatttcctttcctgactcagAAACTACTTACTCTCATCCTCAGAAGATGGGACAGGAAGACTTTGGCCACTTAAAATAATCACCTGTTTGGTTGGATATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCCTATGGATACTATTTTGTCTCA------CATGATCGAGTGGCATGgtgagtccactcttttcatattactgttgccaccaggcatgaacaacttg Alignment from Exonerate_protein2genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG taggaatataagtagttaagtctatcaagttatttcctttcctgactcagAAACTACTTACTCTCATCCTCAGAAGATGGGACAGGAAGACTTTGGCCACTTAAAATAATCACCTGTTTGGTTGGATATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCCTATGGATACTATTTTGTCTCA------CATGATCGAGTGGCATGgtgagtccactcttttcatattactgttgccaccaggcatgaacaacttg Alignment from Exonerate_coding2genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG taggaatataagtagttaagtctatcaagttatttcctttcctgactcagAAACTACTTACTCTCATCCTCAGAAGATGGGACAGGAAGACTTTGGCCACTTAAAATAATCACCTGTTTGGTTGGATATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCCTATGGATACTATTTTGTCTCA------CATGATCGAGTGGCATGgtgagtccactcttttcatattactgttgccaccaggcatgaacaacttg Alignment from GeneWise GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG taggaatataagtagttaagtctatcaagttatttcctttcctgactcagAAACTACTTACTCTCATCCTCAGAAGATGGGACAGGAAGACTTTGGCCACTTAAAATAATCACCTGTTTGGTTGGATATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCCTATGGATACTATTTTGTCTCA------CATGATCGAGTGGCATGgtgagtccactcttttcatattactgttgccaccaggcatgaacaacttg #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCAAATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCAAATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCAAATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCAAATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCAAATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCAAATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCAAATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ctttgtagttagacttccaacgacacatcactgagcagctcattttttagGAGGCCTTTTGGTGTTTAGTGCAAATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtgagtgcttgggtttagagagcaggtttatcaatcttgaatggacaaac #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG ttccaagggcctttatagactgtgcaatcacttcttttctgccctgccagaCAGCAAGGGTTTCTGCAGGTTATGAAAGCCTATAACCTTCACCACCCGGAACAAGGATATTGTCACTGTCAAGCACAGGGACCTGTAGCTGCAGTTCTTCTCATGCATCTTCCTCCAGAGgtaacatccatttccctagatagaaacagtaatgtatatttactatgatg Alignment from CESAR gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG ttccaagggcctttatagactgtgcaatcacttcttttctgccctgccagaCAGCAAGGGTTTCTGCAGGTTATGAAAGCCTATAACCTTCACCACCCGGAACAAGGATATTGTCACTGTCAAGCACAGGGACCTGTAGCTGCAGTTCTTCTCATGCATCTTCCTCCAGAGgtaacatccatttccctagatagaaacagtaatgtatatttactatgatg Alignment from Spaln_aa2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG ttccaagggcctttatagactgtgcaatcacttcttttctgccctgccagACAGCAAGGGTTTCTGCAGGTTATGAAAGCCTATAACCTTCACCACCCGGAACAAGGATATTGTCACTGTCAAGCACAGGGACCTGTAGCTGCAGTTCTTCTCATGCATCTTCCTCCAGAGgtaacatccatttccctagatagaaacagtaatgtatatttactatgatg Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATA------CTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG ttccaagggcctttatagactgtgcaatcacttcttttctgccctgccagACAGCAAGGGTTTCTGCAGGTTATGAAAGCCTATAACCTTCACCACCCGGAACAAGGATATTGTCACTGTCAAGCACAGGGACCTGTAGCTGCAGTTCTTCTCATGCATCTTCCTCCAGAGgtaacatccatttccctagatagaaacagtaatgtatatttactatgatg Alignment from Pairagon GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGAT------ACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG ttccaagggcctttatagactgtgcaatcacttcttttctgccctgccagACAGCAAGGGTTTCTGCAGGTTATGAAAGCCTATAACCTTCACCACCCGGAACAAGGATATTGTCACTGTCAAGCACAGGGACCTGTAGCTGCAGTTCTTCTCATGCATCTTCCTCCAGAGgtaacatccatttccctagatagaaacagtaatgtatatttactatgatg Alignment from Exonerate_protein2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG ttccaagggcctttatagactgtgcaatcacttcttttctgccctgccagACAGCAAGGGTTTCTGCAGGTTATGAAAGCCTATAACCTTCACCACCCGGAACAAGGATATTGTCACTGTCAAGCACAGGGACCTGTAGCTGCAGTTCTTCTCATGCATCTTCCTCCAGAGgtaacatccatttccctagatagaaacagtaatgtatatttactatgatg Alignment from Exonerate_coding2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG ttccaagggcctttatagactgtgcaatcacttcttttctgccctgccagACAGCAAGGGTTTCTGCAGGTTATGAAAGCCTATAACCTTCACCACCCGGAACAAGGATATTGTCACTGTCAAGCACAGGGACCTGTAGCTGCAGTTCTTCTCATGCATCTTCCTCCAGAGgtaacatccatttccctagatagaaacagtaatgtatatttactatgatg Alignment from GeneWise GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG ttccaagggcctttatagactgtgcaatcacttcttttctgccctgccagACAGCAAGGGTTTCTGCAGGTTATGAAAGCCTATAACCTTCACCACCCGGAACAAGGATATTGTCACTGTCAAGCACAGGGACCTGTAGCTGCAGTTCTTCTCATGCATCTTCCTCCAGAGgtaacatccatttccctagatagaaacagtaatgtatatttactatgatg #### Tbc1d10c_ID402_2 --> 1 - 0 Original Alignment gCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG actttaccactgccttcaattttagcatcgtgtgttcctttctttaccagaCTTTGCCAACCTTCTGCTGACCTCATTCGTCAGCGGGAGATGAAATGGGTTGAAATGGCCCTTCATTGGGAGAAGACAATC---CGATGCTATGCAAAGgtgagacaccataaactaagtcatccctgctactatatctgacttcaatc Alignment from CESAR gCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG actttaccactgccttcaattttagcatcgtgtgttcctttctttaccagaCTTTGCCAACCTTCTGCTGACCTCATTCGTCAGCGGGAGATGAAATGGGTTGAAATGGCCCTTCATTGGGAGAAGACAATC---CGATGCTATGCAAAGgtgagacaccataaactaagtcatccctgctactatatctgacttcaatc Alignment from Spaln_aa2Genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG actttaccactgccttcaattttagcatcgtgtgttcctttctttaccagACTTTGCCAACCTTCTGCTGACCTCATTCGTCAGCGGGAGATGAAATGGGTTGAAATGGCCCTTCATTGGGAGAAGACAATC---CGATGCTATGCAAAGgtgagacaccataaactaagtcatccctgctactatatctgacttcaatc Alignment from Spaln_nt2Genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG actttaccactgccttcaattttagcatcgtgtgttcctttctttaccagACTTTGCCAACCTTCTGCTGACCTCATTCGTCAGCGGGAGATGAAATGGGTTGAAATGGCCCTTCATTGGGAGAAGACAAT---CCGATGCTATGCAAAGgtgagacaccataaactaagtcatccctgctactatatctgacttcaatc Alignment from Pairagon GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG actttaccactgccttcaattttagcatcgtgtgttcctttctttaccagACTTTGCCAACCTTCTGCTGACCTCATTCGTCAGCGGGAGATGAAATGGGTTGAAATGGCCCTTCATTGGGAGAAGACAAT---CCGATGCTATGCAAAGgtgagacaccataaactaagtcatccctgctactatatctgacttcaatc Alignment from Exonerate_protein2genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG actttaccactgccttcaattttagcatcgtgtgttcctttctttaccagACTTTGCCAACCTTCTGCTGACCTCATTCGTCAGCGGGAGATGAAATGGGTTGAAATGGCCCTTCATTGGGAGAAGACAATC---CGATGCTATGCAAAGgtgagacaccataaactaagtcatccctgctactatatctgacttcaatc Alignment from Exonerate_coding2genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG actttaccactgccttcaattttagcatcgtgtgttcctttctttaccagACTTTGCCAACCTTCTGCTGACCTCATTCGTCAGCGGGAGATGAAATGGGTTGAAATGGCCCTTCATTGGGAGAAGACAATC---CGATGCTATGCAAAGgtgagacaccataaactaagtcatccctgctactatatctgacttcaatc Alignment from GeneWise GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG actttaccactgccttcaattttagcatcgtgtgttcctttctttaccagACTTTGCCAACCTTCTGCTGACCTCATTCGTCAGCGGGAGATGAAATGGGTTGAAATGGCCCTTCATTGGGAGAAGACAATC---CGATGCTATGCAAAGgtgagacaccataaactaagtcatccctgctactatatctgacttcaatc #### Tbc1d12_ID7687_10 --> 0 - 0 Original Alignment GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG tgaagggagctgaaaaccacctctgacacacagccccttccttttcgcagGTTCAGGGAATGTCTTTCATTGCAGCGGTCCTTATCCTCAACTTAGAGGAGGCAGATGCTTTCATAGCATTTGCTAATCTCCTAAACAAA---TGCCGACTCGCTTTGTTTCGAGTGGATCACAGTATGgcaagtattcaggtgataaattccagaaaccaactctgttggttatgcac Alignment from CESAR GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG tgaagggagctgaaaaccacctctgacacacagccccttccttttcgcagGTTCAGGGAATGTCTTTCATTGCAGCGGTCCTTATCCTCAACTTAGAGGAGGCAGATGCTTTCATAGCATTTGCTAATCTCCTAAACAAA---TGCCGACTCGCTTTGTTTCGAGTGGATCACAGTATGgcaagtattcaggtgataaattccagaaaccaactctgttggttatgcac Alignment from Spaln_aa2Genome GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG tgaagggagctgaaaaccacctctgacacacagccccttccttttcgcagGTTCAGGGAATGTCTTTCATTGCAGCGGTCCTTATCCTCAACTTAGAGGAGGCAGATGCTTTCATAGCATTTGCTAATCTCCTAAACAAA---TGCCGACTCGCTTTGTTTCGAGTGGATCACAGTATGgcaagtattcaggtgataaattccagaaaccaactctgttggttatgcac Alignment from Spaln_nt2Genome GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG tgaagggagctgaaaaccacctctgacacacagccccttccttttcgcagGTTCAGGGAATGTCTTTCATTGCAGCGGTCCTTATCCTCAACTTAGAGGAGGCAGATGCTTTCATAGCATTTGCTAATCTCCTAAACAA---ATGCCGACTCGCTTTGTTTCGAGTGGATCACAGTATGgcaagtattcaggtgataaattccagaaaccaactctgttggttatgcac Alignment from Pairagon GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG tgaagggagctgaaaaccacctctgacacacagccccttccttttcgcagGTTCAGGGAATGTCTTTCATTGCAGCGGTCCTTATCCTCAACTTAGAGGAGGCAGATGCTTTCATAGCATTTGCTAATCTCCTAAACAA---ATGCCGACTCGCTTTGTTTCGAGTGGATCACAGTATGgcaagtattcaggtgataaattccagaaaccaactctgttggttatgcac Alignment from Exonerate_protein2genome tgaagggagctgaaaaccacctctgacacacagccccttccttttcgcaggttcagggaatgtctttcattgcagcggtccttatcctcaacttagaggaggcagatgctttcatagcatttgctaatctcctaaacaaatgccgactcgctttgtttcgagtggatcacagtatggcaagtattcaggtgataaattccagaaaccaactctgttggttatgcac Alignment from Exonerate_coding2genome tgaagggagctgaaaaccacctctgacacacagccccttccttttcgcaggttcagggaatgtctttcattgcagcggtccttatcctcaacttagaggaggcagatgctttcatagcatttgctaatctcctaaacaaatgccgactcgctttgtttcgagtggatcacagtatggcaagtattcaggtgataaattccagaaaccaactctgttggttatgcac Alignment from GeneWise GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG------------ tgaagggagctgaaaaccacctctgacacacagccccttccttttcgcagGTTCAGGGAATGTCTTTCATTGCAGCGGTCCTTATCCTCAACTTAGAGGAGGCAGATGCTTTCATAGCATTTGCTAATCTCCTAAACAAA---TGCCGACTCGCTTTGTTTCGAGTGGATCACAGTATGGCAAGTATTCAGgtgataaattccagaaaccaactctgttggttatgcac #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtacgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACTACTCTCTTCCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from CESAR GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgttgagacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACTACTCTCTTCCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from Spaln_aa2Genome GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtacgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACTACTCTCTTCCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from Spaln_nt2Genome GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtacgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACTACTCTCTTCCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from Pairagon GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtacgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACTACTCTCTTCCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from Exonerate_protein2genome GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtacgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACTACTCTCTTCCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from Exonerate_coding2genome ggccaacaagtacgtacatagtgttgaggatggtttttattctatttcaggatgaggacacagagaaactactctcttccccagatgcaacaacattggagaatagctggacccctgataaggaagtagccggaagtcctggggaagaggagactgatgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg Alignment from GeneWise GGCCAGCAG GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG GGCCAACAAgtacgtacatagtgttgaggatggtttttattctatttcagGATGAGGACACAGAGAAACTACTCTCTTCCCCAGATGCAACAACATTGGAGAATAGCTGGACCCCTGATAAGGAAGTAGCCGGAAGTCCTGGGGAAGAGGAGACTGATgtgagcgaccaaggatgcaaagactcacctgccagtgagattagttgctg #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccaggCACTTCGGTGAGGCCCACAGGCTGCTACTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TCCCTCTTCTCCCAGAACCCA---AATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccaggCACTTCGGTGAGGCCCACAGGCTGCTACTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TCCCTCTTCTCCCAGAACCCA---AATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccagGCACTTCGGTGAGGCCCACAGGCTGCTACTTGTGTCA------GAGCTTATTTTCCTCCTGGGCCTCTATCTGGTG------CTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TCCCTCTTCTCCCAGAACCCA---AATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccagGCACTTCGGTGAGGCCCACAGGCTGCTACTTG------TGTCAGAGCTTATTTTCCTCCTGGGCCT------CTATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCCA------TTATTCACTTCATCAAT---TCCCTCTTCTCCCAGAACC---CAAATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccagGCACTTCGGTGAGGCCCACAGGCTGCTACTTG------TGTCAGAGCTTATTTTCCTCCTGGGCCT------CTATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCCA------TTATTCACTTCATCAAT---TCCCTCTTCTCCCAGAACC---CAAATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccagGCACTTCGGTGAGGCCCACAGGCTGCTACTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAATTCC---CTCTTCTCCCAGAACCCA---AATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from Exonerate_coding2genome tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccaggcacttcggtgaggcccacaggctgctacttgtgtcagagcttattttcctcctgggcctctatctggtgctcctaattctctataaatgggtaaacatctctgcaactagttctgcctcagcccccattattcacttcatcaattccctcttctcccagaacccaaatcatctgctgttccatgggcaggtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG tgagtcttgcctcatcctgattagaatacgcttcatctccatgcccccagGCACTTCGGTGAGGCCCACAGGCTGCTACTT------GTGTCAGAGCTTATTTTCCTCCTGGGCCTC------TATCTGGTGCTCCTAATTCTCTATAAATGGGTAAACATCTCTGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAATTCC---CTCTTCTCCCAGAACCCA---AATCATCTGCTGTTCCATGGGCAGgtaccaagtgggtgacaggtgattttaatgtcatatagcataatccgacc #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAAT---GAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGctgtgagtctatgtggagcacttctggctcaaaatattggttacctcaacac Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTAC---AATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGctgtgagtctatgtggagcacttctggctcaaaatattggttatttccttct Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTAC---AATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTgtgagtctatgtggagcacttctggctcaaaatattggttacctcaacac Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCAT--CTACAA-TGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTgtgagtctatgtggagcacttctggctcaaaatattggttacctcaacac Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCAT-----------------------------CTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCAGCT--------------------------ACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTGTGAGTCTATGTGGAGCACTTCTGGCTCAAAATATTGGTTACCTCAACAC Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATC---TACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTgtgagtctatgtggagcacttctggctcaaaatattggttacctcaacac Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATC---TACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAGTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCA cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTGTGAGTCTATGTGGAGCACTTCTGGCTCAAAATATTGGTTACCTCAACAC Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATC---TACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG cgcagctgaagaacagggaacctttttctttccctgttactctctcctagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTAACAGGTCTGTTCTCTGTCTATACTGGCTTTATTTCTACTACTGAATGTTATAGTCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAATCAATCGGGCTGGCTgtgagtctatgtggagcacttctggctcaaaatattggttacctcaacac #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aaggagggggagtggagagaagtctacaaacccaccttcctttttttcagcTTTGTGGCAGGTGCAGTGGAACCCTACAAGGCTACAGCCTTGGAGCGTCTGCTGTGGAGAGCATGCCGTGGCTTTCTTATTGCAAGTTTTCGTGAGACTGAAGGGCAGTTGAAGGATCCAGTGGCAgtactcttagtggcaggacacgttgttttctctcctaaacagGGTGAACC Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aaggagggggagtggagagaagtctacaaacccaccttcctttttttcagcTTTGTGGCAGGTGCAGTGGAACCCTACAAGGCTACAGCCTTGGAGCGTCTGCTGTGGAGAGCATGCCGTGGCTTTCTTATTGCAAGTTTTCGTGAGACTGAAGGGCAGTTGAAGGATCCAGTGGCAgtactcttagtggcaggacatgctcatggtgctttccactagGGTGAACC Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aaggagggggagtggagagaagtctacaaacccaccttcctttttttcagCTTTGTGGCAGGTGCAGTGGAACCCTACAAGGCTACAGCCTTGGAGCGTCTGCTGTGGAGAGCATGCCGTGGCTTTCTTATTGCAAGTTTTCGTGAGACTGAAGGGCAGTTGAAGGATCCAGTGGCAgtactcttagtggcaggacacgttgttttctctcctaaacagGGTGAACC Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aaggagggggagtggagagaagtctacaaacccaccttcctttttttcagCTTTGTGGCAGGTGCAGTGGAACCCTACAAGGCTACAGCCTTGGAGCGTCTGCTGTGGAGAGCATGCCGTGGCTTTCTTATTGCAAGTTTTCGTGAGACTGAAGGGCAGTTGAAGGATCCAGTGGCAgtactcttagtggcaggacacgttgttttctctcctaaacagGGTGAACC Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGAC------------------------------------------GGGTGAGCC aaggagggggagtggagagaagtctacaaacccaccttcctttttttcagCTTTGTGGCAGGTGCAGTGGAACCCTACAAGGCTACAGCCTTGGAGCGTCTGCTGTGGAGAGCATGCCGTGGCTTTCTTATTGCAAGTTTTCGTGAGACTGAAGGGCAGTTGAAGGATCCAGTGGCAGTACTCTTAGTGGCAGGACACGTTGTTTTCTCTCCTAAACAGGGTGAACC Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aaggagggggagtggagagaagtctacaaacccaccttcctttttttcagCTTTGTGGCAGGTGCAGTGGAACCCTACAAGGCTACAGCCTTGGAGCGTCTGCTGTGGAGAGCATGCCGTGGCTTTCTTATTGCAAGTTTTCGTGAGACTGAAGGGCAGTTGAAGGATCCAGTGGCAgtactcttagtggcaggacacgttgttttctctcctaaacagGGTGAACC Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC aaggagggggagtggagagaagtctacaaacccaccttcctttttttcagCTTTGTGGCAGGTGCAGTGGAACCCTACAAGGCTACAGCCTTGGAGCGTCTGCTGTGGAGAGCATGCCGTGGCTTTCTTATTGCAAGTTTTCGTGAGACTGAAGGGCAGTTGAAGGATCCAGTGGCAgtactcttagtggcaggacacgttgttttctctcctaaacagGGTGAACC Alignment from GeneWise TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG------------------------------------------GGTGAGCC aaggagggggagtggagagaagtctacaaacccaccttcctttttttcagCTTTGTGGCAGGTGCAGTGGAACCCTACAAGGCTACAGCCTTGGAGCGTCTGCTGTGGAGAGCATGCCGTGGCTTTCTTATTGCAAGTTTTCGTGAGACTGAAGGGCAGTTGAAGGATCCAGTGGCAGTACTCTTAGTGGCAGGACACGTTGTTTTCTCTCCTAAACAGGGTGAACC #### Tctn3_ID7988_13 --> 0 - 0 Original Alignment GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagaaggttccacagacccagtcagaagattatgcttttgttttgaagGCAGTCAACTGCACCTCTTGTTGCCTCATAACAGTATCCCTAGAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGCCTCATGTG---------------GTCTACCAATGCAAGGCAGTTCAGgtgagcctgtagcttacaggcagttgtacatccctggcttacaattacat Alignment from CESAR GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagaaggttccacagacccagtcagaagattatgcttttgttttgaagGCAGTCAACTGCACCTCTTGTTGCCTCATAACAGTATCCCTAGAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGCCTCATGTGGTC---------------TACCAATGCAAGGCAGTTCAGgtgagcctgtagcttacaggcagttgtacatccctggcttacaattacat Alignment from Spaln_aa2Genome GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagaaggttccacagacccagtcagaagattatgcttttgttttgaagGCAGTCAACTGCACCTCTTGTTGCCTCATAACAGTATCCCTAGAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGCCTCATGTG---------------GTCTACCAATGCAAGGCAGTTCAGgtgagcctgtagcttacaggcagttgtacatccctggcttacaattacat Alignment from Spaln_nt2Genome GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagaaggttccacagacccagtcagaagattatgcttttgttttgaagGCAGTCAACTGCACCTCTTGTTGCCTCATAACAGTATCCCTAGAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGCCTCATGTGG---------------TCTACCAATGCAAGGCAGTTCAGgtgagcctgtagcttacaggcagttgtacatccctggcttacaattacat Alignment from Pairagon GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagaaggttccacagacccagtcagaagattatgcttttgttttgaagGCAGTCAACTGCACCTCTTGTTGCCTCATAACAGTATCCCTAGAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGCCTCATGTGGTC---------------TACCAATGCAAGGCAGTTCAGgtgagcctgtagcttacaggcagttgtacatccctggcttacaattacat Alignment from Exonerate_protein2genome GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagaaggttccacagacccagtcagaagattatgcttttgttttgaagGCAGTCAACTGCACCTCTTGTTGCCTCATAACAGTATCCCTAGAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGCCTCATGTG---------------GTCTACCAATGCAAGGCAGTTCAGgtgagcctgtagcttacaggcagttgtacatccctggcttacaattacat Alignment from Exonerate_coding2genome GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagaaggttccacagacccagtcagaagattatgcttttgttttgaagGCAGTCAACTGCACCTCTTGTTGCCTCATAACAGTATCCCTAGAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGCCTCATGTG---------------GTCTACCAATGCAAGGCAGTTCAGgtgagcctgtagcttacaggcagttgtacatccctggcttacaattacat Alignment from GeneWise GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagaaggttccacagacccagtcagaagattatgcttttgttttgaagGCAGTCAACTGCACCTCTTGTTGCCTCATAACAGTATCCCTAGAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGCCTCATGTG---------------GTCTACCAATGCAAGGCAGTTCAGgtgagcctgtagcttacaggcagttgtacatccctggcttacaattacat #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag ttgtattctttaacaatcccttatcactctgctgctttctgtcatgtcagATGACCCTACTGCAGAGCGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGaggtgagcggcttgtatgaaatgaccctgtgatgaggctttacctagttgga Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag ttgtattctttaacaatcccttatcactctgctgctttctgtcatgtcagATGACCCTACTGCAGAGCGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGaggtgagcggcttgtatgaaatgaccctgtgatgaggctttacctagttgga Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG ttgtattctttaacaatcccttatcactctgctgctttctgtcatgtcagATGACCCTACTGCAGAGCGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagcggcttgtatgaaatgaccctgtgatgaggctttacctagttgga Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG ttgtattctttaacaatcccttatcactctgctgctttctgtcatgtcagATGACCCTACTGCAGAGCGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagcggcttgtatgaaatgaccctgtgatgaggctttacctagttgga Alignment from Pairagon ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG ttgtattctttaacaatcccttatcactctgctgctttctgtcatgtcagATGACCCTACTGCAGAGCGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagcggcttgtatgaaatgaccctgtgatgaggctttacctagttgga Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG ttgtattctttaacaatcccttatcactctgctgctttctgtcatgtcagATGACCCTACTGCAGAGCGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagcggcttgtatgaaatgaccctgtgatgaggctttacctagttgga Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG ttgtattctttaacaatcccttatcactctgctgctttctgtcatgtcagATGACCCTACTGCAGAGCGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagcggcttgtatgaaatgaccctgtgatgaggctttacctagttgga Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG ttgtattctttaacaatcccttatcactctgctgctttctgtcatgtcagATGACCCTACTGCAGAGCGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagcggcttgtatgaaatgaccctgtgatgaggctttacctagttgga #### Tctn3_ID7997_4 --> 2 - 0 Original Alignment caAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG gtctattctgactccccccctctctaagcattataattttgcctttacagctAAAGCAAATTATTTTCAAAAGCTTCACACAGTCAATGCCCCAAATTTCGAAGCACTTGCAGCAGAGTTTGGGGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCTGTATTATTCTACCGAgtaggtgcttggagtcaacaccagcattattagccaggtggcatcttgac Alignment from CESAR caAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG gtctattctgactccccccctctctaagcattataattttgcctttacagctAAAGCAAATTATTTTCAAAAGCTTCACACAGTCAATGCCCCAAATTTCGAAGCACTTGCAGCAGAGTTTGGGGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCTGTATTATTCTACCGAgtaggtgcttggagtcaacaccagcattattagccaggtggcatcttgac Alignment from Spaln_aa2Genome CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG gtctattctgactccccccctctctaagcattataattttgcctttacagCTAAAGCAAATTATTTTCAAAAGCTTCACACAGTCAATGCCCCAAATTTCGAAGCACTTGCAGCAGAGTTTGGGGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCTGTATTATTCTACCGAgtaggtgcttggagtcaacaccagcattattagccaggtggcatcttgac Alignment from Spaln_nt2Genome CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG gtctattctgactccccccctctctaagcattataattttgcctttacagCTAAAGCAAATTATTTTCAAAAGCTTCACACAGTCAATGCCCCAAATTTCGAAGCACTTGCAGCAGAGTTTGGGGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCTGTATTATTCTACCGAgtaggtgcttggagtcaacaccagcattattagccaggtggcatcttgac Alignment from Pairagon CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG gtctattctgactccccccctctctaagcattataattttgcctttacagCTAAAGCAAATTATTTTCAAAAGCTTCACACAGTCAATGCCCCAAATTTCGAAGCACTTGCAGCAGAGTTTGGGGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCTGTATTATTCTACCGAgtaggtgcttggagtcaacaccagcattattagccaggtggcatcttgac Alignment from Exonerate_protein2genome CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG gtctattctgactccccccctctctaagcattataattttgcctttacagCTAAAGCAAATTATTTTCAAAAGCTTCACACAGTCAATGCCCCAAATTTCGAAGCACTTGCAGCAGAGTTTGGGGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCTGTATTATTCTACCGAgtaggtgcttggagtcaacaccagcattattagccaggtggcatcttgac Alignment from Exonerate_coding2genome CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG gtctattctgactccccccctctctaagcattataattttgcctttacagCTAAAGCAAATTATTTTCAAAAGCTTCACACAGTCAATGCCCCAAATTTCGAAGCACTTGCAGCAGAGTTTGGGGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCTGTATTATTCTACCGAgtaggtgcttggagtcaacaccagcattattagccaggtggcatcttgac Alignment from GeneWise CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG gtctattctgactccccccctctctaagcattataattttgcctttacagCTAAAGCAAATTATTTTCAAAAGCTTCACACAGTCAATGCCCCAAATTTCGAAGCACTTGCAGCAGAGTTTGGGGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCTGTATTATTCTACCGAgtaggtgcttggagtcaacaccagcattattagccaggtggcatcttgac #### Tdrd1_ID12206_7 --> 0 - 0 Original Alignment GGTACAGTTACTGAATTCAAGCACCCGAGTAACTTTTATATCCAGTTGTATTCTTCAGAGGTTCTAGAAAACATGAACCAACTCTCTACA---AGCTTGAAAGAGACATATGCAAATGTGGTGCCTGAAGATGGTTATCTTCCTGTTAAGGGGGAAGTTTGTGTTGCCAAATACACAGTTGATCAG tgagtcttccaattagtaacctcctgttcttgtatgtttctccaattcagGGTACAGTAACTGACTTCAAGTATCCCCGTAACCTTTACACACAGTTATCCTCTTCAGAGGTCCTACAAAATATCAATGAACTCTCAATAAGCTGCCTTAAAGAGACTTATGCAAACTTGGTACCTGAT---GGGTATCTG---GTAAAGGGGGAGGTCTGTGTGACCAAATATACAGTTGACCAAgtgagtgcaacccgcttgagtacattgttggataggctgtactgctcacc Alignment from CESAR GGTACAGTTACTGAATTCAAGCACCCGAGTAACTTTTATATCCAGTTGTATTCTTCAGAGGTTCTAGAAAACATGAACCAACTCTCTACAAGC---TTGAAAGAGACATATGCAAATGTGGTGCCTGAAGATGGTTATCTTCCTGTTAAGGGGGAAGTTTGTGTTGCCAAATACACAGTTGATCAG tgagtcttccaattagtaacctcctgttcttgtatgtttctccaattcagGGTACAGTAACTGACTTCAAGTATCCCCGTAACCTTTACACACAGTTATCCTCTTCAGAGGTCCTACAAAATATCAATGAACTCTCAATAAGCTGCCTTAAAGAGACTTATGCAAACTTGGTACCT---GATGGGTATCTG---GTAAAGGGGGAGGTCTGTGTGACCAAATATACAGTTGACCAAgtgagtgcaacccgcttgagtacattgttggataggctgtactgctcacc Alignment from Spaln_aa2Genome GGTACAGTTACTGAATTCAAGCACCCGAGTAACTTTTATATCCAGTTGTATTCTTCAGAGGTTCTAGAAAACATGAACCAACTCTCTACAAGC---TTGAAAGAGACATATGCAAATGTGGTGCCTGAAGATGGTTATCTTCCTGTTAAGGGGGAAGTTTGTGTTGCCAAATACACAGTTGATCAG tgagtcttccaattagtaacctcctgttcttgtatgtttctccaattcagGGTACAGTAACTGACTTCAAGTATCCCCGTAACCTTTACACACAGTTATCCTCTTCAGAGGTCCTACAAAATATCAATGAACTCTCAATAAGCTGCCTTAAAGAGACTTATGCAAACTTGGTACCT---GATGGGTATCTG---GTAAAGGGGGAGGTCTGTGTGACCAAATATACAGTTGACCAAgtgagtgcaacccgcttgagtacattgttggataggctgtactgctcacc Alignment from Spaln_nt2Genome GGTACAGTTACTGAATTCAAGCACCCGAGTAACTTTTATATCCAGTTGTATTCTTCAGAGGTTCTAGAAAACATGAACCAACTCTCTACAAGCT---TGAAAGAGACATATGCAAATGTGGTGCCTGAAGATGGTTATCTTCCTGTTAAGGGGGAAGTTTGTGTTGCCAAATACACAGTTGATCAG tgagtcttccaattagtaacctcctgttcttgtatgtttctccaattcagGGTACAGTAACTGACTTCAAGTATCCCCGTAACCTTTACACACAGTTATCCTCTTCAGAGGTCCTACAAAATATCAATGAACTCTCAATAAGCTGCCTTAAAGAGACTTATGCAAACTTGGTACCT---GATGGGTATCT---GGTAAAGGGGGAGGTCTGTGTGACCAAATATACAGTTGACCAAgtgagtgcaacccgcttgagtacattgttggataggctgtactgctcacc Alignment from Pairagon GGTACAGTTACTGAATTCAAGCACCCGAGTAACTTTTATATCCAGTTGTATTCTTCAGAGGTTCTAGAAAACATGAACCAACTCTCTACAAGCT---TGAAAGAGACATATGCAAATGTGGTGCCTGAAGATGGTTATCTTCCTGTTAAGGGGGAAGTTTGTGTTGCCAAATACACAGTTGATCAG tgagtcttccaattagtaacctcctgttcttgtatgtttctccaattcagGGTACAGTAACTGACTTCAAGTATCCCCGTAACCTTTACACACAGTTATCCTCTTCAGAGGTCCTACAAAATATCAATGAACTCTCAATAAGCTGCCTTAAAGAGACTTATGCAAACTTGGTACCT---GATGGGTATCT---GGTAAAGGGGGAGGTCTGTGTGACCAAATATACAGTTGACCAAgtgagtgcaacccgcttgagtacattgttggataggctgtactgctcacc Alignment from Exonerate_protein2genome GGTACAGTTACTGAATTCAAGCACCCGAGTAACTTTTATATCCAGTTGTATTCTTCAGAGGTTCTAGAAAACATGAACCAACTCTCTACAAGC---TTGAAAGAGACATATGCAAATGTGGTGCCTGAAGATGGTTATCTTCCTGTTAAGGGGGAAGTTTGTGTTGCCAAATACACAGTTGATCAG tgagtcttccaattagtaacctcctgttcttgtatgtttctccaattcagGGTACAGTAACTGACTTCAAGTATCCCCGTAACCTTTACACACAGTTATCCTCTTCAGAGGTCCTACAAAATATCAATGAACTCTCAATAAGCTGCCTTAAAGAGACTTATGCAAACTTGGTACCT---GATGGGTATCTG---GTAAAGGGGGAGGTCTGTGTGACCAAATATACAGTTGACCAAgtgagtgcaacccgcttgagtacattgttggataggctgtactgctcacc Alignment from Exonerate_coding2genome tgagtcttccaattagtaacctcctgttcttgtatgtttctccaattcagggtacagtaactgacttcaagtatccccgtaacctttacacacagttatcctcttcagaggtcctacaaaatatcaatgaactctcaataagctgccttaaagagacttatgcaaacttggtacctgatgggtatctggtaaagggggaggtctgtgtgaccaaatatacagttgaccaagtgagtgcaacccgcttgagtacattgttggataggctgtactgctcacc Alignment from GeneWise GGTACAGTTACTGAATTCAAGCACCCGAGTAACTTTTATATCCAGTTGTATTCTTCAGAGGTTCTAGAAAACATGAACCAACTCTCTACAAGC---TTGAAAGAGACATATGCAAATGTGGTGCCTGAAGATGGTTATCTTCCTGTTAAGGGGGAAGTTTGTGTTGCCAAATACACAGTTGATCAG tgagtcttccaattagtaacctcctgttcttgtatgtttctccaattcagGGTACAGTAACTGACTTCAAGTATCCCCGTAACCTTTACACACAGTTATCCTCTTCAGAGGTCCTACAAAATATCAATGAACTCTCAATAAGCTGCCTTAAAGAGACTTATGCAAACTTGGTACCT---GATGGGTATCTG---GTAAAGGGGGAGGTCTGTGTGACCAAATATACAGTTGACCAAgtgagtgcaacccgcttgagtacattgttggataggctgtactgctcacc #### Tdrd1_ID12208_9 --> 0 - 1 Original Alignment GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg caggtccttgaatagtttttcctgtaggtttatgcctgaatcctgaatagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAGGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATTAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTAGATCTTATCTTACAGAGCTCAggtaaaggaactggccaaccatctagaaccctaggagactcaatatgagat Alignment from CESAR GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg caggtccttgaatagtttttcctgtaggtttatgcctgaatcctgaatagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAGGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATTAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTAGATCTTATCTTACAGAGCTCAggtaaaggaactggccaaccatctagaaccctaggagactcaatatgagat Alignment from Spaln_aa2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggtccttgaatagtttttcctgtaggtttatgcctgaatcctgaatagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAGGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATTAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTAGATCTTATCTTACAGAGCTCAGgtaaaggaactggccaaccatctagaaccctaggagactcaatatgagat Alignment from Spaln_nt2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggtccttgaatagtttttcctgtaggtttatgcctgaatcctgaatagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAGGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATTAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTAGATCTTATCTTACAGAGCTCAGgtaaaggaactggccaaccatctagaaccctaggagactcaatatgagat Alignment from Pairagon GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggtccttgaatagtttttcctgtaggtttatgcctgaatcctgaatagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAGGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATTAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTAGATCTTATCTTACAGAGCTCAGgtaaaggaactggccaaccatctagaaccctaggagactcaatatgagat Alignment from Exonerate_protein2genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggtccttgaatagtttttcctgtaggtttatgcctgaatcctgaatagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAGGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATTAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTAGATCTTATCTTACAGAGCTCAGgtaaaggaactggccaaccatctagaaccctaggagactcaatatgagat Alignment from Exonerate_coding2genome caggtccttgaatagtttttcctgtaggtttatgcctgaatcctgaataggccttaaagtgctgtgtatcaggtgtcattacctctgcaggtaagtggagtgagggatgtgtcacagctgtgaaggcccttctttttgagcaattctgctctattaaagtcatggtcatcatagaggaggaggtccttacatgtgctgtagatcttatcttacagagctcaggtaaaggaactggccaaccatctagaaccctaggagactcaatatgagat Alignment from GeneWise GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggtccttgaatagtttttcctgtaggtttatgcctgaatcctgaatagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAGGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATTAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTAGATCTTATCTTACAGAGCTCAGgtaaaggaactggccaaccatctagaaccctaggagactcaatatgagat #### Tdrd1_ID12214_15 --> 2 - 1 Original Alignment ttCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTTGACGAGACCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCGGGGAGTTCTACTGCCACTTTCTTAAAGATGATg tacccttagtatgtgctagttgagcttcgggtttgtttacttccttcaagtaCCCTTAGGA------GGTCCCACACAAGCCCTAGAGCCAACATGGGTAGAATTCACTGTTGATGAGGCTGTGGATCTGGTGGTCTGTATGATGTACAGTCCTGGGGAGTTCTACTGCCACTTCCTTAAAGATGATggtgagagctgaagttgctgaagattgatgattaacccctgtcactgataa Alignment from CESAR ttCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTTGACGAGACCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCGGGGAGTTCTACTGCCACTTTCTTAAAGATGATg tacccttagtatgtgctagttgagcttcgggtttgtttacttccttcaagtaCCCTTA------GGAGGTCCCACACAAGCCCTAGAGCCAACATGGGTAGAATTCACTGTTGATGAGGCTGTGGATCTGGTGGTCTGTATGATGTACAGTCCTGGGGAGTTCTACTGCCACTTCCTTAAAGATGATggtgagagctgaagttgctgaagattgatgattaacccctgtcactgataa Alignment from Spaln_aa2Genome TTCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTTGACGAGACCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCGGGGAGTTCTACTGCCACTTTCTTAAAGATGATG tacccttagtatgtgctagttgagcttcgggtttgtttacttccttcaagTACCCTTAGGA------GGTCCCACACAAGCCCTAGAGCCAACATGGGTAGAATTCACTGTTGATGAGGCTGTGGATCTGGTGGTCTGTATGATGTACAGTCCTGGGGAGTTCTACTGCCACTTCCTTAAAGATGATGgtgagagctgaagttgctgaagattgatgattaacccctgtcactgataa Alignment from Spaln_nt2Genome TTCCCTTG G--CCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTTGACGAGACCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCGGGGAGTTCTACTGCCACTTTCTTAAAGATGATG TACCCTTAgtatgtgctagttgagcttcgggtttgtttacttccttcaagTACCCTTAGGAGGTCCCACACAAGCCCTAGAGCCAACATGGGTAGAATTCACTGTTGATGAGGCTGTGGATCTGGTGGTCTGTATGATGTACAGTCCTGGGGAGTTCTACTGCCACTTCCTTAAAGATGATGgtgagagctgaagttgctgaagattgatgattaacccctgtcactgataa Alignment from Pairagon TTCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTTGACGAGACCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCGGGGAGTTCTACTGCCACTTTCTTAAAGATGATG tacccttagtatgtgctagttgagcttcgggtttgtttacttccttcaagtacccttaggaggtcccacacaagccctag------------------------------------AGCCAACATGGGTAGAATTCACTGTTGATGAGGCTGTGGATCTGGTGGTCTGTATGATGTACAGTCCTGGGGAGTTCTACTGCCACTTCCTTAAAGATGATGgtgagagctgaagttgctgaagattgatgattaacccctgtcactgataa Alignment from Exonerate_protein2genome TTCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTTGACGAGACCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCGGGGAGTTCTACTGCCACTTTCTTAAAGATGATG tacccttagtatgtgctagttgagcttcgggtttgtttacttccttcaagTACCCTTAGGA------GGTCCCACACAAGCCCTAGAGCCAACATGGGTAGAATTCACTGTTGATGAGGCTGTGGATCTGGTGGTCTGTATGATGTACAGTCCTGGGGAGTTCTACTGCCACTTCCTTAAAGATGATGgtgagagctgaagttgctgaagattgatgattaacccctgtcactgataa Alignment from Exonerate_coding2genome TTCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTTGACGAGACCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCGGGGAGTTCTACTGCCACTTTCTTAAAGATGATG tacccttagtatgtgctagttgagcttcgggtttgtttacttccttcaagTACCCTTAGGA------GGTCCCACACAAGCCCTAGAGCCAACATGGGTAGAATTCACTGTTGATGAGGCTGTGGATCTGGTGGTCTGTATGATGTACAGTCCTGGGGAGTTCTACTGCCACTTCCTTAAAGATGATGgtgagagctgaagttgctgaagattgatgattaacccctgtcactgataa Alignment from GeneWise TTCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTTGACGAGACCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCGGGGAGTTCTACTGCCACTTTCTTAAAGATGATG tacccttagtatgtgctagttgagcttcgggtttgtttacttccttcaagTACCCTTAGGA------GGTCCCACACAAGCCCTAGAGCCAACATGGGTAGAATTCACTGTTGATGAGGCTGTGGATCTGGTGGTCTGTATGATGTACAGTCCTGGGGAGTTCTACTGCCACTTCCTTAAAGATGATGgtgagagctgaagttgctgaagattgatgattaacccctgtcactgataa #### Tdrd1_ID12219_20 --> 2 - 1 Original Alignment aaAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAa ctcatgcatttttttgacgagcctgtttaaataactttgttctcatttagaaAACCAAGAGAGGCTGTGTGTATTAGTGGCTGAGCTATTAGAACATTGTAATGCC---AAGGGGCGGCCGGCTTACCGGCCACGAACTGGTGAAGCATGTTGTGCAACATACATAagtaacatcacttgtgcgcatggcattatgttaccctggtctcttttcaaa Alignment from CESAR aaAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAa ctcatgcatttttttgacgagcctgtttaaataactttgttctcatttagaaAACCAAGAGAGGCTGTGTGTATTAGTGGCTGAGCTATTAGAACATTGTAATGCC---AAGGGGCGGCCGGCTTACCGGCCACGAACTGGTGAAGCATGTTGTGCAACATACATAagtaacatcacttgtgcgcatggcattatgttaccctggtctcttttcaaa Alignment from Spaln_aa2Genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA ctcatgcatttttttgacgagcctgtttaaataactttgttctcatttagAAAACCAAGAGAGGCTGTGTGTATTAGTGGCTGAGCTATTAGAACATTGTAATGCC---AAGGGGCGGCCGGCTTACCGGCCACGAACTGGTGAAGCATGTTGTGCAACATACATAAgtaacatcacttgtgcgcatggcattatgttaccctggtctcttttcaaa Alignment from Spaln_nt2Genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA ctcatgcatttttttgacgagcctgtttaaataactttgttctcatttagAAAACCAAGAGAGGCTGTGTGTATTAGTGGCTGAGCTATTAGAACATTGTAATGC---CAAGGGGCGGCCGGCTTACCGGCCACGAACTGGTGAAGCATGTTGTGCAACATACATAAgtaacatcacttgtgcgcatggcattatgttaccctggtctcttttcaaa Alignment from Pairagon AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA ctcatgcatttttttgacgagcctgtttaaataactttgttctcatttagAAAACCAAGAGAGGCTGTGTGTATTAGTGGCTGAGCTATTAGAACATTGTAATGCC---AAGGGGCGGCCGGCTTACCGGCCACGAACTGGTGAAGCATGTTGTGCAACATACATAAgtaacatcacttgtgcgcatggcattatgttaccctggtctcttttcaaa Alignment from Exonerate_protein2genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA ctcatgcatttttttgacgagcctgtttaaataactttgttctcatttagAAAACCAAGAGAGGCTGTGTGTATTAGTGGCTGAGCTATTAGAACATTGTAATGCC---AAGGGGCGGCCGGCTTACCGGCCACGAACTGGTGAAGCATGTTGTGCAACATACATAAgtaacatcacttgtgcgcatggcattatgttaccctggtctcttttcaaa Alignment from Exonerate_coding2genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA ctcatgcatttttttgacgagcctgtttaaataactttgttctcatttagAAAACCAAGAGAGGCTGTGTGTATTAGTGGCTGAGCTATTAGAACATTGTAATGCC---AAGGGGCGGCCGGCTTACCGGCCACGAACTGGTGAAGCATGTTGTGCAACATACATAAgtaacatcacttgtgcgcatggcattatgttaccctggtctcttttcaaa Alignment from GeneWise AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA ctcatgcatttttttgacgagcctgtttaaataactttgttctcatttagAAAACCAAGAGAGGCTGTGTGTATTAGTGGCTGAGCTATTAGAACATTGTAATGCC---AAGGGGCGGCCGGCTTACCGGCCACGAACTGGTGAAGCATGTTGTGCAACATACATAAgtaacatcacttgtgcgcatggcattatgttaccctggtctcttttcaaa #### Tdrd1_ID12222_23 --> 2 - 0 Original Alignment agATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgtgaccatagcaaccacccaattctcccacccttgaattgtttgcagagATACCTCACAGTAGGGACTGCTGTTGCACAGAATTACAGAAACAGgtgaggatttacagccttctcaacaagctgtctcccctgcacatcgaact Alignment from CESAR agATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgtgaccatagcaaccacccaattctcccacccttgaattgtttgcagagATACCTCACAGTAGGGACTGCTGTTGCACAGAATTACAGAAACAGgtgaggatttacagccttctcaacaagctgtctcccctgcacatcgaact Alignment from Spaln_aa2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgtgaccatagcaaccacccaattctcccacccttgaattgtttgcagAGATACCTCACAGTAGGGACTGCTGTTGCACAGAATTACAGAAACAGgtgaggatttacagccttctcaacaagctgtctcccctgcacatcgaact Alignment from Spaln_nt2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgtgaccatagcaaccacccaattctcccacccttgaattgtttgcagAGATACCTCACAGTAGGGACTGCTGTTGCACAGAATTACAGAAACAGgtgaggatttacagccttctcaacaagctgtctcccctgcacatcgaact Alignment from Pairagon AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgtgaccatagcaaccacccaattctcccacccttgaattgtttgcagAGATACCTCACAGTAGGGACTGCTGTTGCACAGAATTACAGAAACAGgtgaggatttacagccttctcaacaagctgtctcccctgcacatcgaact Alignment from Exonerate_protein2genome tgtgtgaccatagcaaccacccaattctcccacccttgaattgtttgcagagatacctcacagtagggactgctgttgcacagaattacagaaacaggtgaggatttacagccttctcaacaagctgtctcccctgcacatcgaact Alignment from Exonerate_coding2genome tgtgtgaccatagcaaccacccaattctcccacccttgaattgtttgcagagatacctcacagtagggactgctgttgcacagaattacagaaacaggtgaggatttacagccttctcaacaagctgtctcccctgcacatcgaact Alignment from GeneWise AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG tgtgtgaccatagcaaccacccaattctcccacccttgaattgtttgcagAGATACCTCACAGTAGGGACTGCTGTTGCACAGAATTACAGAAACAGgtgaggatttacagccttctcaacaagctgtctcccctgcacatcgaact #### Tectb_ID11558_2 --> 2 - 0 Original Alignment atGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG caaagcaagtgcgtccagcaaaagcaaaaaatgtttaacttttatttcagatGTCATCCTTGTGTTTTCTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGGTGGGAGGTACACCAGCTGGCACTTGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCTCTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaggattgtgcactggaatcatggaagtggtgtagagggtataatgtgc Alignment from CESAR atGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG caaagcaagtgcgtccagcaaaagcaaaaaatgtttaacttttatttcagatGTCATCCTTGTGTTTTCTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGGTGGGAGGTACACCAGCTGGCACTTGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCTCTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaggattgtgcactggaatcatggaagtggtgtagagggtataatgtgc Alignment from Spaln_aa2Genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG caaagcaagtgcgtccagcaaaagcaaaaaatgtttaacttttatttcagATGTCATCCTTGTGTTTTCTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGGTGGGAGGTACACCAGCTGGCACTTGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCTCTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaggattgtgcactggaatcatggaagtggtgtagagggtataatgtgc Alignment from Spaln_nt2Genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG caaagcaagtgcgtccagcaaaagcaaaaaatgtttaacttttatttcagATGTCATCCTTGTGTTTTCTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGGTGGGAGGTACACCAGCTGGCACTTGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCTCTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaggattgtgcactggaatcatggaagtggtgtagagggtataatgtgc Alignment from Pairagon ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG caaagcaagtgcgtccagcaaaagcaaaaaatgtttaacttttatttcagATGTCATCCTTGTGTTTTCTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGGTGGGAGGTACACCAGCTGGCACTTGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCTCTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaggattgtgcactggaatcatggaagtggtgtagagggtataatgtgc Alignment from Exonerate_protein2genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG caaagcaagtgcgtccagcaaaagcaaaaaatgtttaacttttatttcagATGTCATCCTTGTGTTTTCTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGGTGGGAGGTACACCAGCTGGCACTTGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCTCTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaggattgtgcactggaatcatggaagtggtgtagagggtataatgtgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG caaagcaagtgcgtccagcaaaagcaaaaaatgtttaacttttatttcagATGTCATCCTTGTGTTTTCTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGGTGGGAGGTACACCAGCTGGCACTTGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCTCTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaggattgtgcactggaatcatggaagtggtgtagagggtataatgtgc #### Tectb_ID11559_3 --> 0 - 2 Original Alignment TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGag tgatcacgataaccctaaaacataaggatctcttttttcttgtttttcagTATAAGCCTCCCATCTATCACTTCTACAGCCACATCGTGTCAAATGATACCACAGTTATTGTGAAGAACCAGCCACTCAACTATTCATTTTCTTGCACTTACCATTCAACCTACCTTGTGAATCAAGCTGCCTCTGATCAGaagtaagctaccattcaccttaccttgtggatcaagctgcatttgatgagag Alignment from CESAR TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGag tgatcacgataaccctaaaacataaggatctcttttttcttgtttttcagTATAAGCCTCCCATCTATCACTTCTACAGCCACATCGTGTCAAATGATACCACAGTTATTGTGAAGAACCAGCCACTCAACTATTCATTTTCTTGCACTTACCATTCAACCTACCTTGTGAATCAAGCTGCCTCTGATCAGaagtaagctaccattcaccttaccttgtggatcaagctgcatttgatgagag Alignment from Spaln_aa2Genome TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG tgatcacgataaccctaaaacataaggatctcttttttcttgtttttcagTATAAGCCTCCCATCTATCACTTCTACAGCCACATCGTGTCAAATGATACCACAGTTATTGTGAAGAACCAGCCACTCAACTATTCATTTTCTTGCACTTACCATTCAACCTACCTTGTGAATCAAGCTGCCTCTGATCAGAAgtaagctaccattcaccttaccttgtggatcaagctgcatttgatgagag Alignment from Spaln_nt2Genome TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG tgatcacgataaccctaaaacataaggatctcttttttcttgtttttcagTATAAGCCTCCCATCTATCACTTCTACAGCCACATCGTGTCAAATGATACCACAGTTATTGTGAAGAACCAGCCACTCAACTATTCATTTTCTTGCACTTACCATTCAACCTACCTTGTGAATCAAGCTGCCTCTGATCAGAAgtaagctaccattcaccttaccttgtggatcaagctgcatttgatgagag Alignment from Pairagon TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG tgatcacgataaccctaaaacataaggatctcttttttcttgtttttcagTATAAGCCTCCCATCTATCACTTCTACAGCCACATCGTGTCAAATGATACCACAGTTATTGTGAAGAACCAGCCACTCAACTATTCATTTTCTTGCACTTACCATTCAACCTACCTTGTGAATCAAGCTGCCTCTGATCAGAAgtaagctaccattcaccttaccttgtggatcaagctgcatttgatgagag Alignment from Exonerate_protein2genome TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG tgatcacgataaccctaaaacataaggatctcttttttcttgtttttcagTATAAGCCTCCCATCTATCACTTCTACAGCCACATCGTGTCAAATGATACCACAGTTATTGTGAAGAACCAGCCACTCAACTATTCATTTTCTTGCACTTACCATTCAACCTACCTTGTGAATCAAGCTGCCTCTGATCAGAAgtaagctaccattcaccttaccttgtggatcaagctgcatttgatgagag Alignment from Exonerate_coding2genome TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG tgatcacgataaccctaaaacataaggatctcttttttcttgtttttcagTATAAGCCTCCCATCTATCACTTCTACAGCCACATCGTGTCAAATGATACCACAGTTATTGTGAAGAACCAGCCACTCAACTATTCATTTTCTTGCACTTACCATTCAACCTACCTTGTGAATCAAGCTGCCTCTGATCAGAAgtaagctaccattcaccttaccttgtggatcaagctgcatttgatgagag Alignment from GeneWise TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG tgatcacgataaccctaaaacataaggatctcttttttcttgtttttcagTATAAGCCTCCCATCTATCACTTCTACAGCCACATCGTGTCAAATGATACCACAGTTATTGTGAAGAACCAGCCACTCAACTATTCATTTTCTTGCACTTACCATTCAACCTACCTTGTGAATCAAGCTGCCTCTGATCAGAAgtaagctaccattcaccttaccttgtggatcaagctgcatttgatgagag #### Tectb_ID11565_8 --> 0 - 1 Original Alignment AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGa gccaataggtaccactctgtggcacactactttttccctcctctcttcagAATTGCGACAAACGGAAGCGCATGCTACGTGATCAAATGGGAGGTGTATTAGTCGTGGAGCTATCTCTTAGAagtgagttaagtacttacgtagccattgcccatcccccattcccacaagcc Alignment from CESAR AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGa gccaataggtaccactctgtggcacactactttttccctcctctcttcagAATTGCGACAAACGGAAGCGCATGCTACGTGATCAAATGGGAGGTGTATTAGTCGTGGAGCTATCTCTTAGAagtgagttaagtacttacgtagccattgcccatcccccattcccacaagcc Alignment from Spaln_aa2Genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gccaataggtaccactctgtggcacactactttttccctcctctcttcagAATTGCGACAAACGGAAGCGCATGCTACGTGATCAAATGGGAGGTGTATTAGTCGTGGAGCTATCTCTTAGAAgtgagttaagtacttacgtagccattgcccatcccccattcccacaagcc Alignment from Spaln_nt2Genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gccaataggtaccactctgtggcacactactttttccctcctctcttcagAATTGCGACAAACGGAAGCGCATGCTACGTGATCAAATGGGAGGTGTATTAGTCGTGGAGCTATCTCTTAGAAgtgagttaagtacttacgtagccattgcccatcccccattcccacaagcc Alignment from Pairagon AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gccaataggtaccactctgtggcacactactttttccctcctctcttcagAATTGCGACAAACGGAAGCGCATGCTACGTGATCAAATGGGAGGTGTATTAGTCGTGGAGCTATCTCTTAGAAgtgagttaagtacttacgtagccattgcccatcccccattcccacaagcc Alignment from Exonerate_protein2genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGAGCAGG gccaataggtaccactctgtggcacactactttttccctcctctcttcagAATTGCGACAAACGGAAGCGCATGCTACGTGATCAAATGGGAGGTGTATTAGTCGTGGAGCTATCTCTTAGAAGTGAGttaagtacttacgtagccattgcccatcccccattcccacaagcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGAGC gccaataggtaccactctgtggcacactactttttccctcctctcttcagAATTGCGACAAACGGAAGCGCATGCTACGTGATCAAATGGGAGGTGTATTAGTCGTGGAGCTATCTCTTAGAAGTgagttaagtacttacgtagccattgcccatcccccattcccacaagcc #### Tex40_ID1868_4 --> 0 - 1 Original Alignment CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa gcactcccctaccatacaggccatggccattgtgttgcattgtgttacagCGGCCCCTGCCCCTTATGGAGTTCATGGAAAGTGAAGTGCTGTATATTCTCAAAAAGTTCCTTATTagtaattctgcatctcacccactgctgatgcaagtgccaatcacagatcag Alignment from CESAR CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa gcactcccctaccatacaggccatggccattgtgttgcattgtgttacagCGGCCCCTGCCCCTTATGGAGTTCATGGAAAGTGAAGTGCTGTATATTCTCAAAAAGTTCCTTATTagtaattctgcatctcacccactgctgatgcaagtgccaatcacagatcag Alignment from Spaln_aa2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA gcactcccctaccatacaggccatggccattgtgttgcattgtgttacagCGGCCCCTGCCCCTTATGGAGTTCATGGAAAGTGAAGTGCTGTATATTCTCAAAAAGTTCCTTATTAgtaattctgcatctcacccactgctgatgcaagtgccaatcacagatcag Alignment from Spaln_nt2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA gcactcccctaccatacaggccatggccattgtgttgcattgtgttacagCGGCCCCTGCCCCTTATGGAGTTCATGGAAAGTGAAGTGCTGTATATTCTCAAAAAGTTCCTTATTAgtaattctgcatctcacccactgctgatgcaagtgccaatcacagatcag Alignment from Pairagon CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA gcactcccctaccatacaggccatggccattgtgttgcattgtgttacagCGGCCCCTGCCCCTTATGGAGTTCATGGAAAGTGAAGTGCTGTATATTCTCAAAAAGTTCCTTATTAgtaattctgcatctcacccactgctgatgcaagtgccaatcacagatcag Alignment from Exonerate_protein2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA gcactcccctaccatacaggccatggccattgtgttgcattgtgttacagCGGCCCCTGCCCCTTATGGAGTTCATGGAAAGTGAAGTGCTGTATATTCTCAAAAAGTTCCTTATTAgtaattctgcatctcacccactgctgatgcaagtgccaatcacagatcag Alignment from Exonerate_coding2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA gcactcccctaccatacaggccatggccattgtgttgcattgtgttacagCGGCCCCTGCCCCTTATGGAGTTCATGGAAAGTGAAGTGCTGTATATTCTCAAAAAGTTCCTTATTAgtaattctgcatctcacccactgctgatgcaagtgccaatcacagatcag Alignment from GeneWise CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA gcactcccctaccatacaggccatggccattgtgttgcattgtgttacagCGGCCCCTGCCCCTTATGGAGTTCATGGAAAGTGAAGTGCTGTATATTCTCAAAAAGTTCCTTATTAgtaattctgcatctcacccactgctgatgcaagtgccaatcacagatcag #### Tjp2_ID5265_21 --> 0 - 0 Original Alignment GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCG---AAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG ctgaattaccaatagcgaagcacccaattgagacatttctcttctcacagACAAGGAGCTACAACAGAAAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATACCAGGGCGTTCTACTAAAGGATATCAACCCCCAATGGCTGCGAAAAAGCCTGCATTCGGGCACCCTATATTGAAGCCTTCCACACAAGTGCTTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAAGAT---GCTCCCAGATCAGTCCTGGGTAGGGTAGAAATATTTGAGAAGATGGAACACAAAATGAAGTTACAAAGGATGCAAGAACTGCAGGAGGCTCAGAATGCAAGGgtaaaaattattccagtcacctggccaagtattaaagactaagctgctct Alignment from CESAR GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCG---AAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG ctgaattaccaatagcgaagcacccaattgagacatttctcttctcacagACAAGGAGCTACAACAGAAAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATACCAGGGCGTTCTACTAAAGGATATCAACCCCCAATGGCTGCGAAAAAGCCTGCATTCGGGCACCCTATATTGAAGCCTTCCACACAAGTGCTTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAA---GATGCTCCCAGATCAGTCCTGGGTAGGGTAGAAATATTTGAGAAGATGGAACACAAAATGAAGTTACAAAGGATGCAAGAACTGCAGGAGGCTCAGAATGCAAGGgtaaaaattattccagtcacctggccaagtattaaagactaagctgctct Alignment from Spaln_aa2Genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCG---AAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG ctgaattaccaatagcgaagcacccaattgagacatttctcttctcacagACAAGGAGCTACAACAGAAAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATACCAGGGCGTTCTACTAAAGGATATCAACCCCCAATGGCTGCGAAAAAGCCTGCATTCGGGCACCCTATATTGAAGCCTTCCACACAAGTGCTTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAAGAT---GCTCCCAGATCAGTCCTGGGTAGGGTAGAAATATTTGAGAAGATGGAACACAAAATGAAGTTACAAAGGATGCAAGAACTGCAGGAGGCTCAGAATGCAAGGgtaaaaattattccagtcacctggccaagtattaaagactaagctgctct Alignment from Spaln_nt2Genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAA---GCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG ctgaattaccaatagcgaagcacccaattgagacatttctcttctcacagACAAGGAGCTACAACAGAAAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATACCAGGGCGTTCTACTAAAGGATATCAACCCCCAATGGCTGCGAAAAAGCCTGCATTCGGGCACCCTATATTGAAGCCTTCCACACAAGTGCTTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAAC---AAGATGCTCCCAGATCAGTCCTGGGTAGGGTAGAAATATTTGAGAAGATGGAACACAAAATGAAGTTACAAAGGATGCAAGAACTGCAGGAGGCTCAGAATGCAAGGgtaaaaattattccagtcacctggccaagtattaaagactaagctgctct Alignment from Pairagon GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCG---AAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG ctgaattaccaatagcgaagcacccaattgagacatttctcttctcacagACAAGGAGCTACAACAGAAAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATACCAGGGCGTTCTACTAAAGGATATCAACCCCCAATGGCTGCGAAAAAGCCTGCATTCGGGCACCCTATATTGAAGCCTTCCACACAAGTGCTTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAAC---AAGATGCTCCCAGATCAGTCCTGGGTAGGGTAGAAATATTTGAGAAGATGGAACACAAAATGAAGTTACAAAGGATGCAAGAACTGCAGGAGGCTCAGAATGCAAGGgtaaaaattattccagtcacctggccaagtattaaagactaagctgctct Alignment from Exonerate_protein2genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCG---AAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG ctgaattaccaatagcgaagcacccaattgagacatttctcttctcacagACAAGGAGCTACAACAGAAAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATACCAGGGCGTTCTACTAAAGGATATCAACCCCCAATGGCTGCGAAAAAGCCTGCATTCGGGCACCCTATATTGAAGCCTTCCACACAAGTGCTTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAA---GATGCTCCCAGATCAGTCCTGGGTAGGGTAGAAATATTTGAGAAGATGGAACACAAAATGAAGTTACAAAGGATGCAAGAACTGCAGGAGGCTCAGAATGCAAGGgtaaaaattattccagtcacctggccaagtattaaagactaagctgctct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAG---CCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG ctgaattaccaatagcgaagcacccaattgagacatttctcttctcacagACAAGGAGCTACAACAGAAAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATACCAGGGCGTTCTACTAAAGGATATCAACCCCCAATGGCTGCGAAAAAGCCTGCATTCGGGCACCCTATATTGAAGCCTTCCACACAAGTGCTTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAA---GATGCTCCCAGATCAGTCCTGGGTAGGGTAGAAATATTTGAGAAGATGGAACACAAAATGAAGTTACAAAGGATGCAAGAACTGCAGGAGGCTCAGAATGCAAGGgtaaaaattattccagtcacctggccaagtattaaagactaagctgctct #### Tjp2_ID5267_19 --> 0 - 0 Original Alignment ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ggtttgattgcagaacccaatcaactcttctctctgtctggcctccacagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGCCGTCTCATCAGTGACTTTGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCTTCAGAGCCAGTGCAATATGAGGAGgtatgcttagcgtacgttgcaagtatggactgggagccaaagcttggact Alignment from CESAR ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ggtttgattgcagaacccaatcaactcttctctctgtctggcctccacagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGCCGTCTCATCAGTGACTTTGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCTTCAGAGCCAGTGCAATATGAGGAGgtatgcttagcgtacgttgcaagtatggactgggagccaaagcttggact Alignment from Spaln_aa2Genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ggtttgattgcagaacccaatcaactcttctctctgtctggcctccacagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGCCGTCTCATCAGTGACTTTGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCTTCAGAGCCAGTGCAATATGAGGAGgtatgcttagcgtacgttgcaagtatggactgggagccaaagcttggact Alignment from Spaln_nt2Genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ggtttgattgcagaacccaatcaactcttctctctgtctggcctccacagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGCCGTCTCATCAGTGACTTTGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCTTCAGAGCCAGTGCAATATGAGGAGgtatgcttagcgtacgttgcaagtatggactgggagccaaagcttggact Alignment from Pairagon ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ggtttgattgcagaacccaatcaactcttctctctgtctggcctccacagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGCCGTCTCATCAGTGACTTTGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCTTCAGAGCCAGTGCAATATGAGGAGgtatgcttagcgtacgttgcaagtatggactgggagccaaagcttggact Alignment from Exonerate_protein2genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ggtttgattgcagaacccaatcaactcttctctctgtctggcctccacagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGCCGTCTCATCAGTGACTTTGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCTTCAGAGCCAGTGCAATATGAGGAGgtatgcttagcgtacgttgcaagtatggactgggagccaaagcttggact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ggtttgattgcagaacccaatcaactcttctctctgtctggcctccacagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGCCGTCTCATCAGTGACTTTGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCTTCAGAGCCAGTGCAATATGAGGAGgtatgcttagcgtacgttgcaagtatggactgggagccaaagcttggact #### Tjp2_ID5273_14 --> 1 - 1 Original Alignment aGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAg gttcttgatgagcttgacagagtatgagcgatgatctcttgtgaccacaggGCTGAGCAAATAGCAAGTGTTCAAAATGCTCAACAGGAGAACCCTGGTGATCAAACAGACTTCTGGCAGATGCATGGCCAGAGGCCCAGCAGCTGCATTAAGAAGAACTTATTACACAAGAGCCATGAGGATCTCGCTGCTGCTGTATCTGTCAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGggtaaggtaagtgcctgtatatgagcactctggcccttcctagtcctgagg Alignment from CESAR aGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAg gttcttgatgagcttgacagagtatgagcgatgatctcttgtgaccacaggGCTGAGCAAATAGCAAGTGTTCAAAATGCTCAACAGGAGAACCCTGGTGATCAAACAGACTTCTGGCAGATGCATGGCCAGAGGCCCAGCAGCTGCATTAAGAAGAACTTATTACACAAGAGCCATGAGGATCTCGCTGCTGCTGTATCTGTCAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGggtaaggtaagtgcctgtatatgagcactctggcccttcctagtcctgagg Alignment from Spaln_aa2Genome AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttcttgatgagcttgacagagtatgagcgatgatctcttgtgaccacagGGCTGAGCAAATAGCAAGTGTTCAAAATGCTCAACAGGAGAACCCTGGTGATCAAACAGACTTCTGGCAGATGCATGGCCAGAGGCCCAGCAGCTGCATTAAGAAGAACTTATTACACAAGAGCCATGAGGATCTCGCTGCTGCTGTATCTGTCAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaaggtaagtgcctgtatatgagcactctggcccttcctagtcctgagg Alignment from Spaln_nt2Genome AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAACCTC---CGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttcttgatgagcttgacagagtatgagcgatgatctcttgtgaccacagGGCTGAGCAAATAGCAAGTGTTCAAAATGCTCAACAGGAGAACCCTGGTGATCAAACAGACTTCTGGCAGATGCATGGCCAGAGGCCCAGCAGCTGCATTAAGAAGAACTTATTACACAAGAGCCATGAGGATCTCGCTGCTGCTGTATCTGTCAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaaggtaagtgcctgtatatgagcactctggcccttcctagtcctgagg Alignment from Pairagon AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttcttgatgagcttgacagagtatgagcgatgatctcttgtgaccacagGGCTGAGCAAATAGCAAGTGTTCAAAATGCTCAACAGGAGAACCCTGGTGATCAAACAGACTTCTGGCAGATGCATGGCCAGAGGCCCAGCAGCTGCATTAAGAAGAACTTATTACACAAGAGCCATGAGGATCTCGCTGCTGCTGTATCTGTCAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaaggtaagtgcctgtatatgagcactctggcccttcctagtcctgagg Alignment from Exonerate_protein2genome AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttcttgatgagcttgacagagtatgagcgatgatctcttgtgaccacagGGCTGAGCAAATAGCAAGTGTTCAAAATGCTCAACAGGAGAACCCTGGTGATCAAACAGACTTCTGGCAGATGCATGGCCAGAGGCCCAGCAGCTGCATTAAGAAGAACTTATTACACAAGAGCCATGAGGATCTCGCTGCTGCTGTATCTGTCAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaaggtaagtgcctgtatatgagcactctggcccttcctagtcctgagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCCGAGCAAATGGCCAGTGTCCAGAATGCCCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTCAAGAAGAAC---CTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCTACGAGAAGGTTCTGCTTCGGGAAG gttcttgatgagcttgacagagtatgagcgatgatctcttgtgaccacagGGCTGAGCAAATAGCAAGTGTTCAAAATGCTCAACAGGAGAACCCTGGTGATCAAACAGACTTCTGGCAGATGCATGGCCAGAGGCCCAGCAGCTGCATTAAGAAGAACTTATTACACAAGAGCCATGAGGATCTCGCTGCTGCTGTATCTGTCAGCACTCAGTACCCTGCCTATGAGGAAGTGCTCCTTCAAGAGGgtaaggtaagtgcctgtatatgagcactctggcccttcctagtcctgagg #### Tjp2_ID5274_13 --> 2 - 2 Original Alignment tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag tattacttagccttcttgatggtagagccctcttctctctaccccaccagctTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGGTCTTTCGAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCaggtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from CESAR tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag tattacttagccttcttgatggtagagccctcttctctctaccccaccagctTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGGTCTTTCGAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCaggtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from Spaln_aa2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG tattacttagccttcttgatggtagagccctcttctctctaccccaccagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGGTCTTTCGAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCAGgtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from Spaln_nt2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG tattacttagccttcttgatggtagagccctcttctctctaccccaccagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGGTCTTTCGAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCAGgtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from Pairagon TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG tattacttagccttcttgatggtagagccctcttctctctaccccaccagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGGTCTTTCGAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCAGgtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from Exonerate_protein2genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG tattacttagccttcttgatggtagagccctcttctctctaccccaccagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGGTCTTTCGAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCAGgtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG tattacttagccttcttgatggtagagccctcttctctctaccccaccagCTTACAGAGACATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGTTTGGCCTTCACTAGGGGTGAGGTCTTTCGAGTGATAGACACTCTCTATGAAGACAAGTTGGGTCACTGGCTAGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGACTAATCCCCAACAAAAGCAGgtaagaaccccattttgtcagactccaccacgcctattacacctcaaagt #### Tjp2_ID5275_12 --> 0 - 1 Original Alignment GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACg atacattttagccactcttcactaatttaaaaaaaaccttactattttagGTGAACACACAGGATTTCAGAGGGCTAGTACGGGAAGATGCAGCCCTTTTCTTGTTTGAG---------GGGGAGACTGTAACCGTCTTGGCACAAAGCCAAGCCGATggtgagggatcctgaatattctacatgattgtgggcaaccacttaacaggg Alignment from CESAR GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACg atacattttagccactcttcactaatttaaaaaaaaccttactattttagGTGAACACACAGGATTTCAGAGGGCTAGTACGGGAAGATGCAGCCCTTTTCTTGTTTGAG---------GGGGAGACTGTAACCGTCTTGGCACAAAGCCAAGCCGATggtgagggatcctgaatattctacatgattgtgggcaaccacttaacaggg Alignment from Spaln_aa2Genome GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG atacattttagccactcttcactaatttaaaaaaaaccttactattttagGTGAACACACAGGATTTCAGAGGGCTAGTACGGGAAGATGCAGCCCTTTTCTTGTTTGAG---------GGGGAGACTGTAACCGTCTTGGCACAAAGCCAAGCCGATGgtgagggatcctgaatattctacatgattgtgggcaaccacttaacaggg Alignment from Spaln_nt2Genome GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG atacattttagccactcttcactaatttaaaaaaaaccttactattttagGTGAACACACAGGATTTCAGAGGGCTAGTACGGGAAGATGCAGCCCTTTTCTTGTTTG---------AGGGGGAGACTGTAACCGTCTTGGCACAAAGCCAAGCCGATGgtgagggatcctgaatattctacatgattgtgggcaaccacttaacaggg Alignment from Pairagon GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG atacattttagccactcttcactaatttaaaaaaaaccttactattttagGTGAACACACAGGATTTCAGAGGGCTAGTACGGGAAGATGCAGCCCTTTTCTTGTTTG---------AGGGGGAGACTGTAACCGTCTTGGCACAAAGCCAAGCCGATGgtgagggatcctgaatattctacatgattgtgggcaaccacttaacaggg Alignment from Exonerate_protein2genome GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG atacattttagccactcttcactaatttaaaaaaaaccttactattttagGTGAACACACAGGATTTCAGAGGGCTAGTACGGGAAGATGCAGCCCTTTTCTTGTTTGAG---------GGGGAGACTGTAACCGTCTTGGCACAAAGCCAAGCCGATGgtgagggatcctgaatattctacatgattgtgggcaaccacttaacaggg Alignment from Exonerate_coding2genome GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG atacattttagccactcttcactaatttaaaaaaaaccttactattttagGTGAACACACAGGATTTCAGAGGGCTAGTACGGGAAGATGCAGCCCTTTTCTTGTTTGAG---------GGGGAGACTGTAACCGTCTTGGCACAAAGCCAAGCCGATGgtgagggatcctgaatattctacatgattgtgggcaaccacttaacaggg Alignment from GeneWise GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG atacattttagccactcttcactaatttaaaaaaaaccttactattttagGTGAACACACAGGATTTCAGAGGGCTAGTACGGGAAGATGCAGCCCTTTTCTTGTTTGAG---------GGGGAGACTGTAACCGTCTTGGCACAAAGCCAAGCCGATGgtgagggatcctgaatattctacatgattgtgggcaaccacttaacaggg #### Tjp2_ID5279_8 --> 2 - 2 Original Alignment atATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGag tgtcttggtatatatgtctcacaacaagaaaacctattgcacacgttcagatATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAGGACTACCACCCTTCCGCTGAGGAGCTTAAGAAGAGGCCAaggtaaggctcagctttgatgatcaaaatcttgttgttcaatgaagcattga Alignment from CESAR atATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGag tgtcttggtatatatgtctcacaacaagaaaacctattgcacacgttcagatATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAGGACTACCACCCTTCCGCTGAGGAGCTTAAGAAGAGGCCAaggtaaggctcagctttgatgatcaaaatcttgttgttcaatgaagcattga Alignment from Spaln_aa2Genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tgtcttggtatatatgtctcacaacaagaaaacctattgcacacgttcagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAGGACTACCACCCTTCCGCTGAGGAGCTTAAGAAGAGGCCAAGgtaaggctcagctttgatgatcaaaatcttgttgttcaatgaagcattga Alignment from Spaln_nt2Genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tgtcttggtatatatgtctcacaacaagaaaacctattgcacacgttcagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAGGACTACCACCCTTCCGCTGAGGAGCTTAAGAAGAGGCCAAGgtaaggctcagctttgatgatcaaaatcttgttgttcaatgaagcattga Alignment from Pairagon ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tgtcttggtatatatgtctcacaacaagaaaacctattgcacacgttcagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAGGACTACCACCCTTCCGCTGAGGAGCTTAAGAAGAGGCCAAGgtaaggctcagctttgatgatcaaaatcttgttgttcaatgaagcattga Alignment from Exonerate_protein2genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tgtcttggtatatatgtctcacaacaagaaaacctattgcacacgttcagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAGGACTACCACCCTTCCGCTGAGGAGCTTAAGAAGAGGCCAAGgtaaggctcagctttgatgatcaaaatcttgttgttcaatgaagcattga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tgtcttggtatatatgtctcacaacaagaaaacctattgcacacgttcagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAGGACTACCACCCTTCCGCTGAGGAGCTTAAGAAGAGGCCAAGgtaaggctcagctttgatgatcaaaatcttgttgttcaatgaagcattga #### Tjp2_ID5285_2 --> 0 - 0 Original Alignment GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tgagatgagggacttcagtgctcgcattccccccccccttctgatttcagGGTCCAGGTATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtactcttgtggtaggcctctattatgtctgataaccatgaatgttgtac Alignment from CESAR GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tgagatgagggacttcagtgctcgcattccccccccccttctgatttcagGGTCCAGGTATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtactcttgtggtaggcctctattatgtctgataaccatgaatgttgtac Alignment from Spaln_aa2Genome GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tgagatgagggacttcagtgctcgcattccccccccccttctgatttcagGGTCCAGGTATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtactcttgtggtaggcctctattatgtctgataaccatgaatgttgtac Alignment from Spaln_nt2Genome GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tgagatgagggacttcagtgctcgcattccccccccccttctgatttcagGGTCCAGGTATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtactcttgtggtaggcctctattatgtctgataaccatgaatgttgtac Alignment from Pairagon GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tgagatgagggacttcagtgctcgcattccccccccccttctgatttcagGGTCCAGGTATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtactcttgtggtaggcctctattatgtctgataaccatgaatgttgtac Alignment from Exonerate_protein2genome GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tgagatgagggacttcagtgctcgcattccccccccccttctgatttcagGGTCCAGGTATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtactcttgtggtaggcctctattatgtctgataaccatgaatgttgtac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tgagatgagggacttcagtgctcgcattccccccccccttctgatttcagGGTCCAGGTATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtactcttgtggtaggcctctattatgtctgataaccatgaatgttgtac #### Tle4_ID3621_16 --> 0 - 2 Original Alignment AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTAT------GCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTG---------------------------ag tgctcattcatatttgtcccaacagtagccccccttctttttttaatcagAATCGG---GATTACATC------TGCAAGGTATTCCCTGATGGACGAACCCTAGTTGTTGGAGGG------GGTACACTTTCAATGTGGGACCTGGCTGCACCACCTTCATGTATCAAGGCAGAACTGATATCCTCAGCGCCAGCTGCACCTGCATGTTATGGCTATGCTCAGGCTATCACACCTCACTATAAGGTGTGTTTTTCATGCTGCAGTGATGGTAATATAGTGGTATGGGATCTGCACAACAAGACACTTGTTTCATGGAGTCACTGCGGCTTTTTAGAAaggtgagtcaagtaaactaacttctttgaaaatattaccaaaaagatttaaa Alignment from CESAR AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCC---------CCTGCCTGC------TATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTG---------------------------ag tgctcattcatatttgtcccaacagtagccccccttctttttttaatcagAATCGGGAT---TACATC------TGCAAGGTATTCCCTGATGGACGAACCCTAGTTGTTGGAGGG------GGTACACTTTCAATGTGGGACCTGGCTGCACCACCTTCATGTATCAAGGCAGAACTGATATCCTCAGCGCCAGCTGCACCTGCATGTTATGGCTATGCTCAGGCTATCACACCTCACTATAAGGTGTGTTTTTCATGCTGCAGTGATGGTAATATAGTGGTATGGGATCTGCACAACAAGACACTTGTTTCATGGAGTCACTGCGGCTTTTTAGAAaggtgagtcaagtaaactaacttctttgaaaatattaccaaaaagatttaaa Alignment from Spaln_aa2Genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGC------TATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG tgctcattcatatttgtcccaacagtagccccccttctttttttaatcagAATCGGGAT---TACATC------TGCAAGGTATTCCCTGATGGACGAACCCTAGTTGTTGGAGGG------GGTACACTTTCAATGTGGGACCTGGCTGCACCACCTTCATGTATCAAGGCAGAACTGATATCCTCAGCGCCAGCTGCACCTGCATGTTATGGCTATGCTCAGGCTATCACACCTCACTATAAGGTGTGTTTTTCATGCTGCAGTGATGGTAATATAGTGGTATGGGATCTGCACAACAAGACACTTGTTTCatggagtcactgcggctttttagaaaggtgagtcaagtaaactaacttctttgaaaatattaccaaaaagatttaaa Alignment from Spaln_nt2Genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGC-----CTGC----------TATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGT-----GAG tgctcattcatatttgtcccaacagtagccccccttctttttttaatcagAATCGGGAT---TACAT------CTGCAAGGTATTCCCTGATGGACGAACCCTAGTTGTTGGAGGGG------GTACACTTTCAATGTGGGACCTGGCTGCACCACCTTCATGTATCAAGGCAGAACTGATATCCTCAGCGCCAGCTGCACCTGCATGTTATGGCTATGCTCAGGCTATCACACCTCACTATAAGGTGTGTTTTTCATGCTGCAGTGATGGTAATATAGTGGTATGGGATCTGCACAACAAGACACTTGTTTCATGGAgtcactgcggctttttagaaaggtgagtcaagtaaactaacttctttgaaaatattaccaaaaagatttaaa Alignment from Pairagon AACAGGGATAACTACATCCGTTCCTGCAGATTGC-------TCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGC---------------CTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCT--------------------------------GGTGAGGCAA tgctcattcatatttgtcccaacagtagccccccttctttttttaatcagAATCGGGAT---TACATC-------------TGCAAGGTATTCCCTGATGGACGAACCCTAGTTGTTGGAGGGG------GTACACTTTCAATGTGGGACCTGGCTGCACCACCTTCATGTATCAAGGCAGAACTGATATCCTCAGCGCCAGCTGCACCTGCATGTTATGGCTATGCTCAGGCTATCACACCTCACTATAAGGTGTGTTTTTCATGCTGCAGTGATGGTAATATAGTGGTATGGGATCTGCACAACAAGACACTTGTTTCATGGAGTCACTGCGGCTTTTTAGAAAGGTGAGTCAAgtaaactaacttctttgaaaatattaccaaaaagatttaaa Alignment from Exonerate_protein2genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGC---------------TATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG tgctcattcatatttgtcccaacagtagccccccttctttttttaatcagAATCGGGAT---TACATC------TGCAAGGTATTCCCTGATGGACGAACCCTAGTTGTTGGAGGG------GGTACACTTTCAATGTGGGACCTGGCTGCACCACCTTCATGTATCAAGGCAGAACTGATATCCTCAGCGCCAGCTGCACCTGCATGTTATGGCTATGCTCAGGCTATCACACCTCACTATAAGGTGTGTTTTTCATGCTGCAGTGATGGTAATATAGTGGTATGGGATCTGCACAACAAGACACTTGTTTCatggagtcactgcggctttttagaaaggtgagtcaagtaaactaacttctttgaaaatattaccaaaaagatttaaa Alignment from Exonerate_coding2genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGC---------------TATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG tgctcattcatatttgtcccaacagtagccccccttctttttttaatcagAATCGGGAT---TACATC------TGCAAGGTATTCCCTGATGGACGAACCCTAGTTGTTGGAGGG------GGTACACTTTCAATGTGGGACCTGGCTGCACCACCTTCATGTATCAAGGCAGAACTGATATCCTCAGCGCCAGCTGCACCTGCATGTTATGGCTATGCTCAGGCTATCACACCTCACTATAAGGTGTGTTTTTCATGCTGCAGTGATGGTAATATAGTGGTATGGGATCTGCACAACAAGACACTTGTTTCatggagtcactgcggctttttagaaaggtgagtcaagtaaactaacttctttgaaaatattaccaaaaagatttaaa Alignment from GeneWise AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGC---------------TATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTG------- tgctcattcatatttgtcccaacagtagccccccttctttttttaatcagAATCGGGAT---TACATC------TGCAAGGTATTCCCTGATGGACGAACCCTAGTTGTTGGAGGG------GGTACACTTTCAATGTGGGACCTGGCTGCACCACCTTCATGTATCAAGGCAGAACTGATATCCTCAGCGCCAGCTGCACCTGCATGTTATGGCTATGCTCAGGCTATCACACCTCACTATAAGGTGTGTTTTTCATGCTGCAGTGATGGTAATATAGTGGTATGGGATCTGCACAACAAGACACTTGTTTCATGGAgtcactgcggctttttagaaaggtgagtcaagtaaactaacttctttgaaaatattaccaaaaagatttaaa #### Tle4_ID3623_15 --> 1 - 0 Original Alignment aGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttggaatactctttgtcatatactgacacttctacttggtttgtagaACCTACTCCTTTCATCTGAGTGCAGATGGCCAGATGCAGCAAGTCCCTTTTCCCCCTGACGCACTCATAGGTCCTGGAATACCTCAACATGCACGGCTGATAAACACCCTCAACCACGGGGAAGTGGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGAAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGTAACAAAGCTCCTCTGTCTCAACTAGCCTGTTTAgcaagtcaacagggaaagatatgtcagcaaagagacagagactgtgttgt Alignment from CESAR aGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttggaatactctttgtcatatactgacacttctacttggtttgtagaACCTACTCCTTTCATCTGAGTGCAGATGGCCAGATGCAGCAAGTCCCTTTTCCCCCTGACGCACTCATAGGTCCTGGAATACCTCAACATGCACGGCTGATAAACACCCTCAACCACGGGGAAGTGGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGAAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGTAACAAAGCTCCTCTGTCTCAACTAGCCTGTTTAgcaagtcaacagggaaagatatgtcagcaaagagacagagactgtgttgt Alignment from Spaln_aa2Genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttggaatactctttgtcatatactgacacttctacttggtttgtagAACCTACTCCTTTCATCTGAGTGCAGATGGCCAGATGCAGCAAGTCCCTTTTCCCCCTGACGCACTCATAGGTCCTGGAATACCTCAACATGCACGGCTGATAAACACCCTCAACCACGGGGAAGTGGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGAAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGTAACAAAGCTCCTCTGTCTCAACTAGCCTGTTTAgcaagtcaacagggaaagatatgtcagcaaagagacagagactgtgttgt Alignment from Spaln_nt2Genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttggaatactctttgtcatatactgacacttctacttggtttgtagAACCTACTCCTTTCATCTGAGTGCAGATGGCCAGATGCAGCAAGTCCCTTTTCCCCCTGACGCACTCATAGGTCCTGGAATACCTCAACATGCACGGCTGATAAACACCCTCAACCACGGGGAAGTGGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGAAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGTAACAAAGCTCCTCTGTCTCAACTAGCCTGTTTAgcaagtcaacagggaaagatatgtcagcaaagagacagagactgtgttgt Alignment from Pairagon AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttggaatactctttgtcatatactgacacttctacttggtttgtagAACCTACTCCTTTCATCTGAGTGCAGATGGCCAGATGCAGCAAGTCCCTTTTCCCCCTGACGCACTCATAGGTCCTGGAATACCTCAACATGCACGGCTGATAAACACCCTCAACCACGGGGAAGTGGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGAAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGTAACAAAGCTCCTCTGTCTCAACTAGCCTGTTTAgcaagtcaacagggaaagatatgtcagcaaagagacagagactgtgttgt Alignment from Exonerate_protein2genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttggaatactctttgtcatatactgacacttctacttggtttgtagAACCTACTCCTTTCATCTGAGTGCAGATGGCCAGATGCAGCAAGTCCCTTTTCCCCCTGACGCACTCATAGGTCCTGGAATACCTCAACATGCACGGCTGATAAACACCCTCAACCACGGGGAAGTGGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGAAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGTAACAAAGCTCCTCTGTCTCAACTAGCCTGTTTAgcaagtcaacagggaaagatatgtcagcaaagagacagagactgtgttgt Alignment from Exonerate_coding2genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttggaatactctttgtcatatactgacacttctacttggtttgtagAACCTACTCCTTTCATCTGAGTGCAGATGGCCAGATGCAGCAAGTCCCTTTTCCCCCTGACGCACTCATAGGTCCTGGAATACCTCAACATGCACGGCTGATAAACACCCTCAACCACGGGGAAGTGGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGAAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGTAACAAAGCTCCTCTGTCTCAACTAGCCTGTTTAgcaagtcaacagggaaagatatgtcagcaaagagacagagactgtgttgt Alignment from GeneWise AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG---------------------------------AACAGGGATAAC tagtttggaatactctttgtcatatactgacacttctacttggtttgtagAACCTACTCCTTTCATCTGAGTGCAGATGGCCAGATGCAGCAAGTCCCTTTTCCCCCTGACGCACTCATAGGTCCTGGAATACCTCAACATGCACGGCTGATAAACACCCTCAACCACGGGGAAGTGGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGAAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGTAACAAAGCTCCTCTGTCTCAACTAGCCTGTTTAGCAAGTCAACAGGGAAAGATATGTCAGCAAAGAGACAGAGACTGTgttgt #### Tle4_ID3684_4 --> 0 - 0 Original Alignment TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG aagcatccccatcccttgattggagacatcatttgtgtttcctctctcagTATTATGAGATGTCTTATGGCTTGAACATAGAAATACATAAGCAGgtgagttcattgtaggagttcctctagactcccatctatcacatgatgtt Alignment from CESAR TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG aagcatccccatcccttgattggagacatcatttgtgtttcctctctcagTATTATGAGATGTCTTATGGCTTGAACATAGAAATACATAAGCAGgtgagttcattgtaggagttcctctagactcccatctatcacatgatgtt Alignment from Spaln_aa2Genome TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG aagcatccccatcccttgattggagacatcatttgtgtttcctctctcagTATTATGAGATGTCTTATGGCTTGAACATAGAAATACATAAGCAGgtgagttcattgtaggagttcctctagactcccatctatcacatgatgtt Alignment from Spaln_nt2Genome TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG aagcatccccatcccttgattggagacatcatttgtgtttcctctctcagTATTATGAGATGTCTTATGGCTTGAACATAGAAATACATAAGCAGgtgagttcattgtaggagttcctctagactcccatctatcacatgatgtt Alignment from Pairagon TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG aagcatccccatcccttgattggagacatcatttgtgtttcctctctcagTATTATGAGATGTCTTATGGCTTGAACATAGAAATACATAAGCAGgtgagttcattgtaggagttcctctagactcccatctatcacatgatgtt Alignment from Exonerate_protein2genome TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG aagcatccccatcccttgattggagacatcatttgtgtttcctctctcagTATTATGAGATGTCTTATGGCTTGAACATAGAAATACATAAGCAGgtgagttcattgtaggagttcctctagactcccatctatcacatgatgtt Alignment from Exonerate_coding2genome TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG aagcatccccatcccttgattggagacatcatttgtgtttcctctctcagTATTATGAGATGTCTTATGGCTTGAACATAGAAATACATAAGCAGgtgagttcattgtaggagttcctctagactcccatctatcacatgatgtt Alignment from GeneWise TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG aagcatccccatcccttgattggagacatcatttgtgtttcctctctcagTATTATGAGATGTCTTATGGCTTGAACATAGAAATACATAAGCAGgtgagttcattgtaggagttcctctagactcccatctatcacatgatgtt #### Tll2_ID8107_13 --> 0 - 1 Original Alignment ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGg cgaccccaacaggcccagtgtgataaacggtgacggtggtgtctctgcagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGggtaagcacatgcactctctcatataagacctactcctttacctaaccaag Alignment from CESAR ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGg cgaccccaacaggcccagtgtgataaacggtgacggtggtgtctctgcagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGggtaagcacatgcactctctcatataagacctactcctttacctaaccaag Alignment from Spaln_aa2Genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG cgaccccaacaggcccagtgtgataaacggtgacggtggtgtctctgcagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagacctactcctttacctaaccaag Alignment from Spaln_nt2Genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG cgaccccaacaggcccagtgtgataaacggtgacggtggtgtctctgcagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagacctactcctttacctaaccaag Alignment from Pairagon ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG cgaccccaacaggcccagtgtgataaacggtgacggtggtgtctctgcagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagacctactcctttacctaaccaag Alignment from Exonerate_protein2genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG cgaccccaacaggcccagtgtgataaacggtgacggtggtgtctctgcagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagacctactcctttacctaaccaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG cgaccccaacaggcccagtgtgataaacggtgacggtggtgtctctgcagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagacctactcctttacctaaccaag #### Tll2_ID8111_10 --> 0 - 1 Original Alignment ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGg actattgctatttaactcaagggtatctgccctttcttgctctgtcacagATCATCCTTAATTTCACCTCTATGGACCTGTCATTTAAGAGCCGTTTATGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGAAAGGCTTCATTGTTAggtatgcgtaatcagtcctcatactcttgacaaactaatgtacctagcaag Alignment from CESAR ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGg actattgctatttaactcaagggtatctgccctttcttgctctgtcacagATCATCCTTAATTTCACCTCTATGGACCTGTCATTTAAGAGCCGTTTATGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGAAAGGCTTCATTGTTAggtatgcgtaatcagtcctcatactcttgacaaactaatgtacctagcaag Alignment from Spaln_aa2Genome ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG actattgctatttaactcaagggtatctgccctttcttgctctgtcacagATCATCCTTAATTTCACCTCTATGGACCTGTCATTTAAGAGCCGTTTATGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGAAAGGCTTCATTGTTAGgtatgcgtaatcagtcctcatactcttgacaaactaatgtacctagcaag Alignment from Spaln_nt2Genome ATCATCCTAAATTTCACCTCCATGGATTTGT---TTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG actattgctatttaactcaagggtatctgccctttcttgctctgtcacagATCATCCTTAATTTCACCTCTATGGACCTGTCATTTAAGAGCCGTTTATGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGAAAGGCTTCATTGTTAGgtatgcgtaatcagtcctcatactcttgacaaactaatgtacctagcaag Alignment from Pairagon ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG actattgctatttaactcaagggtatctgccctttcttgctctgtcacagATCATCCTTAATTTCACCTCTATGGACCTGTCATTTAAGAGCCGTTTATGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGAAAGGCTTCATTGTTAGgtatgcgtaatcagtcctcatactcttgacaaactaatgtacctagcaag Alignment from Exonerate_protein2genome ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG actattgctatttaactcaagggtatctgccctttcttgctctgtcacagATCATCCTTAATTTCACCTCTATGGACCTGTCATTTAAGAGCCGTTTATGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGAAAGGCTTCATTGTTAGgtatgcgtaatcagtcctcatactcttgacaaactaatgtacctagcaag Alignment from Exonerate_coding2genome actattgctatttaactcaagggtatctgccctttcttgctctgtcacagatcatccttaatttcacctctatggacctgtcatttaagagccgtttatgctggtatgattatgtggaaatacgggatggttactggagaaaggcttcattgttaggtatgcgtaatcagtcctcatactcttgacaaactaatgtacctagcaag Alignment from GeneWise ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG actattgctatttaactcaagggtatctgccctttcttgctctgtcacagATCATCCTTAATTTCACCTCTATGGACCTGTCATTTAAGAGCCGTTTATGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGAAAGGCTTCATTGTTAGgtatgcgtaatcagtcctcatactcttgacaaactaatgtacctagcaag #### Tll2_ID8121_5 --> 2 - 2 Original Alignment gtACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTgg atccatgtccctagagccttgaattgttttatgtctcctatcccctgcaggtACACAAAGGGCCATTTTCAAGCAGGCTACGAGGCACTGGGAGGAGCACACCTGTGTAACCATTGTTGAGAGAACGCAAGAACAAAGTTTTACGGTATTCAGCTACAGGATCTGTgggtaagaagggcaatagcccagccccataggactgcctgattgtgcatgat Alignment from CESAR gtACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTgg atccatgtccctagagccttgaattgttttatgtctcctatcccctgcaggtACACAAAGGGCCATTTTCAAGCAGGCTACGAGGCACTGGGAGGAGCACACCTGTGTAACCATTGTTGAGAGAACGCAAGAACAAAGTTTTACGGTATTCAGCTACAGGATCTGTgggtaagaagggcaatagcccagccccataggactgcctgattgtgcatgat Alignment from Spaln_aa2Genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG atccatgtccctagagccttgaattgttttatgtctcctatcccctgcagGTACACAAAGGGCCATTTTCAAGCAGGCTACGAGGCACTGGGAGGAGCACACCTGTGTAACCATTGTTGAGAGAACGCAAGAACAAAGTTTTACGGTATTCAGCTACAGGATCTGTGGgtaagaagggcaatagcccagccccataggactgcctgattgtgcatgat Alignment from Spaln_nt2Genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG atccatgtccctagagccttgaattgttttatgtctcctatcccctgcagGTACACAAAGGGCCATTTTCAAGCAGGCTACGAGGCACTGGGAGGAGCACACCTGTGTAACCATTGTTGAGAGAACGCAAGAACAAAGTTTTACGGTATTCAGCTACAGGATCTGTGGgtaagaagggcaatagcccagccccataggactgcctgattgtgcatgat Alignment from Pairagon GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG atccatgtccctagagccttgaattgttttatgtctcctatcccctgcagGTACACAAAGGGCCATTTTCAAGCAGGCTACGAGGCACTGGGAGGAGCACACCTGTGTAACCATTGTTGAGAGAACGCAAGAACAAAGTTTTACGGTATTCAGCTACAGGATCTGTGGgtaagaagggcaatagcccagccccataggactgcctgattgtgcatgat Alignment from Exonerate_protein2genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG atccatgtccctagagccttgaattgttttatgtctcctatcccctgcagGTACACAAAGGGCCATTTTCAAGCAGGCTACGAGGCACTGGGAGGAGCACACCTGTGTAACCATTGTTGAGAGAACGCAAGAACAAAGTTTTACGGTATTCAGCTACAGGATCTGTGGgtaagaagggcaatagcccagccccataggactgcctgattgtgcatgat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG atccatgtccctagagccttgaattgttttatgtctcctatcccctgcagGTACACAAAGGGCCATTTTCAAGCAGGCTACGAGGCACTGGGAGGAGCACACCTGTGTAACCATTGTTGAGAGAACGCAAGAACAAAGTTTTACGGTATTCAGCTACAGGATCTGTGGgtaagaagggcaatagcccagccccataggactgcctgattgtgcatgat #### Tll2_ID8129_2 --> 2 - 1 Original Alignment ctGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTg ttttcctacaagattattagagttgtcatgtctgctgctcctgattgtagctGTCTTCTGGGGTGACATAGCTCTGGATGAAGATGACATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTggcaaggatttcttcaggtcaggcactagtgagctgcagtagtgagcggtt Alignment from CESAR ctGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTg ttttcctacaagattattagagttgtcatgtctgctgctcctgattgtagctGTCTTCTGGGGTGACATAGCTCTGGATGAAGATGACATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTggcaaggatttcttcaggtcaggcactagtgagctgcagtagtgagcggtt Alignment from Spaln_aa2Genome CTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTG ttttcctacaagattattagagttgtcatgtctgctgctcctgattgtagCTGTCTTCTGGGGTGACATAGCTCTGGATGAAGATGACATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTGgcaaggatttcttcaggtcaggcactagtgagctgcagtagtgagcggtt Alignment from Spaln_nt2Genome CTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTG ttttcctacaagattattagagttgtcatgtctgctgctcctgattgtagCTGTCTTCTGGGGTGACATAGCTCTGGATGAAGATGACATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTGgcaaggatttcttcaggtcaggcactagtgagctgcagtagtgagcggtt Alignment from Pairagon CTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTG ttttcctacaagattattagagttgtcatgtctgctgctcctgattgtagCTGTCTTCTGGGGTGACATAGCTCTGGATGAAGATGACATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTGgcaaggatttcttcaggtcaggcactagtgagctgcagtagtgagcggtt Alignment from Exonerate_protein2genome CTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTG ttttcctacaagattattagagttgtcatgtctgctgctcctgattgtagCTGTCTTCTGGGGTGACATAGCTCTGGATGAAGATGACATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTGgcaaggatttcttcaggtcaggcactagtgagctgcagtagtgagcggtt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTGGAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTC ttttcctacaagattattagagttgtcatgtctgctgctcctgattgtagCTGTCTTCTGGGGTGACATAGCTCTGGATGAAGATGACATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTGGC------AAGGATTTCTTCAGGTCAGGCACTAGTGAGCTGCAGTAgtga #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAATACCCTATTAATggtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAATACCCTATTAATggtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from Pairagon GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from Exonerate_coding2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tcccccttgatatgacctattttgtgtctaaaagcgttggttttcctcagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa Alignment from GeneWise -----------------------------------------------------GCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG TCCCCCTTGATATGACCTATTTTGTGTCTAAAAGCGTTGGTTTTCCTCAGGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAATACCCTATTAATGgtcagtctgttgtactcagcctaaatcaacttttttgaaatgaaatttaa #### Tm9sf3_ID8138_12 --> 1 - 2 Original Alignment gTACTTCATCTTCACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGCTTCATGATGCTGGTGCTGGTCATCCTGTGCATTGTGACTGTCTGTGTGACCATTGTCTGCACATACTTCCTGCTAAACGCAGAGGATTACAGGtg cctcatttttgctgcttgcatatatgtggagcctgatgcttcccttgcaggTATTTCATCTTTACTGCATTTTGGGCTTACAAAAACCACTATATCTATGGGTTCACGATGCTTGCGTTAGTCATAATCTGCATTGTGACTGTGTGTGTTACCATTCTCTGCACATATTTCTTGCTAAATACTGAAGAATACAGAtggtaagtatggatagagcattctgtctaatggcccttacctgtcttctggg Alignment from CESAR gTACTTCATCTTCACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGCTTCATGATGCTGGTGCTGGTCATCCTGTGCATTGTGACTGTCTGTGTGACCATTGTCTGCACATACTTCCTGCTAAACGCAGAGGATTACAGGtg cctcatttttgctgcttgcatatatgtggagcctgatgcttcccttgcaggTATTTCATCTTTACTGCATTTTGGGCTTACAAAAACCACTATATCTATGGGTTCACGATGCTTGCGTTAGTCATAATCTGCATTGTGACTGTGTGTGTTACCATTCTCTGCACATATTTCTTGCTAAATACTGAAGAATACAGAtggtaagtatggatagagcattctgtctaatggcccttacctgtcttctggg Alignment from Spaln_aa2Genome GTACTTCATCTTCACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGCTTCATGATGCTGGTGCTGGTCATCCTGTGCATTGTGACTGTCTGTGTGACCATTGTCTGCACATACTTCCTGCTAAACGCAGAGGATTACAGGTG cctcatttttgctgcttgcatatatgtggagcctgatgcttcccttgcagGTATTTCATCTTTACTGCATTTTGGGCTTACAAAAACCACTATATCTATGGGTTCACGATGCTTGCGTTAGTCATAATCTGCATTGTGACTGTGTGTGTTACCATTCTCTGCACATATTTCTTGCTAAATACTGAAGAATACAGATGgtaagtatggatagagcattctgtctaatggcccttacctgtcttctggg Alignment from Spaln_nt2Genome GTACTTCATCTTCACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGCTTCATGATGCTGGTGCTGGTCATCCTGTGCATTGTGACTGTCTGTGTGACCATTGTCTGCACATACTTCCTGCTAAACGCAGAGGATTACAGGTG cctcatttttgctgcttgcatatatgtggagcctgatgcttcccttgcagGTATTTCATCTTTACTGCATTTTGGGCTTACAAAAACCACTATATCTATGGGTTCACGATGCTTGCGTTAGTCATAATCTGCATTGTGACTGTGTGTGTTACCATTCTCTGCACATATTTCTTGCTAAATACTGAAGAATACAGATGgtaagtatggatagagcattctgtctaatggcccttacctgtcttctggg Alignment from Pairagon GTACTTCATCTTCACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGCTTCATGATGCTGGTGCTGGTCATCCTGTGCATTGTGACTGTCTGTGTGACCATTGTCTGCACATACTTCCTGCTAAACGCAGAGGATTACAGGTG cctcatttttgctgcttgcatatatgtggagcctgatgcttcccttgcagGTATTTCATCTTTACTGCATTTTGGGCTTACAAAAACCACTATATCTATGGGTTCACGATGCTTGCGTTAGTCATAATCTGCATTGTGACTGTGTGTGTTACCATTCTCTGCACATATTTCTTGCTAAATACTGAAGAATACAGATGgtaagtatggatagagcattctgtctaatggcccttacctgtcttctggg Alignment from Exonerate_protein2genome GTACTTCATCTTCACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGCTTCATGATGCTGGTGCTGGTCATCCTGTGCATTGTGACTGTCTGTGTGACCATTGTCTGCACATACTTCCTGCTAAACGCAGAGGATTACAGGTG cctcatttttgctgcttgcatatatgtggagcctgatgcttcccttgcagGTATTTCATCTTTACTGCATTTTGGGCTTACAAAAACCACTATATCTATGGGTTCACGATGCTTGCGTTAGTCATAATCTGCATTGTGACTGTGTGTGTTACCATTCTCTGCACATATTTCTTGCTAAATACTGAAGAATACAGATGgtaagtatggatagagcattctgtctaatggcccttacctgtcttctggg Alignment from Exonerate_coding2genome GTACTTCATCTTCACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGCTTCATGATGCTGGTGCTGGTCATCCTGTGCATTGTGACTGTCTGTGTGACCATTGTCTGCACATACTTCCTGCTAAACGCAGAGGATTACAGGTG cctcatttttgctgcttgcatatatgtggagcctgatgcttcccttgcagGTATTTCATCTTTACTGCATTTTGGGCTTACAAAAACCACTATATCTATGGGTTCACGATGCTTGCGTTAGTCATAATCTGCATTGTGACTGTGTGTGTTACCATTCTCTGCACATATTTCTTGCTAAATACTGAAGAATACAGATGgtaagtatggatagagcattctgtctaatggcccttacctgtcttctggg Alignment from GeneWise GTACTTCATCTTCACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGCTTCATGATGCTGGTGCTGGTCATCCTGTGCATTGTGACTGTCTGTGTGACCATTGTCTGCACATACTTCCTGCTAAACGCAGAGGATTACAGGTG cctcatttttgctgcttgcatatatgtggagcctgatgcttcccttgcagGTATTTCATCTTTACTGCATTTTGGGCTTACAAAAACCACTATATCTATGGGTTCACGATGCTTGCGTTAGTCATAATCTGCATTGTGACTGTGTGTGTTACCATTCTCTGCACATATTTCTTGCTAAATACTGAAGAATACAGATGgtaagtatggatagagcattctgtctaatggcccttacctgtcttctggg #### Tm9sf3_ID8148_2 --> 0 - 1 Original Alignment TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAg cagacaggtaaatttgaaattaattgtatattctcctttttggtttccagTATCAAGACAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCTAAGAAGAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAggtaatataactttggtcatgcccacatgtcttggagtctgtgttggcata Alignment from CESAR TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAg cagacaggtaaatttgaaattaattgtatattctcctttttggtttccagTATCAAGACAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCTAAGAAGAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAggtaatataactttggtcatgcccacatgtcttggagtctgtgttggcata Alignment from Spaln_aa2Genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG cagacaggtaaatttgaaattaattgtatattctcctttttggtttccagTATCAAGACAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCTAAGAAGAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtaatataactttggtcatgcccacatgtcttggagtctgtgttggcata Alignment from Spaln_nt2Genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG cagacaggtaaatttgaaattaattgtatattctcctttttggtttccagTATCAAGACAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCTAAGAAGAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtaatataactttggtcatgcccacatgtcttggagtctgtgttggcata Alignment from Pairagon TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG cagacaggtaaatttgaaattaattgtatattctcctttttggtttccagTATCAAGACAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCTAAGAAGAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGA---AGATTTTAGTGGCCTAGACATAAAATTTAAAGgtaatataactttggtcatgcccacatgtcttggagtctgtgttggcata Alignment from Exonerate_protein2genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG cagacaggtaaatttgaaattaattgtatattctcctttttggtttccagTATCAAGACAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCTAAGAAGAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtaatataactttggtcatgcccacatgtcttggagtctgtgttggcata Alignment from Exonerate_coding2genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG cagacaggtaaatttgaaattaattgtatattctcctttttggtttccagTATCAAGACAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCTAAGAAGAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtaatataactttggtcatgcccacatgtcttggagtctgtgttggcata Alignment from GeneWise TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG cagacaggtaaatttgaaattaattgtatattctcctttttggtttccagTATCAAGACAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCTAAGAAGAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtaatataactttggtcatgcccacatgtcttggagtctgtgttggcata #### Tmc1_ID4829_14 --> 0 - 0 Original Alignment GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT agattgacattcatgcaggattgcacaagacaaattttcctttttcctagGAATTTGTGTGCCTTGCTGTTTCTGACTTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGAAGTTTGGTAAGGTGTTGCAATTACTGCTGGCGCTGGGACTTAGAATATGGATATgtatgcactatatggctcaaatgatattcttccccatccaaaatacttat Alignment from CESAR GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT agattgacattcatgcaggattgcacaagacaaattttcctttttcctagGAATTTGTGTGCCTTGCTGTTTCTGACTTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGAAGTTTGGTAAGGTGTTGCAATTACTGCTGGCGCTGGGACTTAGAATATGGATATgtatgcactatatggctcaaatgatattcttccccatccaaaatacttat Alignment from Spaln_aa2Genome GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT agattgacattcatgcaggattgcacaagacaaattttcctttttcctagGAATTTGTGTGCCTTGCTGTTTCTGACTTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGAAGTTTGGTAAGGTGTTGCAATTACTGCTGGCGCTGGGACTTAGAATATGGATATgtatgcactatatggctcaaatgatattcttccccatccaaaatacttat Alignment from Spaln_nt2Genome GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT agattgacattcatgcaggattgcacaagacaaattttcctttttcctagGAATTTGTGTGCCTTGCTGTTTCTGACTTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGAAGTTTGGTAAGGTGTTGCAATTACTGCTGGCGCTGGGACTTAGAATATGGATATgtatgcactatatggctcaaatgatattcttccccatccaaaatacttat Alignment from Pairagon GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT agattgacattcatgcaggattgcacaagacaaattttcctttttcctagGAATTTGTGTGCCTTGCTGTTTCTGACTTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGAAGTTTGGTAAGGTGTTGCAATTACTGCTGGCGCTGGGACTTAGAATATGGATATgtatgcactatatggctcaaatgatattcttccccatccaaaatacttat Alignment from Exonerate_protein2genome GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT agattgacattcatgcaggattgcacaagacaaattttcctttttcctagGAATTTGTGTGCCTTGCTGTTTCTGACTTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGAAGTTTGGTAAGGTGTTGCAATTACTGCTGGCGCTGGGACTTAGAATATGGATATgtatgcactatatggctcaaatgatattcttccccatccaaaatacttat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT agattgacattcatgcaggattgcacaagacaaattttcctttttcctagGAATTTGTGTGCCTTGCTGTTTCTGACTTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGAAGTTTGGTAAGGTGTTGCAATTACTGCTGGCGCTGGGACTTAGAATATGGATATgtatgcactatatggctcaaatgatattcttccccatccaaaatacttat #### Tmc1_ID4835_8 --> 0 - 0 Original Alignment TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT tggtgctcgcatggagcttgcaggtgctccacaatctgcttcacccccagTACTTGTGGGGTCTCCCATACGGCAGCTCACCTAGAAAAACGAGTCCAAGAGCAGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtaggtctcctatactacctttcataaggaacctgttgtgggtcaaacag Alignment from CESAR TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT tggtgctcgcatggagcttgcaggtgctccacaatctgcttcacccccagTACTTGTGGGGTCTCCCATACGGCAGCTCACCTAGAAAAACGAGTCCAAGAGCAGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtaggtctcctatactacctttcataaggaacctgttgtgggtcaaacag Alignment from Spaln_aa2Genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT tggtgctcgcatggagcttgcaggtgctccacaatctgcttcacccccagTACTTGTGGGGTCTCCCATACGGCAGCTCACCTAGAAAAACGAGTCCAAGAGCAGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtaggtctcctatactacctttcataaggaacctgttgtgggtcaaacag Alignment from Spaln_nt2Genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT tggtgctcgcatggagcttgcaggtgctccacaatctgcttcacccccagTACTTGTGGGGTCTCCCATACGGCAGCTCACCTAGAAAAACGAGTCCAAGAGCAGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtaggtctcctatactacctttcataaggaacctgttgtgggtcaaacag Alignment from Pairagon TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT tggtgctcgcatggagcttgcaggtgctccacaatctgcttcacccccagTACTTGTGGGGTCTCCCATACGGCAGCTCACCTAGAAAAACGAGTCCAAGAGCAGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtaggtctcctatactacctttcataaggaacctgttgtgggtcaaacag Alignment from Exonerate_protein2genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT tggtgctcgcatggagcttgcaggtgctccacaatctgcttcacccccagTACTTGTGGGGTCTCCCATACGGCAGCTCACCTAGAAAAACGAGTCCAAGAGCAGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtaggtctcctatactacctttcataaggaacctgttgtgggtcaaacag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT tggtgctcgcatggagcttgcaggtgctccacaatctgcttcacccccagTACTTGTGGGGTCTCCCATACGGCAGCTCACCTAGAAAAACGAGTCCAAGAGCAGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtaggtctcctatactacctttcataaggaacctgttgtgggtcaaacag #### Tmc1_ID4840_5 --> 1 - 0 Original Alignment gGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tggtgcatacaacacaactttgtccaactgcctgcctctttgttccccagaGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAGGATAATGATGGCCAAGgtagtggtgtactctccactggaacttaaaggtaaattgtactggcggta Alignment from CESAR gGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tggtgcatacaacacaactttgtccaactgcctgcctctttgttccccagaGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAGGATAATGATGGCCAAGgtagtggtgtactctccactggaacttaaaggtaaattgtactggcggta Alignment from Spaln_aa2Genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tggtgcatacaacacaactttgtccaactgcctgcctctttgttccccagAGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAGGATAATGATGGCCAAGgtagtggtgtactctccactggaacttaaaggtaaattgtactggcggta Alignment from Spaln_nt2Genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tggtgcatacaacacaactttgtccaactgcctgcctctttgttccccagAGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAGGATAATGATGGCCAAGgtagtggtgtactctccactggaacttaaaggtaaattgtactggcggta Alignment from Pairagon GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tggtgcatacaacacaactttgtccaactgcctgcctctttgttccccagAGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAGGATAATGATGGCCAAGgtagtggtgtactctccactggaacttaaaggtaaattgtactggcggta Alignment from Exonerate_protein2genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tggtgcatacaacacaactttgtccaactgcctgcctctttgttccccagAGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAGGATAATGATGGCCAAGgtagtggtgtactctccactggaacttaaaggtaaattgtactggcggta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tggtgcatacaacacaactttgtccaactgcctgcctctttgttccccagAGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAGGATAATGATGGCCAAGgtagtggtgtactctccactggaacttaaaggtaaattgtactggcggta #### Tmc1_ID4846_3 --> 2 - 2 Original Alignment gtGAAGAAGAAGAAGATAAGCTACCCAGAAGAGAGAGCTTGAGACCAAAGAGGAAACGGACCAGAGATGTCATCAATGAGGATGACCCAGAACCGGAGCCGGAGGATGAAGAAACAAGAAAGGCA---------------AGAGAAAAAGAAAGGCGGAGGAGGCTGCGGAGAGGAgc ctgcaaacttccaattgtcaactgctaggtgcctttgatgctctttccaggtAAGGAAGAAGATGATAAGTTACCCAGACAGGAGAGTTTGAGACCAAAGAGGAGACCAATCAGGGATGTT---GATGAGGAGGATCCAGAA---CAGCCAGAGGAAGAAGAAACTAGAAAATTAAGACAAAAAACACTAAGACAAAAG---ACA---CGGAGGCTCCATCGAGGGgtgtgagttacgcctggaattatttacagtaactcaatactcaatgtatcac Alignment from CESAR gtGAAGAAGAAGAAGATAAGCTACCCAGAAGAGAGAGCTTGAGACCAAAGAGGAAACGGACCAGAGATGTCATCAATGAGGATGACCCAGAACCGGAGCCGGAGGATGAAGAAACAAGAAAGGCAAGAGAAAAA---------GAAAGGCGGAGGAGGCTGCGGAGAGGAgc ctgcaaacttccaattgtcaactgctaggtgcctttgatgctctttccaggtAAGGAAGAAGATGATAAGTTACCCAGACAGGAGAGTTTGAGACCAAAGAGGAGACCAATCAGGGATGTT---GATGAGGAGGATCCAGAACAG---CCAGAGGAAGAAGAAACTAGAAAATTAAGACAAAAAACACTAAGACAAAAGACACGGAGGCTCCATCGAGGGgtgtgagttacgcctggaattatttacagtaactcaatactcaatgtatcac Alignment from Spaln_aa2Genome GTGAAGAAGAAGAAGATAAGCTACCCAGAAGAGAGAGCTTGAGACCAAAGAGGAAACGGACCAGAGATGTCATCAATGAGGATGACCCAGAACCGGAGCCGGAGGATGAAGAAACAAGAAAGGCAAGAGAAAAA---------GAAAGGCGGAGGAGGCTGCGGAGAGGAGC ctgcaaacttccaattgtcaactgctaggtgcctttgatgctctttccagGTAAGGAAGAAGATGATAAGTTACCCAGACAGGAGAGTTTGAGACCAAAGAGGAGACCAATCAGGGATGTT---GATGAGGAGGATCCAGAA---CAGCCAGAGGAAGAAGAAACTAGAAAATTAAGACAAAAAACACTAAGACAAAAGACACGGAGGCTCCATCGAGGGGTgtgagttacgcctggaattatttacagtaactcaatactcaatgtatcac Alignment from Spaln_nt2Genome GTGAAGAAGAAGAAGATAAGCTACCCAGAAGAGAGAGCTTGAGACCAAAGAGGAAACGGACCAGAGATGTCATCAATGAGGATGACCCAGAACCGGAGCCGGAGGATGAAGAAACAAGAAAGGCAAGAGAAAAAG---------AAAGGCGGAGGAGGCTGCGGAGAGGAGC ctgcaaacttccaattgtcaactgctaggtgcctttgatgctctttccagGTAAGGAAGAAGATGATAAGTTACCCAGACAGGAGAGTTTGAGACCAAAGAGGAGACCAATCAGGGATG---TTGATGAGGAGGATCCAGAAC---AGCCAGAGGAAGAAGAAACTAGAAAATTAAGACAAAAAACACTAAGACAAAAGACACGGAGGCTCCATCGAGGGGTgtgagttacgcctggaattatttacagtaactcaatactcaatgtatcac Alignment from Pairagon GTGAAGAAGAAGAAGATAAGCTACCCAGAAGAGAGAGCTTGAGACCAAAGAGGAAACGGACCAGAGATGTCATCAATGAGGATGACCCAGAACCGGAGCCGGAGGATGAAGAAACAAGAAAGGCAAGAGAAAAA-------------------------------GAAAGGC ctgcaaacttccaattgtcaactgctaggtgcctttgatgctctttccagGTAAGGAAGAAGATGATAAGTTACCCAGACAGGAGAGTTTGAGACCAAAGAGGAGACCAATCAGGGATG---TTGATGAGGAGGATCCAGAAC---AGCCAGAGGAAGAAGAAACTAGAAAATTAAGACAAAAAACACTAAGACAAAAGACACGGAGGCTCCATCGAGGGGTgtgagttacgcctggaattatttacagtaactcaatactcaatgtatcac Alignment from Exonerate_protein2genome GTGAAGAAGAAGAAGATAAGCTACCCAGAAGAGAGAGCTTGAGACCAAAGAGGAAACGGACCAGAGATGTCATCAATGAGGATGACCCAGAACCGGAGCCGGAGGAT---GAAGAAACAAGAAAGGCAAGAGAAAAAGAAAGGCGGAGGAGGCTGCGGAGAGGAGC ctgcaaacttccaattgtcaactgctaggtgcctttgatgctctttccagGTAAGGAAGAAGATGATAAGTTACCCAGACAGGAGAGTTTGAGACCAAAGAGGAGACCAATCAGGGATGTTGATGAGGAGGATCCAGAACAGCCAGAGGAAGAAGAAACTAGAAAATTAAGACAAAAAACACTAAGACAAAAGACACGGAGGCTCCATCGAGGGGTgtgagttacgcctggaattatttacagtaactcaatactcaatgtatcac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGAAGAAGAAGAAGATAAGCTACCCAGAAGAGAGAGCTTGAGACCAAAGAGGAAACGGACCAGAGATGTCATCAATGAGGATGACCCAGAACCGGAGCCGGAGGATGAAGAAACAAGAAAGGCAAGAGAAAAA---------GAAAGGCGGAGGAGGCTGCGGAGAGGAGC ctgcaaacttccaattgtcaactgctaggtgcctttgatgctctttccagGTAAGGAAGAAGATGATAAGTTACCCAGACAGGAGAGTTTGAGACCAAAGAGGAGACCAATCAGGGATGTT---GATGAGGAGGATCCAGAA---CAGCCAGAGGAAGAAGAAACTAGAAAATTAAGACAAAAAACACTAAGACAAAAGACACGGAGGCTCCATCGAGGGGTgtgagttacgcctggaattatttacagtaactcaatactcaatgtatcac #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagcCGCTCTGAAGCACAGAAGACTGCATGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagcCGCTCTGAAGCACAGAAGACTGCATGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from Pairagon CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA cctctcttcctcattagtattacacttatctcttgcccctccccccacagCCGCTCTGAAGCACAGAAGACTGCATGGACACCTTTGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtagtgtgcaagcattgataaggagacaccaatatggctctgtgctccta #### Tmem180_ID9861_3 --> 1 - 2 Original Alignment gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcataggAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTTTGCTAGCTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTgggtaagacactacttcagctcaagctcccatggccaatacaactatgatag Alignment from CESAR gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcataggAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTTTGCTAGCTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTgggtaagacactacttcagctcaagctcccatggccaatacaactatgatcc Alignment from Spaln_aa2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTTTGCTAGCTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatag Alignment from Spaln_nt2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTTTGCTAGCTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatag Alignment from Pairagon GGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcataggaagGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTTTGCTAGCTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatag Alignment from Exonerate_protein2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTTTGCTAGCTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatag Alignment from Exonerate_coding2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTTTGCTAGCTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatag Alignment from GeneWise GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggtatgcctagtgtgtaggagtcccttactctctgttcttggttgcatagGAAGGGAGCAGGGCTCTCCTCTAGGGATGTGGTGCTAACTCGTGTGCGGTCCCTAGGCTGGCATGGTCAACTGTGGGCATTGGCATTCCTTGCGTATTGGGTATCTTGGGCACCTGCTGGACTACAATTCTTCTTGTGCCTTTGCCTCTATGATAGCCTCCTGACCCTGGTGGACCTCCACCATCACACTTTGCTAGCTGACCTGGCACTGTCATCCCGTGATCACACTCACCTCAATTTCGATTGCTCCCTTTTCAGTGCAGCTGGTTCGTTATCTGTCTTTGCCTCTCATGCCTTTTGGAACAAGGAGGATTTCACCTCATTCCTGGCATTTTGTGTAGTGCTTGCCGCTGGATCTGGACTGGGCTTCCTTGGCACCACACAATTATTAAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGTTTGGATCTAGATGGTGGgtaagacactacttcagctcaagctcccatggccaatacaactatgatag #### Tmem180_ID9863_5 --> 0 - 1 Original Alignment GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGg cttccactcttgtgcaaatcttccccacaccctacttgattcatttctagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTGTTCTTGGAACATTTGCTGTCTGATCACATTTCCCTGTTGACTGGCACATTTCTCCTGggtgagttgttaccctgtaatgacatcagaatctcccattagcttggtctt Alignment from CESAR GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGg cttccactcttgtgcaaatcttccccacaccctacttgattcatttctagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTGTTCTTGGAACATTTGCTGTCTGATCACATTTCCCTGTTGACTGGCACATTTCTCCTGggtgagttgttaccctgtaatgacatcagaatctcccattagcttggtctt Alignment from Spaln_aa2Genome GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cttccactcttgtgcaaatcttccccacaccctacttgattcatttctagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTGTTCTTGGAACATTTGCTGTCTGATCACATTTCCCTGTTGACTGGCACATTTCTCCTGGgtgagttgttaccctgtaatgacatcagaatctcccattagcttggtctt Alignment from Spaln_nt2Genome GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cttccactcttgtgcaaatcttccccacaccctacttgattcatttctagGTGTT---CTGCCACTTTAAC---AACTTCTTCCCTCTGTTCTTGGAACATTTGCTGTCTGATCACATTTCCCTGTTGACTGGCACATTTCTCCTGGgtgagttgttaccctgtaatgacatcagaatctcccattagcttggtctt Alignment from Pairagon GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cttccactcttgtgcaaatcttccccacaccctacttgattcatttctagGTGTT---CTGCCACTTTAAC---AACTTCTTCCCTCTGTTCTTGGAACATTTGCTGTCTGATCACATTTCCCTGTTGACTGGCACATTTCTCCTGGgtgagttgttaccctgtaatgacatcagaatctcccattagcttggtctt Alignment from Exonerate_protein2genome GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cttccactcttgtgcaaatcttccccacaccctacttgattcatttctagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTGTTCTTGGAACATTTGCTGTCTGATCACATTTCCCTGTTGACTGGCACATTTCTCCTGGgtgagttgttaccctgtaatgacatcagaatctcccattagcttggtctt Alignment from Exonerate_coding2genome cttccactcttgtgcaaatcttccccacaccctacttgattcatttctaggtgttctgccactttaacaacttcttccctctgttcttggaacatttgctgtctgatcacatttccctgttgactggcacatttctcctgggtgagttgttaccctgtaatgacatcagaatctcccattagcttggtctt Alignment from GeneWise GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cttccactcttgtgcaaatcttccccacaccctacttgattcatttctagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTGTTCTTGGAACATTTGCTGTCTGATCACATTTCCCTGTTGACTGGCACATTTCTCCTGGgtgagttgttaccctgtaatgacatcagaatctcccattagcttggtctt #### Tmem2_ID4945_7 --> 0 - 0 Original Alignment ATAGAGAAGAATTTTACTTCAGTCCATCTTTCTTATGTGGAATTGAAACACATGGGCCAGCAGCATATGGGCCGGTATCCTGTGCATTTTCACCTGTGTGGAGATGTAGATTCTAAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGCCTGTCTGTTCATCACAGCTTTTCAAGGTGCATCACCGTGCACGGGACCAGTGGCTTGCTA attctttcttgtgtgcatcatattcttcacagattctttctctcaaacagGTAGAAAAAAATTTTATGTCTGTGCATCTTTTGTATGTGGAATTGAGACATATGGGTCAGCAGCACACAGGCCGATATCCTGTGCATTTCCACTTAGGTGGGGATGTGGATTCTAAAGGGGGATATGGCCAGCCAGCATCTGTGGATGGATTGTCTGTCCATCACAGCTTCTCAAGGTGCATTACTGTGCATGGGGCTAGTGGTTTACTAgtgagtaattgttaatcctagggtaaaaaggtagtcatatttatctcacg Alignment from CESAR ATAGAGAAGAATTTTACTTCAGTCCATCTTTCTTATGTGGAATTGAAACACATGGGCCAGCAGCATATGGGCCGGTATCCTGTGCATTTTCACCTGTGTGGAGATGTAGATTCTAAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGCCTGTCTGTTCATCACAGCTTTTCAAGGTGCATCACCGTGCACGGGACCAGTGGCTTGCTA attctttcttgtgtgcatcatattcttcacagattctttctctcaaacagGTAGAAAAAAATTTTATGTCTGTGCATCTTTTGTATGTGGAATTGAGACATATGGGTCAGCAGCACACAGGCCGATATCCTGTGCATTTCCACTTAGGTGGGGATGTGGATTCTAAAGGGGGATATGGCCAGCCAGCATCTGTGGATGGATTGTCTGTCCATCACAGCTTCTCAAGGTGCATTACTGTGCATGGGGCTAGTGGTTTACTAgtgagtaattgttaatcctagggtaaaaaggtagtcatatttatctcacg Alignment from Spaln_aa2Genome ATAGAGAAGAATTTTACTTCAGTCCATCTTTCTTATGTGGAATTGAAACACATGGGCCAGCAGCATATGGGCCGGTATCCTGTGCATTTTCACCTGTGTGGAGATGTAGATTCTAAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGCCTGTCTGTTCATCACAGCTTTTCAAGGTGCATCACCGTGCACGGGACCAGTGGCTTGCTA attctttcttgtgtgcatcatattcttcacagattctttctctcaaacagGTAGAAAAAAATTTTATGTCTGTGCATCTTTTGTATGTGGAATTGAGACATATGGGTCAGCAGCACACAGGCCGATATCCTGTGCATTTCCACTTAGGTGGGGATGTGGATTCTAAAGGGGGATATGGCCAGCCAGCATCTGTGGATGGATTGTCTGTCCATCACAGCTTCTCAAGGTGCATTACTGTGCATGGGGCTAGTGGTTTACTAgtgagtaattgttaatcctagggtaaaaaggtagtcatatttatctcacg Alignment from Spaln_nt2Genome ATAGAGAAGAATTTTACTTCAGTCCATCTTTCTTATGTGGAATTGAAACACATGGGCCAGCAGCATATGGGCCGGTATCCTGTGCATTTTCACCTGTGTGGAGATGTAGATTCTAAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGCCTGTCTGTTCATCACAGCTTTTCAAGGTGCATCACCGTGCACGGGACCAGTGGCTTGCTA attctttcttgtgtgcatcatattcttcacagattctttctctcaaacagGTAGAAAAAAATTTTATGTCTGTGCATCTTTTGTATGTGGAATTGAGACATATGGGTCAGCAGCACACAGGCCGATATCCTGTGCATTTCCACTTAGGTGGGGATGTGGATTCTAAAGGGGGATATGGCCAGCCAGCATCTGTGGATGGATTGTCTGTCCATCACAGCTTCTCAAGGTGCATTACTGTGCATGGGGCTAGTGGTTTACTAgtgagtaattgttaatcctagggtaaaaaggtagtcatatttatctcacg Alignment from Pairagon ATAGAGAAGAATTTTACTTCAGTCCATCTTTCTTATGTGGAATTGAAACACATGGGCCAGCAGCATATGGGCCGGTATCCTGTGCATTTTCACCTGTGTGGAGATGTAGATTCTAAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGCCTGTCTGTTCATCACAGCTTTTCAAGGTGCATCACCGTGCACGGGACCAGTGGCTTGCTA attctttcttgtgtgcatcatattcttcacagattctttctctcaaacagGTAGAAAAAAATTTTATGTCTGTGCATCTTTTGTATGTGGAATTGAGACATATGGGTCAGCAGCACACAGGCCGATATCCTGTGCATTTCCACTTAGGTGGGGATGTGGATTCTAAAGGGGGATATGGCCAGCCAGCATCTGTGGATGGATTGTCTGTCCATCACAGCTTCTCAAGGTGCATTACTGTGCATGGGGCTAGTGGTTTACTAgtgagtaattgttaatcctagggtaaaaaggtagtcatatttatctcacg Alignment from Exonerate_protein2genome ATAGAGAAGAATTTTACTTCAGTCCATCTTTCTTATGTGGAATTGAAACACATGGGCCAGCAGCATATGGGCCGGTATCCTGTGCATTTTCACCTGTGTGGAGATGTAGATTCTAAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGCCTGTCTGTTCATCACAGCTTTTCAAGGTGCATCACCGTGCACGGGACCAGTGGCTTGCTA attctttcttgtgtgcatcatattcttcacagattctttctctcaaacagGTAGAAAAAAATTTTATGTCTGTGCATCTTTTGTATGTGGAATTGAGACATATGGGTCAGCAGCACACAGGCCGATATCCTGTGCATTTCCACTTAGGTGGGGATGTGGATTCTAAAGGGGGATATGGCCAGCCAGCATCTGTGGATGGATTGTCTGTCCATCACAGCTTCTCAAGGTGCATTACTGTGCATGGGGCTAGTGGTTTACTAgtgagtaattgttaatcctagggtaaaaaggtagtcatatttatctcacg Alignment from Exonerate_coding2genome ATAGAGAAGAATTTTACTTCAGTCCATCTTTCTTATGTGGAATTGAAACACATGGGCCAGCAGCATATGGGCCGGTATCCTGTGCATTTTCACCTGTGTGGAGATGTAGATTCTAAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGCCTGTCTGTTCATCACAGCTTTTCAAGGTGCATCACCGTGCACGGGACCAGTGGCTTGCTA attctttcttgtgtgcatcatattcttcacagattctttctctcaaacagGTAGAAAAAAATTTTATGTCTGTGCATCTTTTGTATGTGGAATTGAGACATATGGGTCAGCAGCACACAGGCCGATATCCTGTGCATTTCCACTTAGGTGGGGATGTGGATTCTAAAGGGGGATATGGCCAGCCAGCATCTGTGGATGGATTGTCTGTCCATCACAGCTTCTCAAGGTGCATTACTGTGCATGGGGCTAGTGGTTTACTAgtgagtaattgttaatcctagggtaaaaaggtagtcatatttatctcacg Alignment from GeneWise ATAGAGAAGAATTTTACTTCAGTCCATCTTTCTTATGTGGAATTGAAACACATGGGCCAGCAGCATATGGGCCGGTATCCTGTGCATTTTCACCTGTGTGGAGATGTAGATTCTAAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGCCTGTCTGTTCATCACAGCTTTTCAAGGTGCATCACCGTGCACGGGACCAGTGGCTTGCTAATCAAAGACA attctttcttgtgtgcatcatattcttcacagattctttctctcaaacagGTAGAAAAAAATTTTATGTCTGTGCATCTTTTGTATGTGGAATTGAGACATATGGGTCAGCAGCACACAGGCCGATATCCTGTGCATTTCCACTTAGGTGGGGATGTGGATTCTAAAGGGGGATATGGCCAGCCAGCATCTGTGGATGGATTGTCTGTCCATCACAGCTTCTCAAGGTGCATTACTGTGCATGGGGCTAGTGGTTTACTAGTGAGTAATTgttaatcctagggtaaaaaggtagtcatatttatctcacg #### Tmem2_ID4946_8 --> 0 - 2 Original Alignment ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTG---CCTACCACAGACTGCat taaagctaatccactacctatgtaagtatgttatctttccttggacacagATCAAA---GCTATTAGCCTTGACACATTAGGCCATTGTGTATTTGTAGAAGATGGTGTTGAACAGCGCAATATACTGTTTCATAATTTGGGGTTTCTTACTCGGCCC---ACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAAGTGTATTCGGAAACTATATCCCTGTTCAAGCAACAACAGATTGCatgtaagcgacaagaggtcgctttgcagataatctgtcacttggagtggttc Alignment from CESAR ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTG---CCTACCACAGACTGCat taaagctaatccactacctatgtaagtatgttatctttccttggacacagATCAAA---GCTATTAGCCTTGACACATTAGGCCATTGTGTATTTGTAGAAGATGGTGTTGAACAGCGCAATATACTGTTTCATAATTTGGGGTTTCTTACTCGGCCC---ACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAAGTGTATTCGGAAACTATATCCCTGTTCAAGCAACAACAGATTGCatgtaagcgacaagaggtcgctttgcagataatctgtcacttggagtggttc Alignment from Spaln_aa2Genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTG---CCTACCACAGACTGCAT taaagctaatccactacctatgtaagtatgttatctttccttggacacagATCAAA---GCTATTAGCCTTGACACATTAGGCCATTGTGTATTTGTAGAAGATGGTGTTGAACAGCGCAATATACTGTTTCATAATTTGGGGTTTCTTACTCGGCCC---ACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAAGTGTATTCGGAAACTATATCCCTGTTCAAGCAACAACAGATTGCATgtaagcgacaagaggtcgctttgcagataatctgtcacttggagtggttc Alignment from Spaln_nt2Genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGC---CTACCACAGACTGCAT taaagctaatccactacctatgtaagtatgttatctttccttggacacagATCAAAG---CTATTAGCCTTGACACATTAGGCCATTGTGTATTTGTAGAAGATGGTGTTGAACAGCGCAATATACTGTTTCATAATTTGGGGTTTCTTACTCGGCC---CACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAAGTGTATTCGGAAACTATATCCCTGTTCAAGCAACAACAGATTGCATgtaagcgacaagaggtcgctttgcagataatctgtcacttggagtggttc Alignment from Pairagon ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGC---CTACCACAGACTGCAT taaagctaatccactacctatgtaagtatgttatctttccttggacacagATCAAAG---CTATTAGCCTTGACACATTAGGCCATTGTGTATTTGTAGAAGATGGTGTTGAACAGCGCAATATACTGTTTCATAATTTGGGGTTTCTTACTCGGCC---CACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAAGTGTATTCGGAAACTATATCCCTGTTCAAGCAACAACAGATTGCATgtaagcgacaagaggtcgctttgcagataatctgtcacttggagtggttc Alignment from Exonerate_protein2genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTG---CCTACCACAGACTGCAT taaagctaatccactacctatgtaagtatgttatctttccttggacacagATCAAA---GCTATTAGCCTTGACACATTAGGCCATTGTGTATTTGTAGAAGATGGTGTTGAACAGCGCAATATACTGTTTCATAATTTGGGGTTTCTTACTCGGCCC---ACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAAGTGTATTCGGAAACTATATCCCTGTTCAAGCAACAACAGATTGCATgtaagcgacaagaggtcgctttgcagataatctgtcacttggagtggttc Alignment from Exonerate_coding2genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTG---CCTACCACAGACTGCAT taaagctaatccactacctatgtaagtatgttatctttccttggacacagATCAAA---GCTATTAGCCTTGACACATTAGGCCATTGTGTATTTGTAGAAGATGGTGTTGAACAGCGCAATATACTGTTTCATAATTTGGGGTTTCTTACTCGGCCC---ACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAAGTGTATTCGGAAACTATATCCCTGTTCAAGCAACAACAGATTGCATgtaagcgacaagaggtcgctttgcagataatctgtcacttggagtggttc Alignment from GeneWise CCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCT---ACCACAGACTGCAT taaagctaatccactacctatgtaagtatgttatctttccttggacacagatcaaagCTATTAGCCTTGACACATTAGGCCATTGTGTATTTGTAGAAGATGGTGTTGAACAGCGCAATATACTGTTTCATAATTTGGGGTTTCTTACTCGGCCC---ACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAAGTGTATTCGGAAACTATATCCCTGTTCAAGCAACAACAGATTGCATgtaagcgacaagaggtcgctttgcagataatctgtcacttggagtggttc #### Tmem2_ID4949_10 --> 0 - 0 Original Alignment GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG ttacagtgtggtgggaggcacttccttagtgtgggtcttgccccttgcagGATGTAGGAATCTGGTATTTATTCCACAAAGGGCCAACTGGAGAAGCAAGTGGGCTGCAACTCTTAGAGAAGCCGGAGCTTACTCCAGTAGGTATCTTCTACAACAACAGGGTTCATGCAAACTTCAAAgtgagtcttagaccccaacatctaaatggtctgccttccacaatctgact Alignment from CESAR GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG ttacagtgtggtgggaggcacttccttagtgtgggtcttgccccttgcagGATGTAGGAATCTGGTATTTATTCCACAAAGGGCCAACTGGAGAAGCAAGTGGGCTGCAACTCTTAGAGAAGCCGGAGCTTACTCCAGTAGGTATCTTCTACAACAACAGGGTTCATGCAAACTTCAAAgtgagtcttagaccccaacatctaaatggtctgccttccacaatctgact Alignment from Spaln_aa2Genome GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG ttacagtgtggtgggaggcacttccttagtgtgggtcttgccccttgcagGATGTAGGAATCTGGTATTTATTCCACAAAGGGCCAACTGGAGAAGCAAGTGGGCTGCAACTCTTAGAGAAGCCGGAGCTTACTCCAGTAGGTATCTTCTACAACAACAGGGTTCATGCAAACTTCAAAgtgagtcttagaccccaacatctaaatggtctgccttccacaatctgact Alignment from Spaln_nt2Genome GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG ttacagtgtggtgggaggcacttccttagtgtgggtcttgccccttgcagGATGTAGGAATCTGGTATTTATTCCACAAAGGGCCAACTGGAGAAGCAAGTGGGCTGCAACTCTTAGAGAAGCCGGAGCTTACTCCAGTAGGTATCTTCTACAACAACAGGGTTCATGCAAACTTCAAAgtgagtcttagaccccaacatctaaatggtctgccttccacaatctgact Alignment from Pairagon GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG ttacagtgtggtgggaggcacttccttagtgtgggtcttgccccttgcagGATGTAGGAATCTGGTATTTATTCCACAAAGGGCCAACTGGAGAAGCAAGTGGGCTGCAACTCTTAGAGAAGCCGGAGCTTACTCCAGTAGGTATCTTCTACAACAACAGGGTTCATGCAAACTTCAAAgtgagtcttagaccccaacatctaaatggtctgccttccacaatctgact Alignment from Exonerate_protein2genome GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG ttacagtgtggtgggaggcacttccttagtgtgggtcttgccccttgcagGATGTAGGAATCTGGTATTTATTCCACAAAGGGCCAACTGGAGAAGCAAGTGGGCTGCAACTCTTAGAGAAGCCGGAGCTTACTCCAGTAGGTATCTTCTACAACAACAGGGTTCATGCAAACTTCAAAgtgagtcttagaccccaacatctaaatggtctgccttccacaatctgact Alignment from Exonerate_coding2genome GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG ttacagtgtggtgggaggcacttccttagtgtgggtcttgccccttgcagGATGTAGGAATCTGGTATTTATTCCACAAAGGGCCAACTGGAGAAGCAAGTGGGCTGCAACTCTTAGAGAAGCCGGAGCTTACTCCAGTAGGTATCTTCTACAACAACAGGGTTCATGCAAACTTCAAAgtgagtcttagaccccaacatctaaatggtctgccttccacaatctgact Alignment from GeneWise GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG ttacagtgtggtgggaggcacttccttagtgtgggtcttgccccttgcagGATGTAGGAATCTGGTATTTATTCCACAAAGGGCCAACTGGAGAAGCAAGTGGGCTGCAACTCTTAGAGAAGCCGGAGCTTACTCCAGTAGGTATCTTCTACAACAACAGGGTTCATGCAAACTTCAAAgtgagtcttagaccccaacatctaaatggtctgccttccacaatctgact #### Tmem2_ID4950_11 --> 0 - 2 Original Alignment GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAag caaaatagggcttctggattgagccatgtgctctttctcttcctgaatagGCAGGGCTATTTGTAGACAAAGGTGTGAAAAAAACTAATGCCTCGGCATCTGATCCAAGGGAGTATCTTTGTCTAGATAACAGTGCCaggtagggctaaactcaaagcaacactggagcgtcaagacacaaaatcctgg Alignment from CESAR GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAag caaaatagggcttctggattgagccatgtgctctttctcttcctgaatagGCAGGGCTATTTGTAGACAAAGGTGTGAAAAAAACTAATGCCTCGGCATCTGATCCAAGGGAGTATCTTTGTCTAGATAACAGTGCCaggtagggctaaactcaaagcaacactggagcgtcaagacacaaaatcctgg Alignment from Spaln_aa2Genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG caaaatagggcttctggattgagccatgtgctctttctcttcctgaatagGCAGGGCTATTTGTAGACAAAGGTGTGAAAAAAACTAATGCCTCGGCATCTGATCCAAGGGAGTATCTTTGTCTAGATAACAGTGCCAGgtagggctaaactcaaagcaacactggagcgtcaagacacaaaatcctgg Alignment from Spaln_nt2Genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG caaaatagggcttctggattgagccatgtgctctttctcttcctgaatagGCAGGGCTATTTGTAGACAAAGGTGTGAAAAAAACTAATGCCTCGGCATCTGATCCAAGGGAGTATCTTTGTCTAGATAACAGTGCCAGgtagggctaaactcaaagcaacactggagcgtcaagacacaaaatcctgg Alignment from Pairagon GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG caaaatagggcttctggattgagccatgtgctctttctcttcctgaatagGCAGGGCTATTTGTAGACAAAGGTGTGAAAAAAACTAATGCCTCGGCATCTGATCCAAGGGAGTATCTTTGTCTAGATAACAGTGCCAGgtagggctaaactcaaagcaacactggagcgtcaagacacaaaatcctgg Alignment from Exonerate_protein2genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG caaaatagggcttctggattgagccatgtgctctttctcttcctgaatagGCAGGGCTATTTGTAGACAAAGGTGTGAAAAAAACTAATGCCTCGGCATCTGATCCAAGGGAGTATCTTTGTCTAGATAACAGTGCCAGgtagggctaaactcaaagcaacactggagcgtcaagacacaaaatcctgg Alignment from Exonerate_coding2genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG caaaatagggcttctggattgagccatgtgctctttctcttcctgaatagGCAGGGCTATTTGTAGACAAAGGTGTGAAAAAAACTAATGCCTCGGCATCTGATCCAAGGGAGTATCTTTGTCTAGATAACAGTGCCAGgtagggctaaactcaaagcaacactggagcgtcaagacacaaaatcctgg Alignment from GeneWise GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG caaaatagggcttctggattgagccatgtgctctttctcttcctgaatagGCAGGGCTATTTGTAGACAAAGGTGTGAAAAAAACTAATGCCTCGGCATCTGATCCAAGGGAGTATCTTTGTCTAGATAACAGTGCCAGgtagggctaaactcaaagcaacactggagcgtcaagacacaaaatcctgg #### Tmem2_ID4953_14 --> 1 - 2 Original Alignment tGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACag tgggtggtgggcacttttgaacacttatcttttgggttacatttcttcagtGATGGGAGTTTCGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTGTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCATAACAAGTACATGGGCTCAGGTGGAATTGACCAAAAACCTCGCAGTCTACCCAGAAATaggtaatttgtgtgttggtagtggagttattgacctctagttcacctttctt Alignment from CESAR tGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACag tgggtggtgggcacttttgaacacttatcttttgggttacatttcttcagtGATGGGAGTTTCGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTGTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCATAACAAGTACATGGGCTCAGGTGGAATTGACCAAAAACCTCGCAGTCTACCCAGAAATaggtaatttgtgtgttggtagtggagttattgacctctagttcacctttctt Alignment from Spaln_aa2Genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgggtggtgggcacttttgaacacttatcttttgggttacatttcttcagTGATGGGAGTTTCGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTGTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCATAACAAGTACATGGGCTCAGGTGGAATTGACCAAAAACCTCGCAGTCTACCCAGAAATAGgtaatttgtgtgttggtagtggagttattgacctctagttcacctttctt Alignment from Spaln_nt2Genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgggtggtgggcacttttgaacacttatcttttgggttacatttcttcagTGATGGGAGTTTCGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTGTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCATAACAAGTACATGGGCTCAGGTGGAATTGACCAAAAACCTCGCAGTCTACCCAGAAATAGgtaatttgtgtgttggtagtggagttattgacctctagttcacctttctt Alignment from Pairagon TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgggtggtgggcacttttgaacacttatcttttgggttacatttcttcagTGATGGGAGTTTCGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTGTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCATAACAAGTACATGGGCTCAGGTGGAATTGACCAAAAACCTCGCAGTCTACCCAGAAATAGgtaatttgtgtgttggtagtggagttattgacctctagttcacctttctt Alignment from Exonerate_protein2genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgggtggtgggcacttttgaacacttatcttttgggttacatttcttcagTGATGGGAGTTTCGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTGTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCATAACAAGTACATGGGCTCAGGTGGAATTGACCAAAAACCTCGCAGTCTACCCAGAAATAGgtaatttgtgtgttggtagtggagttattgacctctagttcacctttctt Alignment from Exonerate_coding2genome ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAGTGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgggtggtgggcacTTTTGAACACTTATCTTTTGGGTTACATTTCTTCAGTGATGGGAGTTTCGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTGTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCATAACAAGTACATGGGCTCAGGTGGAATTGACCAAAAACCTCGCAGTCTACCCAGAAATAGgtaatttgtgtgttggtagtggagttattgacctctagttcacctttctt Alignment from GeneWise TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgggtggtgggcacttttgaacacttatcttttgggttacatttcttcagTGATGGGAGTTTCGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTGTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCATAACAAGTACATGGGCTCAGGTGGAATTGACCAAAAACCTCGCAGTCTACCCAGAAATAGgtaatttgtgtgttggtagtggagttattgacctctagttcacctttctt #### Tmem2_ID4959_18 --> 1 - 2 Original Alignment gGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAgg aaatgaattgggtaggataaatggggctttagatactatatcttttctaggGATGAATGGATCCGTGTTGGGTTCTGTTACCCGGCTAACACCAGCTTCCAGGTTACTGTTGGTTTTCTCCAGAGGCAGAATGGCTCATTGTCCAGTATTGAGGACTATGAGCCTGCACGGTCAATGGAAGAACTTCAGAAAAAGCCATCTGAGAGAAAATCTTACTTTGATTCTGGAACAgggttagtcatagaaaaaggtaatctagaatcagtactttaactaatccctg Alignment from CESAR gGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAgg aaatgaattgggtaggataaatggggctttagatactatatcttttctaggGATGAATGGATCCGTGTTGGGTTCTGTTACCCGGCTAACACCAGCTTCCAGGTTACTGTTGGTTTTCTCCAGAGGCAGAATGGCTCATTGTCCAGTATTGAGGACTATGAGCCTGCACGGTCAATGGAAGAACTTCAGAAAAAGCCATCTGAGAGAAAATCTTACTTTGATTCTGGAACAgggttagtcatagaaaaaggtaatctagaatcagtactttaactaatccctg Alignment from Spaln_aa2Genome GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG aaatgaattgggtaggataaatggggctttagatactatatcttttctagGGATGAATGGATCCGTGTTGGGTTCTGTTACCCGGCTAACACCAGCTTCCAGGTTACTGTTGGTTTTCTCCAGAGGCAGAATGGCTCATTGTCCAGTATTGAGGACTATGAGCCTGCACGGTCAATGGAAGAACTTCAGAAAAAGCCATCTGAGAGAAAATCTTACTTTGATTCTGGAACAGGgttagtcatagaaaaaggtaatctagaatcagtactttaactaatccctg Alignment from Spaln_nt2Genome GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG aaatgaattgggtaggataaatggggctttagatactatatcttttctagGGATGAATGGATCCGTGTTGGGTTCTGTTACCCGGCTAACACCAGCTTCCAGGTTACTGTTGGTTTTCTCCAGAGGCAGAATGGCTCATTGTCCAGTATTGAGGACTATGAGCCTGCACGGTCAATGGAAGAACTTCAGAAAAAGCCATCTGAGAGAAAATCTTACTTTGATTCTGGAACAGGgttagtcatagaaaaaggtaatctagaatcagtactttaactaatccctg Alignment from Pairagon GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG aaatgaattgggtaggataaatggggctttagatactatatcttttctagGGATGAATGGATCCGTGTTGGGTTCTGTTACCCGGCTAACACCAGCTTCCAGGTTACTGTTGGTTTTCTCCAGAGGCAGAATGGCTCATTGTCCAGTATTGAGGACTATGAGCCTGCACGGTCAATGGAAGAACTTCAGAAAAAGCCATCTGAGAGAAAATCTTACTTTGATTCTGGAACAGGgttagtcatagaaaaaggtaatctagaatcagtactttaactaatccctg Alignment from Exonerate_protein2genome GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG aaatgaattgggtaggataaatggggctttagatactatatcttttctagGGATGAATGGATCCGTGTTGGGTTCTGTTACCCGGCTAACACCAGCTTCCAGGTTACTGTTGGTTTTCTCCAGAGGCAGAATGGCTCATTGTCCAGTATTGAGGACTATGAGCCTGCACGGTCAATGGAAGAACTTCAGAAAAAGCCATCTGAGAGAAAATCTTACTTTGATTCTGGAACAGGgttagtcatagaaaaaggtaatctagaatcagtactttaactaatccctg Alignment from Exonerate_coding2genome GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG aaatgaattgggtaggataaatggggctttagatactatatcttttctagGGATGAATGGATCCGTGTTGGGTTCTGTTACCCGGCTAACACCAGCTTCCAGGTTACTGTTGGTTTTCTCCAGAGGCAGAATGGCTCATTGTCCAGTATTGAGGACTATGAGCCTGCACGGTCAATGGAAGAACTTCAGAAAAAGCCATCTGAGAGAAAATCTTACTTTGATTCTGGAACAGGgttagtcatagaaaaaggtaatctagaatcagtactttaactaatccctg Alignment from GeneWise GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG aaatgaattgggtaggataaatggggctttagatactatatcttttctagGGATGAATGGATCCGTGTTGGGTTCTGTTACCCGGCTAACACCAGCTTCCAGGTTACTGTTGGTTTTCTCCAGAGGCAGAATGGCTCATTGTCCAGTATTGAGGACTATGAGCCTGCACGGTCAATGGAAGAACTTCAGAAAAAGCCATCTGAGAGAAAATCTTACTTTGATTCTGGAACAGGgttagtcatagaaaaaggtaatctagaatcagtactttaactaatccctg #### Tmem2_ID4964_21 --> 0 - 2 Original Alignment GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAag ctaagaaagagtttcaaatggactgtttcccttgtcaactttctctttagGTCAATGGCACTGACTTTACCTCGCGAAGTGCAGGAGCCCTGCTTCTTCTTGTGGATCTTGGCACTGTACCCCCCCTTGTGAAGGAAAAACACATGCTCCTTTCTTCTGATGTC---CAT---GAGGAATACTTTAGAGCCCACATCCCCCCTaggtaaggctgcttcagcctttattgagccagaagtttattttaggacaact Alignment from CESAR GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAag ctaagaaagagtttcaaatggactgtttcccttgtcaactttctctttagGTCAATGGCACTGACTTTACCTCGCGAAGTGCAGGAGCCCTGCTTCTTCTTGTGGATCTTGGCACTGTACCCCCCCTTGTGAAGGAAAAACACATGCTCCTTTCTTCTGATGTCCAT------GAGGAATACTTTAGAGCCCACATCCCCCCTaggtaaggctgcttcagcctttattgagccagaagtttattttaggacaact Alignment from Spaln_aa2Genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG ctaagaaagagtttcaaatggactgtttcccttgtcaactttctctttagGTCAATGGCACTGACTTTACCTCGCGAAGTGCAGGAGCCCTGCTTCTTCTTGTGGATCTTGGCACTGTACCCCCCCTTGTGAAGGAAAAACACATGCTCCTTTCTTCTGATGTCCAT------GAGGAATACTTTAGAGCCCACATCCCCCCTAGgtaaggctgcttcagcctttattgagccagaagtttattttaggacaact Alignment from Spaln_nt2Genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG ctaagaaagagtttcaaatggactgtttcccttgtcaactttctctttagGTCAATGGCACTGACTTTACCTCGCGAAGTGCAGGAGCCCTGCTTCTTCTTGTGGATCTTGGCACTGTACCCCCCCTTGTGAAGGAAAAACACATGCTCCTTTCTTCTGATGTC-----CAT-GAGGAATACTTTAGAGCCCACATCCCCCCTAGgtaaggctgcttcagcctttattgagccagaagtttattttaggacaact Alignment from Pairagon GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG ctaagaaagagtttcaaatggactgtttcccttgtcaactttctctttagGTCAATGGCACTGACTTTACCTCGCGAAGTGCAGGAGCCCTGCTTCTTCTTGTGGATCTTGGCACTGTACCCCCCCTTGTGAAGGAAAAACACATGCTCCTTTCTTCTGATGTCCAT------GAGGAATACTTTAGAGCCCACATCCCCCCTAGgtaaggctgcttcagcctttattgagccagaagtttattttaggacaact Alignment from Exonerate_protein2genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG ctaagaaagagtttcaaatggactgtttcccttgtcaactttctctttagGTCAATGGCACTGACTTTACCTCGCGAAGTGCAGGAGCCCTGCTTCTTCTTGTGGATCTTGGCACTGTACCCCCCCTTGTGAAGGAAAAACACATGCTCCTTTCTTCTGATGTCCAT------GAGGAATACTTTAGAGCCCACATCCCCCCTAGgtaaggctgcttcagcctttattgagccagaagtttattttaggacaact Alignment from Exonerate_coding2genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAGG ctaagaaagagtttcaaatggactgtttcccttgtcaactttctctttagGTCAATGGCACTGACTTTACCTCGCGAAGTGCAGGAGCCCTGCTTCTTCTTGTGGATCTTGGCACTGTACCCCCCCTTGTGAAGGAAAAACACATGCTCCTTTCTTCTGATGTCCAT------GAGGAATACTTTAGAGCCCACATCCCCCCTAGGtaaggctgcttcagcctttattgagccagaagtttattttaggacaact Alignment from GeneWise GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG ctaagaaagagtttcaaatggactgtttcccttgtcaactttctctttagGTCAATGGCACTGACTTTACCTCGCGAAGTGCAGGAGCCCTGCTTCTTCTTGTGGATCTTGGCACTGTACCCCCCCTTGTGAAGGAAAAACACATGCTCCTTTCTTCTGATGTCCAT------GAGGAATACTTTAGAGCCCACATCCCCCCTAGgtaaggctgcttcagcctttattgagccagaagtttattttaggacaact #### Tnks2_ID7182_3 --> 2 - 1 Original Alignment tgCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTg tcaaagcctcattgcttaccccagcttaatctttatattgcttcttccagttCTATTACAGCATGGTGCCAAACCCACTTTGTGGAATACAGATGGGAGGAGGTTGTTGGATTTAGCAGATCCATCTGCCAGGGCTGTGCTGACCggtcaggtaatactctatgccaaaaaatttggtaggttatttatgtcatag Alignment from CESAR tgCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTg tcaaagcctcattgcttaccccagcttaatctttatattgcttcttccagttCTATTACAGCATGGTGCCAAACCCACTTTGTGGAATACAGATGGGAGGAGGTTGTTGGATTTAGCAGATCCATCTGCCAGGGCTGTGCTGACCggtcaggtaatactctatgccaaaaaatttggtaggttatttatgtcatag Alignment from Spaln_aa2Genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG tcaaagcctcattgcttaccccagcttaatctttatattgcttcttccagTTCTATTACAGCATGGTGCCAAACCCACTTTGTGGAATACAGATGGGAGGAGGTTGTTGGATTTAGCAGATCCATCTGCCAGGGCTGTGCTGACCGgtcaggtaatactctatgccaaaaaatttggtaggttatttatgtcatag Alignment from Spaln_nt2Genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG tcaaagcctcattgcttaccccagcttaatctttatattgcttcttccagTTCTATTACAGCATGGTGCCAAACCCACTTTGTGGAATACAGATGGGAGGAGGTTGTTGGATTTAGCAGATCCATCTGCCAGGGCTGTGCTGACCGgtcaggtaatactctatgccaaaaaatttggtaggttatttatgtcatag Alignment from Pairagon TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG tcaaagcctcattgcttaccccagcttaatctttatattgcttcttccagTTCTATTACAGCATGGTGCCAAACCCACTTTGTGGAATACAGATGGGAGGAGGTTGTTGGATTTAGCAGATCCATCTGCCAGGGCTGTGCTGACCGgtcaggtaatactctatgccaaaaaatttggtaggttatttatgtcatag Alignment from Exonerate_protein2genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG tcaaagcctcattgcttaccccagcttaatctttatattgcttcttccagTTCTATTACAGCATGGTGCCAAACCCACTTTGTGGAATACAGATGGGAGGAGGTTGTTGGATTTAGCAGATCCATCTGCCAGGGCTGTGCTGACCGgtcaggtaatactctatgccaaaaaatttggtaggttatttatgtcatag Alignment from Exonerate_coding2genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG tcaaagcctcattgcttaccccagcttaatctttatattgcttcttccagTTCTATTACAGCATGGTGCCAAACCCACTTTGTGGAATACAGATGGGAGGAGGTTGTTGGATTTAGCAGATCCATCTGCCAGGGCTGTGCTGACCGgtcaggtaatactctatgccaaaaaatttggtaggttatttatgtcatag Alignment from GeneWise TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTGGTGACTAT------------AAGAAAGATG tcaaagcctcattgcttaccccagcttaatctttatattgcttcttccagTTCTATTACAGCATGGTGCCAAACCCACTTTGTGGAATACAGATGGGAGGAGGTTGTTGGATTTAGCAGATCCATCTGCCAGGGCTGTGCTGACCGGTCAGGTAATACTCTATGCCAAAAAATTTGgtaggttatttatgtcatag #### Tnks2_ID7183_4 --> 2 - 2 Original Alignment gtGACTATAAGAAAGATGAACTTCTGGAAAGTGCCag agcaattaccggccaaaaatctgtactagtcttactccctcctcttgtaggtGACTATAAAAAGGATGAACTTCTGGAAAGTGCCaggtaacaagttgtctggcacttatagactatgaatatctggctgtgacggt Alignment from CESAR gtGACTATAAGAAAGATGAACTTCTGGAAAGTGCCag agcaattaccggccaaaaatctgtactagtcttactccctcctcttgtaggtGACTATAAAAAGGATGAACTTCTGGAAAGTGCCaggtaacaagttgtctggcacttatagactatgaatatctggctgtgacggt Alignment from Spaln_aa2Genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattaccggccaaaaatctgtactagtcttactccctcctcttgtagGTGACTATAAAAAGGATGAACTTCTGGAAAGTGCCAGgtaacaagttgtctggcacttatagactatgaatatctggctgtgacggt Alignment from Spaln_nt2Genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattaccggccaaaaatctgtactagtcttactccctcctcttgtagGTGACTATAAAAAGGATGAACTTCTGGAAAGTGCCAGgtaacaagttgtctggcacttatagactatgaatatctggctgtgacggt Alignment from Pairagon GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattaccggccaaaaatctgtactagtcttactccctcctcttgtagGTGACTATAAAAAGGATGAACTTCTGGAAAGTGCCAGgtaacaagttgtctggcacttatagactatgaatatctggctgtgacggt Alignment from Exonerate_protein2genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattaccggccaaaaatctgtactagtcttactccctcctcttgtagGTGACTATAAAAAGGATGAACTTCTGGAAAGTGCCAGgtaacaagttgtctggcacttatagactatgaatatctggctgtgacggt Alignment from Exonerate_coding2genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattaccggccaaaaatctgtactagtcttactccctcctcttgtagGTGACTATAAAAAGGATGAACTTCTGGAAAGTGCCAGgtaacaagttgtctggcacttatagactatgaatatctggctgtgacggt Alignment from GeneWise GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattaccggccaaaaatctgtactagtcttactccctcctcttgtagGTGACTATAAAAAGGATGAACTTCTGGAAAGTGCCAGgtaacaagttgtctggcacttatagactatgaatatctggctgtgacggt #### Tnks2_ID7194_15 --> 1 - 0 Original Alignment aGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgatttgaaagtacaccccacacaatgaaactgtggtgtttcagaGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAGGTTGCTGAACTACTAGTCAAGCATGGAGTTGTAGTAAATGTGGCTGACCTGTGGAAACTTACCCCTCTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAACTT---TTTCAAgtaaggttaagtgcactatctgtcaaggcctgaacagtctcaagtatgat Alignment from CESAR aGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgatttgaaagtacaccccacacaatgaaactgtggtgtttcagaGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAGGTTGCTGAACTACTAGTCAAGCATGGAGTTGTAGTAAATGTGGCTGACCTGTGGAAACTTACCCCTCTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAACTT---TTTCAAgtaaggttaagtgcactatctgtcaaggcctgaacagtctcaagtatgat Alignment from Spaln_aa2Genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgatttgaaagtacaccccacacaatgaaactgtggtgtttcagAGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAGGTTGCTGAACTACTAGTCAAGCATGGAGTTGTAGTAAATGTGGCTGACCTGTGGAAACTTACCCCTCTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAA---CTTTTTCAAgtaaggttaagtgcactatctgtcaaggcctgaacagtctcaagtatgat Alignment from Spaln_nt2Genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTC agacaatgatttgaaagtacaccccacacaatgaaactgtggtgtttcagAGGACTGGTACCTTTGC---ATGCTTGCTCTTATGGACGCTATGAGGTTGCTGAACTACTAGTCAAGCATGGAGTTGTAGTAAATGTGGCTGACCTGTGGAAACTTACCCCTCTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAACTTTTTCAAgtaaggttaagtgcactatctgtcaaggcctgaacagtctcaagtatgat Alignment from Pairagon AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgatttgaaagtacaccccacacaatgaaactgtggtgtttcagAGGACTGGTACCTTTGC---ATGCTTGCTCTTATGGACGCTATGAGGTTGCTGAACTACTAGTCAAGCATGGAGTTGTAGTAAATGTGGCTGACCTGTGGAAACTTACCCCTCTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAACTT---TTTCAAgtaaggttaagtgcactatctgtcaaggcctgaacagtctcaagtatgat Alignment from Exonerate_protein2genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgatttgaaagtacaccccacacaatgaaactgtggtgtttcagAGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAGGTTGCTGAACTACTAGTCAAGCATGGAGTTGTAGTAAATGTGGCTGACCTGTGGAAACTTACCCCTCTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAA---CTTTTTCAAgtaaggttaagtgcactatctgtcaaggcctgaacagtctcaagtatgat Alignment from Exonerate_coding2genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgatttgaaagtacaccccacacaatgaaactgtggtgtttcagAGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAGGTTGCTGAACTACTAGTCAAGCATGGAGTTGTAGTAAATGTGGCTGACCTGTGGAAACTTACCCCTCTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAA---CTTTTTCAAgtaaggttaagtgcactatctgtcaaggcctgaacagtctcaagtatgat Alignment from GeneWise AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgatttgaaagtacaccccacacaatgaaactgtggtgtttcagAGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAGGTTGCTGAACTACTAGTCAAGCATGGAGTTGTAGTAAATGTGGCTGACCTGTGGAAACTTACCCCTCTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAACTTTTT---CAAgtaaggttaagtgcactatctgtcaaggcctgaacagtctcaagtatgat #### Tnks2_ID7197_18 --> 0 - 0 Original Alignment CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA tcccatgcttaatgtaagatcaagtcaatcccctctacctctgtctttagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTGCGTGAAGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTCCTGGCTCATGGAGCTGACCCTACTCTAAAAAACCAGGAAGGACAAACGTCTTTAGATTTAGTTTCAgtatgagcccttctaaggactgagagcttgatccctatgtggacttattt Alignment from CESAR CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA tcccatgcttaatgtaagatcaagtcaatcccctctacctctgtctttagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTGCGTGAAGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTCCTGGCTCATGGAGCTGACCCTACTCTAAAAAACCAGGAAGGACAAACGTCTTTAGATTTAGTTTCAgtatgagcccttctaaggactgagagcttgatccctatgtggacttattt Alignment from Spaln_aa2Genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA tcccatgcttaatgtaagatcaagtcaatcccctctacctctgtctttagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTGCGTGAAGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTCCTGGCTCATGGAGCTGACCCTACTCTAAAAAACCAGGAAGGACAAACGTCTTTAGATTTAGTTTCAgtatgagcccttctaaggactgagagcttgatccctatgtggacttattt Alignment from Spaln_nt2Genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA tcccatgcttaatgtaagatcaagtcaatcccctctacctctgtctttagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTGCGTGAAGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTCCTGGCTCATGGAGCTGACCCTACTCTAAAAAACCAGGAAGGACAAACGTCTTTAGATTTAGTTTCAgtatgagcccttctaaggactgagagcttgatccctatgtggacttattt Alignment from Pairagon CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA tcccatgcttaatgtaagatcaagtcaatcccctctacctctgtctttagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTGCGTGAAGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTCCTGGCTCATGGAGCTGACCCTACTCTAAAAAACCAGGAAGGACAAACGTCTTTAGATTTAGTTTCAgtatgagcccttctaaggactgagagcttgatccctatgtggacttattt Alignment from Exonerate_protein2genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA tcccatgcttaatgtaagatcaagtcaatcccctctacctctgtctttagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTGCGTGAAGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTCCTGGCTCATGGAGCTGACCCTACTCTAAAAAACCAGGAAGGACAAACGTCTTTAGATTTAGTTTCAgtatgagcccttctaaggactgagagcttgatccctatgtggacttattt Alignment from Exonerate_coding2genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA tcccatgcttaatgtaagatcaagtcaatcccctctacctctgtctttagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTGCGTGAAGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTCCTGGCTCATGGAGCTGACCCTACTCTAAAAAACCAGGAAGGACAAACGTCTTTAGATTTAGTTTCAgtatgagcccttctaaggactgagagcttgatccctatgtggacttattt Alignment from GeneWise CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA tcccatgcttaatgtaagatcaagtcaatcccctctacctctgtctttagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTGCGTGAAGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTCCTGGCTCATGGAGCTGACCCTACTCTAAAAAACCAGGAAGGACAAACGTCTTTAGATTTAGTTTCAgtatgagcccttctaaggactgagagcttgatccctatgtggacttattt #### Tnks2_ID7199_20 --> 2 - 0 Original Alignment atTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG acatgacactgtccatgtgagaacatttggtactcacatgtatcgtacagatTCGGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACCTGATGGATATATTTGAGAGAGAACAGgtaagactgtgaactttctgctgcaccttagcggcgtgtcgattacctca Alignment from CESAR atTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG acatgacactgtccatgtgagaacatttggtactcacatgtatcgtacagatTCGGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACCTGATGGATATATTTGAGAGAGAACAGgtaagactgtgaactttctgctgcaccttagcggcgtgtcgattacctca Alignment from Spaln_aa2Genome ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG acatgacactgtccatgtgagaacatttggtactcacatgtatcgtacagATTCGGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACCTGATGGATATATTTGAGAGAGAACAGgtaagactgtgaactttctgctgcaccttagcggcgtgtcgattacctca Alignment from Spaln_nt2Genome ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG acatgacactgtccatgtgagaacatttggtactcacatgtatcgtacagATTCGGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACCTGATGGATATATTTGAGAGAGAACAGgtaagactgtgaactttctgctgcaccttagcggcgtgtcgattacctca Alignment from Pairagon ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG acatgacactgtccatgtgagaacatttggtactcacatgtatcgtacagATTCGGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACCTGATGGATATATTTGAGAGAGAACAGgtaagactgtgaactttctgctgcaccttagcggcgtgtcgattacctca Alignment from Exonerate_protein2genome ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG acatgacactgtccatgtgagaacatttggtactcacatgtatcgtacagATTCGGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACCTGATGGATATATTTGAGAGAGAACAGgtaagactgtgaactttctgctgcaccttagcggcgtgtcgattacctca Alignment from Exonerate_coding2genome ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG acatgacactgtccatgtgagaacatttggtactcacatgtatcgtacagATTCGGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACCTGATGGATATATTTGAGAGAGAACAGgtaagactgtgaactttctgctgcaccttagcggcgtgtcgattacctca Alignment from GeneWise ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG acatgacactgtccatgtgagaacatttggtactcacatgtatcgtacagATTCGGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACCTGATGGATATATTTGAGAGAGAACAGgtaagactgtgaactttctgctgcaccttagcggcgtgtcgattacctca #### Trpm3_ID5035_2 --> 0 - 2 Original Alignment GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATag gtgtcataagtcatttaatccactgatcactttgtctatttctctcctagGCTCAAAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATaggtaagataaatggaactttctagtacatgagggaataattacacaacaaa Alignment from CESAR GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATag gtgtcataagtcatttaatccactgatcactttgtctatttctctcctagGCTCAAAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATaggtaagataaatggaactttctagtacatgagggaataattacacaacaaa Alignment from Spaln_aa2Genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagtcatttaatccactgatcactttgtctatttctctcctagGCTCAAAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtaagataaatggaactttctagtacatgagggaataattacacaacaaa Alignment from Spaln_nt2Genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagtcatttaatccactgatcactttgtctatttctctcctagGCTCAAAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtaagataaatggaactttctagtacatgagggaataattacacaacaaa Alignment from Pairagon GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagtcatttaatccactgatcactttgtctatttctctcctagGCTCAAAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtaagataaatggaactttctagtacatgagggaataattacacaacaaa Alignment from Exonerate_protein2genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagtcatttaatccactgatcactttgtctatttctctcctagGCTCAAAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtaagataaatggaactttctagtacatgagggaataattacacaacaaa Alignment from Exonerate_coding2genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagtcatttaatccactgatcactttgtctatttctctcctagGCTCAAAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtaagataaatggaactttctagtacatgagggaataattacacaacaaa Alignment from GeneWise GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagtcatttaatccactgatcactttgtctatttctctcctagGCTCAAAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtaagataaatggaactttctagtacatgagggaataattacacaacaaa #### Trpm3_ID5041_6 --> 0 - 1 Original Alignment GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAa ctgatatgcatcttactctcatttctcttggtccctgcctggctctgcagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATACTGGCCGACAACGGAACCACAGGGAAGTACGGTGCTGAGGTGAAGCTCCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAagtaagttttcacactagagggaggatcagtacattgaaaagttgtgggtt Alignment from CESAR GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAa ctgatatgcatcttactctcatttctcttggtccctgcctggctctgcagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATACTGGCCGACAACGGAACCACAGGGAAGTACGGTGCTGAGGTGAAGCTCCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAagtaagttttcacactagagggaggatcagtacattgaaaagttgtgggtt Alignment from Spaln_aa2Genome GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA ctgatatgcatcttactctcatttctcttggtccctgcctggctctgcagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATACTGGCCGACAACGGAACCACAGGGAAGTACGGTGCTGAGGTGAAGCTCCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtaagttttcacactagagggaggatcagtacattgaaaagttgtgggtt Alignment from Spaln_nt2Genome GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA ctgatatgcatcttactctcatttctcttggtccctgcctggctctgcagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATACTGGCCGACAACGGAACCACAGGGAAGTACGGTGCTGAGGTGAAGCTCCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtaagttttcacactagagggaggatcagtacattgaaaagttgtgggtt Alignment from Pairagon GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA ctgatatgcatcttactctcatttctcttggtccctgcctggctctgcagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATACTGGCCGACAACGGAACCACAGGGAAGTACGGTGCTGAGGTGAAGCTCCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtaagttttcacactagagggaggatcagtacattgaaaagttgtgggtt Alignment from Exonerate_protein2genome GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA ctgatatgcatcttactctcatttctcttggtccctgcctggctctgcagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATACTGGCCGACAACGGAACCACAGGGAAGTACGGTGCTGAGGTGAAGCTCCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtaagttttcacactagagggaggatcagtacattgaaaagttgtgggtt Alignment from Exonerate_coding2genome GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA ctgatatgcatcttactctcatttctcttggtccctgcctggctctgcagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATACTGGCCGACAACGGAACCACAGGGAAGTACGGTGCTGAGGTGAAGCTCCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtaagttttcacactagagggaggatcagtacattgaaaagttgtgggtt Alignment from GeneWise GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA ctgatatgcatcttactctcatttctcttggtccctgcctggctctgcagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATACTGGCCGACAACGGAACCACAGGGAAGTACGGTGCTGAGGTGAAGCTCCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtaagttttcacactagagggaggatcagtacattgaaaagttgtgggtt #### Trpm3_ID5042_7 --> 2 - 2 Original Alignment gaATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCgg tctactcaaggaaatatatatattggaatgttttattttttttcctccaggaATAGGTCATGGTGTTCCAGTGGTAACCCTTCTTGTAGAAGGAGGAACGAATGTTATTACAATTGTTTTGGAATACCTTCTACGTGACACCCCTCCTGTTCCAGTTGTTGTCTGTGATGGTAGTGGATGGGCCTCTGATAACCTTGCCTTGGGCCATAAATACTCCAAAGAAAGTgggtatgttagtaatagtatagctgggcttgtttgctagcaatatcccgggg Alignment from CESAR gaATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCgg tctactcaaggaaatatatatattggaatgttttattttttttcctccaggaATAGGTCATGGTGTTCCAGTGGTAACCCTTCTTGTAGAAGGAGGAACGAATGTTATTACAATTGTTTTGGAATACCTTCTACGTGACACCCCTCCTGTTCCAGTTGTTGTCTGTGATGGTAGTGGATGGGCCTCTGATAACCTTGCCTTGGGCCATAAATACTCCAAAGAAAGTgggtatgttagtaatagtatagctgggcttgtttgctagcaatatcccgggg Alignment from Spaln_aa2Genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC---CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG tctactcaaggaaatatatatattggaatgttttattttttttcctccagGAATAGGTCATGGTGTTCCAGTGGTAACCCTTCTTGTAGAAGGAGGAACGAATGTTATTACAATTGTTTTGGAATACCTTCTACGTGACACCCCTCCTGTTCCAGTTGTTGTCTGTGATGGTAGTGGATGGGCCTCTGATAACCTTGCCTTGGGCCATAAATACTCCAAAGAAAGTGGgtatgttagtaatagtatagctgggcttgtttgctagcaatatcccgggg Alignment from Spaln_nt2Genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTTCG---AGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG tctactcaaggaaatatatatattggaatgttttattttttttcctccagGAATAGGTCATGGTGTTCCAGTGGTAACCCTTCTTGTAGAAGGAGGAACGAATGTTATTACAATTGTTTTGGAATACCTTCTACGTGACACCCCTCCTGTTCCAGTTGTTGTCTGTGATGGTAGTGGATGGGCCTCTGATAACCTTGCCTTGGGCCATAAATACTCCAAAGAAAGTGGgtatgttagtaatagtatagctgggcttgtttgctagcaatatcccgggg Alignment from Pairagon GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG tctactcaaggaaatatatatattggaatgttttattttttttcctccagGAATAGGTCATGGTGTTCCAGTGGTAACCCTTCTTGTAGAAGGAGGAACGAATGTTATTACAATTGTTTTGGAATACCTTCTACGTGACACCCCTCCTGTTCCAGTTGTTGTCTGTGATGGTAGTGGATGGGCCTCTGATAACCTTGCCTTGGGCCATAAATACTCCAAAGAAAGTGGgtatgttagtaatagtatagctgggcttgtttgctagcaatatcccgggg Alignment from Exonerate_protein2genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC---CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG tctactcaaggaaatatatatattggaatgttttattttttttcctccagGAATAGGTCATGGTGTTCCAGTGGTAACCCTTCTTGTAGAAGGAGGAACGAATGTTATTACAATTGTTTTGGAATACCTTCTACGTGACACCCCTCCTGTTCCAGTTGTTGTCTGTGATGGTAGTGGATGGGCCTCTGATAACCTTGCCTTGGGCCATAAATACTCCAAAGAAAGTGGgtatgttagtaatagtatagctgggcttgtttgctagcaatatcccgggg Alignment from Exonerate_coding2genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC---CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG tctactcaaggaaatatatatattggaatgttttattttttttcctccagGAATAGGTCATGGTGTTCCAGTGGTAACCCTTCTTGTAGAAGGAGGAACGAATGTTATTACAATTGTTTTGGAATACCTTCTACGTGACACCCCTCCTGTTCCAGTTGTTGTCTGTGATGGTAGTGGATGGGCCTCTGATAACCTTGCCTTGGGCCATAAATACTCCAAAGAAAGTGGgtatgttagtaatagtatagctgggcttgtttgctagcaatatcccgggg Alignment from GeneWise GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG tctactcaaggaaatatatatattggaatgttttattttttttcctccagGAATAGGTCATGGTGTTCCAGTGGTAACCCTTCTTGTAGAAGGAGGAACGAATGTTATTACAATTGTTTTGGAATACCTTCTACGTGACACCCCTCCTGTTCCAGTTGTTGTCTGTGATGGTAGTGGATGGGCCTCTGATAACCTTGCCTTGGGCCATAAATACTCCAAAGAAAGTGGgtatgttagtaatagtatagctgggcttgtttgctagcaatatcccgggg #### Trpm3_ID5055_11 --> 0 - 0 Original Alignment GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG tgtattggtgctacccacaagagctgcatctctctgtgctcttctcatagGTTGGGTCCCTAGAGCCAGCCATACTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGACTAAGCATGCACCGTATTCTCACAATCTCCAGACTAGAGGAACTTTACAATACGgtgagtctaagcaaagtacattataggtccctctcgcatccactcgtcct Alignment from CESAR GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG tgtattggtgctacccacaagagctgcatctctctgtgctcttctcatagGTTGGGTCCCTAGAGCCAGCCATACTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGACTAAGCATGCACCGTATTCTCACAATCTCCAGACTAGAGGAACTTTACAATACGgtgagtctaagcaaagtacattataggtccctctcgcatccactcgtcct Alignment from Spaln_aa2Genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG tgtattggtgctacccacaagagctgcatctctctgtgctcttctcatagGTTGGGTCCCTAGAGCCAGCCATACTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGACTAAGCATGCACCGTATTCTCACAATCTCCAGACTAGAGGAACTTTACAATACGgtgagtctaagcaaagtacattataggtccctctcgcatccactcgtcct Alignment from Spaln_nt2Genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG tgtattggtgctacccacaagagctgcatctctctgtgctcttctcatagGTTGGGTCCCTAGAGCCAGCCATACTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGACTAAGCATGCACCGTATTCTCACAATCTCCAGACTAGAGGAACTTTACAATACGgtgagtctaagcaaagtacattataggtccctctcgcatccactcgtcct Alignment from Pairagon GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG tgtattggtgctacccacaagagctgcatctctctgtgctcttctcatagGTTGGGTCCCTAGAGCCAGCCATACTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGACTAAGCATGCACCGTATTCTCACAATCTCCAGACTAGAGGAACTTTACAATACGgtgagtctaagcaaagtacattataggtccctctcgcatccactcgtcct Alignment from Exonerate_protein2genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG tgtattggtgctacccacaagagctgcatctctctgtgctcttctcatagGTTGGGTCCCTAGAGCCAGCCATACTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGACTAAGCATGCACCGTATTCTCACAATCTCCAGACTAGAGGAACTTTACAATACGgtgagtctaagcaaagtacattataggtccctctcgcatccactcgtcct Alignment from Exonerate_coding2genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG tgtattggtgctacccacaagagctgcatctctctgtgctcttctcatagGTTGGGTCCCTAGAGCCAGCCATACTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGACTAAGCATGCACCGTATTCTCACAATCTCCAGACTAGAGGAACTTTACAATACGgtgagtctaagcaaagtacattataggtccctctcgcatccactcgtcct Alignment from GeneWise GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG tgtattggtgctacccacaagagctgcatctctctgtgctcttctcatagGTTGGGTCCCTAGAGCCAGCCATACTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGACTAAGCATGCACCGTATTCTCACAATCTCCAGACTAGAGGAACTTTACAATACGgtgagtctaagcaaagtacattataggtccctctcgcatccactcgtcct #### Trpm3_ID5060_16 --> 1 - 0 Original Alignment gGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgcagagcctgtatgaaaccctacgctcgagcctctacctgacccacaggGACTTTGGCCGACTGGCTGTGGATCTTCTGGATCAATCCTACAAACAGGATGAGCAGCTAGCCACAAAATTGCTATCATACGACCTATCAAATTGGAGTAATGCAACATGCCTCCAATTATCAGTTGGT---------GGGTACTTCATTGCTCACATGTGTAGCCAT---ATACTTACTGACACATGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtaatcatgcacctgcatgttgccattcagccttgatgaggggatggatt Alignment from CESAR gGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgcagagcctgtatgaaaccctacgctcgagcctctacctgacccacaggGACTTTGGCCGACTGGCTGTGGATCTTCTGGATCAATCCTACAAACAGGATGAGCAGCTAGCCACAAAATTGCTATCATACGACCTATCAAATTGGAGTAATGCAACATGCCTCCAATTATCAGTTGGTGGG---------TACTTCATTGCTCACATGTGTAGCCATATA---CTTACTGACACATGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtaatcatgcacctgcatgttgccattcagccttgatgaggggatggatt Alignment from Spaln_aa2Genome GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgcagagcctgtatgaaaccctacgctcgagcctctacctgacccacagGGACTTTGGCCGACTGGCTGTGGATCTTCTGGATCAATCCTACAAACAGGATGAGCAGCTAGCCACAAAATTGCTATCATACGACCTATCAAATTGGAGTAATGCAACATGCCTCCAATTATCAGTTGGTGGG---------TACTTCATTGCTCACATGTGTAGCCATATA---CTTACTGACACATGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtaatcatgcacctgcatgttgccattcagccttgatgaggggatggatt Alignment from Spaln_nt2Genome GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgcagagcctgtatgaaaccctacgctcgagcctctacctgacccacagGGACTTTGGCCGACTGGCTGTGGATCTTCTGGATCAATCCTACAAACAGGATGAGCAGCTAGCCACAAAATTGCTATCATACGACCTATCAAATTGGAGTAATGCAACATGCCTCCAATTATCAGTTGGTG---------GGTACTTCATTGCTCACATGTGTAGCCATA---TACTTACTGACACATGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtaatcatgcacctgcatgttgccattcagccttgatgaggggatggatt Alignment from Pairagon GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCA----------GCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgcagagcctgtatgaaaccctacgctcgagcctctacctgacccacagGGACTTTGGCCGACTGGCTGTGGATCTTCTGGATCAATCCTACAAACAGGATGAGCAGCTAGCCACAAAATTGCTATCATACGACCTATCAAATTGGAGTAATGCAACATGCCTCCAATTATCAGTTGGTGGGT-------------------ACTTCATTGCTCACATGTGTAGCCATA---TACTTACTGACACATGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtaatcatgcacctgcatgttgccattcagccttgatgaggggatggatt Alignment from Exonerate_protein2genome GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgcagagcctgtatgaaaccctacgctcgagcctctacctgacccacagGGACTTTGGCCGACTGGCTGTGGATCTTCTGGATCAATCCTACAAACAGGATGAGCAGCTAGCCACAAAATTGCTATCATACGACCTATCAAATTGGAGTAATGCAACATGCCTCCAATTATCAGTTGGTGGGTAC---------TTCATTGCTCACATGTGTAGCCAT---ATACTTACTGACACATGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtaatcatgcacctgcatgttgccattcagccttgatgaggggatggatt Alignment from Exonerate_coding2genome GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgcagagcctgtatgaaaccctacgctcgagcctctacctgacccacagGGACTTTGGCCGACTGGCTGTGGATCTTCTGGATCAATCCTACAAACAGGATGAGCAGCTAGCCACAAAATTGCTATCATACGACCTATCAAATTGGAGTAATGCAACATGCCTCCAATTATCAGTTGGTGGGTAC---------TTCATTGCTCACATGTGTAGCCAT---ATACTTACTGACACATGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtaatcatgcacctgcatgttgccattcagccttgatgaggggatggatt Alignment from GeneWise GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgcagagcctgtatgaaaccctacgctcgagcctctacctgacccacagGGACTTTGGCCGACTGGCTGTGGATCTTCTGGATCAATCCTACAAACAGGATGAGCAGCTAGCCACAAAATTGCTATCATACGACCTATCAAATTGGAGTAATGCAACATGCCTCCAATTATCAGTTGGTGGGTAC---------TTCATTGCTCACATGTGTAGCCAT---ATACTTACTGACACATGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtaatcatgcacctgcatgttgccattcagccttgatgaggggatggatt #### Trpm3_ID5064_19 --> 0 - 0 Original Alignment CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG taggttgattcatgatgcattctcctgtcattttctgtcttcctttgtagCTCGCATATATTGGATTTCTGATGCTCTTCAACTACATTGTAGTGGTGAAGATGGAGCGCTGGCCTTCCACTCAAGAATGGATTGTCATCTCCTACATTTTCACACTGGGAATAGAGAAGATGAGGGAGgtaaattagccacatagataatataaattaagataattgaccaagcaaaa Alignment from CESAR CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG taggttgattcatgatgcattctcctgtcattttctgtcttcctttgtagCTCGCATATATTGGATTTCTGATGCTCTTCAACTACATTGTAGTGGTGAAGATGGAGCGCTGGCCTTCCACTCAAGAATGGATTGTCATCTCCTACATTTTCACACTGGGAATAGAGAAGATGAGGGAGgtaaattagccacatagataatataaattaagataattgaccaagcaaaa Alignment from Spaln_aa2Genome CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG taggttgattcatgatgcattctcctgtcattttctgtcttcctttgtagCTCGCATATATTGGATTTCTGATGCTCTTCAACTACATTGTAGTGGTGAAGATGGAGCGCTGGCCTTCCACTCAAGAATGGATTGTCATCTCCTACATTTTCACACTGGGAATAGAGAAGATGAGGGAGgtaaattagccacatagataatataaattaagataattgaccaagcaaaa Alignment from Spaln_nt2Genome CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG taggttgattcatgatgcattctcctgtcattttctgtcttcctttgtagCTCGCATATATTGGATTTCTGATGCTCTTCAACTACATTGTAGTGGTGAAGATGGAGCGCTGGCCTTCCACTCAAGAATGGATTGTCATCTCCTACATTTTCACACTGGGAATAGAGAAGATGAGGGAGgtaaattagccacatagataatataaattaagataattgaccaagcaaaa Alignment from Pairagon CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG taggttgattcatgatgcattctcctgtcattttctgtcttcctttgtagCTCGCATATATTGGATTTCTGATGCTCTTCAACTACATTGTAGTGGTGAAGATGGAGCGCTGGCCTTCCACTCAAGAATGGATTGTCATCTCCTACATTTTCACACTGGGAATAGAGAAGATGAGGGAGgtaaattagccacatagataatataaattaagataattgaccaagcaaaa Alignment from Exonerate_protein2genome CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG taggttgattcatgatgcattctcctgtcattttctgtcttcctttgtagCTCGCATATATTGGATTTCTGATGCTCTTCAACTACATTGTAGTGGTGAAGATGGAGCGCTGGCCTTCCACTCAAGAATGGATTGTCATCTCCTACATTTTCACACTGGGAATAGAGAAGATGAGGGAGgtaaattagccacatagataatataaattaagataattgaccaagcaaaa Alignment from Exonerate_coding2genome CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG taggttgattcatgatgcattctcctgtcattttctgtcttcctttgtagCTCGCATATATTGGATTTCTGATGCTCTTCAACTACATTGTAGTGGTGAAGATGGAGCGCTGGCCTTCCACTCAAGAATGGATTGTCATCTCCTACATTTTCACACTGGGAATAGAGAAGATGAGGGAGgtaaattagccacatagataatataaattaagataattgaccaagcaaaa Alignment from GeneWise CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG taggttgattcatgatgcattctcctgtcattttctgtcttcctttgtagCTCGCATATATTGGATTTCTGATGCTCTTCAACTACATTGTAGTGGTGAAGATGGAGCGCTGGCCTTCCACTCAAGAATGGATTGTCATCTCCTACATTTTCACACTGGGAATAGAGAAGATGAGGGAGgtaaattagccacatagataatataaattaagataattgaccaagcaaaa #### Trpm3_ID5067_21 --> 0 - 1 Original Alignment ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAg gtataattggttcaagacccaataataggtaatcctctcgtttcttgtagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTAATGAGCTTTGGGGTCGCCAGGCAAGCTATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAAAATATCTGTTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGGCAggtaggtaaaatagtgccctatttgattataattgttatgccagaaacaaa Alignment from CESAR ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAg gtataattggttcaagacccaataataggtaatcctctcgtttcttgtagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTAATGAGCTTTGGGGTCGCCAGGCAAGCTATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAAAATATCTGTTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGGCAggtaggtaaaatagtgccctatttgattataattgttatgccagaaacaaa Alignment from Spaln_aa2Genome ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtataattggttcaagacccaataataggtaatcctctcgtttcttgtagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTAATGAGCTTTGGGGTCGCCAGGCAAGCTATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAAAATATCTGTTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGGCAGgtaggtaaaatagtgccctatttgattataattgttatgccagaaacaaa Alignment from Spaln_nt2Genome ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtataattggttcaagacccaataataggtaatcctctcgtttcttgtagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTAATGAGCTTTGGGGTCGCCAGGCAAGCTATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAAAATATCTGTTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGGCAGgtaggtaaaatagtgccctatttgattataattgttatgccagaaacaaa Alignment from Pairagon ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtataattggttcaagacccaataataggtaatcctctcgtttcttgtagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTAATGAGCTTTGGGGTCGCCAGGCAAGCTATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAAAATATCTGTTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGGCAGgtaggtaaaatagtgccctatttgattataattgttatgccagaaacaaa Alignment from Exonerate_protein2genome ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtataattggttcaagacccaataataggtaatcctctcgtttcttgtagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTAATGAGCTTTGGGGTCGCCAGGCAAGCTATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAAAATATCTGTTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGGCAGgtaggtaaaatagtgccctatttgattataattgttatgccagaaacaaa Alignment from Exonerate_coding2genome ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtataattggttcaagacccaataataggtaatcctctcgtttcttgtagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTAATGAGCTTTGGGGTCGCCAGGCAAGCTATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAAAATATCTGTTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGGCAGgtaggtaaaatagtgccctatttgattataattgttatgccagaaacaaa Alignment from GeneWise ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtataattggttcaagacccaataataggtaatcctctcgtttcttgtagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTAATGAGCTTTGGGGTCGCCAGGCAAGCTATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAAAATATCTGTTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGGCAGgtaggtaaaatagtgccctatttgattataattgttatgccagaaacaaa #### Trpm3_ID5078_22 --> 2 - 2 Original Alignment ctCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCaa cacaattaaaccttactcccacgcactcgacctttcctgctcaaatacagctCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGAACAATTCAACTGCCTTTGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCTGTCTTCaagtaggtgtcattcaggattgtgcaatgcatgttagctagtccttggtagt Alignment from CESAR ctCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCaa cacaattaaaccttactcccacgcactcgacctttcctgctcaaatacagctCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGAACAATTCAACTGCCTTTGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCTGTCTTCaagtaggtgtcattcaggattgtgcaatgcatgttagctagtccttggtagt Alignment from Spaln_aa2Genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA cacaattaaaccttactcccacgcactcgacctttcctgctcaaatacagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGAACAATTCAACTGCCTTTGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCTGTCTTCAAgtaggtgtcattcaggattgtgcaatgcatgttagctagtccttggtagt Alignment from Spaln_nt2Genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA cacaattaaaccttactcccacgcactcgacctttcctgctcaaatacagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGAACAATTCAACTGCCTTTGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTAT------TTACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCTGTCTTCAAgtaggtgtcattcaggattgtgcaatgcatgttagctagtccttggtagt Alignment from Pairagon CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA cacaattaaaccttactcccacgcactcgacctttcctgctcaaatacagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGAACAATTCAACTGCCTTTGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTAT------TTACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCTGTCTTCAAgtaggtgtcattcaggattgtgcaatgcatgttagctagtccttggtagt Alignment from Exonerate_protein2genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA cacaattaaaccttactcccacgcactcgacctttcctgctcaaatacagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGAACAATTCAACTGCCTTTGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCTGTCTTCAAgtaggtgtcattcaggattgtgcaatgcatgttagctagtccttggtagt Alignment from Exonerate_coding2genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA cacaattaaaccttactcccacgcactcgacctttcctgctcaaatacagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGAACAATTCAACTGCCTTTGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCTGTCTTCAAgtaggtgtcattcaggattgtgcaatgcatgttagctagtccttggtagt Alignment from GeneWise CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA cacaattaaaccttactcccacgcactcgacctttcctgctcaaatacagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGAACAATTCAACTGCCTTTGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCTGTCTTCAAgtaggtgtcattcaggattgtgcaatgcatgttagctagtccttggtagt #### Trpm6_ID4470_8 --> 2 - 2 Original Alignment gcTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAgg gaggtattggaacactactccgcagtctgctcacactcatttctctgcaggcTCAAGGCAGGGGGTGCCA------CGGTTAATTATGGAGGGAAGTCCCATTGTTATCTTCTGGGCATGGGAAACTGTCCAGAACAAAGAGCAAGTGGTGGTATGTGAGGGGACACGAAGAGCTGCTGGCCTTTTAACCTACACATATAAGCACTTGGAGGATGGTgggtatgtatgaattccctgtcatttacaatgaattgccctcccttctacag Alignment from CESAR gcTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAgg gaggtattggaacactactccgcagtctgctcacactcatttctctgcaggcTCAAGGCAGGGGGTGCCA------CGGTTAATTATGGAGGGAAGTCCCATTGTTATCTTCTGGGCATGGGAAACTGTCCAGAACAAAGAGCAAGTGGTGGTATGTGAGGGGACACGAAGAGCTGCTGGCCTTTTAACCTACACATATAAGCACTTGGAGGATGGTgggtatgtatgaattccctgtcatttacaatgaattgccctcccttctacag Alignment from Spaln_aa2Genome GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG gaggtattggaacactactccgcagtctgctcacactcatttctctgcagGCTCAAGGCAGGGGGTGCCA------CGGTTAATTATGGAGGGAAGTCCCATTGTTATCTTCTGGGCATGGGAAACTGTCCAGAACAAAGAGCAAGTGGTGGTATGTGAGGGGACACGAAGAGCTGCTGGCCTTTTAACCTACACATATAAGCACTTGGAGGATGGTGGgtatgtatgaattccctgtcatttacaatgaattgccctcccttctacag Alignment from Spaln_nt2Genome GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG gaggtattggaacactactccgcagtctgctcacactcatttctctgcagGCTCAAGGCAGGGGGTGCC------ACGGTTAATTATGGAGGGAAGTCCCATTGTTATCTTCTGGGCATGGGAAACTGTCCAGAACAAAGAGCAAGTGGTGGTATGTGAGGGGACACGAAGAGCTGCTGGCCTTTTAACCTACACATATAAGCACTTGGAGGATGGTGGgtatgtatgaattccctgtcatttacaatgaattgccctcccttctacag Alignment from Pairagon GCTCAAGACAAGGTGTGCC---------TGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG gaggtattggaacactactccgcagtctgctcacactcatttctctgcagGCTCAAGGCAGGGGGTGCCACGGTTAATT---------------ATGGAGGGAAGTCCCATTGTTATCTTCTGGGCATGGGAAACTGTCCAGAACAAAGAGCAAGTGGTGGTATGTGAGGGGACACGAAGAGCTGCTGGCCTTTTAACCTACACATATAAGCACTTGGAGGATGGTGGgtatgtatgaattccctgtcatttacaatgaattgccctcccttctacag Alignment from Exonerate_protein2genome GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG gaggtattggaacactactccgcagtctgctcacactcatttctctgcagGCTCAAGGCAGGGGGTGCCA------CGGTTAATTATGGAGGGAAGTCCCATTGTTATCTTCTGGGCATGGGAAACTGTCCAGAACAAAGAGCAAGTGGTGGTATGTGAGGGGACACGAAGAGCTGCTGGCCTTTTAACCTACACATATAAGCACTTGGAGGATGGTGGgtatgtatgaattccctgtcatttacaatgaattgccctcccttctacag