#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGAC-CTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCCTGGCCC-CAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCCTGGCCCCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCCTGGCCCCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCCTGGCCCCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCCTGGCCCCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCCTGGCCCCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCCTGGCCCCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCCTGGCCCCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC-ACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctaggaAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACCACAGAGA-GGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctaggaAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACCACAGAGAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACCACAGAGAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACCACAGAGAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC-ACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACCACAGAGA-GGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACCACAGAGAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACCACAGAGAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACCACAGAGAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAG-CGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtaggTCCAGTGCCCGTGCCAACATCACGCTGTCTGGGAAGAAGCCGCAGAA-ACTCTTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAggtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtaggTCCAGTGCCCGTGCCAACATCACGCTGTCTGGGAAGAAGCCGCAGAAACTCTTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAggtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTGCCAACATCACGCTGTCTGGGAAGAAGCCGCAGAAACTCTTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTGCCAACATCACGCTGTCTGGGAAGAAGCCGCAGAAACTCTTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from Pairagon GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTGCCAACATCACGCTGTCTGGGAAGAAGCCGCAGAAACTCTTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTGCCAACATCACGCTGTCTGGGAAGAAGCCGCAGAAACTCTTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTGCCAACATCACGCTGTCTGGGAAGAAGCCGCAGAAACTCTTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggtcgacagagtgagaccttttcttatttttcttatccatccttgtagGTCCAGTGCCCGTGCCAACATCACGCTGTCTGGGAAGAAGCCGCAGAAACTCTTGCAGCAGATCCGACTCGCCCAGAAAGAAAAAGCAGCCATGGAAGgtacgccttgggcacagaggctacacaacaataagtctggatcttccctg #### 2700081O15Rik_ID2154_4 --> 2 - 1 Original Alignment acGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAG-GAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGg tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagacGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGCGAGGGCG-GGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGggtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from CESAR acGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGg tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagacGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGCGAGGGCGGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGggtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Spaln_aa2Genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGCGAGGGCGGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Spaln_nt2Genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGCGAGGGCGGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Pairagon ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAG-GAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGCGAGGGCG-GGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Exonerate_protein2genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGCGAGGGCGGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Exonerate_coding2genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGCGAGGGCGGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from GeneWise ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGCGAGGGCGGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACA-AAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAG-ACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAG-AGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCA-GCATATGACCAAAATCTTGGACCCTGACCCAggtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAggtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAG-AGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCA-GCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from GeneWise TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcaggtCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACCTTTT-GGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcaggtCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACCTTTTGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACCTTTTGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACCTTTTGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACCTTTTGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACCTTTTGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACCTTTTGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACCTTTTGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGGATGATGGAGCCCGACGAC-TTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGATGATGGAGCCCGACGACCTTCCGAGCTT-TCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from CESAR AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGATGATGGAGCCCGACGACCTTCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_aa2Genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGATGATGGAGCCCGACGACCTTCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_nt2Genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGATGATGGAGCCCGACGACCTTCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Pairagon AAGCGGAATGGGATGATGGAGCCCGACGA-CTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGATGATGGAGCCCGACGACCTTCCGAGCTT-TCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_protein2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGATGATGGAGCCCGACGACCTTCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_coding2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGATGATGGAGCCCGACGACCTTCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from GeneWise AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGATGATGGAGCCCGACGACCTTCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAG-ATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAA-ATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAAATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAAATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAAATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAG-ATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAA-ATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAAATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAAATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGAAGCATTTGCCAAAATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTG-GATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACTGGTTGCGATGGGG-TATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACTGGTTGCGATGGGGTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACTGGTTGCGATGGGGTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACTGGTTGCGATGGGGTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTG-GATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACTGGTTGCGATGGGG-TATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACTGGTTGCGATGGGGTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACTGGTTGCGATGGGGTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACTGGTTGCGATGGGGTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa #### Actn3_ID697_13 --> 1 - 0 Original Alignment tGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGT-GACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ccaccagggtctaactctacactctacagactcccacactgtctctgcagtGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTCGACCAGT-GGATAACTTAGGTACACTGACCCAGAAGAGGAGAGACGCACTAGAGgtgagaaggagggccagggagccaagggcaaggagataaggccagcaggc Alignment from CESAR tGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ccaccagggtctaactctacactctacagactcccacactgtctctgcagtGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTCGACCAGTGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGACGCACTAGAGgtgagaaggagggccagggagccaagggcaaggagataaggccagcaggc Alignment from Spaln_aa2Genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ccaccagggtctaactctacactctacagactcccacactgtctctgcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTCGACCAGTGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGACGCACTAGAGgtgagaaggagggccagggagccaagggcaaggagataaggccagcaggc Alignment from Spaln_nt2Genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ccaccagggtctaactctacactctacagactcccacactgtctctgcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTCGACCAGTGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGACGCACTAGAGgtgagaaggagggccagggagccaagggcaaggagataaggccagcaggc Alignment from Pairagon TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGT-GACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ccaccagggtctaactctacactctacagactcccacactgtctctgcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTCGACCAGT-GGATAACTTAGGTACACTGACCCAGAAGAGGAGAGACGCACTAGAGgtgagaaggagggccagggagccaagggcaaggagataaggccagcaggc Alignment from Exonerate_protein2genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ccaccagggtctaactctacactctacagactcccacactgtctctgcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTCGACCAGTGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGACGCACTAGAGgtgagaaggagggccagggagccaagggcaaggagataaggccagcaggc Alignment from Exonerate_coding2genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ccaccagggtctaactctacactctacagactcccacactgtctctgcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTCGACCAGTGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGACGCACTAGAGgtgagaaggagggccagggagccaagggcaaggagataaggccagcaggc Alignment from GeneWise TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ccaccagggtctaactctacactctacagactcccacactgtctctgcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTCGACCAGTGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGACGCACTAGAGgtgagaaggagggccagggagccaagggcaaggagataaggccagcaggc #### Actn3_ID704_6 --> 1 - 0 Original Alignment cTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATC-CACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagcTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCCACCGTCACC-GCCAGACCTCATTGACTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from CESAR cTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagcTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCCACCGTCACCGCCAGACCTCATTGACTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Spaln_aa2Genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCCACCGTCACCGCCAGACCTCATTGACTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Spaln_nt2Genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCCACCGTCACCGCCAGACCTCATTGACTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Pairagon CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCAT-CCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCCACCGTCACC-GCCAGACCTCATTGACTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Exonerate_protein2genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCCACCGTCACCGCCAGACCTCATTGACTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Exonerate_coding2genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCCACCGTCACCGCCAGACCTCATTGACTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from GeneWise CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCCACCGTCACCGCCAGACCTCATTGACTATGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATC-TGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagaaATTGTTGACGGGAACCTGAAAATGACCCTGGGCATGATCCTGGACCATCA-CCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAggtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagaaATTGTTGACGGGAACCTGAAAATGACCCTGGGCATGATCCTGGACCATCACCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAggtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCCTGGGCATGATCCTGGACCATCACCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCCTGGGCATGATCCTGGACCATCACCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGAT-CTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCCTGGGCATGATCCTGGACCATCA-CCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCCTGGGCATGATCCTGGACCATCACCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCCTGGGCATGATCCTGGACCATCACCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatgatcaatctcatgtgtttcagAAATTGTTGACGGGAACCTGAAAATGACCCTGGGCATGATCCTGGACCATCACCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaggttgaggaggagtacatagagagggccagctcagactctttcccac #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAA-GGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg ccgggctcccactcatgacctttgaccctgaacacaatctcctcctataggaGAGAGGCTGCCTAGGCCTGACAAACGGCAAGA-GTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAggtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg ccgggctcccactcatgacctttgaccctgaacacaatctcctcctataggaGAGAGGCTGCCTAGGCCTGACAAACGGCAAGAGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAggtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGAGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGAGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAA-GGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGA-GTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGAGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGAGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAACGGCAAGAGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt #### Actr1a_ID9870_10 --> 0 - 2 Original Alignment ATATCTGCACCCCAG-GAGAGACTGTATTCCACATGGATTgg gatatctgcaccccaggagagactgtatttcttttcttttcctcttgcagATATCTGCACCCCAGCGAGA-ACTGTATTCCACATGGATTgggtgagaagcccatgtaataggagcaggatgggaagcaagcttttgatcat Alignment from CESAR ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTgg gatatctgcaccccaggagagactgtatttcttttcttttcctcttgcagATATCTGCACCCCAGCGAGAACTGTATTCCACATGGATTgggtgagaagcccatgtaataggagcaggatgggaagcaagcttttgatcat Alignment from Spaln_aa2Genome ATATCTGCACCCCAGGAGAGACT gATATCTGCACCCCAGGAGAGACTgtatttcttttcttttcctcttgcagatatctgcaccccagcgagaactgtattccacatggattgggtgagaagcccatgtaataggagcaggatgggaagcaagcttttgatcat Alignment from Spaln_nt2Genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatctgcaccccaggagagactgtatttcttttcttttcctcttgcagATATCTGCACCCCAGCGAGAACTGTATTCCACATGGATTGGgtgagaagcccatgtaataggagcaggatgggaagcaagcttttgatcat Alignment from Pairagon ATATCTGCACCCCAGGAGAG-------------------------------------------------ACTGTATTCCACATGGATTGG gATATCTGCACCCCAGGAGAGACTGTATTTCTTTTCTTTTCCTCTTGCAGATATCTGCACCCCAGCGAGAACTGTATTCCACATGGATTGGgtgagaagcccatgtaataggagcaggatgggaagcaagcttttgatcat Alignment from Exonerate_protein2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatctgcaccccaggagagactgtatttcttttcttttcctcttgcagATATCTGCACCCCAGCGAGAACTGTATTCCACATGGATTGGgtgagaagcccatgtaataggagcaggatgggaagcaagcttttgatcat Alignment from Exonerate_coding2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatctgcaccccaggagagactgtatttcttttcttttcctcttgcagATATCTGCACCCCAGCGAGAACTGTATTCCACATGGATTGGgtgagaagcccatgtaataggagcaggatgggaagcaagcttttgatcat Alignment from GeneWise ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatctgcaccccaggagagactgtatttcttttcttttcctcttgcagATATCTGCACCCCAGCGAGAACTGTATTCCACATGGATTGGgtgagaagcccatgtaataggagcaggatgggaagcaagcttttgatcat #### Actr1a_ID9871_9 --> 2 - 0 Original Alignment gtTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCA-AAAGACGTGAAGATCAGG catctcttttctactctctcttttttttacttctgtcttgtttggcacaggtTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTTGCTCCGCAAAG-TGTGAAGATCAGGgtcaggtggactggaggttgggcaggtaccggggctccagagtcatggat Alignment from CESAR gtTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG catctcttttctactctctcttttttttacttctgtcttgtttggcacaggtTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTTGCTCCGCAAAGTGTGAAGATCAGGgtcaggtggactggaggttgggcaggtaccggggctccagagtcatggat Alignment from Spaln_aa2Genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG catctcttttctactctctcttttttttacttctgtcttgtttggcacagGTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTTGCTCCGCAAAGTGTGAAGATCAGGgtcaggtggactggaggttgggcaggtaccggggctccagagtcatggat Alignment from Spaln_nt2Genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG catctcttttctactctctcttttttttacttctgtcttgtttggcacagGTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTTGCTCCGCAAAGTGTGAAGATCAGGgtcaggtggactggaggttgggcaggtaccggggctccagagtcatggat Alignment from Pairagon GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG catctcttttctactctctcttttttttacttctgtcttgtttggcacagGTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTTGCTCCGCAAAGTGTGAAGATCAGGgtcaggtggactggaggttgggcaggtaccggggctccagagtcatggat Alignment from Exonerate_protein2genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG catctcttttctactctctcttttttttacttctgtcttgtttggcacagGTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTTGCTCCGCAAAGTGTGAAGATCAGGgtcaggtggactggaggttgggcaggtaccggggctccagagtcatggat Alignment from Exonerate_coding2genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG catctcttttctactctctcttttttttacttctgtcttgtttggcacagGTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTTGCTCCGCAAAGTGTGAAGATCAGGgtcaggtggactggaggttgggcaggtaccggggctccagagtcatggat Alignment from GeneWise GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG catctcttttctactctctcttttttttacttctgtcttgtttggcacagGTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTTGCTCCGCAAAGTGTGAAGATCAGGgtcaggtggactggaggttgggcaggtaccggggctccagagtcatggat #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTC-ATCGAGCTCTTCAACCAAg atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaaggtCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCCATTG-GCTCTTCAACCAAggtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from CESAR gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaaggtCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCCATTGGCTCTTCAACCAAggtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCCATTGGCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCCATTGGCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from Pairagon GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCCATTGGCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCCATTGGCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCCATTGGCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCCATTGGCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGTGACCAGGAACTGTAC-CGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg ctggcacccttgatctcctcatatatccttcagctcccatatctccacagTTACTGGACAGTGACCAGGAACTGTACCCGCAACT-CCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCATGAGGAGggtgagaacttaccacctgctttacactgcaggagtgaaaagcaggttctg Alignment from CESAR TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg ctggcacccttgatctcctcatatatccttcagctcccatatctccacagTTACTGGACAGTGACCAGGAACTGTACCCGCAACTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCATGAGGAGggtgagaacttaccacctgctttacactgcaggagtgaaaagcaggttctg Alignment from Spaln_aa2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccttgatctcctcatatatccttcagctcccatatctccacagTTACTGGACAGTGACCAGGAACTGTACCCGCAACTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCATGAGGAGGgtgagaacttaccacctgctttacactgcaggagtgaaaagcaggttctg Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccttgatctcctcatatatccttcagctcccatatctccacagTTACTGGACAGTGACCAGGAACTGTACCCGCAACTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCATGAGGAGGgtgagaacttaccacctgctttacactgcaggagtgaaaagcaggttctg Alignment from Pairagon TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccttgatctcctcatatatccttcagctcccatatctccacagTTACTGGACAGTGACCAGGAACTGTACCCGCAACTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCATGAGGAGGgtgagaacttaccacctgctttacactgcaggagtgaaaagcaggttctg Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccttgatctcctcatatatccttcagctcccatatctccacagTTACTGGACAGTGACCAGGAACTGTACCCGCAACTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCATGAGGAGGgtgagaacttaccacctgctttacactgcaggagtgaaaagcaggttctg Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccttgatctcctcatatatccttcagctcccatatctccacagTTACTGGACAGTGACCAGGAACTGTACCCGCAACTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCATGAGGAGGgtgagaacttaccacctgctttacactgcaggagtgaaaagcaggttctg Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccttgatctcctcatatatccttcagctcccatatctccacagTTACTGGACAGTGACCAGGAACTGTACCCGCAACTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCATGAGGAGGgtgagaacttaccacctgctttacactgcaggagtgaaaagcaggttctg #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAG-GAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGCGAGGACA-AAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAG-GAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGCGAGGACA-AAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGCGAGGACAAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAA-GGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAACGGTTTGTTGC-GAGGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTgggtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAACGGTTTGTTGCGAGGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTgggtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAACGGTTTGTTGCGAGGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCG---TGG gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAACGGTTTGTTGCGAGGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAA-GGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGG---GCCGTGG gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAACGGTTTGTTGC-GAGGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAACGGTTTGTTGCGAGGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAACGGTTTGTTGCGAGGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gccaggctctcttcctggcttctgttgatgccttcctttttttgttgtagGCTGTAGAGCTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAACGGTTTGTTGCGAGGGACATCAACCGGAGATTAGGCTGTCTGGGCCGCCGTGGgtgagaatcctggcctccccaccatgtgaccatactcagtctttgctggg #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGC-GTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctaggGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCCGTGGCCT-TGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAgggtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from CESAR gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctaggGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCCGTGGCCTTGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAgggtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from Spaln_aa2Genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCCGTGGCCTTGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from Spaln_nt2Genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCCGTGGCCTTGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from Pairagon GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGG-CGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCCGTGGCCT-TGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from Exonerate_protein2genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCCGTGGCCTTGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from Exonerate_coding2genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCCGTGGCCTTGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from GeneWise GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCCGTGGCCTTGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGC-TTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcaggtGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTGAAGCTGACATGCGCCTTCTACGCTG-TGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from CESAR gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcaggtGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTGAAGCTGACATGCGCCTTCTACGCTGTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from Spaln_aa2Genome GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTGAAGCTGACATGCGCCTTCTACGCTGTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from Spaln_nt2Genome GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTGAAGCTGACATGCGCCTTCTACGCTGTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from Pairagon GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCG-CTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTGAAGCTGACATGCGCCTTCTACGCTG-TGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from Exonerate_protein2genome GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTGAAGCTGACATGCGCCTTCTACGCTGTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from Exonerate_coding2genome GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTGAAGCTGACATGCGCCTTCTACGCTGTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from GeneWise GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTGAAGCTGACATGCGCCTTCTACGCTGTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGCTCATATGCAT-CCACACACCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACggtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGCTCATATGCATCCACACACCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACggtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGCTCATATGCATCCACACACCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGCTCATATGCATCCACACACCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGCTCATATGCA-TCCACACACCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGCTCATATGCATCCACACACCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGCTCATATGCATCCACACACCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGCTCATATGCATCCACACACCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGT-GGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTCGGGGGCTTCG-TGAGGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGatgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTCGGGGGCTTCGTGAGGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGatgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTCGGGGGCTTCGTGAGGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from Spaln_nt2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTCGGGGGCTTCGTGAGGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from Pairagon CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTCGGGGGCTTCGTGAGGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from Exonerate_protein2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTCGGGGGCTTCGTGAGGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from Exonerate_coding2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTCGGGGGCTTCGTGAGGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTCGGGGGCTTCGTGAGGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGA-GAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGACGAGATCT-TGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGACGAGATCTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGACGAGATCTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGACGAGATCTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGA-GAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGACGAGATC-TTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGACGAGATCTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGACGAGATCTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGACGAGATCTTGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg #### Afap1l2_ID12248_15 --> 0 - 0 Original Alignment GTGGAGCCTGCCGAGGAAGCCGCCCCT-GCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagccaagggaataagggagtaaacattttattttgtttattttagGTGGAACCGGCTGAGGAAGCCGCCCCTCACTGTCG-TGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACTTGGATCTCACACCAGTCAAGTCCTTCCTGCACAGTAGTAGTGAGGCTCAGGCGCAGGCCTCTCTCCCTGCAGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCAGAGCCAGCCACCACCCAAGAGGAGCCCCACACAGAGTCACCAGGAGACCCTGAGTTGCAGCAGgtaagggccatctgcccagcaactgtaccctgcctcctcaccaggccctg Alignment from CESAR GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagccaagggaataagggagtaaacattttattttgtttattttagGTGGAACCGGCTGAGGAAGCCGCCCCTCACTGTCGTGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACTTGGATCTCACACCAGTCAAGTCCTTCCTGCACAGTAGTAGTGAGGCTCAGGCGCAGGCCTCTCTCCCTGCAGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCAGAGCCAGCCACCACCCAAGAGGAGCCCCACACAGAGTCACCAGGAGACCCTGAGTTGCAGCAGgtaagggccatctgcccagcaactgtaccctgcctcctcaccaggccctg Alignment from Spaln_aa2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagccaagggaataagggagtaaacattttattttgtttattttagGTGGAACCGGCTGAGGAAGCCGCCCCTCACTGTCGTGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACTTGGATCTCACACCAGTCAAGTCCTTCCTGCACAGTAGTAGTGAGGCTCAGGCGCAGGCCTCTCTCCCTGCAGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCAGAGCCAGCCACCACCCAAGAGGAGCCCCACACAGAGTCACCAGGAGACCCTGAGTTGCAGCAGgtaagggccatctgcccagcaactgtaccctgcctcctcaccaggccctg Alignment from Spaln_nt2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagccaagggaataagggagtaaacattttattttgtttattttagGTGGAACCGGCTGAGGAAGCCGCCCCTCACTGTCGTGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACTTGGATCTCACACCAGTCAAGTCCTTCCTGCACAGTAGTAGTGAGGCTCAGGCGCAGGCCTCTCTCCCTGCAGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCAGAGCCAGCCACCACCCAAGAGGAGCCCCACACAGAGTCACCAGGAGACCCTGAGTTGCAGCAGgtaagggccatctgcccagcaactgtaccctgcctcctcaccaggccctg Alignment from Pairagon GTGGAGCCTGCCGAGGAAGCCGCCCCT-GCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagccaagggaataagggagtaaacattttattttgtttattttagGTGGAACCGGCTGAGGAAGCCGCCCCTCACTGTCG-TGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACTTGGATCTCACACCAGTCAAGTCCTTCCTGCACAGTAGTAGTGAGGCTCAGGCGCAGGCCTCTCTCCCTGCAGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCAGAGCCAGCCACCACCCAAGAGGAGCCCCACACAGAGTCACCAGGAGACCCTGAGTTGCAGCAGgtaagggccatctgcccagcaactgtaccctgcctcctcaccaggccctg Alignment from Exonerate_protein2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagccaagggaataagggagtaaacattttattttgtttattttagGTGGAACCGGCTGAGGAAGCCGCCCCTCACTGTCGTGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACTTGGATCTCACACCAGTCAAGTCCTTCCTGCACAGTAGTAGTGAGGCTCAGGCGCAGGCCTCTCTCCCTGCAGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCAGAGCCAGCCACCACCCAAGAGGAGCCCCACACAGAGTCACCAGGAGACCCTGAGTTGCAGCAGgtaagggccatctgcccagcaactgtaccctgcctcctcaccaggccctg Alignment from Exonerate_coding2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagccaagggaataagggagtaaacattttattttgtttattttagGTGGAACCGGCTGAGGAAGCCGCCCCTCACTGTCGTGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACTTGGATCTCACACCAGTCAAGTCCTTCCTGCACAGTAGTAGTGAGGCTCAGGCGCAGGCCTCTCTCCCTGCAGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCAGAGCCAGCCACCACCCAAGAGGAGCCCCACACAGAGTCACCAGGAGACCCTGAGTTGCAGCAGgtaagggccatctgcccagcaactgtaccctgcctcctcaccaggccctg Alignment from GeneWise GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagccaagggaataagggagtaaacattttattttgtttattttagGTGGAACCGGCTGAGGAAGCCGCCCCTCACTGTCGTGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACTTGGATCTCACACCAGTCAAGTCCTTCCTGCACAGTAGTAGTGAGGCTCAGGCGCAGGCCTCTCTCCCTGCAGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCAGAGCCAGCCACCACCCAAGAGGAGCCCCACACAGAGTCACCAGGAGACCCTGAGTTGCAGCAGgtaagggccatctgcccagcaactgtaccctgcctcctcaccaggccctg #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAG-CTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCCTGGTGGCTC-GGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCCTGGTGGCTCGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCCTGGTGGCTCGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCCTGGTGGCTCGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAG-CTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCCTGGTGGCTC-GGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCCTGGTGGCTCGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCCTGGTGGCTCGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCCTGGTGGCTCGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTGCCCCAGTATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccaggaAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCACGAGCTGCTGC-CCAGCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTGCCCCAGTATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccaggaAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCACGAGCTGCTGC-CCAGCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCACGAGCTGCTGCCCAGCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTGCCCCAGTATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCACGAGCTGCTG-CCCAGCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTGCCCCAGTATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCACGAGCTGCTG-CCCAGCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCACGAGCTGCTGCCCAGCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCACGAGCTGCTGCCCAGCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCACGAGCTGCTGCCCAGCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTGATGTTGGGA-GGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGACGGACCCG-GGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAggtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from CESAR AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGACGGACCCGGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAggtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGACGGACCCGGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGACGGACCCGGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Pairagon