Alignment from Exonerate_coding2genome GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG gaggtattggaacactactccgcagtctgctcacactcatttctctgcagGCTCAAGGCAGGGGGTGCCA------CGGTTAATTATGGAGGGAAGTCCCATTGTTATCTTCTGGGCATGGGAAACTGTCCAGAACAAAGAGCAAGTGGTGGTATGTGAGGGGACACGAAGAGCTGCTGGCCTTTTAACCTACACATATAAGCACTTGGAGGATGGTGGgtatgtatgaattccctgtcatttacaatgaattgccctcccttctacag Alignment from GeneWise GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG gaggtattggaacactactccgcagtctgctcacactcatttctctgcagGCTCAAGGCAGGGGGTGCCA------CGGTTAATTATGGAGGGAAGTCCCATTGTTATCTTCTGGGCATGGGAAACTGTCCAGAACAAAGAGCAAGTGGTGGTATGTGAGGGGACACGAAGAGCTGCTGGCCTTTTAACCTACACATATAAGCACTTGGAGGATGGTGGgtatgtatgaattccctgtcatttacaatgaattgccctcccttctacag #### Trpm6_ID4472_10 --> 0 - 1 Original Alignment ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGg ctttaatgtcagatcaatagtgccatgctcttccttggttctctcaccagATTACTATATTTGATGCTGATTCAAAAGAGCACGAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTTAAGggtgaggattattcgcaacttctccctctccctgcttctggatgtgtaagt Alignment from CESAR ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGg ctttaatgtcagatcaatagtgccatgctcttccttggttctctcaccagATTACTATATTTGATGCTGATTCAAAAGAGCACGAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTTAAGggtgaggattattcgcaacttctccctctccctgcttctggatgtgtaagt Alignment from Spaln_aa2Genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG ctttaatgtcagatcaatagtgccatgctcttccttggttctctcaccagATTACTATATTTGATGCTGATTCAAAAGAGCACGAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTTAAGGgtgaggattattcgcaacttctccctctccctgcttctggatgtgtaagt Alignment from Spaln_nt2Genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG ctttaatgtcagatcaatagtgccatgctcttccttggttctctcaccagATTACTATATTTGATGCTGATTCAAAAGAGCACGAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTTAAGGgtgaggattattcgcaacttctccctctccctgcttctggatgtgtaagt Alignment from Pairagon ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG ctttaatgtcagatcaatagtgccatgctcttccttggttctctcaccagATTACTATATTTGATGCTGATTCAAAAGAGCACGAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTTAAGGgtgaggattattcgcaacttctccctctccctgcttctggatgtgtaagt Alignment from Exonerate_protein2genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG ctttaatgtcagatcaatagtgccatgctcttccttggttctctcaccagATTACTATATTTGATGCTGATTCAAAAGAGCACGAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTTAAGGgtgaggattattcgcaacttctccctctccctgcttctggatgtgtaagt Alignment from Exonerate_coding2genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG ctttaatgtcagatcaatagtgccatgctcttccttggttctctcaccagATTACTATATTTGATGCTGATTCAAAAGAGCACGAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTTAAGGgtgaggattattcgcaacttctccctctccctgcttctggatgtgtaagt Alignment from GeneWise ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG ctttaatgtcagatcaatagtgccatgctcttccttggttctctcaccagATTACTATATTTGATGCTGATTCAAAAGAGCACGAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTTAAGGgtgaggattattcgcaacttctccctctccctgcttctggatgtgtaagt #### Trpm6_ID4474_12 --> 0 - 0 Original Alignment CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA tcaacatcctgagatgagtgaaatctctctccaggcccctctgacttcagCCTGGTGCTCTAGATCAGGCAATGCTTGACACATTGGTGATGGATCAAGTAGATTTGGTCAAACTTTTGTTAGAGAATGGGGTAAATCTCCATCGATTTCTCTCAATTCCACAACTTAAGCAGTTCTATAACACCgtgagcattggttagttcctagctagactcagaaacttagttgtgcatct Alignment from CESAR CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA tcaacatcctgagatgagtgaaatctctctccaggcccctctgacttcagCCTGGTGCTCTAGATCAGGCAATGCTTGACACATTGGTGATGGATCAAGTAGATTTGGTCAAACTTTTGTTAGAGAATGGGGTAAATCTCCATCGATTTCTCTCAATTCCACAACTTAAGCAGTTCTATAACACCgtgagcattggttagttcctagctagactcagaaacttagttgtgcatct Alignment from Spaln_aa2Genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA tcaacatcctgagatgagtgaaatctctctccaggcccctctgacttcagCCTGGTGCTCTAGATCAGGCAATGCTTGACACATTGGTGATGGATCAAGTAGATTTGGTCAAACTTTTGTTAGAGAATGGGGTAAATCTCCATCGATTTCTCTCAATTCCACAACTTAAGCAGTTCTATAACACCgtgagcattggttagttcctagctagactcagaaacttagttgtgcatct Alignment from Spaln_nt2Genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA tcaacatcctgagatgagtgaaatctctctccaggcccctctgacttcagCCTGGTGCTCTAGATCAGGCAATGCTTGACACATTGGTGATGGATCAAGTAGATTTGGTCAAACTTTTGTTAGAGAATGGGGTAAATCTCCATCGATTTCTCTCAATTCCACAACTTAAGCAGTTCTATAACACCgtgagcattggttagttcctagctagactcagaaacttagttgtgcatct Alignment from Pairagon CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA tcaacatcctgagatgagtgaaatctctctccaggcccctctgacttcagCCTGGTGCTCTAGATCAGGCAATGCTTGACACATTGGTGATGGATCAAGTAGATTTGGTCAAACTTTTGTTAGAGAATGGGGTAAATCTCCATCGATTTCTCTCAATTCCACAACTTAAGCAGTTCTATAACACCgtgagcattggttagttcctagctagactcagaaacttagttgtgcatct Alignment from Exonerate_protein2genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA tcaacatcctgagatgagtgaaatctctctccaggcccctctgacttcagCCTGGTGCTCTAGATCAGGCAATGCTTGACACATTGGTGATGGATCAAGTAGATTTGGTCAAACTTTTGTTAGAGAATGGGGTAAATCTCCATCGATTTCTCTCAATTCCACAACTTAAGCAGTTCTATAACACCgtgagcattggttagttcctagctagactcagaaacttagttgtgcatct Alignment from Exonerate_coding2genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA tcaacatcctgagatgagtgaaatctctctccaggcccctctgacttcagCCTGGTGCTCTAGATCAGGCAATGCTTGACACATTGGTGATGGATCAAGTAGATTTGGTCAAACTTTTGTTAGAGAATGGGGTAAATCTCCATCGATTTCTCTCAATTCCACAACTTAAGCAGTTCTATAACACCgtgagcattggttagttcctagctagactcagaaacttagttgtgcatct Alignment from GeneWise CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA tcaacatcctgagatgagtgaaatctctctccaggcccctctgacttcagCCTGGTGCTCTAGATCAGGCAATGCTTGACACATTGGTGATGGATCAAGTAGATTTGGTCAAACTTTTGTTAGAGAATGGGGTAAATCTCCATCGATTTCTCTCAATTCCACAACTTAAGCAGTTCTATAACACCgtgagcattggttagttcctagctagactcagaaacttagttgtgcatct #### Trpm6_ID4481_18 --> 0 - 0 Original Alignment ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG aaactacctgttccccttgctcaagtttgtcttttctctttcttttgcagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTACCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACTAAAGATAGTGCTTGTGTAgtaacatccaaccataggaggtctgtttgggcaaacatttaggtaccatc Alignment from CESAR ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG aaactacctgttccccttgctcaagtttgtcttttctctttcttttgcagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTACCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACTAAAGATAGTGCTTGTGTAgtaacatccaaccataggaggtctgtttgggcaaacatttaggtaccatc Alignment from Spaln_aa2Genome ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG aaactacctgttccccttgctcaagtttgtcttttctctttcttttgcagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTACCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACTAAAGATAGTGCTTGTGTAgtaacatccaaccataggaggtctgtttgggcaaacatttaggtaccatc Alignment from Spaln_nt2Genome ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG aaactacctgttccccttgctcaagtttgtcttttctctttcttttgcagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTACCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACTAAAGATAGTGCTTGTGTAgtaacatccaaccataggaggtctgtttgggcaaacatttaggtaccatc Alignment from Pairagon ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG aaactacctgttccccttgctcaagtttgtcttttctctttcttttgcagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTACCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACTAAAGATAGTGCTTGTGTAgtaacatccaaccataggaggtctgtttgggcaaacatttaggtaccatc Alignment from Exonerate_protein2genome ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG aaactacctgttccccttgctcaagtttgtcttttctctttcttttgcagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTACCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACTAAAGATAGTGCTTGTGTAgtaacatccaaccataggaggtctgtttgggcaaacatttaggtaccatc Alignment from Exonerate_coding2genome ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG aaactacctgttccccttgctcaagtttgtcttttctctttcttttgcagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTACCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACTAAAGATAGTGCTTGTGTAgtaacatccaaccataggaggtctgtttgggcaaacatttaggtaccatc Alignment from GeneWise ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG aaactacctgttccccttgctcaagtttgtcttttctctttcttttgcagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTACCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACTAAAGATAGTGCTTGTGTAgtaacatccaaccataggaggtctgtttgggcaaacatttaggtaccatc #### Trpm6_ID4482_19 --> 0 - 0 Original Alignment AAAGACTATGATTTGGAAAGAGGCCCTGATGAGAAACCGGATGAACCTCTGCATTTAGACTTAAGAAATGTGCCCCAGAGCCTCCCCTGGACCCGGAGAGTCTACGAGTTCTACAGCGCTCCGTTTGTCAAGTTTTGGTTCTACACG acttttgagaattgacacaggtaccctggttctcgttcctttcatttcagAAGGATCAGGAGTTGAAAAGGGGTCCTGATGATAAACCAGATGAATCTTTACATTTGGACTTAAGAAATGTGCCCCACAGCCTT---------CAGAGTATCTATGAGTTCCACAGTGCTCCATTTGTTAAGTTCTGGATCTATACAgtaatatactaggggcaataatgtcttgcacctgtggattttcagtcctt Alignment from CESAR AAAGACTATGATTTGGAAAGAGGCCCTGATGAGAAACCGGATGAACCTCTGCATTTAGACTTAAGAAATGTGCCCCAGAGCCTCCCCTGGACCCGGAGAGTCTACGAGTTCTACAGCGCTCCGTTTGTCAAGTTTTGGTTCTACACG acttttgagaattgacacaggtaccctggttctcgttcctttcatttcagAAGGATCAGGAGTTGAAAAGGGGTCCTGATGATAAACCAGATGAATCTTTACATTTGGACTTAAGAAATGTGCCCCACAGCCTT---------CAGAGTATCTATGAGTTCCACAGTGCTCCATTTGTTAAGTTCTGGATCTATACAgtaatatactaggggcaataatgtcttgcacctgtggattttcagtcctt Alignment from Spaln_aa2Genome AAAGACTATGATTTGGAAAGAGGCCCTGATGAGAAACCGGATGAACCTCTGCATTTAGACTTAAGAAATGTGCCCCAGAGCCTCCCCTGGACCCGGAGAGTCTACGAGTTCTACAGCGCTCCGTTTGTCAAGTTTTGGTTCTACACG acttttgagaattgacacaggtaccctggttctcgttcctttcatttcagAAGGATCAGGAGTTGAAAAGGGGTCCTGATGATAAACCAGATGAATCTTTACATTTGGACTTAAGAAATGTGCCCCACAGCCTT---------CAGAGTATCTATGAGTTCCACAGTGCTCCATTTGTTAAGTTCTGGATCTATACAgtaatatactaggggcaataatgtcttgcacctgtggattttcagtcctt Alignment from Spaln_nt2Genome AAAGACTATGATTTGGAAAGAGGCCCTGATGAGAAACCGGATGAACCTCTGCATTTAGACTTAAGAAATGTGCCCCAGAGCCTCCCCTGGACCCGGAGAGTCTACGAGTTCTACAGCGCTCCGTTTGTCAAGTTTTGGTTCTACACG acttttgagaattgacacaggtaccctggttctcgttcctttcatttcagAAGGATCAGGAGTTGAAAAGGGGTCCTGATGATAAACCAGATGAATCTTTACATTTGGACTTAAGAAATGTGCCCCACAGCCT---------TCAGAGTATCTATGAGTTCCACAGTGCTCCATTTGTTAAGTTCTGGATCTATACAgtaatatactaggggcaataatgtcttgcacctgtggattttcagtcctt Alignment from Pairagon AAAGACTATGATTTGGAAAGAGGCCCTGATGAGAAACCGGATGAACCTCTGCATTTAGACTTAAGAAATGTGCCCCAGAGCCTCCCCTGGACCCGGAGAG--TCTACGAGTTCTACAGCGCTCCGTTTGTCAAGTTTTGGTTCTACACG acttttgagaattgacacaggtaccctggttctcgttcctttcatttcagAAGGATCAGGAGTTGAAAAGGGGTCCTGATGATAAACCAGATGAATCTTTACATTTGGACTTAAGAAATGTGCCCCACAGCCTTC-----------AGAGTATCTATGAGTTCCACAGTGCTCCATTTGTTAAGTTCTGGATCTATACAgtaatatactaggggcaataatgtcttgcacctgtggattttcagtcctt Alignment from Exonerate_protein2genome AAAGACTATGATTTGGAAAGAGGCCCTGATGAGAAACCGGATGAACCTCTGCATTTAGACTTAAGAAATGTGCCCCAGAGCCTCCCCTGGACCCGGAGAGTCTACGAGTTCTACAGCGCTCCGTTTGTCAAGTTTTGGTTCTACACG acttttgagaattgacacaggtaccctggttctcgttcctttcatttcagAAGGATCAGGAGTTGAAAAGGGGTCCTGATGATAAACCAGATGAATCTTTACATTTGGACTTAAGAAATGTGCCCCACAGCCTT---------CAGAGTATCTATGAGTTCCACAGTGCTCCATTTGTTAAGTTCTGGATCTATACAgtaatatactaggggcaataatgtcttgcacctgtggattttcagtcctt Alignment from Exonerate_coding2genome AAAGACTATGATTTGGAAAGAGGCCCTGATGAGAAACCGGATGAACCTCTGCATTTAGACTTAAGAAATGTGCCCCAGAGCCTCCCCTGGACCCGGAGAGTCTACGAGTTCTACAGCGCTCCGTTTGTCAAGTTTTGGTTCTACACG acttttgagaattgacacaggtaccctggttctcgttcctttcatttcagAAGGATCAGGAGTTGAAAAGGGGTCCTGATGATAAACCAGATGAATCTTTACATTTGGACTTAAGAAATGTGCCCCACAGCCTT---------CAGAGTATCTATGAGTTCCACAGTGCTCCATTTGTTAAGTTCTGGATCTATACAgtaatatactaggggcaataatgtcttgcacctgtggattttcagtcctt Alignment from GeneWise AAAGACTATGATTTGGAAAGAGGCCCTGATGAGAAACCGGATGAACCTCTGCATTTAGACTTAAGAAATGTGCCCCAGAGCCTCCCCTGGACCCGGAGAGTCTACGAGTTCTACAGCGCTCCGTTTGTCAAGTTTTGGTTCTACACG acttttgagaattgacacaggtaccctggttctcgttcctttcatttcagAAGGATCAGGAGTTGAAAAGGGGTCCTGATGATAAACCAGATGAATCTTTACATTTGGACTTAAGAAATGTGCCCCACAGCCTT---------CAGAGTATCTATGAGTTCCACAGTGCTCCATTTGTTAAGTTCTGGATCTATACAgtaatatactaggggcaataatgtcttgcacctgtggattttcagtcctt #### Trpm6_ID4499_32 --> 2 - 1 Original Alignment agATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAg taagtgacctatttattactcctcttctacatgatattctctcccttcagagATCTCAACATCCCTAAAAAGCCCTCAGGAGCCTCACCGGCATTACTCAggtgagtcaagtgactgatttggtttgtttacactcaagacctcaatacct Alignment from CESAR agATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAg taagtgacctatttattactcctcttctacatgatattctctcccttcagagATCTCAACATCCCTAAAAAGCCCTCAGGAGCCTCACCGGCATTACTCAggtgagtcaagtgactgatttggtttgtttacactcaagacctcaatacct Alignment from Spaln_aa2Genome AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG taagtgacctatttattactcctcttctacatgatattctctcccttcagAGATCTCAACATCCCTAAAAAGCCCTCAGGAGCCTCACCGGCATTACTCAGgtgagtcaagtgactgatttggtttgtttacactcaagacctcaatacct Alignment from Spaln_nt2Genome AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG taagtgacctatttattactcctcttctacatgatattctctcccttcagAGATCTCAACATCCCTAAAAAGCCCTCAGGAGCCTCACCGGCATTACTCAGgtgagtcaagtgactgatttggtttgtttacactcaagacctcaatacct Alignment from Pairagon AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG taagtgacctatttattactcctcttctacatgatattctctcccttcagAGATCTCAACATCCCTAAAAAGCCCTCAGGAGCCTCACCGGCATTACTCAGgtgagtcaagtgactgatttggtttgtttacactcaagacctcaatacct Alignment from Exonerate_protein2genome taagtgacctatttattactcctcttctacatgatattctctcccttcagagatctcaacatccctaaaaagccctcaggagcctcaccggcattactcaggtgagtcaagtgactgatttggtttgtttacactcaagacctcaatacct Alignment from Exonerate_coding2genome GAAGTCCAAATGAAGTTCACAAGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG gtgacctatttattactcctcttctacatGATAT---TCTCTCCCTTCAGAGATCTCAACATCCCTAAAAAGCCCTCAGGAGCCTCACCGGCATTACTCAGgtgagtcaagtgactgatttggtttgtttacactcaagacctcaatacct Alignment from GeneWise AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG taagtgacctatttattactcctcttctacatgatattctctcccttcagAGATCTCAACATCCCTAAAAAGCCCTCAGGAGCCTCACCGGCATTACTCAGgtgagtcaagtgactgatttggtttgtttacactcaagacctcaatacct #### Trpm6_ID4505_35 --> 0 - 2 Original Alignment GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAag agagagtgggcttgccttgtatcattttcgatccctaatcttctctgcagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTCATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAaggtgagtgaagagttggactaaagtgcatataataacaaagtgataccttc Alignment from CESAR GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAag agagagtgggcttgccttgtatcattttcgatccctaatcttctctgcagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTCATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAaggtgagtgaagagttggactaaagtgcatataataacaaagtgataccttc Alignment from Spaln_aa2Genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgccttgtatcattttcgatccctaatcttctctgcagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTCATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgagtgaagagttggactaaagtgcatataataacaaagtgataccttc Alignment from Spaln_nt2Genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgccttgtatcattttcgatccctaatcttctctgcagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTCATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgagtgaagagttggactaaagtgcatataataacaaagtgataccttc Alignment from Pairagon GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgccttgtatcattttcgatccctaatcttctctgcagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTCATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgagtgaagagttggactaaagtgcatataataacaaagtgataccttc Alignment from Exonerate_protein2genome agagagtgggcttgccttgtatcattttcgatccctaatcttctctgcaggaaattcaacagcaaagagccgcccaaaaactcatctatacctttaaccaagtgaaaccacaatccatcccctacacaccaaggtgagtgaagagttggactaaagtgcatataataacaaagtgataccttc Alignment from Exonerate_coding2genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgccttgtatcattttcgatccctaatcttctctgcagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTCATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgagtgaagagttggactaaagtgcatataataacaaagtgataccttc Alignment from GeneWise GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgccttgtatcattttcgatccctaatcttctctgcagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTCATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgagtgaagagttggactaaagtgcatataataacaaagtgataccttc #### Trpm6_ID4510_37 --> 2 - 2 Original Alignment gtGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAAca aaagtgggcgcccagaacttgaaaagcatctcatgctgttctttctgcaggtGTTGGAGAGAACTTAACAGATCCCTCAGTTATAAAACCAGAGGACAAAcagtgggcctgcttttagccaattgttagcctgttgtacattcagattgccc Alignment from CESAR gtGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAAca aaagtgggcgcccagaacttgaaaagcatctcatgctgttctttctgcaggtGTTGGAGAGAACTTAACAGATCCCTCAGTTATAAAACCAGAGGACAAAcagtgggcctgcttttagccaattgttagcctgttgtacattcagattgccc Alignment from Spaln_aa2Genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA aaagtgggcgcccagaacttgaaaagcatctcatgctgttctttctgcagGTGTTGGAGAGAACTTAACAGATCCCTCAGTTATAAAACCAGAGGACAAACAgtgggcctgcttttagccaattgttagcctgttgtacattcagattgccc Alignment from Spaln_nt2Genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA aaagtgggcgcccagaacttgaaaagcatctcatgctgttctttctgcagGTGTTGGAGAGAACTTAACAGATCCCTCAGTTATAAAACCAGAGGACAAACAgtgggcctgcttttagccaattgttagcctgttgtacattcagattgccc Alignment from Pairagon GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA aaagtgggcgcccagaacttgaaaagcatctcatgctgttctttctgcagGTGTTGGAGAGAACTTAACAGATCCCTCAGTTATAAAACCAGAGGACAAACAgtgggcctgcttttagccaattgttagcctgttgtacattcagattgccc Alignment from Exonerate_protein2genome aaagtgggcgcccagaacttgaaaagcatctcatgctgttctttctgcaggtgttggagagaacttaacagatccctcagttataaaaccagaggacaaacagtgggcctgcttttagccaattgttagcctgttgtacattcagattgccc Alignment from Exonerate_coding2genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA aaagtgggcgcccagaacttgaaaagcatctcatgctgttctttctgcagGTGTTGGAGAGAACTTAACAGATCCCTCAGTTATAAAACCAGAGGACAAACAgtgggcctgcttttagccaattgttagcctgttgtacattcagattgccc Alignment from GeneWise GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA aaagtgggcgcccagaacttgaaaagcatctcatgctgttctttctgcagGTGTTGGAGAGAACTTAACAGATCCCTCAGTTATAAAACCAGAGGACAAACAgtgggcctgcttttagccaattgttagcctgttgtacattcagattgccc #### Trpt1_ID1979_2 --> 0 - 1 Original Alignment GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg acttgcaggatctaagtgtgcccgttcctatgtcatttctgtttccacagGACCGAAATGTGCAGCTATCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTGCCCATGCAAGCTggtaagcaaattagatcgggcagccaaactgcctgtaaacaataggctgct Alignment from CESAR GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg acttgcaggatctaagtgtgcccgttcctatgtcatttctgtttccacagGACCGAAATGTGCAGCTATCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTGCCCATGCAAGCTggtaagcaaattagatcgggcagccaaactgcctgtaaacaataggctgct Alignment from Spaln_aa2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acttgcaggatctaagtgtgcccgttcctatgtcatttctgtttccacagGACCGAAATGTGCAGCTATCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTGCCCATGCAAGCTGgtaagcaaattagatcgggcagccaaactgcctgtaaacaataggctgct Alignment from Spaln_nt2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acttgcaggatctaagtgtgcccgttcctatgtcatttctgtttccacagGACCGAAATGTGCAGCTATCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTGCCCATGCAAGCTGgtaagcaaattagatcgggcagccaaactgcctgtaaacaataggctgct Alignment from Pairagon GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acttgcaggatctaagtgtgcccgttcctatgtcatttctgtttccacagGACCGAAATGTGCAGCTATCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTGCCCATGCAAGCTGgtaagcaaattagatcgggcagccaaactgcctgtaaacaataggctgct Alignment from Exonerate_protein2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acttgcaggatctaagtgtgcccgttcctatgtcatttctgtttccacagGACCGAAATGTGCAGCTATCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTGCCCATGCAAGCTGgtaagcaaattagatcgggcagccaaactgcctgtaaacaataggctgct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acttgcaggatctaagtgtgcccgttcctatgtcatttctgtttccacagGACCGAAATGTGCAGCTATCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTGCCCATGCAAGCTGgtaagcaaattagatcgggcagccaaactgcctgtaaacaataggctgct #### Trpt1_ID1982_5 --> 2 - 1 Original Alignment gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg ttgatagaagacacctcacttcagatgtgtattttttttttcaattttaggtGTTTGTCCAAAT------GTAACTGTATTGATTGATGGACCACTAGCTCTCACAggtgagtatcgccccttaaggaggctattgtgtaaggcagtctccaaaatc Alignment from CESAR gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg ttgatagaagacacctcacttcagatgtgtattttttttttcaattttaggtGTTTGTCCAAAT------GTAACTGTATTGATTGATGGACCACTAGCTCTCACAggtgagtatcgccccttaaggaggctattgtgtaaggcagtctccaaaatc Alignment from Spaln_aa2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG ttgatagaagacacctcacttcagatgtgtattttttttttcaattttagGTGTTTGTCCAAAT------GTAACTGTATTGATTGATGGACCACTAGCTCTCACAGgtgagtatcgccccttaaggaggctattgtgtaaggcagtctccaaaatc Alignment from Spaln_nt2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG ttgatagaagacacctcacttcagatgtgtattttttttttcaattttagGTGTTTGTCCAAAT------GTAACTGTATTGATTGATGGACCACTAGCTCTCACAGgtgagtatcgccccttaaggaggctattgtgtaaggcagtctccaaaatc Alignment from Pairagon GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG ttgatagaagacacctcacttcagatgtgtattttttttttcaattttagGTGTTTGTCCAAAT------GTAACTGTATTGATTGATGGACCACTAGCTCTCACAGgtgagtatcgccccttaaggaggctattgtgtaaggcagtctccaaaatc Alignment from Exonerate_protein2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG ttgatagaagacacctcacttcagatgtgtattttttttttcaattttagGTGTTTGTCCAAAT------GTAACTGTATTGATTGATGGACCACTAGCTCTCACAGgtgagtatcgccccttaaggaggctattgtgtaaggcagtctccaaaatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTCATCGATGGACCCCTAGCCCTCACAG TTGATAGAAGACACCTCACTTCAGATGTgtattttttttttcaattttaggtgtttgtccaaatgtaactgtattgattgatggaccactagctctcacaggtgagtatcgccccttaaggaggctattgtgtaaggcagtctccaaaatc #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagACTAATGCCTGTCTTACAGGAAATTGGCAA------CAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCAGAAGCACaggtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagACTAATGCCTGTCTTACAGGAAATTGGCAA------CAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCAGAAGCACaggtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from Spaln_aa2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagACTAATGCCTGTCTTACAGGAAATTGGCAA------CAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCAGAAGCACAGgtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from Spaln_nt2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagACTAATGCCTGTCTTACAGGAAATTGGC------AACAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCAGAAGCACAGgtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from Pairagon TAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagactaatgcctgtcttacaggaaattggcaacaggttttatctggactaggtcTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCAGAAGCACAGgtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from Exonerate_protein2genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagACTAATGCCTGTCTTACAGGAAAT------TGGCAACAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCAGAAGCACAGgtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from Exonerate_coding2genome aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctagactaatgcctgtcttacaggaaattggcaacaggttttatctggactaggtctagatgatgatcagctattagctgaggcaggtattgctgaaagcactccccagaagcacaggtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aacaagccttatgtcatgtgtcttagtttacttcttttcttctcccctag---ACTAATGCCTGTCTTACAGGAAAT------TGGCAACAGGTTTTATCTGGACTAGGTCTAGATGATGATCAGCTATTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCAGAAGCACAGgtaaggaatgttaggcatggtgtgctaaatcaggttatacatgtcctgtc #### Tut1_ID2552_5 --> 0 - 2 Original Alignment CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCA---CTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACcg tcatcgataccacactggtatatggtacttgtttgtttggctccctttagCCAGACTCAAAGGCCCCAGAAGTCCCAAAGACTTTATCCCTGGACTCTGCA------TCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCT---CCCCTTGACCCCTCTGTACCCCCCACTTCAGTACAAGAATCTGGTTCCTTAGACTTTGACACTCCATTTTCCCTGGCGGCACAGACCCCTGGC---TCATTGGGCTCTGACACGGTCTCATCACTTGAGTCTTTCCCCCCTGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAAGTTAGCAGTAGTGAAAGAAGCTTTCAAGGATGAAAAAGAGAAGACAGCTGCCGTGCTAGCATTGGTGGGATTGATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCAGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAACcggtgagtttacatgggatgtgaatctccagagctgtagcctggaaattacc Alignment from CESAR CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGAC---TCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACcg tcatcgataccacactggtatatggtacttgtttgtttggctccctttagCCAGACTCAAAGGCCCCAGAAGTCCCAAAGACTTTATCCCTGGACTCT------GCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCT---CCCCTTGACCCCTCTGTACCCCCCACTTCAGTACAAGAATCTGGTTCCTTAGACTTTGACACTCCATTTTCCCTGGCGGCACAGACCCCTGGCTCA---TTGGGCTCTGACACGGTCTCATCACTTGAGTCTTTCCCCCCTGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAAGTTAGCAGTAGTGAAAGAAGCTTTCAAGGATGAAAAAGAGAAGACAGCTGCCGTGCTAGCATTGGTGGGATTGATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCAGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAACcggtgagtttacatgggatgtgaatctccagagctgtagcctggaaattacc Alignment from Spaln_aa2Genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcatcgataccacactggtatatggtacttgtttgtttggctccctttagCCAGACTCAAAGGCCCCAGAAGTCCCAAAGACTTTATCCCTGGACTCT------GCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCTCCCCTTGACCCCTCTGTACCCCCCACTTCAGTACAAGAATCTGGTTCCTTAGACTTTGACACTCCATTTTCCCTGGCGGCACAGACCCCTGGCTCA---TTGGGCTCTGACACGGTCTCATCACTTGAGTCTTTCCCCCCTGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAAGTTAGCAGTAGTGAAAGAAGCTTTCAAGGATGAAAAAGAGAAGACAGCTGCCGTGCTAGCATTGGTGGGATTGATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCAGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAACCGgtgagtttacatgggatgtgaatctccagagctgtagcctggaaattacc Alignment from Spaln_nt2Genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcatcgataccacactggtatatggtacttgtttgtttggctccctttagCCAGACTCAAAGGCCCCAGAAGTCCCAAAGACTTTATCCCTGGACTC------TGCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCTCCCCTTGACCCCTCTGTACCCCCCACTTCAGTACAAGAATCTGGTTCCTTAGACTTTGACACTCCATTTTCCCTGGCGGCACAGACCCCTGGCT---CATTGGGCTCTGACACGGTCTCATCACTTGAGTCTTTCCCCCCTGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAAGTTAGCAGTAGTGAAAGAAGCTTTCAAGGATGAAAAAGAGAAGACAGCTGCCGTGCTAGCATTGGTGGGATTGATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCAGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAACCGgtgagtttacatgggatgtgaatctccagagctgtagcctggaaattacc Alignment from Pairagon CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTT-------CTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcatcgataccacactggtatatggtacttgtttgtttggctccctttagCCAGACTCAAAGGCCCCAGAAGTCCCAAAGACTTTATCCCTGGACTC------TGCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCTCCCCTTGACCCCTCTGTAC-------CCCCCACTTCAGTACAAGAATCTGGTTCCTTAGACTTTGACACTCCATTTTCCCTGGCGGCACAGACCCCTGGCT---CATTGGGCTCTGACACGGTCTCATCACTTGAGTCTTTCCCCCCTGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAAGTTAGCAGTAGTGAAAGAAGCTTTCAAGGATGAAAAAGAGAAGACAGCTGCCGTGCTAGCATTGGTGGGATTGATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCAGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAACCGgtgagtttacatgggatgtgaatctccagagctgtagcctggaaattacc Alignment from Exonerate_protein2genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcatcgataccacactggtatatggtacttgtttgtttggctccctttagCCAGACTCAAAGGCCCCAGAAGTCCCAAAGACTTTATCCCTGGACTCT------GCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCTCCCCTTGACCCCTCTGTACCCCCCACTTCAGTACAAGAATCTGGTTCCTTAGACTTTGACACTCCATTTTCCCTGGCGGCACAGACCCCTGGCTCA---TTGGGCTCTGACACGGTCTCATCACTTGAGTCTTTCCCCCCTGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAAGTTAGCAGTAGTGAAAGAAGCTTTCAAGGATGAAAAAGAGAAGACAGCTGCCGTGCTAGCATTGGTGGGATTGATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCAGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAACCGgtgagtttacatgggatgtgaatctccagagctgtagcctggaaattacc Alignment from Exonerate_coding2genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcatcgataccacactggtatatggtacttgtttgtttggctccctttagCCAGACTCAAAGGCCCCAGAAGTCCCAAAGACTTTATCCCTGGACTCT------GCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCTCCCCTTGACCCCTCTGTACCCCCCACTTCAGTACAAGAATCTGGTTCCTTAGACTTTGACACTCCATTTTCCCTGGCGGCACAGACCCCTGGCTCA---TTGGGCTCTGACACGGTCTCATCACTTGAGTCTTTCCCCCCTGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAAGTTAGCAGTAGTGAAAGAAGCTTTCAAGGATGAAAAAGAGAAGACAGCTGCCGTGCTAGCATTGGTGGGATTGATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCAGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAACCGgtgagtttacatgggatgtgaatctccagagctgtagcctggaaattacc Alignment from GeneWise CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGAC---TCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcatcgataccacactggtatatggtacttgtttgtttggctccctttagCCAGACTCAAAGGCCCCAGAAGTCCCAAAGACTTTATCCCTGGACTCT------GCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCT---CCCCTTGACCCCTCTGTACCCCCCACTTCAGTACAAGAATCTGGTTCCTTAGACTTTGACACTCCATTTTCCCTGGCGGCACAGACCCCTGGCTCA---TTGGGCTCTGACACGGTCTCATCACTTGAGTCTTTCCCCCCTGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAAGTTAGCAGTAGTGAAAGAAGCTTTCAAGGATGAAAAAGAGAAGACAGCTGCCGTGCTAGCATTGGTGGGATTGATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCAGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAACCGgtgagtttacatgggatgtgaatctccagagctgtagcctggaaattacc #### Ubxn1_ID2441_5 --> 1 - 2 Original Alignment aATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGAGAAGCTTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAGGAGGGAAAAGGCTGAAGAGTTAGCTGCCag actttcccagtccttaatcaattcttcattttgtaaacattatcttctaggATGTTGGATCTCGTAGCTCAAAAACAGCAGGAACGCGAAGAGAGAGAGGAGCGGGAGGCATTAGAACAAGAGAAGCAACGGAGGAGACAAGGGCAAGAGCTCTCAATTGCACACCAAAGATTACAAGAAGAGGAGATGTGCCAGGCTGCAGAGGAGCGTCAGAAGGATAAGGCCAAAGAGTTTGCAGCTaggtatgtaatctcacgctgcaatgtagtcgtaaatcctatttcacccatta Alignment from CESAR aATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGAGAAGCTTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAGGAGGGAAAAGGCTGAAGAGTTAGCTGCCag actttcccagtccttaatcaattcttcattttgtaaacattatcttctaggATGTTGGATCTCGTAGCTCAAAAACAGCAGGAACGCGAAGAGAGAGAGGAGCGGGAGGCATTAGAACAAGAGAAGCAACGGAGGAGACAAGGGCAAGAGCTCTCAATTGCACACCAAAGATTACAAGAAGAGGAGATGTGCCAGGCTGCAGAGGAGCGTCAGAAGGATAAGGCCAAAGAGTTTGCAGCTaggtatgtaatctcacgctgcaatgtagtcgtaaatcctatttcacccatta Alignment from Spaln_aa2Genome AATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGAGAAGCTTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAGGAGGGAAAAGGCTGAAGAGTTAGCTGCCAG actttcccagtccttaatcaattcttcattttgtaaacattatcttctagGATGTTGGATCTCGTAGCTCAAAAACAGCAGGAACGCGAAGAGAGAGAGGAGCGGGAGGCATTAGAACAAGAGAAGCAACGGAGGAGACAAGGGCAAGAGCTCTCAATTGCACACCAAAGATTACAAGAAGAGGAGATGTGCCAGGCTGCAGAGGAGCGTCAGAAGGATAAGGCCAAAGAGTTTGCAGCTAGgtatgtaatctcacgctgcaatgtagtcgtaaatcctatttcacccatta Alignment from Spaln_nt2Genome AATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGAGAAGCTTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAGGAGGGAAAAGGCTGAAGAGTTAGCTGCCAG actttcccagtccttaatcaattcttcattttgtaaacattatcttctagGATGTTGGATCTCGTAGCTCAAAAACAGCAGGAACGCGAAGAGAGAGAGGAGCGGGAGGCATTAGAACAAGAGAAGCAACGGAGGAGACAAGGGCAAGAGCTCTCAATTGCACACCAAAGATTACAAGAAGAGGAGATGTGCCAGGCTGCAGAGGAGCGTCAGAAGGATAAGGCCAAAGAGTTTGCAGCTAGgtatgtaatctcacgctgcaatgtagtcgtaaatcctatttcacccatta Alignment from Pairagon AATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGAGAAGCTTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAGGAGGGAAAAGGCTGAAGAGTTAGCTGCCAG actttcccagtccttaatcaattcttcattttgtaaacattatcttctagGATGTTGGATCTCGTAGCTCAAAAACAGCAGGAACGCGAAGAGAGAGAGGAGCGGGAGGCATTAGAACAAGAGAAGCAACGGAGGAGACAAGGGCAAGAGCTCTCAATTGCACACCAAAGATTACAAGAAGAGGAGATGTGCCAGGCTGCAGAGGAGCGTCAGAAGGATAAGGCCAAAGAGTTTGCAGCTAGgtatgtaatctcacgctgcaatgtagtcgtaaatcctatttcacccatta Alignment from Exonerate_protein2genome AATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGAGAAGCTTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAGGAGGGAAAAGGCTGAAGAGTTAGCTGCCAG actttcccagtccttaatcaattcttcattttgtaaacattatcttctagGATGTTGGATCTCGTAGCTCAAAAACAGCAGGAACGCGAAGAGAGAGAGGAGCGGGAGGCATTAGAACAAGAGAAGCAACGGAGGAGACAAGGGCAAGAGCTCTCAATTGCACACCAAAGATTACAAGAAGAGGAGATGTGCCAGGCTGCAGAGGAGCGTCAGAAGGATAAGGCCAAAGAGTTTGCAGCTAGgtatgtaatctcacgctgcaatgtagtcgtaaatcctatttcacccatta Alignment from Exonerate_coding2genome AATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGAGAAGCTTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAGGAGGGAAAAGGCTGAAGAGTTAGCTGCCAG actttcccagtccttaatcaattcttcattttgtaaacattatcttctagGATGTTGGATCTCGTAGCTCAAAAACAGCAGGAACGCGAAGAGAGAGAGGAGCGGGAGGCATTAGAACAAGAGAAGCAACGGAGGAGACAAGGGCAAGAGCTCTCAATTGCACACCAAAGATTACAAGAAGAGGAGATGTGCCAGGCTGCAGAGGAGCGTCAGAAGGATAAGGCCAAAGAGTTTGCAGCTAGgtatgtaatctcacgctgcaatgtagtcgtaaatcctatttcacccatta Alignment from GeneWise AATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGAGAAGCTTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAGGAGGGAAAAGGCTGAAGAGTTAGCTGCCAG actttcccagtccttaatcaattcttcattttgtaaacattatcttctagGATGTTGGATCTCGTAGCTCAAAAACAGCAGGAACGCGAAGAGAGAGAGGAGCGGGAGGCATTAGAACAAGAGAAGCAACGGAGGAGACAAGGGCAAGAGCTCTCAATTGCACACCAAAGATTACAAGAAGAGGAGATGTGCCAGGCTGCAGAGGAGCGTCAGAAGGATAAGGCCAAAGAGTTTGCAGCTAGgtatgtaatctcacgctgcaatgtagtcgtaaatcctatttcacccatta #### Ubxn1_ID2443_7 --> 0 - 0 Original Alignment TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG acgttcaagcacacacctcaatatggtactgtttttcttgttctccctagTGTGGTGGCAGTGTGGGTTCTCGAACGTCTCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGATCAGTGTCGTACACAAgtaacctctccaagtgaccatcctcctcaggactttcatgtaactctcta Alignment from CESAR TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG acgttcaagcacacacctcaatatggtactgtttttcttgttctccctagTGTGGTGGCAGTGTGGGTTCTCGAACGTCTCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGATCAGTGTCGTACACAAgtaacctctccaagtgaccatcctcctcaggactttcatgtaactctcta Alignment from Spaln_aa2Genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG acgttcaagcacacacctcaatatggtactgtttttcttgttctccctagTGTGGTGGCAGTGTGGGTTCTCGAACGTCTCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGATCAGTGTCGTACACAAgtaacctctccaagtgaccatcctcctcaggactttcatgtaactctcta Alignment from Spaln_nt2Genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG acgttcaagcacacacctcaatatggtactgtttttcttgttctccctagTGTGGTGGCAGTGTGGGTTCTCGAACGTCTCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGATCAGTGTCGTACACAAgtaacctctccaagtgaccatcctcctcaggactttcatgtaactctcta Alignment from Pairagon TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG acgttcaagcacacacctcaatatggtactgtttttcttgttctccctagTGTGGTGGCAGTGTGGGTTCTCGAACGTCTCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGATCAGTGTCGTACACAAgtaacctctccaagtgaccatcctcctcaggactttcatgtaactctcta Alignment from Exonerate_protein2genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG acgttcaagcacacacctcaatatggtactgtttttcttgttctccctagTGTGGTGGCAGTGTGGGTTCTCGAACGTCTCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGATCAGTGTCGTACACAAgtaacctctccaagtgaccatcctcctcaggactttcatgtaactctcta Alignment from Exonerate_coding2genome GGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAGTATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCT---ACTAAGCGGGAGTATGACCAGTGTCGTATACAG ACGTTCAAGCACACACCTCAATATGGTACTGTTTTTCTTGTTCTCCCTAGTGTGGTGGCAGTGTGGGTTCTCGAACGTCTCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGATCAGTGTCGTACACAAgtaacctctccaagtgaccatcctcctcaggactttcatgtaactctcta Alignment from GeneWise TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG acgttcaagcacacacctcaatatggtactgtttttcttgttctccctagTGTGGTGGCAGTGTGGGTTCTCGAACGTCTCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGATCAGTGTCGTACACAAgtaacctctccaagtgaccatcctcctcaggactttcatgtaactctcta #### Uhrf2_ID6375_6 --> 2 - 2 Original Alignment ggAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACtg acaatggtggtacaagtgtttggttctactttgtctttgggtaaatccagggAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCAGATAAGACCTGTCATACTTGTTCATGTCACAAATGTGGAGAG---CAAGGTCCCAACATGTGGCTGCTCTGTGAT---GGCAATATGTCCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATtggtaacataattccagtacagtggaggatcagcacttgattcaacctgcaa Alignment from CESAR ggAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACtg acaatggtggtacaagtgtttggttctactttgtctttgggtaaatccagggAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCAGATAAGACCTGTCATACTTGTTCATGTCACAAATGTGGAGAG---CAAGGTCCCAACATGTGGCTGCTCTGTGAT---GGCAATATGTCCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATtggtaacataattccagtacagtggaggatcagcacttgattcaacctgcaa Alignment from Spaln_aa2Genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG acaatggtggtacaagtgtttggttctactttgtctttgggtaaatccagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCAGATAAGACCTGTCATACTTGTTCATGTCACAAATGTGGAGAGCAA---GGTCCCAACATGTGGCTGCTCTGTGATGGC---AATATGTCCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtaacataattccagtacagtggaggatcagcacttgattcaacctgcaa Alignment from Spaln_nt2Genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG acaatggtggtacaagtgtttggttctactttgtctttgggtaaatccagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCAGATAAGACCTGTCATACTTGTTCATGTCACAAATGTGGAG---AGCAAGGTCCCAACATGTGGCTGCTCTGTGATG---GCAATATGTCCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtaacataattccagtacagtggaggatcagcacttgattcaacctgcaa Alignment from Pairagon GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG acaatggtggtacaagtgtttggttctactttgtctttgggtaaatccagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCAGATAAGACCTGTCATACTTGTTCATGTCACAAATGTGGAG---AGCAAGGTCCCAACATGTGGCTGCTCTGTGATG---GCAATATGTCCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtaacataattccagtacagtggaggatcagcacttgattcaacctgcaa Alignment from Exonerate_protein2genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG acaatggtggtacaagtgtttggttctactttgtctttgggtaaatccagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCAGATAAGACCTGTCATACTTGTTCATGTCACAAATGTGGAGAG---CAAGGTCCCAACATGTGGCTGCTCTGTGATGGC---AATATGTCCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtaacataattccagtacagtggaggatcagcacttgattcaacctgcaa Alignment from Exonerate_coding2genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG acaatggtggtacaagtgtttggttctactttgtctttgggtaaatccagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCAGATAAGACCTGTCATACTTGTTCATGTCACAAATGTGGAGAG---CAAGGTCCCAACATGTGGCTGCTCTGTGATGGC---AATATGTCCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtaacataattccagtacagtggaggatcagcacttgattcaacctgcaa Alignment from GeneWise GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG acaatggtggtacaagtgtttggttctactttgtctttgggtaaatccagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCAGATAAGACCTGTCATACTTGTTCATGTCACAAATGTGGAGAG---CAAGGTCCCAACATGTGGCTGCTCTGTGATGGC---AATATGTCCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtaacataattccagtacagtggaggatcagcacttgattcaacctgcaa #### Uhrf2_ID6384_14 --> 2 - 0 Original Alignment atGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG cactgcagtaaagaagtggggggctgatatataccaatgttcttttaaagatGAATGCCCAGGTGACACCCAAGTGCTCAAGTCATTAGACTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCCTACGTAGAAGGACCAgtgaggctaccctttataaattgcatagataacaagacattttgactcat Alignment from CESAR atGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG cactgcagtaaagaagtggggggctgatatataccaatgttcttttaaagatGAATGCCCAGGTGACACCCAAGTGCTCAAGTCATTAGACTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCCTACGTAGAAGGACCAgtgaggctaccctttataaattgcatagataacaagacattttgactcat Alignment from Spaln_aa2Genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG cactgcagtaaagaagtggggggctgatatataccaatgttcttttaaagATGAATGCCCAGGTGACACCCAAGTGCTCAAGTCATTAGACTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCCTACGTAGAAGGACCAgtgaggctaccctttataaattgcatagataacaagacattttgactcat Alignment from Spaln_nt2Genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG cactgcagtaaagaagtggggggctgatatataccaatgttcttttaaagATGAATGCCCAGGTGACACCCAAGTGCTCAAGTCATTAGACTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCCTACGTAGAAGGACCAgtgaggctaccctttataaattgcatagataacaagacattttgactcat Alignment from Pairagon ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG cactgcagtaaagaagtggggggctgatatataccaatgttcttttaaagATGAATGCCCAGGTGACACCCAAGTGCTCAAGTCATTAGACTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCCTACGTAGAAGGACCAgtgaggctaccctttataaattgcatagataacaagacattttgactcat Alignment from Exonerate_protein2genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG cactgcagtaaagaagtggggggctgatatataccaatgttcttttaaagATGAATGCCCAGGTGACACCCAAGTGCTCAAGTCATTAGACTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCCTACGTAGAAGGACCAgtgaggctaccctttataaattgcatagataacaagacattttgactcat Alignment from Exonerate_coding2genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG cactgcagtaaagaagtggggggctgatatataccaatgttcttttaaagATGAATGCCCAGGTGACACCCAAGTGCTCAAGTCATTAGACTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCCTACGTAGAAGGACCAgtgaggctaccctttataaattgcatagataacaagacattttgactcat Alignment from GeneWise ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG cactgcagtaaagaagtggggggctgatatataccaatgttcttttaaagATGAATGCCCAGGTGACACCCAAGTGCTCAAGTCATTAGACTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCCTACGTAGAAGGACCAgtgaggctaccctttataaattgcatagataacaagacattttgactcat #### Vegfb_ID1955_5 --> 1 - 2 Original Alignment aCCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACag gaccctagtctgaacctggtggtctgactggagttctcctttctctgcagaCCTAAAAAGAAGGAGTCTACTGTTCGGCCTGACcggtgggtctgttcctgcatcttttcatgcattaggggagataaaaaagtac Alignment from CESAR aCCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACag gaccctagtctgaacctggtggtctgactggagttctcctttctctgcagaCCTAAAAAGAAGGAGTCTACTGTTCGGCCTGACcggtgggtctgttcctgcatcttttcatgcattaggggagataaaaaagtac Alignment from Spaln_aa2Genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG gaccctagtctgaacctggtggtctgactggagttctcctttctctgcagACCTAAAAAGAAGGAGTCTACTGTTCGGCCTGACCGgtgggtctgttcctgcatcttttcatgcattaggggagataaaaaagtac Alignment from Spaln_nt2Genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG gaccctagtctgaacctggtggtctgactggagttctcctttctctgcagACCTAAAAAGAAGGAGTCTACTGTTCGGCCTGACCGgtgggtctgttcctgcatcttttcatgcattaggggagataaaaaagtac Alignment from Pairagon ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG gaccctagtctgaacctggtggtctgactggagttctcctttctctgcagACCTAAAAAGAAGGAGTCTACTGTTCGGCCTGACCGgtgggtctgttcctgcatcttttcatgcattaggggagataaaaaagtac Alignment from Exonerate_protein2genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG gaccctagtctgaacctggtggtctgactggagttctcctttctctgcagACCTAAAAAGAAGGAGTCTACTGTTCGGCCTGACCGgtgggtctgttcctgcatcttttcatgcattaggggagataaaaaagtac Alignment from Exonerate_coding2genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG gaccctagtctgaacctggtggtctgactggagttctcctttctctgcagACCTAAAAAGAAGGAGTCTACTGTTCGGCCTGACCGgtgggtctgttcctgcatcttttcatgcattaggggagataaaaaagtac Alignment from GeneWise gaccctagtctgaacctggtggtctgactggagttctcctttctctgcagacctaaaaagaaggagtctactgttcggcctgaccggtgggtctgttcctgcatcttttcatgcattaggggagataaaaaagtac #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCaggtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from CESAR ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCaggtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from Pairagon ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacactaaggtttttatctactgcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtgagtgacaattccaggacccatgctctggcatgtgttaagactgcatg #### Vegfb_ID1958_2 --> 0 - 1 Original Alignment GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAg tagatgcttggtaggagatggctccttgcacactcagtgtgttctgccagGCCCCTGTGTCACAGTTTGTTGGTCCCAGTCACCAAAAGAAAtgtaaagaagtaggtagatgttagttttgaatttggctagccaagtgtgcc Alignment from CESAR GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAg tagatgcttggtaggagatggctccttgcacactcagtgtgttctgccagGCCCCTGTGTCACAGTTTGTTGGTCCCAGTCACCAAAAGAAAtgtaaagaagtaggtagatgttagttttgaatttggctagccaagtgtgcc Alignment from Spaln_aa2Genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG tagatgcttggtaggagatggctccttgcacactcagtgtgttctgccagGCCCCTGTGTCACAGTTTGTTGGTCCCAGTCACCAAAAGAAATgtaaagaagtaggtagatgttagttttgaatttggctagccaagtgtgcc Alignment from Spaln_nt2Genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG tagatgcttggtaggagatggctccttgcacactcagtgtgttctgccagGCCCCTGTGTCACAGTTTGTTGGTCCCAGTCACCAAAAGAAATgtaaagaagtaggtagatgttagttttgaatttggctagccaagtgtgcc Alignment from Pairagon GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG tagatgcttggtaggagatggctccttgcacactcagtgtgttctgccagGCCCCTGTGTCACAGTTTGTTGGTCCCAGTCACCAAAAGAAATgtaaagaagtaggtagatgttagttttgaatttggctagccaagtgtgcc Alignment from Exonerate_protein2genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG tagatgcttggtaggagatggctccttgcacactcagtgtgttctgccagGCCCCTGTGTCACAGTTTGTTGGTCCCAGTCACCAAAAGAAATgtaaagaagtaggtagatgttagttttgaatttggctagccaagtgtgcc Alignment from Exonerate_coding2genome CAGGCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG tagatgcttggtaggagatggctccttgcacactcagtgtgttctgcCAGGCCCCTGTGTCACAGTTTGTTGGTCCCAGTCACCAAAAGAAATgtaaagaagtaggtagatgttagttttgaatttggctagccaagtgtgcc Alignment from GeneWise GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG tagatgcttggtaggagatggctccttgcacactcagtgtgttctgccagGCCCCTGTGTCACAGTTTGTTGGTCCCAGTCACCAAAAGAAATgtaaagaagtaggtagatgttagttttgaatttggctagccaagtgtgcc #### Vldlr_ID5807_6 --> 2 - 1 Original Alignment ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg cttcacttctgatgtctctagcagtctctcttggtttttgaatcccacagcaTCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGTATCCAGGCTTGTGTTGATGGGTCTGATGAACTGAACTGTAGAAACagtaaggatccctctgagattgacgggtaatggttcctttcccagaagagt Alignment from CESAR ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg cttcacttctgatgtctctagcagtctctcttggtttttgaatcccacagcaTCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGTATCCAGGCTTGTGTTGATGGGTCTGATGAACTGAACTGTAGAAACagtaaggatccctctgagattgacgggtaatggttcctttcccagaagagt Alignment from Spaln_aa2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctcttggtttttgaatcccacagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGTATCCAGGCTTGTGTTGATGGGTCTGATGAACTGAACTGTAGAAACAgtaaggatccctctgagattgacgggtaatggttcctttcccagaagagt Alignment from Spaln_nt2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctcttggtttttgaatcccacagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGTATCCAGGCTTGTGTTGATGGGTCTGATGAACTGAACTGTAGAAACAgtaaggatccctctgagattgacgggtaatggttcctttcccagaagagt Alignment from Pairagon CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctcttggtttttgaatcccacagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGTATCCAGGCTTGTGTTGATGGGTCTGATGAACTGAACTGTAGAAACAgtaaggatccctctgagattgacgggtaatggttcctttcccagaagagt Alignment from Exonerate_protein2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctcttggtttttgaatcccacagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGTATCCAGGCTTGTGTTGATGGGTCTGATGAACTGAACTGTAGAAACAgtaaggatccctctgagattgacgggtaatggttcctttcccagaagagt Alignment from Exonerate_coding2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctcttggtttttgaatcccacagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGTATCCAGGCTTGTGTTGATGGGTCTGATGAACTGAACTGTAGAAACAgtaaggatccctctgagattgacgggtaatggttcctttcccagaagagt Alignment from GeneWise -------------------------------------------------CCTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG CTTCACTTCTGATGTCTCTAGCAGTCTCTCTTGGTTTTTGAATCCCACAGCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGTATCCAGGCTTGTGTTGATGGGTCTGATGAACTGAACTGTAGAAACAgtaaggatccctctgagattgacgggtaatggttcctttcccagaagagt #### Vldlr_ID5815_14 --> 0 - 1 Original Alignment GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAg aattgatgtgtggaatactgtcatagattttttatgttgtactcttacagGATCGTGTGTACTGGATAGATGGAGAGAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTATCATGAACTTGTCCAGCCATCAggtaggttgggagtaacccatcttgaaccatcactctctaatcatactatg Alignment from CESAR GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAg aattgatgtgtggaatactgtcatagattttttatgttgtactcttacagGATCGTGTGTACTGGATAGATGGAGAGAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTATCATGAACTTGTCCAGCCATCAggtaggttgggagtaacccatcttgaaccatcactctctaatcatactatg Alignment from Spaln_aa2Genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG aattgatgtgtggaatactgtcatagattttttatgttgtactcttacagGATCGTGTGTACTGGATAGATGGAGAGAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTATCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccatcttgaaccatcactctctaatcatactatg Alignment from Spaln_nt2Genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG aattgatgtgtggaatactgtcatagattttttatgttgtactcttacagGATCGTGTGTACTGGATAGATGGAGAGAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTATCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccatcttgaaccatcactctctaatcatactatg Alignment from Pairagon GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG aattgatgtgtggaatactgtcatagattttttatgttgtactcttacagGATCGTGTGTACTGGATAGATGGAGAGAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTATCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccatcttgaaccatcactctctaatcatactatg Alignment from Exonerate_protein2genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG aattgatgtgtggaatactgtcatagattttttatgttgtactcttacagGATCGTGTGTACTGGATAGATGGAGAGAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTATCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccatcttgaaccatcactctctaatcatactatg Alignment from Exonerate_coding2genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG aattgatgtgtggaatactgtcatagattttttatgttgtactcttacagGATCGTGTGTACTGGATAGATGGAGAGAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTATCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccatcttgaaccatcactctctaatcatactatg Alignment from GeneWise GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG aattgatgtgtggaatactgtcatagattttttatgttgtactcttacagGATCGTGTGTACTGGATAGATGGAGAGAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTATCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccatcttgaaccatcactctctaatcatactatg #### Vldlr_ID5818_17 --> 2 - 1 Original Alignment ggATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCt aataaactacgggcactagattgcaacatgacaggtttctctgctcccaggaATCAATGTGACTACAGCAGTATCAGAAGTGAGTGTGCCTCCTAAAGGGACGTCAGCTGCATGGGCCATTCTTCCCCTGtgtaaggtgctacgattatggaaaggcacaacctgagcacctttacagcct Alignment from CESAR ggATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCt aataaactacgggcactagattgcaacatgacaggtttctctgctcccaggaATCAATGTGACTACAGCAGTATCAGAAGTGAGTGTGCCTCCTAAAGGGACGTCAGCTGCATGGGCCATTCTTCCCCTGtgtaaggtgctacgattatggaaaggcacaacctgagcacctttacagcct Alignment from Spaln_aa2Genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT aataaactacgggcactagattgcaacatgacaggtttctctgctcccagGAATCAATGTGACTACAGCAGTATCAGAAGTGAGTGTGCCTCCTAAAGGGACGTCAGCTGCATGGGCCATTCTTCCCCTGTgtaaggtgctacgattatggaaaggcacaacctgagcacctttacagcct Alignment from Spaln_nt2Genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT aataaactacgggcactagattgcaacatgacaggtttctctgctcccagGAATCAATGTGACTACAGCAGTATCAGAAGTGAGTGTGCCTCCTAAAGGGACGTCAGCTGCATGGGCCATTCTTCCCCTGTgtaaggtgctacgattatggaaaggcacaacctgagcacctttacagcct Alignment from Pairagon GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT aataaactacgggcactagattgcaacatgacaggtttctctgctcccagGAATCAATGTGACTACAGCAGTATCAGAAGTGAGTGTGCCTCCTAAAGGGACGTCAGCTGCATGGGCCATTCTTCCCCTGTgtaaggtgctacgattatggaaaggcacaacctgagcacctttacagcct Alignment from Exonerate_protein2genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT aataaactacgggcactagattgcaacatgacaggtttctctgctcccagGAATCAATGTGACTACAGCAGTATCAGAAGTGAGTGTGCCTCCTAAAGGGACGTCAGCTGCATGGGCCATTCTTCCCCTGTgtaaggtgctacgattatggaaaggcacaacctgagcacctttacagcct Alignment from Exonerate_coding2genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT aataaactacgggcactagattgcaacatgacaggtttctctgctcccagGAATCAATGTGACTACAGCAGTATCAGAAGTGAGTGTGCCTCCTAAAGGGACGTCAGCTGCATGGGCCATTCTTCCCCTGTgtaaggtgctacgattatggaaaggcacaacctgagcacctttacagcct Alignment from GeneWise GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT aataaactacgggcactagattgcaacatgacaggtttctctgctcccagGAATCAATGTGACTACAGCAGTATCAGAAGTGAGTGTGCCTCCTAAAGGGACGTCAGCTGCATGGGCCATTCTTCCCCTGTgtaaggtgctacgattatggaaaggcacaacctgagcacctttacagcct #### Vps13a_ID4055_68 --> 1 - 0 Original Alignment aGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG attatcgccagtgtgggtaagtgtctgaaatcaattttgtgatgttttaggGCTACAGAGACATCTGATGTGGAGAGTCTACGTCCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTATGTGATGGTTCTGGAAATCAAATGTTACAGgtgagttaagtataagaagctacaaatccttatggtttttaaaaaacaat Alignment from CESAR aGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG attatcgccagtgtgggtaagtgtctgaaatcaattttgtgatgttttaggGCTACAGAGACATCTGATGTGGAGAGTCTACGTCCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTATGTGATGGTTCTGGAAATCAAATGTTACAGgtgagttaagtataagaagctacaaatccttatggtttttaaaaaacaat Alignment from Spaln_aa2Genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG attatcgccagtgtgggtaagtgtctgaaatcaattttgtgatgttttagGGCTACAGAGACATCTGATGTGGAGAGTCTACGTCCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTATGTGATGGTTCTGGAAATCAAATGTTACAGgtgagttaagtataagaagctacaaatccttatggtttttaaaaaacaat Alignment from Spaln_nt2Genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG attatcgccagtgtgggtaagtgtctgaaatcaattttgtgatgttttagGGCTACAGAGACATCTGATGTGGAGAGTCTACGTCCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTATGTGATGGTTCTGGAAATCAAATGTTACAGgtgagttaagtataagaagctacaaatccttatggtttttaaaaaacaat Alignment from Pairagon AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG attatcgccagtgtgggtaagtgtctgaaatcaattttgtgatgttttagGGCTACAGAGACATCTGATGTGGAGAGTCTACGTCCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTATGTGATGGTTCTGGAAATCAAATGTTACAGgtgagttaagtataagaagctacaaatccttatggtttttaaaaaacaat Alignment from Exonerate_protein2genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG attatcgccagtgtgggtaagtgtctgaaatcaattttgtgatgttttagGGCTACAGAGACATCTGATGTGGAGAGTCTACGTCCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTATGTGATGGTTCTGGAAATCAAATGTTACAGgtgagttaagtataagaagctacaaatccttatggtttttaaaaaacaat Alignment from Exonerate_coding2genome attatcgccagtgtgggtaagtgtctgaaatcaattttgtgatgttttagggctacagagacatctgatgtggagagtctacgtcctcccaagttctttaatgaagatggactcatcagaccttacaggttatgtgatggttctggaaatcaaatgttacaggtgagttaagtataagaagctacaaatccttatggtttttaaaaaacaat Alignment from GeneWise AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG attatcgccagtgtgggtaagtgtctgaaatcaattttgtgatgttttagGGCTACAGAGACATCTGATGTGGAGAGTCTACGTCCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTATGTGATGGTTCTGGAAATCAAATGTTACAGgtgagttaagtataagaagctacaaatccttatggtttttaaaaaacaat #### Vps13a_ID4072_51 --> 0 - 0 Original Alignment AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG tttttactccacagaatatgtggaaaaactgttctgcttctaatttcaagAGTATCCCACTCTGGCCAGAGAATGCCCTGAATTTCCTGCTG---------GAGAGGAGAGAGGATCCACCAAAAAGAATTTATTTCAATAAACAAGATAATTGCAGTCTACTGAGTTTGAATAATGATgtatgagtattatcaattataatcttataattgcacataatttcatcctt Alignment from CESAR AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG tttttactccacagaatatgtggaaaaactgttctgcttctaatttcaagAGTATCCCACTCTGGCCAGAGAATGCCCTGAATTTCCTGCTG---------GAGAGGAGAGAGGATCCACCAAAAAGAATTTATTTCAATAAACAAGATAATTGCAGTCTACTGAGTTTGAATAATGATgtatgagtattatcaattataatcttataattgcacataatttcatcctt Alignment from Spaln_aa2Genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG tttttactccacagaatatgtggaaaaactgttctgcttctaatttcaagAGTATCCCACTCTGGCCAGAGAATGCCCTGAATTTCCTGCTG---------GAGAGGAGAGAGGATCCACCAAAAAGAATTTATTTCAATAAACAAGATAATTGCAGTCTACTGAGTTTGAATAATGATgtatgagtattatcaattataatcttataattgcacataatttcatcctt Alignment from Spaln_nt2Genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG tttttactccacagaatatgtggaaaaactgttctgcttctaatttcaagAGTATCCCACTCTGGCCAGAGAATGCCCTGAATTTCCTGC---------TGGAGAGGAGAGAGGATCCACCAAAAAGAATTTATTTCAATAAACAAGATAATTGCAGTCTACTGAGTTTGAATAATGATgtatgagtattatcaattataatcttataattgcacataatttcatcctt Alignment from Pairagon AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG tttttactccacagaatatgtggaaaaactgttctgcttctaatttcaagAGTATCCCACTCTGGCCAGAGAATGCCCTGAATTTCCTGC---------TGGAGAGGAGAGAGGATCCACCAAAAAGAATTTATTTCAATAAACAAGATAATTGCAGTCTACTGAGTTTGAATAATGATgtatgagtattatcaattataatcttataattgcacataatttcatcctt Alignment from Exonerate_protein2genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG tttttactccacagaatatgtggaaaaactgttctgcttctaatttcaagAGTATCCCACTCTGGCCAGAGAATGCCCTGAATTTCCTGCTG---------GAGAGGAGAGAGGATCCACCAAAAAGAATTTATTTCAATAAACAAGATAATTGCAGTCTACTGAGTTTGAATAATGATgtatgagtattatcaattataatcttataattgcacataatttcatcctt Alignment from Exonerate_coding2genome tttttactccacagaatatgtggaaaaactgttctgcttctaatttcaagagtatcccactctggccagagaatgccctgaatttcctgctggagaggagagaggatccaccaaaaagaatttatttcaataaacaagataattgcagtctactgagtttgaataatgatgtatgagtattatcaattataatcttataattgcacataatttcatcctt Alignment from GeneWise AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG tttttactccacagaatatgtggaaaaactgttctgcttctaatttcaagAGTATCCCACTCTGGCCAGAGAATGCCCTGAATTTCCTGCTG---------GAGAGGAGAGAGGATCCACCAAAAAGAATTTATTTCAATAAACAAGATAATTGCAGTCTACTGAGTTTGAATAATGATgtatgagtattatcaattataatcttataattgcacataatttcatcctt #### Vps13a_ID4079_44 --> 0 - 1 Original Alignment GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCT---------TTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTa aattggattcctccgtccctccattgtttgatggggcttctgtgtttcagACATCTATTGCGGCTGCTACTGGCTCTTTATCTATCTTCCTGAGAGACTTAGCACCATTCATGATTTTCAATCCCTTTGGCCTGACTCTCTCAGTCTCACTGAGTGACTCATTTAGTGTTCATAATGTTGACCTTGCAAACCTTGCAAAAACATATGATCTGAAAAATGACGAGAGCTTAAGTATGGATTATGTGCGCACAAAGCAGAATGACCACTTCAATGCAGTAACAAGCCTAAGCAGCAAGCTGTTTTTCATTCTTCTTtgtgagtaagtggtaatagaaaaaagtcagaattgcttattgtgaggacac Alignment from CESAR GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTT---------CCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTa aattggattcctccgtccctccattgtttgatggggcttctgtgtttcagACATCTATTGCGGCTGCTACTGGCTCTTTATCTATCTTCCTGAGAGACTTAGCACCATTCATGATTTTCAATCCCTTTGGCCTGACTCTCTCAGTCTCACTGAGTGACTCATTTAGTGTTCATAATGTTGACCTTGCAAACCTTGCAAAAACATATGATCTGAAAAATGACGAGAGCTTAAGTATGGATTATGTGCGCACAAAGCAGAATGACCACTTCAATGCAGTAACAAGCCTAAGCAGCAAGCTGTTTTTCATTCTTCTTtgtgagtaagtggtaatagaaaaaagtcagaattgcttattgtgaggacac Alignment from Spaln_aa2Genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTT---------CCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA aattggattcctccgtccctccattgtttgatggggcttctgtgtttcagACATCTATTGCGGCTGCTACTGGCTCTTTATCTATCTTCCTGAGAGACTTAGCACCATTCATGATTTTCAATCCCTTTGGCCTGACTCTCTCAGTCTCACTGAGTGACTCATTTAGTGTTCATAATGTTGACCTTGCAAACCTTGCAAAAACATATGATCTGAAAAATGACGAGAGCTTAAGTATGGATTATGTGCGCACAAAGCAGAATGACCACTTCAATGCAGTAACAAGCCTAAGCAGCAAGCTGTTTTTCATTCTTCTTTgtgagtaagtggtaatagaaaaaagtcagaattgcttattgtgaggacac Alignment from Spaln_nt2Genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTT--CCTT-------TGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA aattggattcctccgtccctccattgtttgatggggcttctgtgtttcagACATCTATTGCGGCTGCTACTGGCTCTTTATCTATCTTCCTGAGAGACTTAGCACCATTCATGATTTTCAATCCCTTTGGCCTGACTCTCTCAGTCTCACTGAGTGACTCATTTAGTGTTCATAATGTTGACCTTGCAAACCTTGCAAAAACATATGATCTGAAAAATGACGAGAGCTTAAGTATGGATTATGTGCGCACAAAGCAGAATGACCACTTCAATGCAGTAACAAGCCTAAGCAGCAAGCTGTTTTTCATTCTTCTTTgtgagtaagtggtaatagaaaaaagtcagaattgcttattgtgaggacac Alignment from Pairagon GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTT-----------CCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA aattggattcctccgtccctccattgtttgatggggcttctgtgtttcagACATCTATTGCGGCTGCTACTGGCTCTTTATCTATCTTCCTGAGAGACTTAGCACCATTCATGATTTTCAATCCCTTTGGCCTGACTCTCTCAGTCTCACTGAGTGACTCATTTAGTGTTCATAATGTTGACCTTGCAAACCTT--GCAAAAACATATGATCTGAAAAATGACGAGAGCTTAAGTATGGATTATGTGCGCACAAAGCAGAATGACCACTTCAATGCAGTAACAAGCCTAAGCAGCAAGCTGTTTTTCATTCTTCTTTgtgagtaagtggtaatagaaaaaagtcagaattgcttattgtgaggacac Alignment from Exonerate_protein2genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCT---------TTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA aattggattcctccgtccctccattgtttgatggggcttctgtgtttcagACATCTATTGCGGCTGCTACTGGCTCTTTATCTATCTTCCTGAGAGACTTAGCACCATTCATGATTTTCAATCCCTTTGGCCTGACTCTCTCAGTCTCACTGAGTGACTCATTTAGTGTTCATAATGTTGACCTTGCAAACCTTGCAAAAACATATGATCTGAAAAATGACGAGAGCTTAAGTATGGATTATGTGCGCACAAAGCAGAATGACCACTTCAATGCAGTAACAAGCCTAAGCAGCAAGCTGTTTTTCATTCTTCTTTgtgagtaagtggtaatagaaaaaagtcagaattgcttattgtgaggacac Alignment from Exonerate_coding2genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCT---------TTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA aattggattcctccgtccctccattgtttgatggggcttctgtgtttcagACATCTATTGCGGCTGCTACTGGCTCTTTATCTATCTTCCTGAGAGACTTAGCACCATTCATGATTTTCAATCCCTTTGGCCTGACTCTCTCAGTCTCACTGAGTGACTCATTTAGTGTTCATAATGTTGACCTTGCAAACCTTGCAAAAACATATGATCTGAAAAATGACGAGAGCTTAAGTATGGATTATGTGCGCACAAAGCAGAATGACCACTTCAATGCAGTAACAAGCCTAAGCAGCAAGCTGTTTTTCATTCTTCTTTgtgagtaagtggtaatagaaaaaagtcagaattgcttattgtgaggacac Alignment from GeneWise GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCT---------TTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA aattggattcctccgtccctccattgtttgatggggcttctgtgtttcagACATCTATTGCGGCTGCTACTGGCTCTTTATCTATCTTCCTGAGAGACTTAGCACCATTCATGATTTTCAATCCCTTTGGCCTGACTCTCTCAGTCTCACTGAGTGACTCATTTAGTGTTCATAATGTTGACCTTGCAAACCTTGCAAAAACATATGATCTGAAAAATGACGAGAGCTTAAGTATGGATTATGTGCGCACAAAGCAGAATGACCACTTCAATGCAGTAACAAGCCTAAGCAGCAAGCTGTTTTTCATTCTTCTTTgtgagtaagtggtaatagaaaaaagtcagaattgcttattgtgaggacac #### Vps13a_ID4082_41 --> 0 - 0 Original Alignment GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA aagtgtatgattataatgatcgaaaaaacttttattactgtgcttttcagGTTTCGCCGGTTATCATGAATTCCATGATAACAATCACATCAGCACTGTATTCAACTAAGGAGTCTGTGCCAGAAGAGAACACTTCC------ACACATTCATGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTCCTTGATGAATCTAATGAAAGTGAAAAGGTAGTTCCCACT---GAAGTGACG---CGTGGGGAAAGTTTGAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACGGTACCAATGCTGTTGGCAAGGGCATGCTTCTCTGGAGAGAGTAAGAATTGGTTGTTCCTAATCAACCTGCACTGCCATGTTAAATTAGAAgtgaagggttgaccacttaaatgattacctaatgacaaactgtcttattt Alignment from CESAR GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA aagtgtatgattataatgatcgaaaaaacttttattactgtgcttttcagGTTTCGCCGGTTATCATGAATTCCATGATAACAATCACATCAGCACTGTATTCAACTAAGGAGTCTGTGCCAGAAGAGAACACTTCC------ACACATTCATGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTCCTTGATGAATCTAATGAAAGTGAAAAGGTAGTTCCCACT---GAAGTGACGCGT---GGGGAAAGTTTGAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACGGTACCAATGCTGTTGGCAAGGGCATGCTTCTCTGGAGAGAGTAAGAATTGGTTGTTCCTAATCAACCTGCACTGCCATGTTAAATTAGAAgtgaagggttgaccacttaaatgattacctaatgacaaactgtcttattt Alignment from Spaln_aa2Genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA aagtgtatgattataatgatcgaaaaaacttttattactgtgcttttcagGTTTCGCCGGTTATCATGAATTCCATGATAACAATCACATCAGCACTGTATTCAACTAAGGAGTCTGTGCCAGAAGAGAACACTTCC------ACACATTCATGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTCCTTGATGAATCTAATGAAAGTGAAAAGGTAGTTCCCACTGAA------GTGACGCGTGGGGAAAGTTTGAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACGGTACCAATGCTGTTGGCAAGGGCATGCTTCTCTGGAGAGAGTAAGAATTGGTTGTTCCTAATCAACCTGCACTGCCATGTTAAATTAGAAgtgaagggttgaccacttaaatgattacctaatgacaaactgtcttattt Alignment from Spaln_nt2Genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA aagtgtatgattataatgatcgaaaaaacttttattactgtgcttttcagGTTTCGCCGGTTATCATGAATTCCATGATAACAATCACATCAGCACTGTATTCAACTAAGGAGTCTGTGCCAGAAGAGAACACTTCCA------CACATTCATGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTCCTTGATGAATCTAATGAAAGTGAAAAGGTAGTTCCCAC---TGAAGTGA---CGCGTGGGGAAAGTTTGAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACGGTACCAATGCTGTTGGCAAGGGCATGCTTCTCTGGAGAGAGTAAGAATTGGTTGTTCCTAATCAACCTGCACTGCCATGTTAAATTAGAAgtgaagggttgaccacttaaatgattacctaatgacaaactgtcttattt Alignment from Pairagon GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA aagtgtatgattataatgatcgaaaaaacttttattactgtgcttttcagGTTTCGCCGGTTATCATGAATTCCATGATAACAATCACATCAGCACTGTATTCAACTAAGGAGTCTGTGCCAGAAGAGAACACTTCCA------CACATTCATGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTCCTTGATGAATCTAATGAAAGTGAAAAGGTAGTTCCCAC---TGAAGTGACGC---GTGGGGAAAGTTTGAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACGGTACCAATGCTGTTGGCAAGGGCATGCTTCTCTGGAGAGAGTAAGAATTGGTTGTTCCTAATCAACCTGCACTGCCATGTTAAATTAGAAgtgaagggttgaccacttaaatgattacctaatgacaaactgtcttattt Alignment from Exonerate_protein2genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA aagtgtatgattataatgatcgaaaaaacttttattactgtgcttttcagGTTTCGCCGGTTATCATGAATTCCATGATAACAATCACATCAGCACTGTATTCAACTAAGGAGTCTGTGCCAGAAGAGAACACTTCC------ACACATTCATGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTCCTTGATGAATCTAATGAAAGTGAAAAGGTAGTTCCCACTGAA------GTGACGCGTGGGGAAAGTTTGAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACGGTACCAATGCTGTTGGCAAGGGCATGCTTCTCTGGAGAGAGTAAGAATTGGTTGTTCCTAATCAACCTGCACTGCCATGTTAAATTAGAAgtgaagggttgaccacttaaatgattacctaatgacaaactgtcttattt Alignment from Exonerate_coding2genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA aagtgtatgattataatgatcgaaaaaacttttattactgtgcttttcagGTTTCGCCGGTTATCATGAATTCCATGATAACAATCACATCAGCACTGTATTCAACTAAGGAGTCTGTGCCAGAAGAGAACACTTCC------ACACATTCATGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTCCTTGATGAATCTAATGAAAGTGAAAAGGTAGTTCCCACTGAA------GTGACGCGTGGGGAAAGTTTGAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACGGTACCAATGCTGTTGGCAAGGGCATGCTTCTCTGGAGAGAGTAAGAATTGGTTGTTCCTAATCAACCTGCACTGCCATGTTAAATTAGAAgtgaagggttgaccacttaaatgattacctaatgacaaactgtcttattt Alignment from GeneWise GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA aagtgtatgattataatgatcgaaaaaacttttattactgtgcttttcagGTTTCGCCGGTTATCATGAATTCCATGATAACAATCACATCAGCACTGTATTCAACTAAGGAGTCTGTGCCAGAAGAGAACACTTCC------ACACATTCATGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTCCTTGATGAATCTAATGAAAGTGAAAAGGTAGTTCCCACTGAA------GTGACGCGTGGGGAAAGTTTGAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACGGTACCAATGCTGTTGGCAAGGGCATGCTTCTCTGGAGAGAGTAAGAATTGGTTGTTCCTAATCAACCTGCACTGCCATGTTAAATTAGAAgtgaagggttgaccacttaaatgattacctaatgacaaactgtcttattt #### Vps13a_ID4096_27 --> 2 - 0 Original Alignment atGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tatgagacaataataaacccaccaagaatgaccctactctgcctctgcagatGAAAACAAAAAGCCAGTCTACTTAATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggtgctgtattactttggttgtcatacagatttctaaattccaa Alignment from CESAR atGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tatgagacaataataaacccaccaagaatgaccctactctgcctctgcagatGAAAACAAAAAGCCAGTCTACTTAATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggtgctgtattactttggttgtcatacagatttctaaattccaa Alignment from Spaln_aa2Genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tatgagacaataataaacccaccaagaatgaccctactctgcctctgcagATGAAAACAAAAAGCCAGTCTACTTAATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggtgctgtattactttggttgtcatacagatttctaaattccaa Alignment from Spaln_nt2Genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tatgagacaataataaacccaccaagaatgaccctactctgcctctgcagATGAAAACAAAAAGCCAGTCTACTTAATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggtgctgtattactttggttgtcatacagatttctaaattccaa Alignment from Pairagon ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tatgagacaataataaacccaccaagaatgaccctactctgcctctgcagATGAAAACAAAAAGCCAGTCTACTTAATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggtgctgtattactttggttgtcatacagatttctaaattccaa Alignment from Exonerate_protein2genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tatgagacaataataaacccaccaagaatgaccctactctgcctctgcagATGAAAACAAAAAGCCAGTCTACTTAATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggtgctgtattactttggttgtcatacagatttctaaattccaa Alignment from Exonerate_coding2genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tatgagacaataataaacccaccaagaatgaccctactctgcctctgcagATGAAAACAAAAAGCCAGTCTACTTAATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggtgctgtattactttggttgtcatacagatttctaaattccaa Alignment from GeneWise ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tatgagacaataataaacccaccaagaatgaccctactctgcctctgcagATGAAAACAAAAAGCCAGTCTACTTAATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggtgctgtattactttggttgtcatacagatttctaaattccaa #### Vps13a_ID4100_23 --> 1 - 0 Original Alignment aTTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG agtcagtacatgaaataaatctacttagcagtattgtctttatatttcagaCACAAGATTTCTGGC------CCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTATTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtcagttggttgctatcctgcttactgcatgtgttagtttgtatca Alignment from CESAR aTTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG agtcagtacatgaaataaatctacttagcagtattgtctttatatttcagaCACAAGATTTCTGGC------CCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTATTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtcagttggttgctatcctgcttactgcatgtgttagtttgtatca Alignment from Spaln_aa2Genome ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG agtcagtacatgaaataaatctacttagcagtattgtctttatatttcagACACAAGATTTCTGGC------CCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTATTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtcagttggttgctatcctgcttactgcatgtgttagtttgtatca Alignment from Spaln_nt2Genome ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG agtcagtacatgaaataaatctacttagcagtattgtctttatatttcagACACAAGATTTCTGG------CCCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTATTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtcagttggttgctatcctgcttactgcatgtgttagtttgtatca Alignment from Pairagon ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG agtcagtacatgaaataaatctacttagcagtattgtctttatatttcagACACAAGATTTCTGG------CCCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTATTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtcagttggttgctatcctgcttactgcatgtgttagtttgtatca Alignment from Exonerate_protein2genome GATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG agtcagtacatgaaataaatctacttagcagtattgtctttatatttcagACACAAGATTTCTGGCCCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTATTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtcagttggttgctatcctgcttactgcatgtgttagtttgtatca Alignment from Exonerate_coding2genome GATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG agtcagtacatgaaataaatctacttagcagtattgtctttatatttcagACACAAGATTTCTGGCCCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTATTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtcagttggttgctatcctgcttactgcatgtgttagtttgtatca Alignment from GeneWise ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAGATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTA- agtcagtacatgaaataaatctacttagcagtattgtctttatatttcagACACAAGATTTCTGGC------CCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTATTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAGTG------AGTCAGTTGGTTGCTATCCTGCTTACTGCATGTGTTAgttt #### Vps13a_ID4111_12 --> 0 - 2 Original Alignment TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg caaatcctcctgtagagtacgtacaaatttatccaaaatcttttttgaagTACTTCAGCCTTATGAAGCTCCTTAAGTCAATTGATATGATGACACAGAACCAGCCATACCGGAAATTTGAGCCCAGTGTCCGTCTTCACCTGCAGGCCAAAGAGtggtgtgtatccactgccccacagacctagttaaaggaatcttagtgcatgg Alignment from CESAR TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg caaatcctcctgtagagtacgtacaaatttatccaaaatcttttttgaagTACTTCAGCCTTATGAAGCTCCTTAAGTCAATTGATATGATGACACAGAACCAGCCATACCGGAAATTTGAGCCCAGTGTCCGTCTTCACCTGCAGGCCAAAGAGtggtgtgtatccactgccccacagacctagttaaaggaatcttagtgcatgg Alignment from Spaln_aa2Genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcctgtagagtacgtacaaatttatccaaaatcttttttgaagTACTTCAGCCTTATGAAGCTCCTTAAGTCAATTGATATGATGACACAGAACCAGCCATACCGGAAATTTGAGCCCAGTGTCCGTCTTCACCTGCAGGCCAAAGAGTGgtgtgtatccactgccccacagacctagttaaaggaatcttagtgcatgg Alignment from Spaln_nt2Genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcctgtagagtacgtacaaatttatccaaaatcttttttgaagTACTTCAGCCTTATGAAGCTCCTTAAGTCAATTGATATGATGACACAGAACCAGCCATACCGGAAATTTGAGCCCAGTGTCCGTCTTCACCTGCAGGCCAAAGAGTGgtgtgtatccactgccccacagacctagttaaaggaatcttagtgcatgg Alignment from Pairagon TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcctgtagagtacgtacaaatttatccaaaatcttttttgaagTACTTCAGCCTTATGAAGCTCCTTAAGTCAATTGATATGATGACACAGAACCAGCCATACCGGAAATTTGAGCCCAGTGTCCGTCTTCACCTGCAGGCCAAAGAGTGgtgtgtatccactgccccacagacctagttaaaggaatcttagtgcatgg Alignment from Exonerate_protein2genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcctgtagagtacgtacaaatttatccaaaatcttttttgaagTACTTCAGCCTTATGAAGCTCCTTAAGTCAATTGATATGATGACACAGAACCAGCCATACCGGAAATTTGAGCCCAGTGTCCGTCTTCACCTGCAGGCCAAAGAGTGgtgtgtatccactgccccacagacctagttaaaggaatcttagtgcatgg Alignment from Exonerate_coding2genome caaatcctcctgtagagtacgtacaaatttatccaaaatcttttttgaagtacttcagccttatgaagctccttaagtcaattgatatgatgacacagaaccagccataccggaaatttgagcccagtgtccgtcttcacctgcaggccaaagagtggtgtgtatccactgccccacagacctagttaaaggaatcttagtgcatgg Alignment from GeneWise TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcctgtagagtacgtacaaatttatccaaaatcttttttgaagTACTTCAGCCTTATGAAGCTCCTTAAGTCAATTGATATGATGACACAGAACCAGCCATACCGGAAATTTGAGCCCAGTGTCCGTCTTCACCTGCAGGCCAAAGAGTGgtgtgtatccactgccccacagacctagttaaaggaatcttagtgcatgg #### Vps37c_ID2983_3 --> 2 - 0 Original Alignment agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG caattgaaggattttgctgtcagatttagtacaataattctgtgttgcagagAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGGAGATTGAGGAGGACTCAGAGgtaacccaagcattgctccttgatttggcttattccaaattggactgctg Alignment from CESAR agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG caattgaaggattttgctgtcagatttagtacaataattctgtgttgcagagAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGGAGATTGAGGAGGACTCAGAGgtaacccaagcattgctccttgatttggcttattccaaattggactgctg Alignment from Spaln_aa2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG caattgaaggattttgctgtcagatttagtacaataattctgtgttgcagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGGAGATTGAGGAGGACTCAGAGgtaacccaagcattgctccttgatttggcttattccaaattggactgctg Alignment from Spaln_nt2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG caattgaaggattttgctgtcagatttagtacaataattctgtgttgcagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGGAGATTGAGGAGGACTCAGAGgtaacccaagcattgctccttgatttggcttattccaaattggactgctg Alignment from Pairagon AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG caattgaaggattttgctgtcagatttagtacaataattctgtgttgcagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGGAGATTGAGGAGGACTCAGAGgtaacccaagcattgctccttgatttggcttattccaaattggactgctg Alignment from Exonerate_protein2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG caattgaaggattttgctgtcagatttagtacaataattctgtgttgcagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGGAGATTGAGGAGGACTCAGAGgtaacccaagcattgctccttgatttggcttattccaaattggactgctg Alignment from Exonerate_coding2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG caattgaaggattttgctgtcagatttagtacaataattctgtgttgcagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGGAGATTGAGGAGGACTCAGAGgtaacccaagcattgctccttgatttggcttattccaaattggactgctg Alignment from GeneWise AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG caattgaaggattttgctgtcagatttagtacaataattctgtgttgcagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGGAGATTGAGGAGGACTCAGAGgtaacccaagcattgctccttgatttggcttattccaaattggactgctg #### Vwa2_ID12232_5 --> 1 - 2 Original Alignment aGGTGGG---CGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCag ctagaaagaccaaactctgattttagcctggtgttgctctctgcaaacagaGCTGGGGACAGCACAAAAACAGGTTTAGCCCTGAAACACCTGAGTAGAGGTTTCCCTGGTGGTAGAAATGACTTTGTCCCCAAAATCCTTATCCTTTTCACAGATAGTAGGGCCCAGGGGCCTGTAACACTCCCAACTAAACAGCTAAGGGAGAGGGGTATTGTTGTGTTTACTATAGGAGTTCACTTCCCCaagtaagtggataggacagctaatccttgagggatcaatgcatactgatatt Alignment from CESAR aGGTGGG---CGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCag ctagaaagaccaaactctgattttagcctggtgttgctctctgcaaacagaGCTGGGGACAGCACAAAAACAGGTTTAGCCCTGAAACACCTGAGTAGAGGTTTCCCTGGTGGTAGAAATGACTTTGTCCCCAAAATCCTTATCCTTTTCACAGATAGTAGGGCCCAGGGGCCTGTAACACTCCCAACTAAACAGCTAAGGGAGAGGGGTATTGTTGTGTTTACTATAGGAGTTCACTTCCCCaagtaagtggataggacagctaatccttgagggatcaatgcatactgatatt Alignment from Spaln_aa2Genome AGGTGGG---CGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ctagaaagaccaaactctgattttagcctggtgttgctctctgcaaacagAGCTGGGGACAGCACAAAAACAGGTTTAGCCCTGAAACACCTGAGTAGAGGTTTCCCTGGTGGTAGAAATGACTTTGTCCCCAAAATCCTTATCCTTTTCACAGATAGTAGGGCCCAGGGGCCTGTAACACTCCCAACTAAACAGCTAAGGGAGAGGGGTATTGTTGTGTTTACTATAGGAGTTCACTTCCCCAAgtaagtggataggacagctaatccttgagggatcaatgcatactgatatt Alignment from Spaln_nt2Genome AGGTGGGC---GCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ctagaaagaccaaactctgattttagcctggtgttgctctctgcaaacagAGCTGGGGACAGCACAAAAACAGGTTTAGCCCTGAAACACCTGAGTAGAGGTTTCCCTGGTGGTAGAAATGACTTTGTCCCCAAAATCCTTATCCTTTTCACAGATAGTAGGGCCCAGGGGCCTGTAACACTCCCAACTAAACAGCTAAGGGAGAGGGGTATTGTTGTGTTTACTATAGGAGTTCACTTCCCCAAgtaagtggataggacagctaatccttgagggatcaatgcatactgatatt Alignment from Pairagon AGGTGGGC---GCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ctagaaagaccaaactctgattttagcctggtgttgctctctgcaaacagAGCTGGGGACAGCACAAAAACAGGTTTAGCCCTGAAACACCTGAGTAGAGGTTTCCCTGGTGGTAGAAATGACTTTGTCCCCAAAATCCTTATCCTTTTCACAGATAGTAGGGCCCAGGGGCCTGTAACACTCCCAACTAAACAGCTAAGGGAGAGGGGTATTGTTGTGTTTACTATAGGAGTTCACTTCCCCAAgtaagtggataggacagctaatccttgagggatcaatgcatactgatatt Alignment from Exonerate_protein2genome AGGTGGG---CGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ctagaaagaccaaactctgattttagcctggtgttgctctctgcaaacagAGCTGGGGACAGCACAAAAACAGGTTTAGCCCTGAAACACCTGAGTAGAGGTTTCCCTGGTGGTAGAAATGACTTTGTCCCCAAAATCCTTATCCTTTTCACAGATAGTAGGGCCCAGGGGCCTGTAACACTCCCAACTAAACAGCTAAGGGAGAGGGGTATTGTTGTGTTTACTATAGGAGTTCACTTCCCCAAgtaagtggataggacagctaatccttgagggatcaatgcatactgatatt Alignment from Exonerate_coding2genome AGGTGGG---CGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ctagaaagaccaaactctgattttagcctggtgttgctctctgcaaacagAGCTGGGGACAGCACAAAAACAGGTTTAGCCCTGAAACACCTGAGTAGAGGTTTCCCTGGTGGTAGAAATGACTTTGTCCCCAAAATCCTTATCCTTTTCACAGATAGTAGGGCCCAGGGGCCTGTAACACTCCCAACTAAACAGCTAAGGGAGAGGGGTATTGTTGTGTTTACTATAGGAGTTCACTTCCCCAAgtaagtggataggacagctaatccttgagggatcaatgcatactgatatt Alignment from GeneWise -AAAGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ctagaaagaccaaactctgattttagcctggtgttgctctctgcaaacagAGCTGGGGACAGCACAAAAACAGGTTTAGCCCTGAAACACCTGAGTAGAGGTTTCCCTGGTGGTAGAAATGACTTTGTCCCCAAAATCCTTATCCTTTTCACAGATAGTAGGGCCCAGGGGCCTGTAACACTCCCAACTAAACAGCTAAGGGAGAGGGGTATTGTTGTGTTTACTATAGGAGTTCACTTCCCCAAgtaagtggataggacagctaatccttgagggatcaatgcatactgatatt #### Vwa2_ID12235_8 --> 1 - 1 Original Alignment cTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAg agcttggactcccaatgaaattccatctacccgcttgtcttgttctgcagcAGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGGACCATCTGTCCCagtaaggcccctagctagtgcaagagaggaggtctggccaggatcttatct Alignment from CESAR cTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAg agcttggactcccaatgaaattccatctacccgcttgtcttgttctgcagcAGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGGACCATCTGTCCCagtaaggcccctagctagtgcaagagaggaggtctggccaggatcttatct Alignment from Spaln_aa2Genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG agcttggactcccaatgaaattccatctacccgcttgtcttgttctgcagCAGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGGACCATCTGTCCCAgtaaggcccctagctagtgcaagagaggaggtctggccaggatcttatct Alignment from Spaln_nt2Genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG agcttggactcccaatgaaattccatctacccgcttgtcttgttctgcagCAGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGGACCATCTGTCCCAgtaaggcccctagctagtgcaagagaggaggtctggccaggatcttatct Alignment from Pairagon CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG agcttggactcccaatgaaattccatctacccgcttgtcttgttctgcagCAGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGGACCATCTGTCCCAgtaaggcccctagctagtgcaagagaggaggtctggccaggatcttatct Alignment from Exonerate_protein2genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG agcttggactcccaatgaaattccatctacccgcttgtcttgttctgcagCAGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGGACCATCTGTCCCAgtaaggcccctagctagtgcaagagaggaggtctggccaggatcttatct Alignment from Exonerate_coding2genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG agcttggactcccaatgaaattccatctacccgcttgtcttgttctgcagCAGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGGACCATCTGTCCCAgtaaggcccctagctagtgcaagagaggaggtctggccaggatcttatct Alignment from GeneWise CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG agcttggactcccaatgaaattccatctacccgcttgtcttgttctgcagCAGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGGACCATCTGTCCCAgtaaggcccctagctagtgcaagagaggaggtctggccaggatcttatct #### Vwa2_ID12238_11 --> 2 - 1 Original Alignment gcTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCC---------ACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATG---ACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCATC---GAGTGGCTATGTAGAg ctttgattagtgagagtgatgtaggtagaactcacttctcacctgcgtaggtTGTCAGGCACAATCATTGGAACTCCTATTCCTATTGGATGCGTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACTTGCACTCTTCGGTTTGATGTAAATCCTGGTGTGACTCATGTT------GTGGTATATGGTCGC---------CCAGCATTTGGCCAAGACATGCATCCTACATGGGCTACATGGGCTGCTGTAGTAAGAACCATGAGCCAGAGCCAAGCTCCATATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATGTTGAGGACACAGTGATGATGATGGATCAGAGGGGCACCCACTCAGGCGTGCCCAATGCAGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCGGCAATACCTGCACAGAAGTTACGAGGAAATGGCATTTCGGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCTGGCTACATAGACCTACCTTACTACTGTGACATGCTGACTGTGGAATGGCTGTGTCGAggtgagttaacacagatgatattggcaatatgtttccctggtttaacaggg Alignment from CESAR gcTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCT---------GCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTC---CAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAg ctttgattagtgagagtgatgtaggtagaactcacttctcacctgcgtaggtTGTCAGGCACAATCATTGGAACTCCTATTCCTATTGGATGCGTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACTTGCACTCTTCGGTTTGATGTAAATCCTGGTGTGACTCATGTT------GTGGTATATGGT---------CGCCCAGCATTTGGCCAAGACATGCATCCTACATGGGCTACATGGGCTGCTGTAGTAAGAACCATGAGCCAGAGCCAAGCTCCATATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATGTTGAGGACACAGTGATGATGATGGATCAGAGGGGCACCCACTCAGGCGTGCCCAATGCAGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCGGCAATACCTGCACAGAAGTTACGAGGAAATGGCATTTCGGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCTGGCTACATAGACCTACCTTACTACTGTGACATGCTGACTGTGGAATGGCTGTGTCGAggtgagttaacacagatgatattggcaatatgtttccctggtttaacaggg Alignment from Spaln_aa2Genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTC---CAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattagtgagagtgatgtaggtagaactcacttctcacctgcgtagGTTGTCAGGCACAATCATTGGAACTCCTATTCCTATTGGATGCGTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACTTGCACTCTTCGGTTTGATGTAAATCCTGGTGTGACTCATGTTGTGGTATATGGTCGCCCAGCATTTGGCCAAGACATGCATCCTACATGGGCTACATGGGCTGCTGTAGTAAGAACCATGAGCCAGAGCCAAGCTCCATATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATGTTGAGGACACAGTGATGATGATGGATCAGAGGGGCACCCACTCAGGCGTGCCCAATGCAGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCGGCAATACCTGCACAGAAGTTACGAGGAAATGGCATTTCGGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCTGGCTACATAGACCTACCTTACTACTGTGACATGCTGACTGTGGAATGGCTGTGTCGAGgtgagttaacacagatgatattggcaatatgtttccctggtttaacaggg