AGCTGCTTTGCTGTGATGTTGGGA-GGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGACGGACCCG-GGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGACGGACCCGGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGACGGACCCGGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from GeneWise AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGATGTTGGGACGGACCCGGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCC-AACTCCAGTTCTGCCATTTCTGCTTCAg cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagagATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCGGTGTGCGTCCCCCAACTCCAGTT-AGCCATTTCTGCTTCAggtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagagATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCGGTGTGCGTCCCCCAACTCCAGTTAGCCATTTCTGCTTCAggtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCGGTGTGCGTCCCCCAACTCCAGTTAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCGGTGTGCGTCCCCCAACTCCAGTTAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGT-CCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCGGTGTGCGTCCCCCAACTCCAGTTA-GCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from Exonerate_protein2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCGGTGTGCGTCCCCCAACTCCAGTTAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from Exonerate_coding2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCGGTGTGCGTCCCCCAACTCCAGTTAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCGGTGTGCGTCCCCCAACTCCAGTTAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAG-CACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagggGGGAAGACTCCATTCCAGTCCTTCTTGGGCATGGCCCAGCAGCCACT-TTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagggGGGAAGACTCCATTCCAGTCCTTCTTGGGCATGGCCCAGCAGCCACTTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGCATGGCCCAGCAGCCACTTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGCATGGCCCAGCAGCCACTTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGCATGGCCCAGCAGCCACTTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGCATGGCCCAGCAGCCACTTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from Exonerate_coding2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGCATGGCCCAGCAGCCACTTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from GeneWise GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGCATGGCCCAGCAGCCACTTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct #### Ankrd13d_ID465_8 --> 0 - 1 Original Alignment GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCT-GACCAGGACAAGTTAAGGAACAAAg gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTCGACC-GGACAAGTTAAGGAACAAAggtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from CESAR GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAggtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from Spaln_aa2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from Spaln_nt2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from Pairagon GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from Exonerate_protein2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from Exonerate_coding2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from GeneWise GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc #### Ankrd13d_ID468_5 --> 2 - 1 Original Alignment taCCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTG-TGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGg gagtgggccatttggggggagatacccactgtcaccatctcctactgcagtaCCTCTTGTGTCCAAGATGTGCCCAAGCGATGTGTACCGTGTGCTGGAAGCGGG-TGAGAGTCTACGGGTGGACACTAGTCTCTTAGGCTTTGAGCACATGACCTGGCAGCGTGGCCAAAGGAGCTTCATCTTCAGGGGTCAGggtaagctatctgtcacctcagattcccaggtggcttttaagcatgtgtcc Alignment from CESAR taCCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGg gagtgggccatttggggggagatacccactgtcaccatctcctactgcagtaCCTCTTGTGTCCAAGATGTGCCCAAGCGATGTGTACCGTGTGCTGGAAGCGGGTGAGAGTCTACGGGTGGACACTAGTCTCTTAGGCTTTGAGCACATGACCTGGCAGCGTGGCCAAAGGAGCTTCATCTTCAGGGGTCAGggtaagctatctgtcacctcagattcccaggtggcttttaagcatgtgtcc Alignment from Spaln_aa2Genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagtgggccatttggggggagatacccactgtcaccatctcctactgcagTACCTCTTGTGTCCAAGATGTGCCCAAGCGATGTGTACCGTGTGCTGGAAGCGGGTGAGAGTCTACGGGTGGACACTAGTCTCTTAGGCTTTGAGCACATGACCTGGCAGCGTGGCCAAAGGAGCTTCATCTTCAGGGGTCAGGgtaagctatctgtcacctcagattcccaggtggcttttaagcatgtgtcc Alignment from Spaln_nt2Genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagtgggccatttggggggagatacccactgtcaccatctcctactgcagTACCTCTTGTGTCCAAGATGTGCCCAAGCGATGTGTACCGTGTGCTGGAAGCGGGTGAGAGTCTACGGGTGGACACTAGTCTCTTAGGCTTTGAGCACATGACCTGGCAGCGTGGCCAAAGGAGCTTCATCTTCAGGGGTCAGGgtaagctatctgtcacctcagattcccaggtggcttttaagcatgtgtcc Alignment from Pairagon TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTG-TGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagtgggccatttggggggagatacccactgtcaccatctcctactgcagTACCTCTTGTGTCCAAGATGTGCCCAAGCGATGTGTACCGTGTGCTGGAAGC-GGGTGAGAGTCTACGGGTGGACACTAGTCTCTTAGGCTTTGAGCACATGACCTGGCAGCGTGGCCAAAGGAGCTTCATCTTCAGGGGTCAGGgtaagctatctgtcacctcagattcccaggtggcttttaagcatgtgtcc Alignment from Exonerate_protein2genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagtgggccatttggggggagatacccactgtcaccatctcctactgcagTACCTCTTGTGTCCAAGATGTGCCCAAGCGATGTGTACCGTGTGCTGGAAGCGGGTGAGAGTCTACGGGTGGACACTAGTCTCTTAGGCTTTGAGCACATGACCTGGCAGCGTGGCCAAAGGAGCTTCATCTTCAGGGGTCAGGgtaagctatctgtcacctcagattcccaggtggcttttaagcatgtgtcc Alignment from Exonerate_coding2genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagtgggccatttggggggagatacccactgtcaccatctcctactgcagTACCTCTTGTGTCCAAGATGTGCCCAAGCGATGTGTACCGTGTGCTGGAAGCGGGTGAGAGTCTACGGGTGGACACTAGTCTCTTAGGCTTTGAGCACATGACCTGGCAGCGTGGCCAAAGGAGCTTCATCTTCAGGGGTCAGGgtaagctatctgtcacctcagattcccaggtggcttttaagcatgtgtcc Alignment from GeneWise TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gagtgggccatttggggggagatacccactgtcaccatctcctactgcagTACCTCTTGTGTCCAAGATGTGCCCAAGCGATGTGTACCGTGTGCTGGAAGCGGGTGAGAGTCTACGGGTGGACACTAGTCTCTTAGGCTTTGAGCACATGACCTGGCAGCGTGGCCAAAGGAGCTTCATCTTCAGGGGTCAGGgtaagctatctgtcacctcagattcccaggtggcttttaagcatgtgtcc #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGG-CGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCCGAACCC-CCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAggtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCCGAACCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAggtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCCGAACCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCCGAACCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCCGAACCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCCGAACCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Exonerate_coding2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCCGAACCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCCGAACCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt #### Ankrd2_ID8374_8 --> 0 - 0 Original Alignment GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGAC-ATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCAGACCATGA-GGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from CESAR GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCAGACCATGAGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Spaln_aa2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCAGACCATGAGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Spaln_nt2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCAGACCATGAGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Pairagon GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGA-CATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCAGACCATGA-GGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Exonerate_protein2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCAGACCATGAGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Exonerate_coding2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCAGACCATGAGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from GeneWise GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCAGACCATGAGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGT-GGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccacccctctctgtcatttccttcactttttgaagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTCGGCCTGCGAT-CGAAGGTCCTCAGGTACAGGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAGgtaggtggatggagaatggctctgggttgagcagctaactcaactgggaa Alignment from CESAR ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccacccctctctgtcatttccttcactttttgaagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTCGGCCTGCGATCGAAGGTCCTCAGGTACAGGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAGgtaggtggatggagaatggctctgggttgagcagctaactcaactgggaa Alignment from Spaln_aa2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccacccctctctgtcatttccttcactttttgaagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTCGGCCTGCGATCGAAGGTCCTCAGGTACAGGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAGgtaggtggatggagaatggctctgggttgagcagctaactcaactgggaa Alignment from Spaln_nt2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccacccctctctgtcatttccttcactttttgaagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTCGGCCTGCGATCGAAGGTCCTCAGGTACAGGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAGgtaggtggatggagaatggctctgggttgagcagctaactcaactgggaa Alignment from Pairagon ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGT-GGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccacccctctctgtcatttccttcactttttgaagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTCGGCCTGCGA-TCGAAGGTCCTCAGGTACAGGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAGgtaggtggatggagaatggctctgggttgagcagctaactcaactgggaa Alignment from Exonerate_protein2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccacccctctctgtcatttccttcactttttgaagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTCGGCCTGCGATCGAAGGTCCTCAGGTACAGGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAGgtaggtggatggagaatggctctgggttgagcagctaactcaactgggaa Alignment from Exonerate_coding2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccacccctctctgtcatttccttcactttttgaagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTCGGCCTGCGATCGAAGGTCCTCAGGTACAGGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAGgtaggtggatggagaatggctctgggttgagcagctaactcaactgggaa Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gttagtctgcttggaccacccctctctgtcatttccttcactttttgaagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTCGGCCTGCGATCGAAGGTCCTCAGGTACAGGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGCCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAGgtaggtggatggagaatggctctgggttgagcagctaactcaactgggaa #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAG-AGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGCAGTCTCA-TAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from CESAR GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGCAGTCTCATAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Spaln_aa2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGCAGTCTCATAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Spaln_nt2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGCAGTCTCATAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Pairagon GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAG-AGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGCAGTCTCA-TAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Exonerate_protein2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGCAGTCTCATAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Exonerate_coding2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGCAGTCTCATAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from GeneWise GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGCAGTCTCATAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg #### Bbs1_ID728_6 --> 1 - 2 Original Alignment gGAAAAGGCAGACGTG-CCTTTGTCTGTGCAGTCACTCag tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacaggGAAAAGGCAGACGTACCCTT-GTCTGTGCAGTCACTTaggtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from CESAR gGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCag tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacaggGAAAAGGCAGACGTACCCTTGTCTGTGCAGTCACTTaggtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from Spaln_aa2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCCTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from Spaln_nt2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCCTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from Pairagon GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCCTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from Exonerate_protein2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCCTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from Exonerate_coding2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCCTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from GeneWise GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCCTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta #### Bbs1_ID729_5 --> 0 - 2 Original Alignment GACCAGATTGACCCCTTA-ACCCTGAAGGAGATGCTGGAGGACATCag tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGCACCCTGAAAG-GATGCTGGAGGACATCaggtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from CESAR GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCag tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGCACCCTGAAAGGATGCTGGAGGACATCaggtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from Spaln_aa2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGCACCCTGAAAGGATGCTGGAGGACATCAGgtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from Spaln_nt2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGCACCCTGAAAGGATGCTGGAGGACATCAGgtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from Pairagon GACCAGATTGACCCCTTA-ACCCTGAAGGAGATGCTGGAGGACATCAG tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGCACCCTGAAAG-GATGCTGGAGGACATCAGgtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from Exonerate_protein2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGCACCCTGAAAGGATGCTGGAGGACATCAGgtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from Exonerate_coding2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGCACCCTGAAAGGATGCTGGAGGACATCAGgtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from GeneWise GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATC-- tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGCACCCTGAAAGGATGCTGGAGGACATCAGgtattagctcacctttcctcttggtgccccttcatcccaaaactctccta #### Bbs1_ID732_2 --> 1 - 1 Original Alignment cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCC-ATGGCCAACATCCACACCTTCTCCTCCTGCCTGt atttatttcgtcatggggcatattttctctttattaaaatggtatcacagcAATGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCCATGG-CAACATCCACACCTTCTCCTCCTGTCTGtgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from CESAR cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGt atttatttcgtcatggggcatattttctctttattaaaatggtatcacagcAATGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCCATGGCAACATCCACACCTTCTCCTCCTGTCTGtgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from Spaln_aa2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT atttatttcgtcatggggcatattttctctttattaaaatggtatcacagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCCATGGCAACATCCACACCTTCTCCTCCTGTCTGTgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from Spaln_nt2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT atttatttcgtcatggggcatattttctctttattaaaatggtatcacagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCCATGGCAACATCCACACCTTCTCCTCCTGTCTGTgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from Pairagon CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT atttatttcgtcatggggcatattttctctttattaaaatggtatcacagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCCATGGCAACATCCACACCTTCTCCTCCTGTCTGTgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from Exonerate_protein2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT atttatttcgtcatggggcatattttctctttattaaaatggtatcacagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCCATGGCAACATCCACACCTTCTCCTCCTGTCTGTgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from Exonerate_coding2genome GAGAGCAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT atttatttcgtcatggggcatattttctctttattaaaatggtatCACAGCAATGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCCATGGCAACATCCACACCTTCTCCTCCTGTCTGTgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag Alignment from GeneWise AGCAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT atttatttcgtcatggggcatattttctctttattaaaatggtatcacAGCAATGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCCATGGCAACATCCACACCTTCTCCTCCTGTCTGTgtaaaactccatgcatgtctagggacatccagattctaaggggatgggag #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGATAACTCACAC-CACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACTCACACCCACGGGG-CCCGCATCGCATCTCACGCCATCAGCCAggtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACTCACACCCACGGGGCCCGCATCGCATCTCACGCCATCAGCCAggtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACTCACACCCACGGGGCCCGCATCGCATCTCACGCCATCAGCCAGgtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACTCACACCCACGGGGCCCGCATCGCATCTCACGCCATCAGCCAGgtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from Pairagon GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACTCACACCCACGGGGCCCGCATCGCATCTCACGCCATCAGCCAGgtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from Exonerate_protein2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACTCACACCCACGGGGCCCGCATCGCATCTCACGCCATCAGCCAGgtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from Exonerate_coding2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACTCACACCCACGGGGCCCGCATCGCATCTCACGCCATCAGCCAGgtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from GeneWise GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAGGTCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACTCACACCCACGGGGCCCGCATCGCATCTCACGCCATCAGCCAGGTAGGgtggttggttgatagatccttgaagggtaggctggctgggcaaga #### Bscl2_ID2426_9 --> 2 - 1 Original Alignment gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCT-GAAGATCCCTCAGGAACAg gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccaggtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTCGAAG-TCCCTCAGGGACAggtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from CESAR gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccaggtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTCGAAGTCCCTCAGGGACAggtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from Spaln_aa2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTCGAAGTCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from Spaln_nt2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTCGAAGTCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from Pairagon GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTCGAAGTCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from Exonerate_protein2genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTCGAAGTCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from Exonerate_coding2genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTCGAAGTCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from GeneWise GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTCGAAGTCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag #### Btaf1_ID7248_27 --> 0 - 2 Original Alignment GATGGTGTGAACTGGTTAGCC-TTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGag gtgctctgcttacatttacataaatttctccttcttctcactcattgtagGATGGTGTGAACTGGTTAGCCCTTTCTCA-TAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGaggtattgaaaaacaaaattcgaaaatgaaggtcctgaatcctgatcaatgt Alignment from CESAR GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGag gtgctctgcttacatttacataaatttctccttcttctcactcattgtagGATGGTGTGAACTGGTTAGCCCTTTCTCATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGaggtattgaaaaacaaaattcgaaaatgaaggtcctgaatcctgatcaatgt Alignment from Spaln_aa2Genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gtgctctgcttacatttacataaatttctccttcttctcactcattgtagGATGGTGTGAACTGGTTAGCCCTTTCTCATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtattgaaaaacaaaattcgaaaatgaaggtcctgaatcctgatcaatgt Alignment from Spaln_nt2Genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gtgctctgcttacatttacataaatttctccttcttctcactcattgtagGATGGTGTGAACTGGTTAGCCCTTTCTCATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtattgaaaaacaaaattcgaaaatgaaggtcctgaatcctgatcaatgt Alignment from Pairagon GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gtgctctgcttacatttacataaatttctccttcttctcactcattgtagGATGGTGTGAACTGGTTAGCCCTTTCTCATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtattgaaaaacaaaattcgaaaatgaaggtcctgaatcctgatcaatgt Alignment from Exonerate_protein2genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gtgctctgcttacatttacataaatttctccttcttctcactcattgtagGATGGTGTGAACTGGTTAGCCCTTTCTCATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtattgaaaaacaaaattcgaaaatgaaggtcctgaatcctgatcaatgt Alignment from Exonerate_coding2genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gtgctctgcttacatttacataaatttctccttcttctcactcattgtagGATGGTGTGAACTGGTTAGCCCTTTCTCATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtattgaaaaacaaaattcgaaaatgaaggtcctgaatcctgatcaatgt Alignment from GeneWise GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG gtgctctgcttacatttacataaatttctccttcttctcactcattgtagGATGGTGTGAACTGGTTAGCCCTTTCTCATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtattgaaaaacaaaattcgaaaatgaaggtcctgaatcctgatcaatgt #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGG-GCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGCGCAGCCC-CAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGCGCAGCCCCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGCGCAGCCCCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGCGCAGCCCCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGG-GCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGCGCAGCCC-CAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGCGCAGCCCCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGCGCAGCCCCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGCGCAGCCCCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAG-GCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACg attcaggtaaggtggtgtaaaagccatgtccttgtctgctttcttcacagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGGCAGCGCAGCGCCAG-TCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGAGAAATGGACCTCAATGGGGATGGCACCATAGAATTTGATggtagtgaaccctacagacacctcacccctgcctctagtactgtgaagctc Alignment from CESAR TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACg attcaggtaaggtggtgtaaaagccatgtccttgtctgctttcttcacagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGGCAGCGCAGCGCCAGTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGAGAAATGGACCTCAATGGGGATGGCACCATAGAATTTGATggtagtgaaccctacagacacctcacccctgcctctagtactgtgaagctc Alignment from Spaln_aa2Genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACG attcaggtaaggtggtgtaaaagccatgtccttgtctgctttcttcacagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGGCAGCGCAGCGCCAGTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGAGAAATGGACCTCAATGGGGATGGCACCATAGAATTTGATGgtagtgaaccctacagacacctcacccctgcctctagtactgtgaagctc Alignment from Spaln_nt2Genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACG attcaggtaaggtggtgtaaaagccatgtccttgtctgctttcttcacagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGGCAGCGCAGCGCCAGTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGAGAAATGGACCTCAATGGGGATGGCACCATAGAATTTGATGgtagtgaaccctacagacacctcacccctgcctctagtactgtgaagctc Alignment from Pairagon TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAG-GCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACG attcaggtaaggtggtgtaaaagccatgtccttgtctgctttcttcacagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGGCAGCGCAGCGCCAG-TCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGAGAAATGGACCTCAATGGGGATGGCACCATAGAATTTGATGgtagtgaaccctacagacacctcacccctgcctctagtactgtgaagctc Alignment from Exonerate_protein2genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACG attcaggtaaggtggtgtaaaagccatgtccttgtctgctttcttcacagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGGCAGCGCAGCGCCAGTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGAGAAATGGACCTCAATGGGGATGGCACCATAGAATTTGATGgtagtgaaccctacagacacctcacccctgcctctagtactgtgaagctc Alignment from Exonerate_coding2genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACG attcaggtaaggtggtgtaaaagccatgtccttgtctgctttcttcacagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGGCAGCGCAGCGCCAGTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGAGAAATGGACCTCAATGGGGATGGCACCATAGAATTTGATGgtagtgaaccctacagacacctcacccctgcctctagtactgtgaagctc Alignment from GeneWise TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGAC------GAGTTTGTAATGATGCTATCTACAGGC attcaggtaaggtggtgtaaaagccatgtccttgtctgctttcttcacagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGGCAGCGCAGCGCCAGTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGAGAAATGGACCTCAATGGGGATGGCACCATAGAATTTGATGGTAGTGAACCCTACAGACACCTCACCCCTGCCtctagtactgtgaagctc #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTG-GACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttaactgtctggctgtcctcccagatttcctggtgctttcttgcccgcagggTTTTTCAAACTTCTGCGACACAG-CCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtgatgtaatccccccttttcacccaacccagccaggacaggcatccaca Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttaactgtctggctgtcctcccagatttcctggtgctttcttgcccgcagggTTTTTCAAACTTCTGCGACACAGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtgatgtaatccccccttttcacccaacccagccaggacaggcatccaca Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttaactgtctggctgtcctcccagatttcctggtgctttcttgcccgcagGGTTTTTCAAACTTCTGCGACACAGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtgatgtaatccccccttttcacccaacccagccaggacaggcatccaca Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttaactgtctggctgtcctcccagatttcctggtgctttcttgcccgcagGGTTTTTCAAACTTCTGCGACACAGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtgatgtaatccccccttttcacccaacccagccaggacaggcatccaca Alignment from Pairagon GGTTTTTCAAACTTCTG-GACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttaactgtctggctgtcctcccagatttcctggtgctttcttgcccgcagGGTTTTTCAAACTTCTGCGACACAG-CCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtgatgtaatccccccttttcacccaacccagccaggacaggcatccaca Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttaactgtctggctgtcctcccagatttcctggtgctttcttgcccgcagGGTTTTTCAAACTTCTGCGACACAGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtgatgtaatccccccttttcacccaacccagccaggacaggcatccaca Alignment from Exonerate_coding2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttaactgtctggctgtcctcccagatttcctggtgctttcttgcccgcagGGTTTTTCAAACTTCTGCGACACAGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtgatgtaatccccccttttcacccaacccagccaggacaggcatccaca Alignment from GeneWise GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttaactgtctggctgtcctcccagatttcctggtgctttcttgcccgcagGGTTTTTCAAACTTCTGCGACACAGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtgatgtaatccccccttttcacccaacccagccaggacaggcatccaca #### Capn1_ID1362_14 --> 0 - 0 Original Alignment AAAGTTCTCTCTGAAGAGGAGATTGAT-GACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATCGACAACTTCA-GACCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from CESAR AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATCGACAACTTCAGACCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from Spaln_aa2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATCGACAACTTCAGACCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from Spaln_nt2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATCGACAACTTCAGACCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from Pairagon AAAGTTCTCTCTGAAGAGGAGATTGAT-GACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATCGACAACTTC-AGACCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from Exonerate_protein2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATCGACAACTTCAGACCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from Exonerate_coding2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATCGACAACTTCAGACCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from GeneWise AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATCGACAACTTCAGACCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAG-GCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGACGGGCGCACAGGTGG-GCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTggtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGACGGGCGCACAGGTGGGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTggtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGACGGGCGCACAGGTGGGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGACGGGCGCACAGGTGGGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGA-GGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGACGGGCGCACAGGTGG-GCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGACGGGCGCACAGGTGGGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGACGGGCGCACAGGTGGGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG tttggagggcttcttccaggccagccccggtctgttctctctcccctcagGTGGTGTGTGGCGTGGGCCATGGGGACCGA---GTACGGCACCACTATACTGTCCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGACGGGCGCACAGGTGGGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCACATTGGCTGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACTGACTTCCTTGgtaagaacggacaggaggcatggctcagcctgggtggcttggaggccggg #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGG-CTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCCTCAGTG-CTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATGTGCCCACCTGTCCGGCTGCCCTTACCAggtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCCTCAGTGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATGTGCCCACCTGTCCGGCTGCCCTTACCAggtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCCTCAGTGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCCTCAGTGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from Pairagon GTGGCTGTGAGG-CTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCCTCAGT-GCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCCTCAGTGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCCTCAGTGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgagaaaggctgcttctttctgatcttccagGTGGCTGTGAGGCCTCAGTGCTGTCGCTGGCGTGGCCAACAGGCATTGCCTCTGCACCTACGGGTAAAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATGTGCCCACCTGTCCGGCTGCCCTTACCAGgtaagtgcctgagctagtcagaaattgggagtagagacagacctctatac #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTC-CTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCCTGCTGG-CTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCCTGCTGGCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCCTGCTGGCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCCTGCTGGCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGT-CCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCCTGCTGG-CTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCCTGCTGGCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCCTGCTGGCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCCTGCTGGCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTG-TTGCTGGAGGGTGGGGTCCAGAGCCCTg acccttggacaaggacccttggttaacatttaacatgttgtgcactgcaggcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTGGTTCTCTCAGCACCTTCCTATCTCTGCTTGCTGGAGG-TGGGGTCCAGAGCCCTggtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg acccttggacaaggacccttggttaacatttaacatgttgtgcactgcaggcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTGGTTCTCTCAGCACCTTCCTATCTCTGCTTGCTGGAGGTGGGGTCCAGAGCCCTggtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTGGTTCTCTCAGCACCTTCCTATCTCTGCTTGCTGGAGGTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTGGTTCTCTCAGCACCTTCCTATCTCTGCTTGCTGGAGGTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTG-TTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTGGTTCTCTCAGCACCTTCCTATCTCTGCTTGCTGGA-GGTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTGGTTCTCTCAGCACCTTCCTATCTCTGCTTGCTGGAGGTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTGGTTCTCTCAGCACCTTCCTATCTCTGCTTGCTGGAGGTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acccttggacaaggacccttggttaacatttaacatgttgtgcactgcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTGGTTCTCTCAGCACCTTCCTATCTCTGCTTGCTGGAGGTGGGGTCCAGAGCCCTGgtcagcgtgtgctctaataccccaccctctcctacaaaaagggaagccct #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAG-AACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGCAACATCT-TACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTTATCTACATAGACAACAGGGCCCAAggtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGCAACATCTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTTATCTACATAGACAACAGGGCCCAAggtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGCAACATCTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTTATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGCAACATCTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTTATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAG-AACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGCAACATC-TTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTTATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGCAACATCTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTTATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGCAACATCTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTTATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gtgaaatctaatctggttacggtgatgggggtgcttgccacaccccgcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGCAACATCTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTTATCTACATAGACAACAGGGCCCAAGgtaggttgaggtcaggatccagggcctggttagcagacactaataatgag #### Catsper1_ID930_7 --> 2 - 2 Original Alignment gcGCCTGGTACATCATA-CCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa cccgctggaaagggtggcaccttggacacctggcctttctccttgtttaggtGCCTGGTACATCATACCCAATCC-CATGATTTACATTGTCATCCAATACTTCATCTTCCTCaagtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from CESAR gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa cccgctggaaagggtggcaccttggacacctggcctttctccttgtttaggtGCCTGGTACATCATACCCAATCCCATGATTTACATTGTCATCCAATACTTCATCTTCCTCaagtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from Spaln_aa2Genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCCAATCCCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from Spaln_nt2Genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCCAATCCCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from Pairagon GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCCAATCCCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from Exonerate_protein2genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCCAATCCCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from Exonerate_coding2genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCCAATCCCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from GeneWise GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCCAATCCCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTC-CTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagcCTGGTGATTGCTGTCCCTAG-AGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagcCTGGTGATTGCTGTCCCTAGAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCCTAGAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCCTAGAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from Pairagon CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCCTAGAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCCTAGAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCCTAGAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCCTAGAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACC-CTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagggTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCCTGGCCGGTG-GCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAggtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagggTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCCTGGCCGGTGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAggtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCCTGGCCGGTGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCCTGGCCGGTGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGA-CCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCCTGGCCGGT-GGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCCTGGCCGGTGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCCTGGCCGGTGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCCTGGCCGGTGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCAT-CTGCATCGAGAGCAGCGAGAGTACct atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCCTGC-TCGCGAGCAGCGAGAGTATctgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCCTGCTCGCGAGCAGCGAGAGTATctgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCCTGCTCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGA---GCGACCCTCCTGCTCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGA---GCGACCCTCCTGCTCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCCTGCTCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from Exonerate_coding2genome GTGAGCTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccag-----CTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCCTGCTCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCCTGCTCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGC-GGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ccactacccttatgattgaccttgggcattttattttacatttctaacagaGCTCAGATGCTACTGGCAGAGGTGTCACGGGGGCGAGGGGAGCTCCAAGGTGAACGTCGGGGAGCTGC-GGGCCGCCTGGCAAGGCTGGAACTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAGgtatgatgcagtgttgtgggcagcctggggcagctaagggaggcaagcca Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGC-GGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ccactacccttatgattgaccttgggcattttattttacatttctaacagaGCTCAGATGCTACTGGCAGAGGTGTCACGGGGGCGAGGGGAGCTCCAAGGTGAACGTCGGGGAGCTGC-GGGCCGCCTGGCAAGGCTGGAACTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAGgtatgatgcagtgttgtgggcagcctggggcagctaagggaggcaagcca Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ccactacccttatgattgaccttgggcattttattttacatttctaacagAGCTCAGATGCTACTGGCAGAGGTGTCACGGGGGCGAGGGGAGCTCCAAGGTGAACGTCGGGGAGCTGCGGGCCGCCTGGCAAGGCTGGAACTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAGgtatgatgcagtgttgtgggcagcctggggcagctaagggaggcaagcca Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ccactacccttatgattgaccttgggcattttattttacatttctaacagAGCTCAGATGCTACTGGCAGAGGTGTCACGGGGGCGAGGGGAGCTCCAAGGTGAACGTCGGGGAGCTGCGGGCCGCCTGGCAAGGCTGGAACTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAGgtatgatgcagtgttgtgggcagcctggggcagctaagggaggcaagcca Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACG-CGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ccactacccttatgattgaccttgggcattttattttacatttctaacagAGCTCAGATGCTACTGGCAGAGGTGTCACGGGGGCGAGGGGAGCTCCAAGGTGAACGTCGGGGAGCTGCGG-GCCGCCTGGCAAGGCTGGAACTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAGgtatgatgcagtgttgtgggcagcctggggcagctaagggaggcaagcca Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ccactacccttatgattgaccttgggcattttattttacatttctaacagAGCTCAGATGCTACTGGCAGAGGTGTCACGGGGGCGAGGGGAGCTCCAAGGTGAACGTCGGGGAGCTGCGGGCCGCCTGGCAAGGCTGGAACTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAGgtatgatgcagtgttgtgggcagcctggggcagctaagggaggcaagcca Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGT ccactacccttatgattgaccttgggcattttattttacatttctaacagAGCTCAGATGCTACTGGCAGAGGTGTCACGGGGGCGAGGGGAGCTCCAAGGTGAACGTCGGGGAGCTGCGGGCCGCCTGGCAAGGCTGGAACTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTgtgaggtatgatgcagtgttgtgggcagcctggggcagctaagggaggcaagcca Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG ccactacccttatgattgaccttgggcattttattttacatttctaacagAGCTCAGATGCTACTGGCAGAGGTGTCACGGGGGCGAGGGGAGCTCCAAGGTGAACGTCGGGGAGCTGCGGGCCGCCTGGCAAGGCTGGAACTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAGgtatgatgcagtgttgtgggcagcctggggcagctaagggaggcaagcca #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCG-GTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCACGTGG-CCTG---GCTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTCAGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCACGTGGCCTGGCT---GGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTCAGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCACGTGGCCTGGCT---GGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTCAGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCACGTGGCCTGG---CTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTCAGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCACGTGGCCTGG---CTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTCAGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCACGTGGCCTGGCT---GGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTCAGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCACGTGGCCTGG---CTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTCAGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT tgtgtgtgtgaggcacctgcaatttgtggcgggcgtcggcggcgccgcagCTGCGTCAGTACCCACGTGGCCTGGCT---GGGGCGCGAGCTGGGCCTCGGACTGTGGAGACTCAGAATGGACGGCTCATCGAAGTGGAGCAAAATgtgagtgaaaaactgggggttgcccaagggatggcagggctaacaactta #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttaggTACCGGCATCTGCGAGCAGC-TCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGGAGGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from CESAR gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttaggTACCGGCATCTGCGAGCAGCTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGGAGGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from Spaln_aa2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGCGAGCAGCTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGGAGGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from Spaln_nt2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGCGAGCAGCTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGGAGGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from Pairagon GTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGCGAGCAGC-TCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGGAGGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from Exonerate_protein2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGCGAGCAGCTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGGAGGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from Exonerate_coding2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGCGAGCAGCTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGGAGGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagaaggaaggactaggtgttaagacctatctaatgtccttctttcttagGTACCGGCATCTGCGAGCAGCTCTGGAAGCTGAGCTGCAGGCAGCATCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGGAGGAGGAGCTGATCCAGgtaatcctgcctgagacggaggtgctggcacccatctgcaatccaacaat #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAG-GCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagccTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGCGGTGGGA-GCTGAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagccTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGCGGTGGGAGCTGAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGCGGTGGGAGCTGAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGCGGTGGGAGCTGAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAG-GCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGCGGTGGGA-GCTGAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGCGGTGGGAGCTGAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGCGGTGGGAGCTGAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG gggtgggagtgggagaggatggacagaaaaaacctcaaactcttctacagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGCGGTGGGAGCTGAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGTCAACTACGTATGCTTCAGGCACAGCTTGGCAGCCAGgtaagtccctccagtattcttattttcactgtttcccacccacatacttt #### Ccdc88b_ID1838_11 --> 0 - 0 Original Alignment GAGGAGCGGGTCCTTTCCGAGGCCCTG-GAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGCGAGGCTTCAA-GGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from CESAR GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGCGAGGCTTCAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from Spaln_aa2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGCGAGGCTTCAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from Spaln_nt2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGCGAGGCTTCAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from Pairagon GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGCGAGGCTTCAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from Exonerate_protein2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGCGAGGCTTCAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from Exonerate_coding2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGCGAGGCTTCAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from GeneWise GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGCGAGGCTTCAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATT-CGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaaggGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCCGAA-ACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from CESAR gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaaggGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCCGAAACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCCGAAACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCCGAAACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from Pairagon GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCCGAAACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCCGAAACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from Exonerate_coding2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTC---AGTTGGAGGCTGAAATTCCGAAACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCCGAAACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAG-GCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGCGCTCCTGCTA-TGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGCGCTCCTGCTATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGCGCTCCTGCTATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGCGCTCCTGCTATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAG-GCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGCGCTCCTGCT-ATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGCGCTCCTGCTATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGCGCTCCTGCTATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGCGCTCCTGCTATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct #### Ccdc88b_ID1843_6 --> 0 - 0 Original Alignment TGTGAACACCGGGAGCTCTTCATCCGTCAC-ATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ggaggtggggcctctgtgtggcagctttgcaaaaccttttcatttttcagTGTGAACACCGGGAGCTCTTCATCCGTCACCATCC-GGGCCTCAGCCTTGACGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaaggatagtagcaatgccgtccatgggcttgattgggttcattctctc Alignment from CESAR TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ggaggtggggcctctgtgtggcagctttgcaaaaccttttcatttttcagTGTGAACACCGGGAGCTCTTCATCCGTCACCATCCGGGCCTCAGCCTTGACGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaaggatagtagcaatgccgtccatgggcttgattgggttcattctctc Alignment from Spaln_aa2Genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ggaggtggggcctctgtgtggcagctttgcaaaaccttttcatttttcagTGTGAACACCGGGAGCTCTTCATCCGTCACCATCCGGGCCTCAGCCTTGACGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaaggatagtagcaatgccgtccatgggcttgattgggttcattctctc Alignment from Spaln_nt2Genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ggaggtggggcctctgtgtggcagctttgcaaaaccttttcatttttcagTGTGAACACCGGGAGCTCTTCATCCGTCACCATCCGGGCCTCAGCCTTGACGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaaggatagtagcaatgccgtccatgggcttgattgggttcattctctc Alignment from Pairagon TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ggaggtggggcctctgtgtggcagctttgcaaaaccttttcatttttcagTGTGAACACCGGGAGCTCTTCATCCGTCACCATCCGGGCCTCAGCCTTGACGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaaggatagtagcaatgccgtccatgggcttgattgggttcattctctc Alignment from Exonerate_protein2genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ggaggtggggcctctgtgtggcagctttgcaaaaccttttcatttttcagTGTGAACACCGGGAGCTCTTCATCCGTCACCATCCGGGCCTCAGCCTTGACGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaaggatagtagcaatgccgtccatgggcttgattgggttcattctctc Alignment from Exonerate_coding2genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ggaggtggggcctctgtgtggcagctttgcaaaaccttttcatttttcagTGTGAACACCGGGAGCTCTTCATCCGTCACCATCCGGGCCTCAGCCTTGACGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaaggatagtagcaatgccgtccatgggcttgattgggttcattctctc Alignment from GeneWise TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ggaggtggggcctctgtgtggcagctttgcaaaaccttttcatttttcagTGTGAACACCGGGAGCTCTTCATCCGTCACCATCCGGGCCTCAGCCTTGACGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaaggatagtagcaatgccgtccatgggcttgattgggttcattctctc #### Ccdc88b_ID1844_5 --> 2 - 0 Original Alignment aaGAGGCAGTGGAC------------------------------------------------------GAGCTGGAAAGCATC-CTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagagGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGGTGAAGAGGGAGCTGGAAAGCATCCCTTCGGT-GTTGCTGGGGGCCTCAGTGCAGgtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from CESAR aaGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagagGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatcccttcggtgttgctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from Spaln_aa2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatcccttcggtgttgctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from Spaln_nt2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCG GCTGTTGCTGGG---------GGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGgttgttgctgggggcctcagtgcaggtgaagagggagctggaaagCATCCCTTCGGTGTTGCTGGGGGCCTCAGTGCAGgtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from Pairagon AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatcccttcggtgttgctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from Exonerate_protein2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatcccttcggtgttgctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from Exonerate_coding2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatcccttcggtgttgctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from