Alignment from Spaln_nt2Genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCT---------GCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTC---CAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTA----TGAGCG--TGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCA---TCGAGTGGCTATGTAGAG ctttgattagtgagagtgatgtaggtagaactcacttctcacctgcgtagGTTGTCAGGCACAATCATTGGAACTCCTATTCCTATTGGATGCGTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACTTGCACTCTTCGGTTTGATGTAAATCCTGGTGTGACTCATGTT------GTGGTATATGGTCGCC---------CAGCATTTGGCCAAGACATGCATCCTACATGGGCTACATGGGCTGCTGTAGTAAGAACCATGAGCCAGAGCCAAGCTCCATATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATGTTGAGGACACAGTGATGATGATGGATCAGAGGGGCACCCACTCAGGCGTGCCCAATGCAGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCGGCAATACCTGCACAGAAGTTACGAGGAAATGGCATTTCGGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGAT---TGTCGCTGGCTACATAGACCTACCTTACTACTGTGACATGCTGACTGTGGAATGGCTGTGTCGAGgtgagttaacacagatgatattggcaatatgtttccctggtttaacaggg Alignment from Pairagon GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCT----------------------------GCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGT---CCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCG------TGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCA---TCGAGTGGCTATGTAGAG ctttgattagtgagagtgatgtaggtagaactcacttctcacctgcgtagGTTGTCAGGCACAATCATTGGAACTCCTATTCCTATTGGATGCGTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACTTGCACTCTTCGGTTTGATGTAAATCCTGGTGTGACTCATGTT------GTGGTATATGGTCGCC---------CAGCATTTGGCCAAGACATGCATCCTACATGGGCTACATGGGCTGCTGTAGTAAGAACCATGAGCCA-------------GAGCCAAGCTCCATATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATGTTGAGGACACAGTGATGATGATGGATCAGAGGGGCACCCACTCAGGCGTGCCCAATGCAGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCGGCAATACCTGCACAGAAGTTACGAGGAAATGGCATTTCGGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGAT---TGTCGCTGGCTACATAGACCTACCTTACTACTGTGACATGCTGACTGTGGAATGGCTGTGTCGAGgtgagttaacacagatgatattggcaatatgtttccctggtttaacaggg Alignment from Exonerate_protein2genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTC---CAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattagtgagagtgatgtaggtagaactcacttctcacctgcgtagGTTGTCAGGCACAATCATTGGAACTCCTATTCCTATTGGATGCGTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACTTGCACTCTTCGGTTTGATGTAAATCCTGGTGTGACTCATGTT------GTGGTATATGGTCGCCCAGCATTTGGCCAAGACATGCATCCTACATGGGCTACATGGGCTGCTGTAGTAAGAACCATGAGCCAGAGCCAAGCTCCATATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATGTTGAGGACACAGTGATGATGATGGATCAGAGGGGCACCCACTCAGGCGTGCCCAATGCAGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCGGCAATACCTGCACAGAAGTTACGAGGAAATGGCATTTCGGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCTGGCTACATAGACCTACCTTACTACTGTGACATGCTGACTGTGGAATGGCTGTGTCGAGgtgagttaacacagatgatattggcaatatgtttccctggtttaacaggg Alignment from Exonerate_coding2genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTC---CAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattagtgagagtgatgtaggtagaactcacttctcacctgcgtagGTTGTCAGGCACAATCATTGGAACTCCTATTCCTATTGGATGCGTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACTTGCACTCTTCGGTTTGATGTAAATCCTGGTGTGACTCATGTT------GTGGTATATGGTCGCCCAGCATTTGGCCAAGACATGCATCCTACATGGGCTACATGGGCTGCTGTAGTAAGAACCATGAGCCAGAGCCAAGCTCCATATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATGTTGAGGACACAGTGATGATGATGGATCAGAGGGGCACCCACTCAGGCGTGCCCAATGCAGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCGGCAATACCTGCACAGAAGTTACGAGGAAATGGCATTTCGGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCTGGCTACATAGACCTACCTTACTACTGTGACATGCTGACTGTGGAATGGCTGTGTCGAGgtgagttaacacagatgatattggcaatatgtttccctggtttaacaggg Alignment from GeneWise GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGG---------GCTGCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTC---CAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattagtgagagtgatgtaggtagaactcacttctcacctgcgtagGTTGTCAGGCACAATCATTGGAACTCCTATTCCTATTGGATGCGTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACTTGCACTCTTCGGTTTGATGTAAATCCTGGTGTGACTCATGTT------GTGGTATATGGT---------CGCCCAGCATTTGGCCAAGACATGCATCCTACATGGGCTACATGGGCTGCTGTAGTAAGAACCATGAGCCAGAGCCAAGCTCCATATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATGTTGAGGACACAGTGATGATGATGGATCAGAGGGGCACCCACTCAGGCGTGCCCAATGCAGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCGGCAATACCTGCACAGAAGTTACGAGGAAATGGCATTTCGGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCTGGCTACATAGACCTACCTTACTACTGTGACATGCTGACTGTGGAATGGCTGTGTCGAGgtgagttaacacagatgatattggcaatatgtttccctggtttaacaggg #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg atgcccatcgatatctgtaaccagacatctcttccccgttgtttccccagccCTGTGCTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGTGCTACGTGCCCAggtcagtggtgtgaaataaggaggtctgcataaaaagttcttgttctggga Alignment from CESAR ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg atgcccatcgatatctgtaaccagacatctcttccccgttgtttccccagccCTGTGCTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGTGCTACGTGCCCAggtcagtggtgtgaaataaggaggtctgcataaaaagttcttgttctggga Alignment from Spaln_aa2Genome CTGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG cccatcgatatctgtaaccagacatctcttccccgttgtttcccca gCCCTGTGCTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGTGCTACGTGCCCAGgtcagtggtgtgaaataaggaggtctgcataaaaagttcttgttctggga Alignment from Spaln_nt2Genome TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG atgcccatcgatatctgtaaccagacatctcttccccgttgtttccccag---CCCTGTGCTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGTGCTACGTGCCCAGgtcagtggtgtgaaataaggaggtctgcataaaaagttcttgttctggga Alignment from Pairagon --------------------------------------------CCCTGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG ATGCCCATCGATATCTGTAACCAGACATCTCTTCCCCGTTGTTTCCCCAGCCCTGTGCTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGTGCTACGTGCCCAGgtcagtggtgtgaaataaggaggtctgcataaaaagttcttgttctggga Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG atgcccatcgatatctgtaaccagacatctcttccccgttgtttccccagCCCTGTGCTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGTGCTACGTGCCCAGgtcagtggtgtgaaataaggaggtctgcataaaaagttcttgttctggga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG atgcccatcgatatctgtaaccagacatctcttccccgttgtttccccagCC---CTGTGCTCCTTTGGCTGTGGCAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGTGCTACGTGCCCAGgtcagtggtgtgaaataaggaggtctgcataaaaagttcttgttctggga #### Vwce_ID2951_6 --> 2 - 1 Original Alignment acACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAg tctttgatgcttgaggcaggttcaccatcctgcttctgctgcctccatagacTCTGATGAGTGTCTAGGAACACCCTGCCAGCAGAGATGTAAGAACTGTATTGGTAGCTACAAATGTTCTTGTTGTGCAGGCTTCCATTGCCACAGCAACCGACACTCCTGTATAggtgcgtcaaagaaaggggcagaagagaatacaaaggggaacaagagaaat Alignment from CESAR acACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAg tctttgatgcttgaggcaggttcaccatcctgcttctgctgcctccatagacTCTGATGAGTGTCTAGGAACACCCTGCCAGCAGAGATGTAAGAACTGTATTGGTAGCTACAAATGTTCTTGTTGTGCAGGCTTCCATTGCCACAGCAACCGACACTCCTGTATAggtgcgtcaaagaaaggggcagaagagaatacaaaggggaacaagagaaat Alignment from Spaln_aa2Genome ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tctttgatgcttgaggcaggttcaccatcctgcttctgctgcctccatagACTCTGATGAGTGTCTAGGAACACCCTGCCAGCAGAGATGTAAGAACTGTATTGGTAGCTACAAATGTTCTTGTTGTGCAGGCTTCCATTGCCACAGCAACCGACACTCCTGTATAGgtgcgtcaaagaaaggggcagaagagaatacaaaggggaacaagagaaat Alignment from Spaln_nt2Genome -CACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tctttgatgcttgaggcaggttcaccatcctgcttctgctgcctccatagACTCTGATGAGTGTCTAGGAACACCCTGCCAGCAGAGATGTAAGAACTGTATTGGTAGCTACAAATGTTCTTGTTGTGCAGGCTTCCATTGCCACAGCAACCGACACTCCTGTATAGgtgcgtcaaagaaaggggcagaagagaatacaaaggggaacaagagaaat Alignment from Pairagon ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tctttgatgcttgaggcaggttcaccatcctgcttctgctgcctccatagACTCTGATGAGTGTCTAGGAACACCCTGCCAGCAGAGATGTAAGAACTGTATTGGTAGCTACAAATGTTCTTGTTGTGCAGGCTTCCATTGCCACAGCAACCGACACTCCTGTATAGgtgcgtcaaagaaaggggcagaagagaatacaaaggggaacaagagaaat Alignment from Exonerate_protein2genome GCTGCCAAGACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tctttgatgcttgaggcaggttcaccatcctgcttctgctgCCTCCATAGACTCTGATGAGTGTCTAGGAACACCCTGCCAGCAGAGATGTAAGAACTGTATTGGTAGCTACAAATGTTCTTGTTGTGCAGGCTTCCATTGCCACAGCAACCGACACTCCTGTATAGgtgcgtcaaagaaaggggcagaagagaatacaaaggggaacaagagaaat Alignment from Exonerate_coding2genome GCTGCCAAGACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tctttgatgcttgaggcaggttcaccatcctgcttctgctgCCTCCATAGACTCTGATGAGTGTCTAGGAACACCCTGCCAGCAGAGATGTAAGAACTGTATTGGTAGCTACAAATGTTCTTGTTGTGCAGGCTTCCATTGCCACAGCAACCGACACTCCTGTATAGgtgcgtcaaagaaaggggcagaagagaatacaaaggggaacaagagaaat Alignment from GeneWise ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tctttgatgcttgaggcaggttcaccatcctgcttctgctgcctccatagACTCTGATGAGTGTCTAGGAACACCCTGCCAGCAGAGATGTAAGAACTGTATTGGTAGCTACAAATGTTCTTGTTGTGCAGGCTTCCATTGCCACAGCAACCGACACTCCTGTATAGgtgcgtcaaagaaaggggcagaagagaatacaaaggggaacaagagaaat #### Vwce_ID2953_8 --> 2 - 0 Original Alignment ctTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagctTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTGCAGGGTCCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from CESAR ctTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagctTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTGCAGGGTCCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from Spaln_aa2Genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTGCAGGGTCCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from Spaln_nt2Genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTGCAGGGTCCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from Pairagon CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTGCAGGGTCCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from Exonerate_protein2genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTGCAGGGTCCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from Exonerate_coding2genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTGCAGGGTCCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat Alignment from GeneWise CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG agtgcctgcaagctttccccactgcctttgtgtgtgtgtatcattttcagCTTTCCCAAAAGCTGTTCTGGCACCATCAGCAATCTTACAACCCCGATTGCATCCAGCCACAATGTCCTTGCTCCTTCCTGAAGCAGGGCAGCCTGCACTCTCCCCAGGACACAGTCCCCCACCAGGAGCACCAGGCTATCCTACTGGGGTTGGAACAATTAGCCAGCCATCTAATACACCTGTCCTACCTGCATACTTTCCAACCCAGCTGGTCTCTACCCCAGTGCCAAGTACATCCCCACTGGGGACCCTTGTACCCCCTTTACTTCTCCAGGGAACTGTTGGGACCCCATCATCACCCAGGGGTCCAGAAAGTCCAGAGCTGGGTGCAGGGTCCTCTTCCTGCTGGCACTTGGGTGTTACATACAAATCAGGCAGTCACTGGAACCAGCCTGGATGTTCTCAGTGCTTATGCCAGgtgggttggtgtggaggtccaatgactccacaagtgaatattctagccat #### Vwce_ID2959_14 --> 2 - 0 Original Alignment gcTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG attgtagctcatccaggaggtattccaccctctcctctctctctccccagggTGCTCACTAGATGACAATGGGGTGGAGTTCCCAATTGGACCCATCTGGTCACCTGGTGGTCCATGTGAATTATGTGTGTGCCAAgtgatgggattcacatcataacatctagttactgagtggttacatcaaag Alignment from CESAR gcTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG attgtagctcatccaggaggtattccaccctctcctctctctctccccagggTGCTCACTAGATGACAATGGGGTGGAGTTCCCAATTGGACCCATCTGGTCACCTGGTGGTCCATGTGAATTATGTGTGTGCCAAgtgatgggattcacatcataacatctagttactgagtggttacatcaaag Alignment from Spaln_aa2Genome GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG attgtagctcatccaggaggtattccaccctctcctctctctctccccagGGTGCTCACTAGATGACAATGGGGTGGAGTTCCCAATTGGACCCATCTGGTCACCTGGTGGTCCATGTGAATTATGTGTGTGCCAAgtgatgggattcacatcataacatctagttactgagtggttacatcaaag Alignment from Spaln_nt2Genome GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG attgtagctcatccaggaggtattccaccctctcctctctctctccccagGGTGCTCACTAGATGACAATGGGGTGGAGTTCCCAATTGGACCCATCTGGTCACCTGGTGGTCCATGTGAATTATGTGTGTGCCAAgtgatgggattcacatcataacatctagttactgagtggttacatcaaag Alignment from Pairagon GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG attgtagctcatccaggaggtattccaccctctcctctctctctccccagGGTGCTCACTAGATGACAATGGGGTGGAGTTCCCAATTGGACCCATCTGGTCACCTGGTGGTCCATGTGAATTATGTGTGTGCCAAgtgatgggattcacatcataacatctagttactgagtggttacatcaaag Alignment from Exonerate_protein2genome GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG attgtagctcatccaggaggtattccaccctctcctctctctctccccagGGTGCTCACTAGATGACAATGGGGTGGAGTTCCCAATTGGACCCATCTGGTCACCTGGTGGTCCATGTGAATTATGTGTGTGCCAAgtgatgggattcacatcataacatctagttactgagtggttacatcaaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG attgtagctcatccaggaggtattccaccctctcctctctctctccccagGGTGCTCACTAGATGACAATGGGGTGGAGTTCCCAATTGGACCCATCTGGTCACCTGGTGGTCCATGTGAATTATGTGTGTGCCAAgtgatgggattcacatcataacatctagttactgagtggttacatcaaag #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagacTGTAATTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagacTGTAATTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagACTGTAATTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagACTGTAATTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagACTGTAATTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG actgcctcttagactcccctgccctttccttctccatcttgcctccctagACTGTAATTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGgcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from Exonerate_coding2genome actgcctcttagactcccctgccctttccttctccatcttgcctccctagactgtaattttgaagggagaaaggtagtcaatggtcaggttttcaccttagacgatgagccctgtacccgatgcatctgccaggcaggagagagagggaaggagcttacagtttgccctcatggacttacaga Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGCTGGGAGAG---------------GTG actgcctcttagactcccctgccctttccttctccatcttgcctccctagACTGTAATTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGACGATGAGCCCTGTACCCGATGCATCTGCCAGGCAGGAGAGAGAGGGAAGGAGCTTACAgtttgccctcatggacttacaga #### Wdr74_ID2314_4 --> 1 - 0 Original Alignment cACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA tagagggaaatttatagcactaccaaatactcttgttcttgtcctctcaggACTCTTATTACATGCGTCGATTCTGGAATCCTGAGAGTCTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtgagtttactccctcatcatcatagatggcttgaataagatattaatgt Alignment from CESAR cACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA tagagggaaatttatagcactaccaaatactcttgttcttgtcctctcaggACTCTTATTACATGCGTCGATTCTGGAATCCTGAGAGTCTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtgagtttactccctcatcatcatagatggcttgaataagatattaatgt Alignment from Spaln_aa2Genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA tagagggaaatttatagcactaccaaatactcttgttcttgtcctctcagGACTCTTATTACATGCGTCGATTCTGGAATCCTGAGAGTCTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtgagtttactccctcatcatcatagatggcttgaataagatattaatgt Alignment from Spaln_nt2Genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA tagagggaaatttatagcactaccaaatactcttgttcttgtcctctcagGACTCTTATTACATGCGTCGATTCTGGAATCCTGAGAGTCTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtgagtttactccctcatcatcatagatggcttgaataagatattaatgt Alignment from Pairagon CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA tagagggaaatttatagcactaccaaatactcttgttcttgtcctctcagGACTCTTATTACATGCGTCGATTCTGGAATCCTGAGAGTCTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtgagtttactccctcatcatcatagatggcttgaataagatattaatgt Alignment from Exonerate_protein2genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA tagagggaaatttatagcactaccaaatactcttgttcttgtcctctcagGACTCTTATTACATGCGTCGATTCTGGAATCCTGAGAGTCTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtgagtttactccctcatcatcatagatggcttgaataagatattaatgt Alignment from Exonerate_coding2genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA tagagggaaatttatagcactaccaaatactcttgttcttgtcctctcagGACTCTTATTACATGCGTCGATTCTGGAATCCTGAGAGTCTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtgagtttactccctcatcatcatagatggcttgaataagatattaatgt Alignment from GeneWise CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA tagagggaaatttatagcactaccaaatactcttgttcttgtcctctcagGACTCTTATTACATGCGTCGATTCTGGAATCCTGAGAGTCTGGTGTGAGAATGATAGAGAGGCATCTTCTGACCCAgtgagtttactccctcatcatcatagatggcttgaataagatattaatgt #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg ttaggcaattcaggagccacataaatcgactctgtgaactctgctttcagtTCTGTCATTGTGGGGAATACTCATGGTGAGCTGGCAGAGATTGACTTTCGACAAggtgagtttgccattgtgttcttgagaatgaatgtagtctgccaaacattt Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg ttaggcaattcaggagccacataaatcgactctgtgaactctgctttcagtTCTGTCATTGTGGGGAATACTCATGGTGAGCTGGCAGAGATTGACTTTCGACAAggtgagtttgccattgtgttcttgagaatgaatgtagtctgccaaatttcc Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG ttaggcaattcaggagccacataaatcgactctgtgaactctgctttcagTTCTGTCATTGTGGGGAATACTCATGGTGAGCTGGCAGAGATTGACTTTCGACAAGgtgagtttgccattgtgttcttgagaatgaatgtagtctgccaaacattt Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG ttaggcaattcaggagccacataaatcgactctgtgaactctgctttcagTTCTGTCATTGTGGGGAATACTCATGGTGAGCTGGCAGAGATTGACTTTCGACAAGgtgagtttgccattgtgttcttgagaatgaatgtagtctgccaaacattt Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG ttaggcaattcaggagccacataaatcgactctgtgaactctgctttcagTTCTGTCATTGTGGGGAATACTCATGGTGAGCTGGCAGAGATTGACTTTCGACAAGgtgagtttgccattgtgttcttgagaatgaatgtagtctgccaaacattt Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG ttaggcaattcaggagccacataaatcgactctgtgaactctgctttcagTTCTGTCATTGTGGGGAATACTCATGGTGAGCTGGCAGAGATTGACTTTCGACAAGgtgagtttgccattgtgttcttgagaatgaatgtagtctgccaaacattt Alignment from Exonerate_coding2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG ttaggcaattcaggagccacataaatcgactctgtgaactctgctttcagTTCTGTCATTGTGGGGAATACTCATGGTGAGCTGGCAGAGATTGACTTTCGACAAGgtgagtttgccattgtgttcttgagaatgaatgtagtctgccaaacattt Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAGGGCG ttaggcaattcaggagccacataaatcgactctgtgaactctgctttcagTTCTGTCATTGTGGGGAATACTCATGGTGAGCTGGCAGAGATTGACTTTCGACAAGGTGAgtttgccattgtgttcttgagaatgaatgtagtctgccaaacattt #### Wdr96_ID10335_36 --> 0 - 0 Original Alignment TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG tttagcaaaatcaataattgtgtattgctcttcattacttattttcatagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATCCTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtaagagcagtataaactaattaagccatagtctaccataatgctgctat Alignment from CESAR TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG tttagcaaaatcaataattgtgtattgctcttcattacttattttcatagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATCCTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtaagagcagtataaactaattaagccatagtctaccataatgctgctat Alignment from Spaln_aa2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG tttagcaaaatcaataattgtgtattgctcttcattacttattttcatagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATCCTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtaagagcagtataaactaattaagccatagtctaccataatgctgctat Alignment from Spaln_nt2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG tttagcaaaatcaataattgtgtattgctcttcattacttattttcatagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATCCTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtaagagcagtataaactaattaagccatagtctaccataatgctgctat Alignment from Pairagon TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG tttagcaaaatcaataattgtgtattgctcttcattacttattttcatagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATCCTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtaagagcagtataaactaattaagccatagtctaccataatgctgctat Alignment from Exonerate_protein2genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG tttagcaaaatcaataattgtgtattgctcttcattacttattttcatagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATCCTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtaagagcagtataaactaattaagccatagtctaccataatgctgctat Alignment from Exonerate_coding2genome tttagcaaaatcaataattgtgtattgctcttcattacttattttcatagtacctaaatgaaccaaactacaggaatgtaatcactatcctgattgggattatggagcagacaattggtgttgtagataaggtaagagcagtataaactaattaagccatagtctaccataatgctgctat Alignment from GeneWise TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG tttagcaaaatcaataattgtgtattgctcttcattacttattttcatagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATCCTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtaagagcagtataaactaattaagccatagtctaccataatgctgctat #### Wdr96_ID10337_34 --> 1 - 0 Original Alignment aTTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG ggctaactttggatacagcttgtcgaagaacatgtcccccgtttccccaggCTAGAAGGTGAGAAGGTGAGATTCCAGCTGAATTTGACAGTACAAATCCTTCTCAAGCAAGGGCAGGTAGAGCTTGACAACTTCCAATTGATGCTCGAATACTCTGATGCAATTCTAATTAACAAGAATATAATTGAAGATTTGAATTCTGTAATACGGgtaagtcagatccgtagactacaatttgcatccagaattgtatctgacat Alignment from CESAR aTTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG ggctaactttggatacagcttgtcgaagaacatgtcccccgtttccccaggCTAGAAGGTGAGAAGGTGAGATTCCAGCTGAATTTGACAGTACAAATCCTTCTCAAGCAAGGGCAGGTAGAGCTTGACAACTTCCAATTGATGCTCGAATACTCTGATGCAATTCTAATTAACAAGAATATAATTGAAGATTTGAATTCTGTAATACGGgtaagtcagatccgtagactacaatttgcatccagaattgtatctgacat Alignment from Spaln_aa2Genome ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG ggctaactttggatacagcttgtcgaagaacatgtcccccgtttccccagGCTAGAAGGTGAGAAGGTGAGATTCCAGCTGAATTTGACAGTACAAATCCTTCTCAAGCAAGGGCAGGTAGAGCTTGACAACTTCCAATTGATGCTCGAATACTCTGATGCAATTCTAATTAACAAGAATATAATTGAAGATTTGAATTCTGTAATACGGgtaagtcagatccgtagactacaatttgcatccagaattgtatctgacat Alignment from Spaln_nt2Genome ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG ggctaactttggatacagcttgtcgaagaacatgtcccccgtttccccagGCTAGAAGGTGAGAAGGTGAGATTCCAGCTGAATTTGACAGTACAAATCCTTCTCAAGCAAGGGCAGGTAGAGCTTGACAACTTCCAATTGATGCTCGAATACTCTGATGCAATTCTAATTAACAAGAATATAATTGAAGATTTGAATTCTGTAATACGGgtaagtcagatccgtagactacaatttgcatccagaattgtatctgacat Alignment from Pairagon ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG ggctaactttggatacagcttgtcgaagaacatgtcccccgtttccccagGCTAGAAGGTGAGAAGGTGAGATTCCAGCTGAATTTGACAGTACAAATCCTTCTCAAGCAAGGGCAGGTAGAGCTTGACAACTTCCAATTGATGCTCGAATACTCTGATGCAATTCTAATTAACAAGAATATAATTGAAGATTTGAATTCTGTAATACGGgtaagtcagatccgtagactacaatttgcatccagaattgtatctgacat Alignment from Exonerate_protein2genome ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG ggctaactttggatacagcttgtcgaagaacatgtcccccgtttccccagGCTAGAAGGTGAGAAGGTGAGATTCCAGCTGAATTTGACAGTACAAATCCTTCTCAAGCAAGGGCAGGTAGAGCTTGACAACTTCCAATTGATGCTCGAATACTCTGATGCAATTCTAATTAACAAGAATATAATTGAAGATTTGAATTCTGTAATACGGgtaagtcagatccgtagactacaatttgcatccagaattgtatctgacat Alignment from Exonerate_coding2genome ggctaactttggatacagcttgtcgaagaacatgtcccccgtttccccaggctagaaggtgagaaggtgagattccagctgaatttgacagtacaaatccttctcaagcaagggcaggtagagcttgacaacttccaattgatgctcgaatactctgatgcaattctaattaacaagaatataattgaagatttgaattctgtaatacgggtaagtcagatccgtagactacaatttgcatccagaattgtatctgacat Alignment from GeneWise ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG ggctaactttggatacagcttgtcgaagaacatgtcccccgtttccccagGCTAGAAGGTGAGAAGGTGAGATTCCAGCTGAATTTGACAGTACAAATCCTTCTCAAGCAAGGGCAGGTAGAGCTTGACAACTTCCAATTGATGCTCGAATACTCTGATGCAATTCTAATTAACAAGAATATAATTGAAGATTTGAATTCTGTAATACGGgtaagtcagatccgtagactacaatttgcatccagaattgtatctgacat #### Wdr96_ID10343_28 --> 0 - 0 Original Alignment TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG aacatgtgaattttccaatcattcttttccttgttgtcttctccctccagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAACTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAGAGACTTTTTGAAAGGAGGGTGAGGGCTGAAATGGTTGTTAACCAGgttggcaacgcctcttgcactgactagacggcacaagcatcctttcttgg Alignment from CESAR TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG aacatgtgaattttccaatcattcttttccttgttgtcttctccctccagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAACTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAGAGACTTTTTGAAAGGAGGGTGAGGGCTGAAATGGTTGTTAACCAGgttggcaacgcctcttgcactgactagacggcacaagcatcctttcttgg Alignment from Spaln_aa2Genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG aacatgtgaattttccaatcattcttttccttgttgtcttctccctccagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAACTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAGAGACTTTTTGAAAGGAGGGTGAGGGCTGAAATGGTTGTTAACCAGgttggcaacgcctcttgcactgactagacggcacaagcatcctttcttgg Alignment from Spaln_nt2Genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG aacatgtgaattttccaatcattcttttccttgttgtcttctccctccagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAACTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAGAGACTTTTTGAAAGGAGGGTGAGGGCTGAAATGGTTGTTAACCAGgttggcaacgcctcttgcactgactagacggcacaagcatcctttcttgg Alignment from Pairagon TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG aacatgtgaattttccaatcattcttttccttgttgtcttctccctccagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAACTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAGAGACTTTTTGAAAGGAGGGTGAGGGCTGAAATGGTTGTTAACCAGgttggcaacgcctcttgcactgactagacggcacaagcatcctttcttgg Alignment from Exonerate_protein2genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG aacatgtgaattttccaatcattcttttccttgttgtcttctccctccagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAACTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAGAGACTTTTTGAAAGGAGGGTGAGGGCTGAAATGGTTGTTAACCAGgttggcaacgcctcttgcactgactagacggcacaagcatcctttcttgg Alignment from Exonerate_coding2genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG aacatgtgaattttccaatcattcttttccttgttgtcttctccctccagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAACTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAGAGACTTTTTGAAAGGAGGGTGAGGGCTGAAATGGTTGTTAACCAGgttggcaacgcctcttgcactgactagacggcacaagcatcctttcttgg Alignment from GeneWise TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG aacatgtgaattttccaatcattcttttccttgttgtcttctccctccagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAACTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAGAGACTTTTTGAAAGGAGGGTGAGGGCTGAAATGGTTGTTAACCAGgttggcaacgcctcttgcactgactagacggcacaagcatcctttcttgg #### Wdr96_ID10344_27 --> 0 - 0 Original Alignment GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gagccccaagatgtgaatgccgaacctatctctcctcactctggtttcagGTGTTCCCACAACCTCCTTTTATGGCAAAAGCTGATGCCTTATGGAGTGGGGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAATTGAATGAAGAGAGAGACAAATACAGAAAAgtatgttagcgaattaacaggaatcagtaatccccctacacctccacatc Alignment from CESAR GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gagccccaagatgtgaatgccgaacctatctctcctcactctggtttcagGTGTTCCCACAACCTCCTTTTATGGCAAAAGCTGATGCCTTATGGAGTGGGGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAATTGAATGAAGAGAGAGACAAATACAGAAAAgtatgttagcgaattaacaggaatcagtaatccccctacacctccacatc Alignment from Spaln_aa2Genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gagccccaagatgtgaatgccgaacctatctctcctcactctggtttcagGTGTTCCCACAACCTCCTTTTATGGCAAAAGCTGATGCCTTATGGAGTGGGGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAATTGAATGAAGAGAGAGACAAATACAGAAAAgtatgttagcgaattaacaggaatcagtaatccccctacacctccacatc Alignment from Spaln_nt2Genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gagccccaagatgtgaatgccgaacctatctctcctcactctggtttcagGTGTTCCCACAACCTCCTTTTATGGCAAAAGCTGATGCCTTATGGAGTGGGGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAATTGAATGAAGAGAGAGACAAATACAGAAAAgtatgttagcgaattaacaggaatcagtaatccccctacacctccacatc Alignment from Pairagon GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gagccccaagatgtgaatgccgaacctatctctcctcactctggtttcagGTGTTCCCACAACCTCCTTTTATGGCAAAAGCTGATGCCTTATGGAGTGGGGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAATTGAATGAAGAGAGAGACAAATACAGAAAAgtatgttagcgaattaacaggaatcagtaatccccctacacctccacatc Alignment from Exonerate_protein2genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gagccccaagatgtgaatgccgaacctatctctcctcactctggtttcagGTGTTCCCACAACCTCCTTTTATGGCAAAAGCTGATGCCTTATGGAGTGGGGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAATTGAATGAAGAGAGAGACAAATACAGAAAAgtatgttagcgaattaacaggaatcagtaatccccctacacctccacatc Alignment from Exonerate_coding2genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gagccccaagatgtgaatgccgaacctatctctcctcactctggtttcagGTGTTCCCACAACCTCCTTTTATGGCAAAAGCTGATGCCTTATGGAGTGGGGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAATTGAATGAAGAGAGAGACAAATACAGAAAAgtatgttagcgaattaacaggaatcagtaatccccctacacctccacatc Alignment from GeneWise GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gagccccaagatgtgaatgccgaacctatctctcctcactctggtttcagGTGTTCCCACAACCTCCTTTTATGGCAAAAGCTGATGCCTTATGGAGTGGGGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAATTGAATGAAGAGAGAGACAAATACAGAAAAgtatgttagcgaattaacaggaatcagtaatccccctacacctccacatc #### Wdr96_ID10352_19 --> 0 - 0 Original Alignment GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT tagtgccctctatcacccaccatgttaagttgtttgattcccttttctagGCTGTCAAGAAAGAGCTGAGAATATTTTCATCTAGGAGAAGGGAGAGCAAGAGGGGGGTTAAAGAGCTTGCACAGGTTgtaaggtcatcagtgctgtgatggtacttatcagaatagtcatgggtctg Alignment from CESAR GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT tagtgccctctatcacccaccatgttaagttgtttgattcccttttctagGCTGTCAAGAAAGAGCTGAGAATATTTTCATCTAGGAGAAGGGAGAGCAAGAGGGGGGTTAAAGAGCTTGCACAGGTTgtaaggtcatcagtgctgtgatggtacttatcagaatagtcatgggtctg Alignment from Spaln_aa2Genome GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT tagtgccctctatcacccaccatgttaagttgtttgattcccttttctagGCTGTCAAGAAAGAGCTGAGAATATTTTCATCTAGGAGAAGGGAGAGCAAGAGGGGGGTTAAAGAGCTTGCACAGGTTgtaaggtcatcagtgctgtgatggtacttatcagaatagtcatgggtctg Alignment from Spaln_nt2Genome GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT tagtgccctctatcacccaccatgttaagttgtttgattcccttttctagGCTGTCAAGAAAGAGCTGAGAATATTTTCATCTAGGAGAAGGGAGAGCAAGAGGGGGGTTAAAGAGCTTGCACAGGTTgtaaggtcatcagtgctgtgatggtacttatcagaatagtcatgggtctg Alignment from Pairagon GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT tagtgccctctatcacccaccatgttaagttgtttgattcccttttctagGCTGTCAAGAAAGAGCTGAGAATATTTTCATCTAGGAGAAGGGAGAGCAAGAGGGGGGTTAAAGAGCTTGCACAGGTTgtaaggtcatcagtgctgtgatggtacttatcagaatagtcatgggtctg Alignment from Exonerate_protein2genome GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT tagtgccctctatcacccaccatgttaagttgtttgattcccttttctagGCTGTCAAGAAAGAGCTGAGAATATTTTCATCTAGGAGAAGGGAGAGCAAGAGGGGGGTTAAAGAGCTTGCACAGGTTgtaaggtcatcagtgctgtgatggtacttatcagaatagtcatgggtctg Alignment from Exonerate_coding2genome tagtgccctctatcacccaccatgttaagttgtttgattcccttttctaggctgtcaagaaagagctgagaatattttcatctaggagaagggagagcaagaggggggttaaagagcttgcacaggttgtaaggtcatcagtgctgtgatggtacttatcagaatagtcatgggtctg Alignment from GeneWise GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT tagtgccctctatcacccaccatgttaagttgtttgattcccttttctagGCTGTCAAGAAAGAGCTGAGAATATTTTCATCTAGGAGAAGGGAGAGCAAGAGGGGGGTTAAAGAGCTTGCACAGGTTgtaaggtcatcagtgctgtgatggtacttatcagaatagtcatgggtctg #### Wdr96_ID10355_16 --> 0 - 2 Original Alignment GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGaa ggttgaagctctcttgtctgaaatagaaggtggtattttctgttttgtagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAGATGTCATTG---GGTCAACACATTCTGGTAAATGGAAAAGATGACAATGCCCTTGTATGTCTCAAGCTGaagtaagtataagtaaaacacaactccacaacaaccagagcaatacgtagat Alignment from CESAR GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGaa ggttgaagctctcttgtctgaaatagaaggtggtattttctgttttgtagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAGATGTCATTG---GGTCAACACATTCTGGTAAATGGAAAAGATGACAATGCCCTTGTATGTCTCAAGCTGaagtaagtataagtaaaacacaactccacaacaaccagagcaatacgtagat Alignment from Spaln_aa2Genome GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGAA ggttgaagctctcttgtctgaaatagaaggtggtattttctgttttgtagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAGATGTCATTG---GGTCAACACATTCTGGTAAATGGAAAAGATGACAATGCCCTTGTATGTCTCAAGCTGAAgtaagtataagtaaaacacaactccacaacaaccagagcaatacgtagat Alignment from Spaln_nt2Genome GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGAA ggttgaagctctcttgtctgaaatagaaggtggtattttctgttttgtagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAGATGTCATTG---GGTCAACACATTCTGGTAAATGGAAAAGATGACAATGCCCTTGTATGTCTCAAGCTGAAgtaagtataagtaaaacacaactccacaacaaccagagcaatacgtagat Alignment from Pairagon GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGAA ggttgaagctctcttgtctgaaatagaaggtggtattttctgttttgtagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAGATGTCATTG---GGTCAACACATTCTGGTAAATGGAAAAGATGACAATGCCCTTGTATGTCTCAAGCTGAAgtaagtataagtaaaacacaactccacaacaaccagagcaatacgtagat Alignment from Exonerate_protein2genome GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGAA ggttgaagctctcttgtctgaaatagaaggtggtattttctgttttgtagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAGATGTCATTG---GGTCAACACATTCTGGTAAATGGAAAAGATGACAATGCCCTTGTATGTCTCAAGCTGAAgtaagtataagtaaaacacaactccacaacaaccagagcaatacgtagat Alignment from Exonerate_coding2genome ggttgaagctctcttgtctgaaatagaaggtggtattttctgttttgtaggagacgtctgttcgatgccggagttactctcatcagggacaggggctccagaacatgaagatgtcattgggtcaacacattctggtaaatggaaaagatgacaatgcccttgtatgtctcaagctgaagtaagtataagtaaaacacaactccacaacaaccagagcaatacgtagat Alignment from GeneWise ---ACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGAA ggttgaagctctcttgtctgaaatagaaggtggtattttctgttttgtagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAGATGTCATTG---GGTCAACACATTCTGGTAAATGGAAAAGATGACAATGCCCTTGTATGTCTCAAGCTGAAgtaagtataagtaaaacacaactccacaacaaccagagcaatacgtagat #### Wdr96_ID10358_13 --> 2 - 1 Original Alignment agACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAg gaaagaggactatgtttatgtctacaaagtatttccttctctctgagcagacACTGGTAAGGACATCAAATATATATCCACTGTATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCCTGTATCCGCTCCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGggtaagcttaacttgattcccaccctgtgatgactcagcactggcacctat Alignment from CESAR agACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAg gaaagaggactatgtttatgtctacaaagtatttccttctctctgagcagacACTGGTAAGGACATCAAATATATATCCACTGTATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCCTGTATCCGCTCCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGggtaagcttaacttgattcccaccctgtgatgactcagcactggcacctat Alignment from Spaln_aa2Genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gaaagaggactatgtttatgtctacaaagtatttccttctctctgagcagACACTGGTAAGGACATCAAATATATATCCACTGTATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCCTGTATCCGCTCCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtaagcttaacttgattcccaccctgtgatgactcagcactggcacctat Alignment from Spaln_nt2Genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gaaagaggactatgtttatgtctacaaagtatttccttctctctgagcagACACTGGTAAGGACATCAAATATATATCCACTGTATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCCTGTATCCGCTCCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtaagcttaacttgattcccaccctgtgatgactcagcactggcacctat Alignment from Pairagon AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gaaagaggactatgtttatgtctacaaagtatttccttctctctgagcagACACTGGTAAGGACATCAAATATATATCCACTGTATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCCTGTATCCGCTCCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtaagcttaacttgattcccaccctgtgatgactcagcactggcacctat Alignment from Exonerate_protein2genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gaaagaggactatgtttatgtctacaaagtatttccttctctctgagcagACACTGGTAAGGACATCAAATATATATCCACTGTATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCCTGTATCCGCTCCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtaagcttaacttgattcccaccctgtgatgactcagcactggcacctat Alignment from Exonerate_coding2genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gaaagaggactatgtttatgtctacaaagtatttccttctctctgagcagACACTGGTAAGGACATCAAATATATATCCACTGTATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCCTGTATCCGCTCCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtaagcttaacttgattcccaccctgtgatgactcagcactggcacctat Alignment from GeneWise AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gaaagaggactatgtttatgtctacaaagtatttccttctctctgagcagACACTGGTAAGGACATCAAATATATATCCACTGTATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCCTGTATCCGCTCCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtaagcttaacttgattcccaccctgtgatgactcagcactggcacctat #### Wdr96_ID10359_12 --> 1 - 1 Original Alignment gTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTg tctattatcagagctaagttattttgttcatgtctcctttctctttgcaggTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGATACCAGACCTCCAAAGACACATCAAATTTTTGGATTCACCggtaatctgtgggagctgctcatgtaaacattgtttcagacctgccaactt Alignment from CESAR gTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTg tctattatcagagctaagttattttgttcatgtctcctttctctttgcaggTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGATACCAGACCTCCAAAGACACATCAAATTTTTGGATTCACCggtaatctgtgggagctgctcatgtaaacattgtttcagacctgccaactt Alignment from Spaln_aa2Genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tctattatcagagctaagttattttgttcatgtctcctttctctttgcagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGATACCAGACCTCCAAAGACACATCAAATTTTTGGATTCACCGgtaatctgtgggagctgctcatgtaaacattgtttcagacctgccaactt Alignment from Spaln_nt2Genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tctattatcagagctaagttattttgttcatgtctcctttctctttgcagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGATACCAGACCTCCAAAGACACATCAAATTTTTGGATTCACCGgtaatctgtgggagctgctcatgtaaacattgtttcagacctgccaactt Alignment from Pairagon GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tctattatcagagctaagttattttgttcatgtctcctttctctttgcagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGATACCAGACCTCCAAAGACACATCAAATTTTTGGATTCACCGgtaatctgtgggagctgctcatgtaaacattgtttcagacctgccaactt Alignment from Exonerate_protein2genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tctattatcagagctaagttattttgttcatgtctcctttctctttgcagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGATACCAGACCTCCAAAGACACATCAAATTTTTGGATTCACCGgtaatctgtgggagctgctcatgtaaacattgtttcagacctgccaactt Alignment from Exonerate_coding2genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tctattatcagagctaagttattttgttcatgtctcctttctctttgcagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGATACCAGACCTCCAAAGACACATCAAATTTTTGGATTCACCGgtaatctgtgggagctgctcatgtaaacattgtttcagacctgccaactt Alignment from GeneWise GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tctattatcagagctaagttattttgttcatgtctcctttctctttgcagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGATACCAGACCTCCAAAGACACATCAAATTTTTGGATTCACCGgtaatctgtgggagctgctcatgtaaacattgtttcagacctgccaactt #### Wdr96_ID10365_6 --> 0 - 1 Original Alignment CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGg aagaaaagtattctgtattcaaccaactatgttgacattttgatttttagCCAAAAGATGACATCTATCCTTTGCTGCAGCCAACGATGCACTGTTGGACTCCATCAAGTGACTTATATGTAGGTTGTGAAGAAGGTCATCCTTTGATGATCAATACAGAAACCTTGAAGGTGACTGTACTGCAGAAGGCTGAGGAGTTTCCCCTCCCAggtgcagcagtactcctgattatgtgattatgactgaatactatgcagaga Alignment from CESAR CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGg aagaaaagtattctgtattcaaccaactatgttgacattttgatttttagCCAAAAGATGACATCTATCCTTTGCTGCAGCCAACGATGCACTGTTGGACTCCATCAAGTGACTTATATGTAGGTTGTGAAGAAGGTCATCCTTTGATGATCAATACAGAAACCTTGAAGGTGACTGTACTGCAGAAGGCTGAGGAGTTTCCCCTCCCAggtgcagcagtactcctgattatgtgattatgactgaatactatgcagaga Alignment from Spaln_aa2Genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG aagaaaagtattctgtattcaaccaactatgttgacattttgatttttagCCAAAAGATGACATCTATCCTTTGCTGCAGCCAACGATGCACTGTTGGACTCCATCAAGTGACTTATATGTAGGTTGTGAAGAAGGTCATCCTTTGATGATCAATACAGAAACCTTGAAGGTGACTGTACTGCAGAAGGCTGAGGAGTTTCCCCTCCCAGgtgcagcagtactcctgattatgtgattatgactgaatactatgcagaga Alignment from Spaln_nt2Genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG aagaaaagtattctgtattcaaccaactatgttgacattttgatttttagCCAAAAGATGACATCTATCCTTTGCTGCAGCCAACGATGCACTGTTGGACTCCATCAAGTGACTTATATGTAGGTTGTGAAGAAGGTCATCCTTTGATGATCAATACAGAAACCTTGAAGGTGACTGTACTGCAGAAGGCTGAGGAGTTTCCCCTCCCAGgtgcagcagtactcctgattatgtgattatgactgaatactatgcagaga Alignment from Pairagon CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG aagaaaagtattctgtattcaaccaactatgttgacattttgatttttagCCAAAAGATGACATCTATCCTTTGCTGCAGCCAACGATGCACTGTTGGACTCCATCAAGTGACTTATATGTAGGTTGTGAAGAAGGTCATCCTTTGATGATCAATACAGAAACCTTGAAGGTGACTGTACTGCAGAAGGCTGAGGAGTTTCCCCTCCCAGgtgcagcagtactcctgattatgtgattatgactgaatactatgcagaga Alignment from Exonerate_protein2genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG aagaaaagtattctgtattcaaccaactatgttgacattttgatttttagCCAAAAGATGACATCTATCCTTTGCTGCAGCCAACGATGCACTGTTGGACTCCATCAAGTGACTTATATGTAGGTTGTGAAGAAGGTCATCCTTTGATGATCAATACAGAAACCTTGAAGGTGACTGTACTGCAGAAGGCTGAGGAGTTTCCCCTCCCAGgtgcagcagtactcctgattatgtgattatgactgaatactatgcagaga Alignment from Exonerate_coding2genome aagaaaagtattctgtattcaaccaactatgttgacattttgatttttagccaaaagatgacatctatcctttgctgcagccaacgatgcactgttggactccatcaagtgacttatatgtaggttgtgaagaaggtcatcctttgatgatcaatacagaaaccttgaaggtgactgtactgcagaaggctgaggagtttcccctcccaggtgcagcagtactcctgattatgtgattatgactgaatactatgcagaga Alignment from GeneWise CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG aagaaaagtattctgtattcaaccaactatgttgacattttgatttttagCCAAAAGATGACATCTATCCTTTGCTGCAGCCAACGATGCACTGTTGGACTCCATCAAGTGACTTATATGTAGGTTGTGAAGAAGGTCATCCTTTGATGATCAATACAGAAACCTTGAAGGTGACTGTACTGCAGAAGGCTGAGGAGTTTCCCCTCCCAGgtgcagcagtactcctgattatgtgattatgactgaatactatgcagaga #### Wdr96_ID10366_5 --> 1 - 0 Original Alignment gTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGAT---------------CTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gcttgttaatatgggtttcatggcaattcgtccccaactcttcctttcaggTCTGTTAAGCTACCTCTCAAAGATGCTACTTTCCTGAATGAGCCCGACACGCTCTTTGCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGC---GTCTTGCCTCTATCAGCTATTGCAGGGCTGGTTGGGGAAGACGGTGAGCCCTTCAGGgtactgataatttgtagctaacacttggaataaggaagtaaagacacgaa Alignment from CESAR gTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTA------------TTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gcttgttaatatgggtttcatggcaattcgtccccaactcttcctttcaggTCTGTTAAGCTACCTCTCAAAGATGCTACTTTCCTGAATGAGCCCGACACGCTCTTTGCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGCGTCTTGCCTCTATCAGCTATTGCAGGGCTGGTTGGGGAAGACGGTGAGCCCTTCAGGgtactgataatttgtagctaacacttggaataaggaagtaaagacacgaa Alignment from Spaln_aa2Genome GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCC------------GTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gcttgttaatatgggtttcatggcaattcgtccccaactcttcctttcagGTCTGTTAAGCTACCTCTCAAAGATGCTACTTTCCTGAATGAGCCCGACACGCTCTTTGCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGCGTCTTGCCTCTATCAGCTATTGCAGGGCTGGTTGGGGAAGACGGTGAGCCCTTCAGGgtactgataatttgtagctaacacttggaataaggaagtaaagacacgaa Alignment from Spaln_nt2Genome GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTA------------TTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gcttgttaatatgggtttcatggcaattcgtccccaactcttcctttcagGTCTGTTAAGCTACCTCTCAAAGATGCTACTTTCCTGAATGAGCCCGACACGCTCTTTGCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGCGTCTTGCCTCTATCAGCTATTGCAGGGCTGGTTGGGGAAGACGGTGAGCCCTTCAGGgtactgataatttgtagctaacacttggaataaggaagtaaagacacgaa Alignment from Pairagon GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGG------------ACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gcttgttaatatgggtttcatggcaattcgtccccaactcttcctttcagGTCTGTTAAGCTACCTCTCAAAGATGCTACTTTCCTGAATGAGCCCGACACGCTCTTTGCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGCGTCTTGCCTCTATCAGCTATTGCAGGGCTGGTTGGGGAAGACGGTGAGCCCTTCAGGgtactgataatttgtagctaacacttggaataaggaagtaaagacacgaa Alignment from Exonerate_protein2genome GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGA------------CCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gcttgttaatatgggtttcatggcaattcgtccccaactcttcctttcagGTCTGTTAAGCTACCTCTCAAAGATGCTACTTTCCTGAATGAGCCCGACACGCTCTTTGCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGCGTCTTGCCTCTATCAGCTATTGCAGGGCTGGTTGGGGAAGACGGTGAGCCCTTCAGGgtactgataatttgtagctaacacttggaataaggaagtaaagacacgaa Alignment from Exonerate_coding2genome gcttgttaatatgggtttcatggcaattcgtccccaactcttcctttcaggtctgttaagctacctctcaaagatgctactttcctgaatgagcccgacacgctctttgctactactcttccaaaagacctaatttatggtatagtaatttatggcgtcttgcctctatcagctattgcagggctggttggggaagacggtgagcccttcagggtactgataatttgtagctaacacttggaataaggaagtaaagacacgaa Alignment from GeneWise GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGA------------CCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gcttgttaatatgggtttcatggcaattcgtccccaactcttcctttcagGTCTGTTAAGCTACCTCTCAAAGATGCTACTTTCCTGAATGAGCCCGACACGCTCTTTGCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGCGTCTTGCCTCTATCAGCTATTGCAGGGCTGGTTGGGGAAGACGGTGAGCCCTTCAGGgtactgataatttgtagctaacacttggaataaggaagtaaagacacgaa #### Wdr96_ID10367_4 --> 1 - 2 Original Alignment gAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGG---ACCATTGAGAGAAGTAACCAGGAGCACCATTTC---AGGATAag atgaaatttgtcaatcatttactacttagtttgctgtcttcctgctccaggAATTGGGATTCTAGTGCAATATCATCCAAAGAATCCAACCCTGGTATGGATGTCAGCCATATGACCTTCAACCCCATGAATTGGCACCAAATGTGCTCAGCATGCACAAGTGCAATGACTGTATGGACCACCATTGAGAAAAGTAACCAAGACCAGCATTTCCAGCAGATTaggtacctgcctttagtgaggggggatttctacttgttactgacccttcatg Alignment from CESAR gAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGG---ACCATTGAGAGAAGTAACCAGGAGCACCATTTC---AGGATAag atgaaatttgtcaatcatttactacttagtttgctgtcttcctgctccaggAATTGGGATTCTAGTGCAATATCATCCAAAGAATCCAACCCTGGTATGGATGTCAGCCATATGACCTTCAACCCCATGAATTGGCACCAAATGTGCTCAGCATGCACAAGTGCAATGACTGTATGGACCACCATTGAGAAAAGTAACCAAGACCAGCATTTCCAGCAGATTaggtacctgcctttagtgaggggggatttctacttgttactgacccttcatg Alignment from Spaln_aa2Genome GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGG---ACCATTGAGAGAAGTAACCAGGAGCACCATTTC---AGGATAAG atgaaatttgtcaatcatttactacttagtttgctgtcttcctgctccagGAATTGGGATTCTAGTGCAATATCATCCAAAGAATCCAACCCTGGTATGGATGTCAGCCATATGACCTTCAACCCCATGAATTGGCACCAAATGTGCTCAGCATGCACAAGTGCAATGACTGTATGGACCACCATTGAGAAAAGTAACCAAGACCAGCATTTCCAGCAGATTAGgtacctgcctttagtgaggggggatttctacttgttactgacccttcatg Alignment from Spaln_nt2Genome GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCA---TTGAGAGAAGTAACCAGGAGCACCATTTC-AG--GATAAG atgaaatttgtcaatcatttactacttagtttgctgtcttcctgctccagGAATTGGGATTCTAGTGCAATATCATCCAAAGAATCCAACCCTGGTATGGATGTCAGCCATATGACCTTCAACCCCATGAATTGGCACCAAATGTGCTCAGCATGCACAAGTGCAATGACTGTATGGACCACCATTGAGAAAAGTAACCAAGACCAGCATTTCCAGCAGATTAGgtacctgcctttagtgaggggggatttctacttgttactgacccttcatg Alignment from Pairagon GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGG---ACCATTGAGAGAAGTAACCAGGAGCACCATTTC---AGGATAAG atgaaatttgtcaatcatttactacttagtttgctgtcttcctgctccagGAATTGGGATTCTAGTGCAATATCATCCAAAGAATCCAACCCTGGTATGGATGTCAGCCATATGACCTTCAACCCCATGAATTGGCACCAAATGTGCTCAGCATGCACAAGTGCAATGACTGTATGGACCACCATTGAGAAAAGTAACCAAGACCAGCATTTCCAGCAGATTAGgtacctgcctttagtgaggggggatttctacttgttactgacccttcatg Alignment from Exonerate_protein2genome GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGG---ACCATTGAGAGAAGTAACCAGGAGCACCATTTC---AGGATAAG atgaaatttgtcaatcatttactacttagtttgctgtcttcctgctccagGAATTGGGATTCTAGTGCAATATCATCCAAAGAATCCAACCCTGGTATGGATGTCAGCCATATGACCTTCAACCCCATGAATTGGCACCAAATGTGCTCAGCATGCACAAGTGCAATGACTGTATGGACCACCATTGAGAAAAGTAACCAAGACCAGCATTTCCAGCAGATTAGgtacctgcctttagtgaggggggatttctacttgttactgacccttcatg Alignment from Exonerate_coding2genome atgaaatttgtcaatcatttactacttagtttgctgtcttcctgctccaggaattgggattctagtgcaatatcatccaaagaatccaaccctggtatggatgtcagccatatgaccttcaaccccatgaattggcaccaaatgtgctcagcatgcacaagtgcaatgactgtatggaccaccattgagaaaagtaaccaagaccagcatttccagcagattaggtacctgcctttagtgaggggggatttctacttgttactgacccttcatg Alignment from GeneWise GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGGACC---ATTGAGAGAAGTAACCAGGAGCACCATTTCAGG---ATAAG atgaaatttgtcaatcatttactacttagtttgctgtcttcctgctccagGAATTGGGATTCTAGTGCAATATCATCCAAAGAATCCAACCCTGGTATGGATGTCAGCCATATGACCTTCAACCCCATGAATTGGCACCAAATGTGCTCAGCATGCACAAGTGCAATGACTGTATGGACCACCATTGAGAAAAGTAACCAAGACCAGCATTTCCAGCAGATTAGgtacctgcctttagtgaggggggatttctacttgttactgacccttcatg #### Wnt8b_ID9021_4 --> 2 - 1 Original Alignment ctAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGg ggaaattatagggcaatggatagaggcatgtcttccttcctgccatgcagctAACCAGAAGACTCCATTTGTACATACAATCATCTCTGCTGGGGTCATGTACACCCTAACTAGGAACTGCAGTCTAGGAGACTTGGACAATTGTGGATGTGATGACTCTCAGAATGGCCATTTGggtgagcaggaatgggtatagactggtgtgtgacaagaaagagaaagtagg Alignment from CESAR ctAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGg ggaaattatagggcaatggatagaggcatgtcttccttcctgccatgcagctAACCAGAAGACTCCATTTGTACATACAATCATCTCTGCTGGGGTCATGTACACCCTAACTAGGAACTGCAGTCTAGGAGACTTGGACAATTGTGGATGTGATGACTCTCAGAATGGCCATTTGggtgagcaggaatgggtatagactggtgtgtgacaagaaagagaaagtagg Alignment from Spaln_aa2Genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG ggaaattatagggcaatggatagaggcatgtcttccttcctgccatgcagCTAACCAGAAGACTCCATTTGTACATACAATCATCTCTGCTGGGGTCATGTACACCCTAACTAGGAACTGCAGTCTAGGAGACTTGGACAATTGTGGATGTGATGACTCTCAGAATGGCCATTTGGgtgagcaggaatgggtatagactggtgtgtgacaagaaagagaaagtagg Alignment from Spaln_nt2Genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG ggaaattatagggcaatggatagaggcatgtcttccttcctgccatgcagCTAACCAGAAGACTCCATTTGTACATACAATCATCTCTGCTGGGGTCATGTACACCCTAACTAGGAACTGCAGTCTAGGAGACTTGGACAATTGTGGATGTGATGACTCTCAGAATGGCCATTTGGgtgagcaggaatgggtatagactggtgtgtgacaagaaagagaaagtagg Alignment from Pairagon CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG ggaaattatagggcaatggatagaggcatgtcttccttcctgccatgcagCTAACCAGAAGACTCCATTTGTACATACAATCATCTCTGCTGGGGTCATGTACACCCTAACTAGGAACTGCAGTCTAGGAGACTTGGACAATTGTGGATGTGATGACTCTCAGAATGGCCATTTGGgtgagcaggaatgggtatagactggtgtgtgacaagaaagagaaagtagg Alignment from Exonerate_protein2genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG ggaaattatagggcaatggatagaggcatgtcttccttcctgccatgcagCTAACCAGAAGACTCCATTTGTACATACAATCATCTCTGCTGGGGTCATGTACACCCTAACTAGGAACTGCAGTCTAGGAGACTTGGACAATTGTGGATGTGATGACTCTCAGAATGGCCATTTGGgtgagcaggaatgggtatagactggtgtgtgacaagaaagagaaagtagg Alignment from Exonerate_coding2genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG ggaaattatagggcaatggatagaggcatgtcttccttcctgccatgcagCTAACCAGAAGACTCCATTTGTACATACAATCATCTCTGCTGGGGTCATGTACACCCTAACTAGGAACTGCAGTCTAGGAGACTTGGACAATTGTGGATGTGATGACTCTCAGAATGGCCATTTGGgtgagcaggaatgggtatagactggtgtgtgacaagaaagagaaagtagg Alignment from GeneWise CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG ggaaattatagggcaatggatagaggcatgtcttccttcctgccatgcagCTAACCAGAAGACTCCATTTGTACATACAATCATCTCTGCTGGGGTCATGTACACCCTAACTAGGAACTGCAGTCTAGGAGACTTGGACAATTGTGGATGTGATGACTCTCAGAATGGCCATTTGGgtgagcaggaatgggtatagactggtgtgtgacaagaaagagaaagtagg #### Xpnpep1_ID11146_10 --> 0 - 0 Original Alignment ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG agacctccaagcacctagtgtgacatacttttcattcccctgctccccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtgggcgctgaactgaatttgattgcagatcaaatttccagtctcactga Alignment from CESAR ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG agacctccaagcacctagtgtgacatacttttcattcccctgctccccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtgggcgctgaactgaatttgattgcagatcaaatttccagtctcactga Alignment from Spaln_aa2Genome ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG agacctccaagcacctagtgtgacatacttttcattcccctgctccccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtgggcgctgaactgaatttgattgcagatcaaatttccagtctcactga Alignment from Spaln_nt2Genome ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG agacctccaagcacctagtgtgacatacttttcattcccctgctccccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtgggcgctgaactgaatttgattgcagatcaaatttccagtctcactga Alignment from Pairagon ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG agacctccaagcacctagtgtgacatacttttcattcccctgctccccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtgggcgctgaactgaatttgattgcagatcaaatttccagtctcactga Alignment from Exonerate_protein2genome ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG agacctccaagcacctagtgtgacatacttttcattcccctgctccccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtgggcgctgaactgaatttgattgcagatcaaatttccagtctcactga Alignment from Exonerate_coding2genome ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAGGTT---CCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGA agacctccaagcacctagtgtgacatacttttcattcccctgctccccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGGTGGGCGCTGAACTGAATTTGATTGCAGATCAAATTTCCAGTCTCACTGA Alignment from GeneWise ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG agacctccaagcacctagtgtgacatacttttcattcccctgctccccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtgggcgctgaactgaatttgattgcagatcaaatttccagtctcactga #### Xpnpep1_ID11150_6 --> 2 - 1 Original Alignment gcATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAt tgttgttggttgggagtgttgttgaaagctttttttttttttaatggcaggcATCTCATGGAAGGAGAAGGTTGCAGACCTCCAACTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCtgtaggcatcccagtatccttactgtagtacttgtgcagcttgccggtgca Alignment from CESAR gcATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAt tgttgttggttgggagtgttgttgaaagctttttttttttttaatggcaggcATCTCATGGAAGGAGAAGGTTGCAGACCTCCAACTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCtgtaggcatcccagtatccttactgtagtacttgtgcagcttgccggtgca Alignment from Spaln_aa2Genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT tgttgttggttgggagtgttgttgaaagctttttttttttttaatggcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAACTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtaggcatcccagtatccttactgtagtacttgtgcagcttgccggtgca Alignment from Spaln_nt2Genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT tgttgttggttgggagtgttgttgaaagctttttttttttttaatggcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAACTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtaggcatcccagtatccttactgtagtacttgtgcagcttgccggtgca Alignment from Pairagon GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT tgttgttggttgggagtgttgttgaaagctttttttttttttaatggcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAACTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtaggcatcccagtatccttactgtagtacttgtgcagcttgccggtgca Alignment from Exonerate_protein2genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT tgttgttggttgggagtgttgttgaaagctttttttttttttaatggcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAACTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtaggcatcccagtatccttactgtagtacttgtgcagcttgccggtgca Alignment from Exonerate_coding2genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT tgttgttggttgggagtgttgttgaaagctttttttttttttaatggcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAACTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtaggcatcccagtatccttactgtagtacttgtgcagcttgccggtgca Alignment from GeneWise GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT tgttgttggttgggagtgttgttgaaagctttttttttttttaatggcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAACTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtaggcatcccagtatccttactgtagtacttgtgcagcttgccggtgca #### Xpnpep1_ID11152_5 --> 2 - 1 Original Alignment atTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAg agcacttgtggaatgagtcaatctatgggagtctgactctgtgttttcagacTACTGGAAGAGAATAGCAAAAGTCTTGCGAAGT---GGTCATCACCTCGTCCCTGTGAGGGACAACCTTGTAGACAAAATTTGGACAGACCGGCCAGAATATCCATGCAAACCCCTACTCATTTTGGGATTGGATTATACAggtgagcattaaacactataaaagatccctatatacattctatgtgagtaa Alignment from CESAR atTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAg agcacttgtggaatgagtcaatctatgggagtctgactctgtgttttcagacTACTGGAAGAGAATAGCAAAAGTCTTGCGAAGT---GGTCATCACCTCGTCCCTGTGAGGGACAACCTTGTAGACAAAATTTGGACAGACCGGCCAGAATATCCATGCAAACCCCTACTCATTTTGGGATTGGATTATACAggtgagcattaaacactataaaagatccctatatacattctatgtgagtaa Alignment from Spaln_aa2Genome ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG agcacttgtggaatgagtcaatctatgggagtctgactctgtgttttcagACTACTGGAAGAGAATAGCAAAAGTCTTGCGAAGT---GGTCATCACCTCGTCCCTGTGAGGGACAACCTTGTAGACAAAATTTGGACAGACCGGCCAGAATATCCATGCAAACCCCTACTCATTTTGGGATTGGATTATACAGgtgagcattaaacactataaaagatccctatatacattctatgtgagtaa Alignment from Spaln_nt2Genome ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG agcacttgtggaatgagtcaatctatgggagtctgactctgtgttttcagACTACTGGAAGAGAATAGCAAAAGTCTTGCGAAG---TGGTCATCACCTCGTCCCTGTGAGGGACAACCTTGTAGACAAAATTTGGACAGACCGGCCAGAATATCCATGCAAACCCCTACTCATTTTGGGATTGGATTATACAGgtgagcattaaacactataaaagatccctatatacattctatgtgagtaa Alignment from Pairagon ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG agcacttgtggaatgagtcaatctatgggagtctgactctgtgttttcagACTACTGGAAGAGAATAGCAAAAGTCTTGCGAAG---TGGTCATCACCTCGTCCCTGTGAGGGACAACCTTGTAGACAAAATTTGGACAGACCGGCCAGAATATCCATGCAAACCCCTACTCATTTTGGGATTGGATTATACAGgtgagcattaaacactataaaagatccctatatacattctatgtgagtaa Alignment from Exonerate_protein2genome ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG agcacttgtggaatgagtcaatctatgggagtctgactctgtgttttcagACTACTGGAAGAGAATAGCAAAAGTCTTGCGAAGT---GGTCATCACCTCGTCCCTGTGAGGGACAACCTTGTAGACAAAATTTGGACAGACCGGCCAGAATATCCATGCAAACCCCTACTCATTTTGGGATTGGATTATACAGgtgagcattaaacactataaaagatccctatatacattctatgtgagtaa Alignment from Exonerate_coding2genome ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG agcacttgtggaatgagtcaatctatgggagtctgactctgtgttttcagACTACTGGAAGAGAATAGCAAAAGTCTTGCGAAGT---GGTCATCACCTCGTCCCTGTGAGGGACAACCTTGTAGACAAAATTTGGACAGACCGGCCAGAATATCCATGCAAACCCCTACTCATTTTGGGATTGGATTATACAGgtgagcattaaacactataaaagatccctatatacattctatgtgagtaa Alignment from GeneWise ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG agcacttgtggaatgagtcaatctatgggagtctgactctgtgttttcagACTACTGGAAGAGAATAGCAAAAGTCTTGCGAAGT---GGTCATCACCTCGTCCCTGTGAGGGACAACCTTGTAGACAAAATTTGGACAGACCGGCCAGAATATCCATGCAAACCCCTACTCATTTTGGGATTGGATTATACAGgtgagcattaaacactataaaagatccctatatacattctatgtgagtaa #### Yif1a_ID835_7 --> 1 - 0 Original Alignment gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttacacaatctttgattcattccttcagctcccgtctctttcctctccagcATGAATTTGAGTGTACTTACAGCACTACTTTTTGGAAGTGATAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTATTTCATTgtaagtgttggatagttccatcctcccttccatgaatgtctttatttcat Alignment from CESAR gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttacacaatctttgattcattccttcagctcccgtctctttcctctccagcATGAATTTGAGTGTACTTACAGCACTACTTTTTGGAAGTGATAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTATTTCATTgtaagtgttggatagttccatcctcccttccatgattttttgccttcctc Alignment from Spaln_aa2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttacacaatctttgattcattccttcagctcccgtctctttcctctccagCATGAATTTGAGTGTACTTACAGCACTACTTTTTGGAAGTGATAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTATTTCATTgtaagtgttggatagttccatcctcccttccatgaatgtctttatttcat Alignment from Spaln_nt2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttacacaatctttgattcattccttcagctcccgtctctttcctctccagCATGAATTTGAGTGTACTTACAGCACTACTTTTTGGAAGTGATAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTATTTCATTgtaagtgttggatagttccatcctcccttccatgaatgtctttatttcat Alignment from Pairagon GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATTGT------------------------------------------------ ttacacaatctttgattcattccttcagctcccgtctctttcctctccagCATGAATTTGAGTGTACTTACAGCACTACTTTTTGGAAGTGATAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTATTTCATTGTAAGTGTTGGATAGTTCCATCCTCCCTTCCATGAATGTCTTTATTTCAT Alignment from Exonerate_protein2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttacacaatctttgattcattccttcagctcccgtctctttcctctccagCATGAATTTGAGTGTACTTACAGCACTACTTTTTGGAAGTGATAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTATTTCATTgtaagtgttggatagttccatcctcccttccatgaatgtctttatttcat Alignment from Exonerate_coding2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTAC ttacacaatctttgattcattccttcagctcccgtctctttcctctccagcatgaatttgagtgtacttacagcactactttttggaagtgataggtattatgtggTCTTGGCCTGGGCTTCATCTCCTCTTATGTATTTCATTGTAAGTGTTGGATAGTTCCATCCTCCCTTCCATGAATGTCTTTATTTCAT Alignment from GeneWise GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttacacaatctttgattcattccttcagctcccgtctctttcctctccagCATGAATTTGAGTGTACTTACAGCACTACTTTTTGGAAGTGATAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTATTTCATTgtaagtgttggatagttccatcctcccttccatgaatgtctttatttcat #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ttggactatggacccctactctgacaaccattcatctctgttctctttagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTTGTTCAATTGTGGCCATTGCGTATCTATGTGTTCTACCGCTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCAGTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAGCATTATCAAGCCATCGCTACTCCTCACAAATATCCACCTCAGgtgagcgccccacagtgcaagtttcactaaagacaatgctttcttgctgg Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ttggactatggacccctactctgacaaccattcatctctgttctctttagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTTGTTCAATTGTGGCCATTGCGTATCTATGTGTTCTACCGCTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCAGTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAGCATTATCAAGCCATCGCTACTCCTCACAAATATCCACCTCAGgtgagcgccccacagtgcaagtttcactaaagacaatgctttcttgctgg Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ttggactatggacccctactctgacaaccattcatctctgttctctttagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTTGTTCAATTGTGGCCATTGCGTATCTATGTGTTCTACCGCTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCAGTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAGCATTATCAAGCCATCGCTACTCCTCACAAATATCCACCTCAGgtgagcgccccacagtgcaagtttcactaaagacaatgctttcttgctgg Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ttggactatggacccctactctgacaaccattcatctctgttctctttagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTTGTTCAATTGTGGCCATTGCGTATCTATGTGTTCTACCGCTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCAGTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAGCATTATCAAGCCATCGCTACTCCTCACAAATATCCACCTCAGgtgagcgccccacagtgcaagtttcactaaagacaatgctttcttgctgg Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ttggactatggacccctactctgacaaccattcatctctgttctctttagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTTGTTCAATTGTGGCCATTGCGTATCTATGTGTTCTACCGCTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCAGTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAGCATTATCAAGCCATCGCTACTCCTCACAAATATCCACCTCAGgtgagcgccccacagtgcaagtttcactaaagacaatgctttcttgctgg Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ttggactatggacccctactctgacaaccattcatctctgttctctttagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTTGTTCAATTGTGGCCATTGCGTATCTATGTGTTCTACCGCTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCAGTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAGCATTATCAAGCCATCGCTACTCCTCACAAATATCCACCTCAGgtgagcgccccacagtgcaagtttcactaaagacaatgctttcttgctgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ttggactatggacccctactctgacaaccattcatctctgttctctttagGTGTTTGTAGTGCTAGTGATTGTGCTGCCTTGTTCAATTGTGGCCATTGCGTATCTATGTGTTCTACCGCTACTCCTTCGAACTTACTCAGTACCCCAACTCTGCTGGCAGTTTCTTTATAGCCACTGGAATCTCATTCTCATTGTCTCCCAGCATTATCAAGCCATCGCTACTCCTCACAAATATCCACCTCAGgtgagcgccccacagtgcaagtttcactaaagacaatgctttcttgctgg #### Zdhhc16_ID8351_8 --> 0 - 2 Original Alignment GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAag gagggggctctcaaagtcaaggagccttgtgtttgagacagctctcccagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTGTTATTAGGTATAGACACAGGAaggtgggtacagactctgcaaggcatggttaacagttctagaaggttggcct Alignment from CESAR GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAag gagggggctctcaaagtcaaggagccttgtgtttgagacagctctcccagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTGTTATTAGGTATAGACACAGGAaggtgggtacagactctgcaaggcatggttaacagttctagaaggttggcct Alignment from Spaln_aa2Genome GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG gagggggctctcaaagtcaaggagccttgtgtttgagacagctctcccagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTGTTATTAGGTATAGACACAGGAAGgtgggtacagactctgcaaggcatggttaacagttctagaaggttggcct Alignment from Spaln_nt2Genome GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG gagggggctctcaaagtcaaggagccttgtgtttgagacagctctcccagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTGTTATTAGGTATAGACACAGGAAGgtgggtacagactctgcaaggcatggttaacagttctagaaggttggcct Alignment from Pairagon GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG gagggggctctcaaagtcaaggagccttgtgtttgagacagctctcccagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTGTTATTAGGTATAGACACAGGAAGgtgggtacagactctgcaaggcatggttaacagttctagaaggttggcct Alignment from Exonerate_protein2genome GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG gagggggctctcaaagtcaaggagccttgtgtttgagacagctctcccagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTGTTATTAGGTATAGACACAGGAAGgtgggtacagactctgcaaggcatggttaacagttctagaaggttggcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG gagggggctctcaaagtcaaggagccttgtgtttgagacagctctcccagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTGTTATTAGGTATAGACACAGGAAGgtgggtacagactctgcaaggcatggttaacagttctagaaggttggcct #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg gggatgtcaaaggggcaccacagtgcagtgcgactgttttctcttctcagGTTCACTACAAGTTTATAGAGGAGTACAACAGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGTCCATGTACA---GGGCCCCGAGTCCAACTGCAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGaggttagaggagggggttctttatctgtaaactaaaagccagttggctttct Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg gggatgtcaaaggggcaccacagtgcagtgcgactgttttctcttctcagGTTCACTACAAGTTTATAGAGGAGTACAACAGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGTCCATGTACA---GGGCCCCGAGTCCAACTGCAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGaggttagaggagggggttctttatctgtaaactaaaaccaatgcctctgttt Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG gggatgtcaaaggggcaccacagtgcagtgcgactgttttctcttctcagGTTCACTACAAGTTTATAGAGGAGTACAACAGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGTCCATGTACA---GGGCCCCGAGTCCAACTGCAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgttagaggagggggttctttatctgtaaactaaaagccagttggctttct Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG gggatgtcaaaggggcaccacagtgcagtgcgactgttttctcttctcagGTTCACTACAAGTTTATAGAGGAGTACAACAGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGTCCATGTAC--AGG-GCCCCGAGTCCAACTGCAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgttagaggagggggttctttatctgtaaactaaaagccagttggctttct Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG gggatgtcaaaggggcaccacagtgcagtgcgactgttttctcttctcagGTTCACTACAAGTTTATAGAGGAGTACAACAGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGTCCATGTAC---AGGGCCCCGAGTCCAACTGCAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgttagaggagggggttctttatctgtaaactaaaagccagttggctttct Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG gggatgtcaaaggggcaccacagtgcagtgcgactgttttctcttctcagGTTCACTACAAGTTTATAGAGGAGTACAACAGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGTCCATGTACA---GGGCCCCGAGTCCAACTGCAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgttagaggagggggttctttatctgtaaactaaaagccagttggctttct Alignment from Exonerate_coding2genome AGAAGTGTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG gggatgtcaaaggggcaccacagtgcagtgcgactgttttctcttctcagGT------TCACTACAAGTTTATAGAGGAGTACAACAGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGTCCATGTAC---AGGGCCCCGAGTCCAACTGCAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgttagaggagggggttctttatctgtaaactaaaagccagttggctttct Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG gggatgtcaaaggggcaccacagtgcagtgcgactgttttctcttctcagGTTCACTACAAGTTTATAGAGGAGTACAACAGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGTCCATGTACAGGG---CCCCGAGTCCAACTGCAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgttagaggagggggttctttatctgtaaactaaaagccagttggctttct #### Zdhhc6_ID11626_3 --> 1 - 0 Original Alignment aTGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG caaatgcctgagcaagtattacatgattaacttccgattctgtcttttaggTGTGTAATGAAAATGGACCACCACTGTCCATGGATCAACAACTGTTGTGGCCACCAAAACCATGCATCCTTCACACTTTTCCTACTACTGGCCCCTTTGGGCTGTACTCACGCTGCTTTCATCTTTGTGATGACCATGTACACACAGCTGTACAATCGGgtgagcactcttcaagagttgtcttggacagtgtcccttcagtatgccct Alignment from CESAR aTGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG caaatgcctgagcaagtattacatgattaacttccgattctgtcttttaggTGTGTAATGAAAATGGACCACCACTGTCCATGGATCAACAACTGTTGTGGCCACCAAAACCATGCATCCTTCACACTTTTCCTACTACTGGCCCCTTTGGGCTGTACTCACGCTGCTTTCATCTTTGTGATGACCATGTACACACAGCTGTACAATCGGgtgagcactcttcaagagttgtcttggacagtgtcccttcagtatgccct Alignment from Spaln_aa2Genome ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG caaatgcctgagcaagtattacatgattaacttccgattctgtcttttagGTGTGTAATGAAAATGGACCACCACTGTCCATGGATCAACAACTGTTGTGGCCACCAAAACCATGCATCCTTCACACTTTTCCTACTACTGGCCCCTTTGGGCTGTACTCACGCTGCTTTCATCTTTGTGATGACCATGTACACACAGCTGTACAATCGGgtgagcactcttcaagagttgtcttggacagtgtcccttcagtatgccct Alignment from Spaln_nt2Genome ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG caaatgcctgagcaagtattacatgattaacttccgattctgtcttttagGTGTGTAATGAAAATGGACCACCACTGTCCATGGATCAACAACTGTTGTGGCCACCAAAACCATGCATCCTTCACACTTTTCCTACTACTGGCCCCTTTGGGCTGTACTCACGCTGCTTTCATCTTTGTGATGACCATGTACACACAGCTGTACAATCGGgtgagcactcttcaagagttgtcttggacagtgtcccttcagtatgccct Alignment from Pairagon ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG caaatgcctgagcaagtattacatgattaacttccgattctgtcttttagGTGTGTAATGAAAATGGACCACCACTGTCCATGGATCAACAACTGTTGTGGCCACCAAAACCATGCATCCTTCACACTTTTCCTACTACTGGCCCCTTTGGGCTGTACTCACGCTGCTTTCATCTTTGTGATGACCATGTACACACAGCTGTACAATCGGgtgagcactcttcaagagttgtcttggacagtgtcccttcagtatgccct Alignment from Exonerate_protein2genome ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG caaatgcctgagcaagtattacatgattaacttccgattctgtcttttagGTGTGTAATGAAAATGGACCACCACTGTCCATGGATCAACAACTGTTGTGGCCACCAAAACCATGCATCCTTCACACTTTTCCTACTACTGGCCCCTTTGGGCTGTACTCACGCTGCTTTCATCTTTGTGATGACCATGTACACACAGCTGTACAATCGGgtgagcactcttcaagagttgtcttggacagtgtcccttcagtatgccct Alignment from Exonerate_coding2genome ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG caaatgcctgagcaagtattacatgattaacttccgattctgtcttttagGTGTGTAATGAAAATGGACCACCACTGTCCATGGATCAACAACTGTTGTGGCCACCAAAACCATGCATCCTTCACACTTTTCCTACTACTGGCCCCTTTGGGCTGTACTCACGCTGCTTTCATCTTTGTGATGACCATGTACACACAGCTGTACAATCGGgtgagcactcttcaagagttgtcttggacagtgtcccttcagtatgccct Alignment from GeneWise ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG caaatgcctgagcaagtattacatgattaacttccgattctgtcttttagGTGTGTAATGAAAATGGACCACCACTGTCCATGGATCAACAACTGTTGTGGCCACCAAAACCATGCATCCTTCACACTTTTCCTACTACTGGCCCCTTTGGGCTGTACTCACGCTGCTTTCATCTTTGTGATGACCATGTACACACAGCTGTACAATCGGgtgagcactcttcaagagttgtcttggacagtgtcccttcagtatgccct #### Zfp91_ID3460_6 --> 1 - 2 Original Alignment gGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGaa gctaaggtgtgactaaagacatttgtaggtcacgggctgggatctcccagaGGGACTCCAAAACCACGGAGGAAAACTGGAATGGTCAAGGAAGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAGGTTGATGTGAAAGAAGAAGACAATGAAATTAAGGAAGATGAGGAGCCTCCCAAGaagtgagtgaaaatgatgagcctcccaggaactacaacttactactagtaga Alignment from CESAR gGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGaa gctaaggtgtgactaaagacatttgtaggtcacgggctgggatctcccagaGGGACTCCAAAACCACGGAGGAAAACTGGAATGGTCAAGGAAGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAGGTTGATGTGAAAGAAGAAGACAATGAAATTAAGGAAGATGAGGAGCCTCCCAAGaagtgagtgaaaatgatgagcctcccaggaactacaacttactactagtaga Alignment from Spaln_aa2Genome GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA gctaaggtgtgactaaagacatttgtaggtcacgggctgggatctcccagAGGGACTCCAAAACCACGGAGGAAAACTGGAATGGTCAAGGAAGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAGGTTGATGTGAAAGAAGAAGACAATGAAATTAAGGAAGATGAGGAGCCTCCCAAGAAgtgagtgaaaatgatgagcctcccaggaactacaacttactactagtaga Alignment from Spaln_nt2Genome GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA gctaaggtgtgactaaagacatttgtaggtcacgggctgggatctcccagAGGGACTCCAAAACCACGGAGGAAAACTGGAATGGTCAAGGAAGAAAAGGAAAAGA---AAATTAAAGTGGAAGTTGAGGTTGATGTGAAAGAAGAAGACAATGAAATTAAGGAAGATGAGGAGCCTCCCAAGAAgtgagtgaaaatgatgagcctcccaggaactacaacttactactagtaga Alignment from Pairagon GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA gctaaggtgtgactaaagacatttgtaggtcacgggctgggatctcccagAGGGACTCCAAAACCACGGAGGAAAACTGGAATGGTCAAGGAAGAAAAGGAAAAGA---AAATTAAAGTGGAAGTTGAGGTTGATGTGAAAGAAGAAGACAATGAAATTAAGGAAGATGAGGAGCCTCCCAAGAAgtgagtgaaaatgatgagcctcccaggaactacaacttactactagtaga Alignment from Exonerate_protein2genome GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA gctaaggtgtgactaaagacatttgtaggtcacgggctgggatctcccagAGGGACTCCAAAACCACGGAGGAAAACTGGAATGGTCAAGGAAGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAGGTTGATGTGAAAGAAGAAGACAATGAAATTAAGGAAGATGAGGAGCCTCCCAAGAAgtgagtgaaaatgatgagcctcccaggaactacaacttactactagtaga Alignment from Exonerate_coding2genome GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA gctaaggtgtgactaaagacatttgtaggtcacgggctgggatctcccagAGGGACTCCAAAACCACGGAGGAAAACTGGAATGGTCAAGGAAGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAGGTTGATGTGAAAGAAGAAGACAATGAAATTAAGGAAGATGAGGAGCCTCCCAAGAAgtgagtgaaaatgatgagcctcccaggaactacaacttactactagtaga Alignment from GeneWise --ACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA gctaaggtgtgactaaagacatttgtaggtcacgggctgggatctcccagagGGACTCCAAAACCACGGAGGAAAACTGGAATGGTCAAGGAAGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAGGTTGATGTGAAAGAAGAAGACAATGAAATTAAGGAAGATGAGGAGCCTCCCAAGAAgtgagtgaaaatgatgagcctcccaggaactacaacttactactagtaga #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag atagaagttgaattttgggcagtgaatgatataattattttcttttctagatGTTACTGAAGAGCAACGAACCCCTGGTGGGACCaggtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from CESAR atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag atagaagttgaattttgggcagtgaatgatataattattttcttttctagatGTTACTGAAGAGCAACGAACCCCTGGTGGGACCaggtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaagttgaattttgggcagtgaatgatataattattttcttttctagATGTTACTGAAGAGCAACGAACCCCTGGTGGGACCAGgtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaagttgaattttgggcagtgaatgatataattattttcttttctagATGTTACTGAAGAGCAACGAACCCCTGGTGGGACCAGgtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from Pairagon ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaagttgaattttgggcagtgaatgatataattattttcttttctagATGTTACTGAAGAGCAACGAACCCCTGGTGGGACCAGgtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from Exonerate_protein2genome atagaagttgaattttgggcagtgaatgatataattattttcttttctagatgttactgaagagcaacgaacccctggtgggaccaggtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from Exonerate_coding2genome atagaagttgaattttgggcagtgaatgatataattattttcttttctagatgttactgaagagcaacgaacccctggtgggaccaggtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat Alignment from GeneWise atagaagttgaattttgggcagtgaatgatataattattttcttttctagatgttactgaagagcaacgaacccctggtgggaccaggtgagaagctgcttgcttaacccaatgtttcatattactgagtgttacat #### Zfyve27_ID8422_4 --> 1 - 2 Original Alignment cTTGATCCAACTGGAAGCCTTCTTGGCCCGCCTGTGCTATACCTGCGAGTCAGCCTACCGTGTACTTCACTGGGAGAACCCCGTGGTGTCCTCAca ttagggggggattggacttcaattgccgctttttttttttatcttttcagtTTGACACAACTTGAAGCCTTTCTGGCACGCCTGTGTTATACATGTGAATCTGCTTACCGTGTGCTCCACTGGGAGAATCCTGTGGTGTCCTCAcagtgcgaaatcagatgtcatgagattagctagtgctctttgccaaagtcac Alignment from CESAR cTTGATCCAACTGGAAGCCTTCTTGGCCCGCCTGTGCTATACCTGCGAGTCAGCCTACCGTGTACTTCACTGGGAGAACCCCGTGGTGTCCTCAca ttagggggggattggacttcaattgccgctttttttttttatcttttcagtTTGACACAACTTGAAGCCTTTCTGGCACGCCTGTGTTATACATGTGAATCTGCTTACCGTGTGCTCCACTGGGAGAATCCTGTGGTGTCCTCAcagtgcgaaatcagatgtcatgagattagctagtgctctttgccaaagtcac Alignment from Spaln_aa2Genome CTTGATCCAACTGGAAGCCTTCTTGGCCCGCCTGTGCTATACCTGCGAGTCAGCCTACCGTGTACTTCACTGGGAGAACCCCGTGGTGTCCTCACA ttagggggggattggacttcaattgccgctttttttttttatcttttcagTTTGACACAACTTGAAGCCTTTCTGGCACGCCTGTGTTATACATGTGAATCTGCTTACCGTGTGCTCCACTGGGAGAATCCTGTGGTGTCCTCACAgtgcgaaatcagatgtcatgagattagctagtgctctttgccaaagtcac Alignment from Spaln_nt2Genome CTTGATCCAACTGGAAGCCTTCTTGGCCCGCCTGTGCTATACCTGCGAGTCAGCCTACCGTGTACTTCACTGGGAGAACCCCGTGGTGTCCTCACA ttagggggggattggacttcaattgccgctttttttttttatcttttcagTTTGACACAACTTGAAGCCTTTCTGGCACGCCTGTGTTATACATGTGAATCTGCTTACCGTGTGCTCCACTGGGAGAATCCTGTGGTGTCCTCACAgtgcgaaatcagatgtcatgagattagctagtgctctttgccaaagtcac Alignment from Pairagon CTTGATCCAACTGGAAGCCTTCTTGGCCCGCCTGTGCTATACCTGCGAGTCAGCCTACCGTGTACTTCACTGGGAGAACCCCGTGGTGTCCTCACA ttagggggggattggacttcaattgccgctttttttttttatcttttcagTTTGACACAACTTGAAGCCTTTCTGGCACGCCTGTGTTATACATGTGAATCTGCTTACCGTGTGCTCCACTGGGAGAATCCTGTGGTGTCCTCACAgtgcgaaatcagatgtcatgagattagctagtgctctttgccaaagtcac Alignment from Exonerate_protein2genome CTTGATCCAACTGGAAGCCTTCTTGGCCCGCCTGTGCTATACCTGCGAGTCAGCCTACCGTGTACTTCACTGGGAGAACCCCGTGGTGTCCTCACA ttagggggggattggacttcaattgccgctttttttttttatcttttcagTTTGACACAACTTGAAGCCTTTCTGGCACGCCTGTGTTATACATGTGAATCTGCTTACCGTGTGCTCCACTGGGAGAATCCTGTGGTGTCCTCACAgtgcgaaatcagatgtcatgagattagctagtgctctttgccaaagtcac Alignment from Exonerate_coding2genome CTTGATCCAACTGGAAGCCTTCTTGGCCCGCCTGTGCTATACCTGCGAGTCAGCCTACCGTGTACTTCACTGGGAGAACCCCGTGGTGTCCTCACA ttagggggggattggacttcaattgccgctttttttttttatcttttcagTTTGACACAACTTGAAGCCTTTCTGGCACGCCTGTGTTATACATGTGAATCTGCTTACCGTGTGCTCCACTGGGAGAATCCTGTGGTGTCCTCACAgtgcgaaatcagatgtcatgagattagctagtgctctttgccaaagtcac Alignment from GeneWise CTTGATCCAACTGGAAGCCTTCTTGGCCCGCCTGTGCTATACCTGCGAGTCAGCCTACCGTGTACTTCACTGGGAGAACCCCGTGGTGTCCTCACA ttagggggggattggacttcaattgccgctttttttttttatcttttcagTTTGACACAACTTGAAGCCTTTCTGGCACGCCTGTGTTATACATGTGAATCTGCTTACCGTGTGCTCCACTGGGAGAATCCTGTGGTGTCCTCACAgtgcgaaatcagatgtcatgagattagctagtgctctttgccaaagtcac #### Zfyve27_ID8423_5 --> 1 - 1 Original Alignment gTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAg ccatatctattgtcacaaattacaaaagggctatacatttccccttgcaggTTCTATGATGCTCTACTTGGAATGGTTTGCACACTGTATCTGCTTCCCCTTTGCTGGGTTCTTGCCCTACTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGggtaatgcctgtgctgaggattttcctgggaagcatagaatgaaattacaa Alignment from CESAR gTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAg ccatatctattgtcacaaattacaaaagggctatacatttccccttgcaggTTCTATGATGCTCTACTTGGAATGGTTTGCACACTGTATCTGCTTCCCCTTTGCTGGGTTCTTGCCCTACTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGggtaatgcctgtgctgaggattttcctgggaagcatagaatgaaattacaa Alignment from Spaln_aa2Genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatatctattgtcacaaattacaaaagggctatacatttccccttgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTGTATCTGCTTCCCCTTTGCTGGGTTCTTGCCCTACTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtaatgcctgtgctgaggattttcctgggaagcatagaatgaaattacaa Alignment from Spaln_nt2Genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatatctattgtcacaaattacaaaagggctatacatttccccttgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTGTATCTGCTTCCCCTTTGCTGGGTTCTTGCCCTACTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtaatgcctgtgctgaggattttcctgggaagcatagaatgaaattacaa Alignment from Pairagon GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatatctattgtcacaaattacaaaagggctatacatttccccttgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTGTATCTGCTTCCCCTTTGCTGGGTTCTTGCCCTACTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtaatgcctgtgctgaggattttcctgggaagcatagaatgaaattacaa Alignment from Exonerate_protein2genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatatctattgtcacaaattacaaaagggctatacatttccccttgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTGTATCTGCTTCCCCTTTGCTGGGTTCTTGCCCTACTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtaatgcctgtgctgaggattttcctgggaagcatagaatgaaattacaa Alignment from Exonerate_coding2genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatatctattgtcacaaattacaaaagggctatacatttccccttgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTGTATCTGCTTCCCCTTTGCTGGGTTCTTGCCCTACTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtaatgcctgtgctgaggattttcctgggaagcatagaatgaaattacaa Alignment from GeneWise GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatatctattgtcacaaattacaaaagggctatacatttccccttgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTGTATCTGCTTCCCCTTTGCTGGGTTCTTGCCCTACTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtaatgcctgtgctgaggattttcctgggaagcatagaatgaaattacaa #### Zfyve27_ID8427_9 --> 0 - 1 Original Alignment GAGGATGAAGAGGGCACCCCGTGCCCAGCAGAGGATGAGCTGACCCTGCAGGACAATGGATTCCTCAGCAAGAATGAGGTGCTGCGCAGCAAGGTGTCCCGGCTTACAGAGCGGCTTCGCAAGCGTTACCCAACCAATAACTTCg caggatctgtttagacaaccattataactttctcttgttttactcttcagGAGGATGAAGAGGGCACTCCATGCCCAGCTGAAGATGAACTGACCCTGCAGGACAATGGATTCCTCAGCAAAAATGAGGTGCTGCGCAGCAAGGTGTCCCGACTTACAGAGCGGCTTCGCAAGCGTTACTCAACCAATAACTTTggtgagtccaagcgagtgttagaacacatgaaatgttccagaagtgttgag Alignment from CESAR GAGGATGAAGAGGGCACCCCGTGCCCAGCAGAGGATGAGCTGACCCTGCAGGACAATGGATTCCTCAGCAAGAATGAGGTGCTGCGCAGCAAGGTGTCCCGGCTTACAGAGCGGCTTCGCAAGCGTTACCCAACCAATAACTTCg caggatctgtttagacaaccattataactttctcttgttttactcttcagGAGGATGAAGAGGGCACTCCATGCCCAGCTGAAGATGAACTGACCCTGCAGGACAATGGATTCCTCAGCAAAAATGAGGTGCTGCGCAGCAAGGTGTCCCGACTTACAGAGCGGCTTCGCAAGCGTTACTCAACCAATAACTTTggtgagtccaagcgagtgttagaacacatgaaatgttccagaagtgttgag Alignment from Spaln_aa2Genome GAGGATGAAGAGGGCACCCCGTGCCCAGCAGAGGATGAGCTGACCCTGCAGGACAATGGATTCCTCAGCAAGAATGAGGTGCTGCGCAGCAAGGTGTCCCGGCTTACAGAGCGGCTTCGCAAGCGTTACCCAACCAATAACTTCG caggatctgtttagacaaccattataactttctcttgttttactcttcagGAGGATGAAGAGGGCACTCCATGCCCAGCTGAAGATGAACTGACCCTGCAGGACAATGGATTCCTCAGCAAAAATGAGGTGCTGCGCAGCAAGGTGTCCCGACTTACAGAGCGGCTTCGCAAGCGTTACTCAACCAATAACTTTGgtgagtccaagcgagtgttagaacacatgaaatgttccagaagtgttgag Alignment from Spaln_nt2Genome GAGGATGAAGAGGGCACCCCGTGCCCAGCAGAGGATGAGCTGACCCTGCAGGACAATGGATTCCTCAGCAAGAATGAGGTGCTGCGCAGCAAGGTGTCCCGGCTTACAGAGCGGCTTCGCAAGCGTTACCCAACCAATAACTTCG caggatctgtttagacaaccattataactttctcttgttttactcttcagGAGGATGAAGAGGGCACTCCATGCCCAGCTGAAGATGAACTGACCCTGCAGGACAATGGATTCCTCAGCAAAAATGAGGTGCTGCGCAGCAAGGTGTCCCGACTTACAGAGCGGCTTCGCAAGCGTTACTCAACCAATAACTTTGgtgagtccaagcgagtgttagaacacatgaaatgttccagaagtgttgag Alignment from Pairagon GAGGATGAAGAGGGCACCCCGTGCCCAGCAGAGGATGAGCTGACCCTGCAGGACAATGGATTCCTCAGCAAGAATGAGGTGCTGCGCAGCAAGGTGTCCCGGCTTACAGAGCGGCTTCGCAAGCGTTACCCAACCAATAACTTCG caggatctgtttagacaaccattataactttctcttgttttactcttcagGAGGATGAAGAGGGCACTCCATGCCCAGCTGAAGATGAACTGACCCTGCAGGACAATGGATTCCTCAGCAAAAATGAGGTGCTGCGCAGCAAGGTGTCCCGACTTACAGAGCGGCTTCGCAAGCGTTACTCAACCAATAACTTTGgtgagtccaagcgagtgttagaacacatgaaatgttccagaagtgttgag Alignment from Exonerate_protein2genome GAGGATGAAGAGGGCACCCCGTGCCCAGCAGAGGATGAGCTGACCCTGCAGGACAATGGATTCCTCAGCAAGAATGAGGTGCTGCGCAGCAAGGTGTCCCGGCTTACAGAGCGGCTTCGCAAGCGTTACCCAACCAATAACTTCG caggatctgtttagacaaccattataactttctcttgttttactcttcagGAGGATGAAGAGGGCACTCCATGCCCAGCTGAAGATGAACTGACCCTGCAGGACAATGGATTCCTCAGCAAAAATGAGGTGCTGCGCAGCAAGGTGTCCCGACTTACAGAGCGGCTTCGCAAGCGTTACTCAACCAATAACTTTGgtgagtccaagcgagtgttagaacacatgaaatgttccagaagtgttgag Alignment from Exonerate_coding2genome GAGACCCACCTGGTGGTGCTGGAGGATGAAGAGGGCACCCCGTGCCCAGCAGAGGATGAGCTGACCCTGCAGGACAATGGATTCCTCAGCAAGAATGAGGTGCTGCGCAGCAAGGTGTCCCGGCTTACAGAGCGGCTTCGCAAGCGTTACCCAACCAATAACTTCG caggatctgtttagacaaccattataactTTCTCTTGTTTTACTCTTCAGGAGGATGAAGAGGGCACTCCATGCCCAGCTGAAGATGAACTGACCCTGCAGGACAATGGATTCCTCAGCAAAAATGAGGTGCTGCGCAGCAAGGTGTCCCGACTTACAGAGCGGCTTCGCAAGCGTTACTCAACCAATAACTTTGgtgagtccaagcgagtgttagaacacatgaaatgttccagaagtgttgag Alignment from GeneWise GAGACCCACCTG---------------GTGGTGCTGGAGGATGAAGAGGGCACCCCGTGCCCAGCAGAGGATGAGCTGACCCTGCAGGACAATGGATTCCTCAGCAAGAATGAGGTGCTGCGCAGCAAGGTGTCCCGGCTTACAGAGCGGCTTCGCAAGCGTTACCCAACCAATAACTTCG caggatctgtttagACAACCATTATAACTTTCTCTTGTTTTACTCTTCAGGAGGATGAAGAGGGCACTCCATGCCCAGCTGAAGATGAACTGACCCTGCAGGACAATGGATTCCTCAGCAAAAATGAGGTGCTGCGCAGCAAGGTGTCCCGACTTACAGAGCGGCTTCGCAAGCGTTACTCAACCAATAACTTTGgtgagtccaagcgagtgttagaacacatgaaatgttccagaagtgttgag ####