GeneWise AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatcccttcggtgttgctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATG-GGGTGTGACCCCTTCTCAg ggcccagcagctcctgtgaggatgtcttatgctctctaatctttttccagGAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACCACACGGGT-TGACCCCTTCTCAggtaagccttcctaccctccctctgtcctctgtcactgccctatatcccta Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagcagctcctgtgaggatgtcttatgctctctaatctttttccagGAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACCACACGGGTTGACCCCTTCTCAggtaagccttcctaccctccctctgtcctctgtcactgccctatatcccta Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagctcctgtgaggatgtcttatgctctctaatctttttccagGAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACCACACGGGTTGACCCCTTCTCAGgtaagccttcctaccctccctctgtcctctgtcactgccctatatcccta Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagctcctgtgaggatgtcttatgctctctaatctttttccagGAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACCACACGGGTTGACCCCTTCTCAGgtaagccttcctaccctccctctgtcctctgtcactgccctatatcccta Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagctcctgtgaggatgtcttatgctctctaatctttttccagGAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACCACACGGGTTGACCCCTTCTCAGgtaagccttcctaccctccctctgtcctctgtcactgccctatatcccta Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagctcctgtgaggatgtcttatgctctctaatctttttccagGAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACCACACGGGTTGACCCCTTCTCAGgtaagccttcctaccctccctctgtcctctgtcactgccctatatcccta Alignment from Exonerate_coding2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagctcctgtgaggatgtcttatgctctctaatctttttccagGAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACCACACGGGTTGACCCCTTCTCAGgtaagccttcctaccctccctctgtcctctgtcactgccctatatcccta Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagctcctgtgaggatgtcttatgctctctaatctttttccagGAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACCACACGGGTTGACCCCTTCTCAGgtaagccttcctaccctccctctgtcctctgtcactgccctatatcccta #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAG-GAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGCGAAGAGGGGG-TCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCatgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGCGAAGAGGGGGTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCatgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGCGAAGAGGGGGTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGCGAAGAGGGGGTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAG-GAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGCGAAGAGGGGG-TCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGCGAAGAGGGGGTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGCGAAGAGGGGGTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGCGAAGAGGGGGTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTA-GTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagatTATGCATTTCTAAATTATGCGCCTTCTTTACGTAG-TGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCCACAAGACTACACCGTCTCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagatTATGCATTTCTAAATTATGCGCCTTCTTTACGTAGTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCCACAAGACTACACCGTCTCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagATTATGCATTTCTAAATTATGCGCCTTCTTTACGTAGTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCCACAAGACTACACCGTCTCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagATTATGCATTTCTAAATTATGCGCCTTCTTTACGTAGTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCCACAAGACTACACCGTCTCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTA-GTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagATTATGCATTTCTAAATTATGCGCCTTCTTTACGTAG-TGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCCACAAGACTACACCGTCTCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagATTATGCATTTCTAAATTATGCGCCTTCTTTACGTAGTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCCACAAGACTACACCGTCTCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacctaagtgttttgttgttcagggaaccttctgcgtgtttcctagATTATGCATTTCTAAATTATGCGCCTTCTTTACGTAGTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCCACAAGACTACACCGTCTCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc Alignment from GeneWise -------------------------------------------------GATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT TGGTGACCTAAGTGTTTTGTTGTTCAGGGAACCTTCTGCGTGTTTCCTAGATTATGCATTTCTAAATTATGCGCCTTCTTTACGTAGTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCCACAAGACTACACCGTCTCACTGCCTACTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagggctctttgctcttgcttttataattcgtaatcagcattttccttc #### Cd5_ID2994_4 --> 2 - 1 Original Alignment agCCCCAGAGAACGACACCTCCA-CCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagagCCCCAGAGAACAACACCTCCACCCCACAACCA-CCCACCCACCACCGTGCCGGAGCCCACAggtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from CESAR agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagagCCCCAGAGAACAACACCTCCACCCCACAACCACCCACCCACCACCGTGCCGGAGCCCACAggtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Spaln_aa2Genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCCACAACCACCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Spaln_nt2Genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCCACAACCACCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Pairagon AGCCCCAGAGAACGACACCTCCA-CCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCCACAACCA-CCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Exonerate_protein2genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCCACAACCACCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Exonerate_coding2genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCCACAACCACCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from GeneWise AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCCACAACCACCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta #### Cd6_ID3013_11 --> 2 - 1 Original Alignment gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAAC-AACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg ccgccaggactacacagataaccccggtcatcttgtctccctgtccacagaaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCATGTGAGGAACCAACA-TGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTGTTTTCAggtaagggtgtgtccttccatgctaccaactctgtgtccaaactgcccaga Alignment from CESAR gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg ccgccaggactacacagataaccccggtcatcttgtctccctgtccacagaaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCATGTGAGGAACCAACATGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTGTTTTCAggtaagggtgtgtccttccatgctaccaactctgtgtccaaactgcccaga Alignment from Spaln_aa2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccgccaggactacacagataaccccggtcatcttgtctccctgtccacagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCATGTGAGGAACCAACATGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTGTTTTCAGgtaagggtgtgtccttccatgctaccaactctgtgtccaaactgcccaga Alignment from Spaln_nt2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccgccaggactacacagataaccccggtcatcttgtctccctgtccacagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCATGTGAGGAACCAACATGATTCCAGCAC---------------CTCGTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTGTTTTCAGgtaagggtgtgtccttccatgctaccaactctgtgtccaaactgcccaga Alignment from Pairagon GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccgccaggactacacagataaccccggtcatcttgtctccctgtccacagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCATGTGAGGAACCAACATGATTCCAGCACCTC---------------GTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTGTTTTCAGgtaagggtgtgtccttccatgctaccaactctgtgtccaaactgcccaga Alignment from Exonerate_protein2genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccgccaggactacacagataaccccggtcatcttgtctccctgtccacagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCATGTGAGGAACCAACATGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTGTTTTCAGgtaagggtgtgtccttccatgctaccaactctgtgtccaaactgcccaga Alignment from Exonerate_coding2genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccgccaggactacacagataaccccggtcatcttgtctccctgtccacagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCATGTGAGGAACCAACATGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTGTTTTCAGgtaagggtgtgtccttccatgctaccaactctgtgtccaaactgcccaga Alignment from GeneWise GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccgccaggactacacagataaccccggtcatcttgtctccctgtccacagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCATGTGAGGAACCAACATGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTGTTTTCAGgtaagggtgtgtccttccatgctaccaactctgtgtccaaactgcccaga #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTAC-GCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACCGCTGGGTGACTGCTCTGCACTACCACCTTCC-GGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACCGCTGGGTGACTGCTCTGCACTACCACCTTCCGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACCGCTGGGTGACTGCTCTGCACTACCACCTTCCGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACCGCTGGGTGACTGCTCTGCACTACCACCTTCCGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACCGCTGGGTGACTGCTCTGCACTACCACCTTCCGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACCGCTGGGTGACTGCTCTGCACTACCACCTTCCGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACCGCTGGGTGACTGCTCTGCACTACCACCTTCCGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG cccattgtcccccctgctcttcaaacctgtttctctccctttcctctcagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACCGCTGGGTGACTGCTCTGCACTACCACCTTCCGGATGAAGAGTACCTGgtaagtatccttgagtagtggaggagccttgccaagataaaagaaaatgc #### Cdc42bpg_ID1575_5 --> 0 - 2 Original Alignment TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTAT-CTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACag ctgtcattctgtgtctggattggatctaccaacctggctgtcctcggcagTACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTTGGCTG-GATGGTGCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACaggtaagtccccgagttgtgtcacttcccagtcttcctccctaaagacctgt Alignment from CESAR TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACag ctgtcattctgtgtctggattggatctaccaacctggctgtcctcggcagTACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTTGGCTGGATGGTGCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACaggtaagtccccgagttgtgtcacttcccagtcttcctccctaaagacctgt Alignment from Spaln_aa2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtctggattggatctaccaacctggctgtcctcggcagTACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTTGGCTGGATGGTGCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAGgtaagtccccgagttgtgtcacttcccagtcttcctccctaaagacctgt Alignment from Spaln_nt2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtctggattggatctaccaacctggctgtcctcggcagTACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTTGGCTGGATGGTGCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAGgtaagtccccgagttgtgtcacttcccagtcttcctccctaaagacctgt Alignment from Pairagon TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATC-TGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtctggattggatctaccaacctggctgtcctcggcagTACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTTGGCTG-GATGGTGCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAGgtaagtccccgagttgtgtcacttcccagtcttcctccctaaagacctgt Alignment from Exonerate_protein2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtctggattggatctaccaacctggctgtcctcggcagTACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTTGGCTGGATGGTGCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAGgtaagtccccgagttgtgtcacttcccagtcttcctccctaaagacctgt Alignment from Exonerate_coding2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtctggattggatctaccaacctggctgtcctcggcagTACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTTGGCTGGATGGTGCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAGgtaagtccccgagttgtgtcacttcccagtcttcctccctaaagacctgt Alignment from GeneWise TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtctggattggatctaccaacctggctgtcctcggcagTACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTTGGCTGGATGGTGCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAGgtaagtccccgagttgtgtcacttcccagtcttcctccctaaagacctgt #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGC-CACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctaggGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCC-CCTTGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctaggGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCCCTTGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCCCTTGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from Spaln_nt2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCCCTTGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGG-CCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCC-CCTTGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCCCTTGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCCCTTGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG aacacacacacacacctacaccaagcctttgtgtcccccgcttatcctagGGATGTGAAGCCAGACAACATCCTGCTGGACATGAATGGCCCACATCCCCTTGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtataaaaaccacctagaattgagctgaggatatagccaagtgtagggac #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGG-TCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGCTCACTGGGAG-CTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGCTCACTGGGAGCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGCTCACTGGGAGCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGCTCACTGGGAGCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGG-TCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGCTCACTGGGAG-CTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGCTCACTGGGAGCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGCTCACTGGGAGCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG attgctggctccagtgctgtggcctcatactttctcatttgatactccagGTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGCTCACTGGGAGCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtctgactgtgtggcccggggaccccttcattgtgtgattcccggttact #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTT-CTTCAGGAGAAACTGGCAg gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagagCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCCTTC-GGAGAAACTGGCAggtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagagCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCCTTCGGAGAAACTGGCAggtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCCTTCGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCCTTCGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCCTTCGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCCTTCGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCCTTCGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCCTTCGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTC-TCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagagACATTGAGGGACAGCAAGGCTTCCCTCCTCACAAG-TGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagagACATTGAGGGACAGCAAGGCTTCCCTCCTCACAAGTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagAGACATTGAGGGACAGCAAGGCTTCCCTCCTCACAAGTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagAGACATTGAGGGACAGCAAGGCTTCCCTCCTCACAAGTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagAGACATTGAGGGACAGCAAGGCTTCCCTCCTCACAAGTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagAGACATTGAGGGACAGCAAGGCTTCCCTCCTCACAAGTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagAGACATTGAGGGACAGCAAGGCTTCCCTCCTCACAAGTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from GeneWise --GAGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagCAGAGACATTGAGGGACAGCAAGGCTTCCCTCCTCACAAGTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg #### Cdc42bpg_ID1588_18 --> 1 - 0 Original Alignment gGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATG-GCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG cacctctaatggctgaggacccaggtcacatcctctcctgttctaaacaggGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGCGCTG-GGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTTTGgtaagtcccctgcagatgagacatgtgtgtgtgtgtgtgtgtggatgtgt Alignment from CESAR gGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG cacctctaatggctgaggacccaggtcacatcctctcctgttctaaacaggGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGCGCTGGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTTTGgtaagtcccctgcagatgagacatgtgtgtgtgtgtgtgtgtggatgtgt Alignment from Spaln_aa2Genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG cacctctaatggctgaggacccaggtcacatcctctcctgttctaaacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGCGCTGGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTTTGgtaagtcccctgcagatgagacatgtgtgtgtgtgtgtgtgtggatgtgt Alignment from Spaln_nt2Genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG cacctctaatggctgaggacccaggtcacatcctctcctgttctaaacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGCGCTGGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTTTGgtaagtcccctgcagatgagacatgtgtgtgtgtgtgtgtgtggatgtgt Alignment from Pairagon GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG cacctctaatggctgaggacccaggtcacatcctctcctgttctaaacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGCGCTGGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTTTGgtaagtcccctgcagatgagacatgtgtgtgtgtgtgtgtgtggatgtgt Alignment from Exonerate_protein2genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG cacctctaatggctgaggacccaggtcacatcctctcctgttctaaacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGCGCTGGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTTTGgtaagtcccctgcagatgagacatgtgtgtgtgtgtgtgtgtggatgtgt Alignment from Exonerate_coding2genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG cacctctaatggctgaggacccaggtcacatcctctcctgttctaaacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGCGCTGGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTTTGgtaagtcccctgcagatgagacatgtgtgtgtgtgtgtgtgtggatgtgt Alignment from GeneWise GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG cacctctaatggctgaggacccaggtcacatcctctcctgttctaaacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGCGCTGGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTTTGgtaagtcccctgcagatgagacatgtgtgtgtgtgtgtgtgtggatgtgt #### Cdc42bpg_ID1591_21 --> 2 - 0 Original Alignment atGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTG-TCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagatGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCT-CTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from CESAR atGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagatGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from Spaln_aa2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from Spaln_nt2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from Pairagon ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from Exonerate_protein2genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from Exonerate_coding2genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from GeneWise ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata #### Cdc42bpg_ID1593_23 --> 0 - 0 Original Alignment AGTGTGTTCCCCAGGGTG-CCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG gtggggcttctcccccaacccctcctcaattctactttcgctactttcagAGTGTGTTCCCCCGGGTGCCCCGCAG-CACCACCACCCCTGCCAAAGGTCCTCCTGCTAAGgtaagtgtccggagggacacgacagcaggatagtgagccattcagcccgt Alignment from CESAR AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG gtggggcttctcccccaacccctcctcaattctactttcgctactttcagAGTGTGTTCCCCCGGGTGCCCCGCAGCACCACCACCCCTGCCAAAGGTCCTCCTGCTAAGgtaagtgtccggagggacacgacagcaggatagtgagccattcagcccgt Alignment from Spaln_aa2Genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG gtggggcttctcccccaacccctcctcaattctactttcgctactttcagAGTGTGTTCCCCCGGGTGCCCCGCAGCACCACCACCCCTGCCAAAGGTCCTCCTGCTAAGgtaagtgtccggagggacacgacagcaggatagtgagccattcagcccgt Alignment from Spaln_nt2Genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG gtggggcttctcccccaacccctcctcaattctactttcgctactttcagAGTGTGTTCCCCCGGGTGCCCCGCAGCACCACCACCCCTGCCAAAGGTCCTCCTGCTAAGgtaagtgtccggagggacacgacagcaggatagtgagccattcagcccgt Alignment from Pairagon AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG gtggggcttctcccccaacccctcctcaattctactttcgctactttcagAGTGTGTTCCCCCGGGTGCCCCGCAGCACCACCACCCCTGCCAAAGGTCCTCCTGCTAAGgtaagtgtccggagggacacgacagcaggatagtgagccattcagcccgt Alignment from Exonerate_protein2genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG gtggggcttctcccccaacccctcctcaattctactttcgctactttcagAGTGTGTTCCCCCGGGTGCCCCGCAGCACCACCACCCCTGCCAAAGGTCCTCCTGCTAAGgtaagtgtccggagggacacgacagcaggatagtgagccattcagcccgt Alignment from Exonerate_coding2genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG gtggggcttctcccccaacccctcctcaattctactttcgctactttcagAGTGTGTTCCCCCGGGTGCCCCGCAGCACCACCACCCCTGCCAAAGGTCCTCCTGCTAAGgtaagtgtccggagggacacgacagcaggatagtgagccattcagcccgt Alignment from GeneWise AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG gtggggcttctcccccaacccctcctcaattctactttcgctactttcagAGTGTGTTCCCCCGGGTGCCCCGCAGCACCACCACCCCTGCCAAAGGTCCTCCTGCTAAGgtaagtgtccggagggacacgacagcaggatagtgagccattcagcccgt #### Cdc42bpg_ID1594_24 --> 0 - 1 Original Alignment CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCT-ACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTCACAAAGTGTC-CCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACagtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from CESAR CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTCACAAAGTGTCCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACagtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Spaln_aa2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTCACAAAGTGTCCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Spaln_nt2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTCACAAAGTGTCCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Pairagon CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCT-ACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTCACAAAGTGTC-CCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Exonerate_protein2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTCACAAAGTGTCCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Exonerate_coding2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTCACAAAGTGTCCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from GeneWise CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTCACAAAGTGTCCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGAC-TCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTGATCTCCC-TCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAaggtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from CESAR GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTGATCTCCCTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAaggtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Spaln_aa2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTGATCTCCCTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Spaln_nt2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTGATCTCCCTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Pairagon GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTGATCTCCCTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Exonerate_protein2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTGATCTCCCTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Exonerate_coding2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTGATCTCCCTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from GeneWise GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCTCAGTGATCTCCCTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc #### Cdc42bpg_ID1601_31 --> 2 - 0 Original Alignment gtTACACAGCACCCTACCTAACAGTGTTCAGTGAA-AACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggacctgacttgcccggggctacacactattaattgtatcttttacttaggtTACACAGCACCCTACCTAACAGTGTTCAGTGAACAACGCCC-TGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaagtgttagcccagattgtgggctaggtgcagtgggtgacatggcttg Alignment from CESAR gtTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggacctgacttgcccggggctacacactattaattgtatcttttacttaggtTACACAGCACCCTACCTAACAGTGTTCAGTGAACAACGCCCTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaagtgttagcccagattgtgggctaggtgcagtgggtgacatggcttg Alignment from Spaln_aa2Genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggacctgacttgcccggggctacacactattaattgtatcttttacttagGTTACACAGCACCCTACCTAACAGTGTTCAGTGAACAACGCCCTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaagtgttagcccagattgtgggctaggtgcagtgggtgacatggcttg Alignment from Spaln_nt2Genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggacctgacttgcccggggctacacactattaattgtatcttttacttagGTTACACAGCACCCTACCTAACAGTGTTCAGTGAACAACGCCCTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaagtgttagcccagattgtgggctaggtgcagtgggtgacatggcttg Alignment from Pairagon GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggacctgacttgcccggggctacacactattaattgtatcttttacttagGTTACACAGCACCCTACCTAACAGTGTTCAGTGAACAACGCCCTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaagtgttagcccagattgtgggctaggtgcagtgggtgacatggcttg Alignment from Exonerate_protein2genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggacctgacttgcccggggctacacactattaattgtatcttttacttagGTTACACAGCACCCTACCTAACAGTGTTCAGTGAACAACGCCCTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaagtgttagcccagattgtgggctaggtgcagtgggtgacatggcttg Alignment from Exonerate_coding2genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggacctgacttgcccggggctacacactattaattgtatcttttacttagGTTACACAGCACCCTACCTAACAGTGTTCAGTGAACAACGCCCTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaagtgttagcccagattgtgggctaggtgcagtgggtgacatggcttg Alignment from GeneWise --TACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggacctgacttgcccggggctacacactattaattgtatcttttacttagGTTACACAGCACCCTACCTAACAGTGTTCAGTGAACAACGCCCTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaagtgttagcccagattgtgggctaggtgcagtgggtgacatggcttg #### Cdc42bpg_ID1602_32 --> 0 - 1 Original Alignment GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAG-GTCCGCCTGACCTACCTCAGGAATCCATTGGCAg ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAACGTCCGCCTGA-CTACCTCAGGAATCCATTGGCAggtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from CESAR GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAG-GTCCGCCTGACCTACCTCAGGAATCCATTGGCAg ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAACGTCCGCCTGA-CTACCTCAGGAATCCATTGGCAggtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from Spaln_aa2Genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAACGTCCGCCTGACTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from Spaln_nt2Genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAACGTCCGCCTGACTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from Pairagon GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAG-GTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAACGTCCGCCTGA-CTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from Exonerate_protein2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAACGTCCGCCTGACTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from Exonerate_coding2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAACGTCCGCCTGACTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa Alignment from GeneWise GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG ggctaggtgcagtgggtgacatggcttgtttattttgtgtgcctttgtagGTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAACGTCCGCCTGACTACCTCAGGAATCCATTGGCAGgtaagagcgtatatatctgcctacatctgtgtgtgtttacctgtgcacaa #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAG-TTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaaggGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAACTTCATCTCGC-GCCCACCAACTTCATCCACCTGGTGCATGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaaggGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAACTTCATCTCGCGCCCACCAACTTCATCCACCTGGTGCATGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAACTTCATCTCGCGCCCACCAACTTCATCCACCTGGTGCATGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAACTTCATCTCGCGCCCACCAACTTCATCCACCTGGTGCATGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAG-TTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAACTTCATCTCG-CGCCCACCAACTTCATCCACCTGGTGCATGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAACTTCATCTCGCGCCCACCAACTTCATCCACCTGGTGCATGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAACTTCATCTCGCGCCCACCAACTTCATCCACCTGGTGCATGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcttgcatgctggcccagcacctgctaattttcactttgtaagGGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAACTTCATCTCGCGCCCACCAACTTCATCCACCTGGTGCATGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtatttcgtgtgtaggcaatcacaaaactcgctggagttgttggtccaat #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCA-GAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTCACGAGGCAT-TCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCAtgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTCACGAGGCATTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCAtgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTCACGAGGCATTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTCACGAGGCATTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCA-GAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTCACGAGGCA-TTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTCACGAGGCATTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTCACGAGGCATTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT cccatggtctgagcttcccagtcctgcctttcatttgtttatccaatcagGCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCTGGGCCACAGCGGCCTCACAGCTTCTCACGAGGCATTCGGCGGCCAGTGTCCACAGGCAGTGATGGTCTCCCAGGAGAAACAGACCCATgtgagtacagccctccgtctgccagtactcgcatgcttcctccaccttac #### Cdk2ap2_ID298_2 --> 2 - 0 Original Alignment ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCT-GCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagccGGTAGTGTCCCATCGCCGTCGGGCTCAGTGCCAGGAGCTCGCTGCACCTT-CAGACCACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from CESAR ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagccGGTAGTGTCCCATCGCCGTCGGGCTCAGTGCCAGGAGCTCGCTGCACCTTCAGACCACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from Spaln_aa2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCGTCGGGCTCAGTGCCAGGAGCTCGCTGCACCTTCAGACCACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from Spaln_nt2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCGTCGGGCTCAGTGCCAGGAGCTCGCTGCACCTTCAGACCACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from Pairagon CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCT-GCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCGTCGGGCTCAGTGCCAGGAGCTCGCTGCACC-TTCAGACCACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from Exonerate_protein2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCGTCGGGCTCAGTGCCAGGAGCTCGCTGCACCTTCAGACCACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from Exonerate_coding2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCGTCGGGCTCAGTGCCAGGAGCTCGCTGCACCTTCAGACCACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg Alignment from GeneWise CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggtcagtcctgtgctgtcctgcagCCGGTAGTGTCCCATCGCCGTCGGGCTCAGTGCCAGGAGCTCGCTGCACCTTCAGACCACTATTTAACGACTTTGGTCCACCCTCCATGGGTTATGTACAGgtatgtgtggccaagagcttgctcatggctgagggcaggggatcccatcg #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAG-AGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGCAGCACCT-CACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAggtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGCAGCACCTCACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAggtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGCAGCACCTCACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGCAGCACCTCACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Pairagon GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAG-AGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGCAGCACCT-CACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGCAGCACCTCACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGCAGCACCTCACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGCAGCACCTCACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTAC-ACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCA-TGTGGATTATTGGAGCTTTGGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCATGTGGATTATTGGAGCTTTGGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCATGTGGATTATTGGAGCTTTGGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCATGTGGATTATTGGAGCTTTGGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTA-CACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCA-TGTGGATTATTGGAGCTTTGGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCATGTGGATTATTGGAGCTTTGGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCATGTGGATTATTGGAGCTTTGGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG aatagctcttttcttacaatgttggtacataatcctctcctgtctcctagGCCCCAGAGCTCTTTGAAAATAAGCCGTACCACAGCCATGTGGATTATTGGAGCTTTGGTACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagcaatgatgagagctttagcatagttcctggtagtggaaccagttc #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGC-CCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcaggtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGCCCCCAGAG-GAACAAAGGAGAGAAAGGAGACAAAggtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from CESAR gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcaggtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGCCCCCAGAGGAACAAAGGAGAGAAAGGAGACAAAggtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGCCCCCAGAGGAACAAAGGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGCCCCCAGAGGAACAAAGGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGCCCCCAGAGGAACAAAGGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGCCCCCAGAGGAACAAAGGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGCCCCCAGAGGAACAAAGGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag Alignment from GeneWise GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcatacttggatgtctctttctttaaaaacaatgcagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGCCCCCAGAGGAACAAAGGAGAGAAAGGAGACAAAGgtaagaagtggtgtgtgactgctggggttctgggattcatcagagaagag #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGG-CCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCACCAG-TCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAagtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCACCAGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAagtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCACCAGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCACCAGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCACCAGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCACCAGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCACCAGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCACCAGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCA-GAAGATATCTTGGCCATGCTGCGAc aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagcaTCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCACGAAGATA-CTTGGCCATGCTGCGAcgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagcaTCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCACGAAGATACTTGGCCATGCTGCGAcgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCACGAAGATACTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCACGAAGATACTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCA-GAAGATATCTTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCACGAAGATA-CTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCACGAAGATACTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCACGAAGATACTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCACGAAGATACTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc #### Col17a1_ID10283_39 --> 2 - 1 Original Alignment ggGAAGGCGTACCAGGC-CCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg gtccgctggtgaggctcttgtctcacatcttgtttgtttctctgggtcagggGAGGGTGTACCAGGCCCCACCCG-GCCACCAGGATCCTTTTTGACTGACTCAggtatgttgggccgtatccaatcacaccttttcctatttcaacccaattgc Alignment from CESAR ggGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg gtccgctggtgaggctcttgtctcacatcttgtttgtttctctgggtcagggGAGGGTGTACCAGGCCCCACCCGGCCACCAGGATCCTTTTTGACTGACTCAggtatgttgggccgtatccaatcacaccttttcctatttcaacccaattgc Alignment from Spaln_aa2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG gtccgctggtgaggctcttgtctcacatcttgtttgtttctctgggtcagGGGAGGGTGTACCAGGCCCCACCCGGCCACCAGGATCCTTTTTGACTGACTCAGgtatgttgggccgtatccaatcacaccttttcctatttcaacccaattgc Alignment from Spaln_nt2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG gtccgctggtgaggctcttgtctcacatcttgtttgtttctctgggtcagGGGAGGGTGTACCAGGCCCCACCCGGCCACCAGGATCCTTTTTGACTGACTCAGgtatgttgggccgtatccaatcacaccttttcctatttcaacccaattgc Alignment from Pairagon GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG gtccgctggtgaggctcttgtctcacatcttgtttgtttctctgggtcagGGGAGGGTGTACCAGGCCCCACCCGGCCACCAGGATCCTTTTTGACTGACTCAGgtatgttgggccgtatccaatcacaccttttcctatttcaacccaattgc Alignment from Exonerate_protein2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG gtccgctggtgaggctcttgtctcacatcttgtttgtttctctgggtcagGGGAGGGTGTACCAGGCCCCACCCGGCCACCAGGATCCTTTTTGACTGACTCAGgtatgttgggccgtatccaatcacaccttttcctatttcaacccaattgc Alignment from Exonerate_coding2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG gtccgctggtgaggctcttgtctcacatcttgtttgtttctctgggtcagGGGAGGGTGTACCAGGCCCCACCCGGCCACCAGGATCCTTTTTGACTGACTCAGgtatgttgggccgtatccaatcacaccttttcctatttcaacccaattgc Alignment from GeneWise GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG gtccgctggtgaggctcttgtctcacatcttgtttgtttctctgggtcagGGGAGGGTGTACCAGGCCCCACCCGGCCACCAGGATCCTTTTTGACTGACTCAGgtatgttgggccgtatccaatcacaccttttcctatttcaacccaattgc #### Col17a1_ID10296_26 --> 2 - 1 Original Alignment gtGACAAAGGACTCATG-GGACCACCAGGACCCAAAg ggcaaacccctacagggcttgccacacttacagtttctaatgaccaacaggtGACAAAGGACTCATACGGAC-ACCAGGACCCAAAggtacgaattgcccatggctgctcagcctttgttatggcctcttctgcaac Alignment from CESAR gtGACAAAGGACTCATGGGACCACCAGGACCCAAAg ggcaaacccctacagggcttgccacacttacagtttctaatgaccaacaggtGACAAAGGACTCATACGGACACCAGGACCCAAAggtacgaattgcccatggctgctcagcctttgttatggcctcttctgcaac Alignment from Spaln_aa2Genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaacccctacagggcttgccacacttacagtttctaatgaccaacagGTGACAAAGGACTCATACGGACACCAGGACCCAAAGgtacgaattgcccatggctgctcagcctttgttatggcctcttctgcaac Alignment from Spaln_nt2Genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaacccctacagggcttgccacacttacagtttctaatgaccaacagGTGACAAAGGACTCATACGGACACCAGGACCCAAAGgtacgaattgcccatggctgctcagcctttgttatggcctcttctgcaac Alignment from Pairagon GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaacccctacagggcttgccacacttacagtttctaatgaccaacagGTGACAAAGGACTCATACGGACACCAGGACCCAAAGgtacgaattgcccatggctgctcagcctttgttatggcctcttctgcaac Alignment from Exonerate_protein2genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaacccctacagggcttgccacacttacagtttctaatgaccaacagGTGACAAAGGACTCATACGGACACCAGGACCCAAAGgtacgaattgcccatggctgctcagcctttgttatggcctcttctgcaac Alignment from Exonerate_coding2genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaacccctacagggcttgccacacttacagtttctaatgaccaacagGTGACAAAGGACTCATACGGACACCAGGACCCAAAGgtacgaattgcccatggctgctcagcctttgttatggcctcttctgcaac Alignment from GeneWise ggcaaacccctacagggcttgccacacttacagtttctaatgaccaacaggtgacaaaggactcatacggacaccaggacccaaaggtacgaattgcccatggctgctcagcctttgttatggcctcttctgcaac #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTC-CGAGGTGACGTGGGACTTCCTGGTGTCAAAg ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcaggtGCCGTGGGTCCCCAAGGGCTCCCGAGGTG-CGTGGGACTACCTGGTGTCAAAggtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcaggtGCCGTGGGTCCCCAAGGGCTCCCGAGGTGCGTGGGACTACCTGGTGTCAAAggtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCCGAGGTGCGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCCGAGGTGCGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCT-CCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCCGAGGTG-CGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCCGAGGTGCGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from Exonerate_coding2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCCGAGGTGCGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from GeneWise GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCCGAGGTGCGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGAC-TGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACCTGGT-TCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACCTGGTTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACCTGGTTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACCTGGTTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACCTGGTTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACCTGGTTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACCTGGTTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACCTGGTTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt #### Coro1b_ID355_5 --> 0 - 0 Original Alignment GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTG-TTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGCTTCACCACGG-TTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from CESAR GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGCTTCACCACGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from Spaln_aa2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGCTTCACCACGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from Spaln_nt2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGCTTCACCACGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from Pairagon GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTG-TTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGCTTCACCAC-GGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from Exonerate_protein2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGCTTCACCACGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from Exonerate_coding2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGCTTCACCACGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from GeneWise GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGCTTCACCACGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcataggTTGGAGGTGACACCGCCGAC-CTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcataggTTGGAGGTGACACCGCCGACCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACACCGCCGACCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACACCGCCGACCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from Pairagon GTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACACCGCCGAC-CTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACACCGCCGACCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from Exonerate_coding2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACACCGCCGACCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc Alignment from GeneWise GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccatgtgcatgctgccctgctgatattttctttgaatcatagGTTGGAGGTGACACCGCCGACCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgtaagcagtcacaagcgctaatggtgggggtggggtataaagcttgtccc #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCAC-AAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACCAAGGTCA-AGTGCGTGCGGGTGACACAAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGggttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACCAAGGTCAAGTGCGTGCGGGTGACACAAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGggttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACCAAGGTCAAGTGCGTGCGGGTGACACAAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACCAAGGTCAAGTGCGTGCGGGTGACACAAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCA-CAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACCAAGGTCAA-GTGCGTGCGGGTGACACAAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACCAAGGTCAAGTGCGTGCGGGTGACACAAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACCAAGGTCAAGTGCGTGCGGGTGACACAAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACCAAGGTCAAGTGCGTGCGGGTGACACAAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGAT-GTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATG-CACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAggtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAggtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGAT-GTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAAT-GCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATCGTCAATGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACG-TCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagctCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGCTCATGCACTG-GACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACG------TCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagctCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGCTCATGCACTGGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTG------ACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGCTCATGCACTGGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACG-TCATGCAC-----CGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGCTCATGCACTGGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACG-TCATGC-----ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGCTCATGCACTGGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTG------ACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGCTCATGCACTGGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTG------ACGTCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGCTCATGCACTGGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACG------TCATGCACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcggggccacatgcaccagaggcacttcctgtacctgtccttcccagCTCCGACCACACCATATGCCGGCTCCGCCCTCAACCTGACCTTTGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGCTCATGCACTGGACCGTGACCTCACGGGAGGCGTGGATACACCGGCGAGTCTCAgtagacgggggtagggtgagagggccttgtcccacaatgatgtcacttcc #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTG-CTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCTGCCTGAGGA-GGACTGTAGCCCAGTGAATGCCAGGGTCACAggtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCTGCCTGAGGAGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCTGCCTGAGGAGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCTGCCTGAGGAGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTG-CTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCTGCCTGAGGA-GGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCTGCCTGAGGAGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCTGCCTGAGGAGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCTGCCTGAGGAGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAAC-GTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACCGTGGAGG-CCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACCGTGGAGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Spaln_aa2Genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACCGTGGAGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Spaln_nt2Genome GGCA---TGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACCGTGGAGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Pairagon GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAA-CGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACCGTGGA-GGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Exonerate_protein2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACCGTGGAGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Exonerate_coding2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACCGTGGAGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from GeneWise GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACCGTGGAGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGAT-GACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcaggaGGGCTGGAGACAGAGGATCGACTACG-CTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATagttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcaggaGGGCTGGAGACAGAGGATCGACTACGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATagttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATCGACTACGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATCGACTACGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Pairagon GAGGGCTGGAGACAGAGGAT-GACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATCGACTAC-GCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATCGACTACGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATCGACTACGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATCGACTACGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTGGCCCAGAAAGGA-CCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctaaggtaccatacagctgtcttctcttttacagagATAGCAGCCTGGCTAGCCCAGAAAGGACCCTATCTCAG-TGCCATTAATGCCTTTGGAATGCAGgtgaggtcccgacctctctgtccctccccatctcaccagtgccttcgtcc Alignment from CESAR agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctaaggtaccatacagctgtcttctcttttacagagATAGCAGCCTGGCTAGCCCAGAAAGGACCCTATCTCAGTGCCATTAATGCCTTTGGAATGCAGgtgaggtcccgacctctctgtccctccccatctcaccagtgccttcgtcc Alignment from Spaln_aa2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctaaggtaccatacagctgtcttctcttttacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCCTATCTCAGTGCCATTAATGCCTTTGGAATGCAGgtgaggtcccgacctctctgtccctccccatctcaccagtgccttcgtcc Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACC-TATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctaaggtaccatacagctgtcttctcttttacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCCTATCTCAG-TGCCATTAATGCCTTTGGAATGCAGgtgaggtcccgacctctctgtccctccccatctcaccagtgccttcgtcc Alignment from Pairagon AGATAGCAGCCTGGCTGGCCCAGAAAGGA-CCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctaaggtaccatacagctgtcttctcttttacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCCTATCTCAG-TGCCATTAATGCCTTTGGAATGCAGgtgaggtcccgacctctctgtccctccccatctcaccagtgccttcgtcc Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctaaggtaccatacagctgtcttctcttttacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCCTATCTCAGTGCCATTAATGCCTTTGGAATGCAGgtgaggtcccgacctctctgtccctccccatctcaccagtgccttcgtcc Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctaaggtaccatacagctgtcttctcttttacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCCTATCTCAGTGCCATTAATGCCTTTGGAATGCAGgtgaggtcccgacctctctgtccctccccatctcaccagtgccttcgtcc Alignment from GeneWise AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctaaggtaccatacagctgtcttctcttttacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCCTATCTCAGTGCCATTAATGCCTTTGGAATGCAGgtgaggtcccgacctctctgtccctccccatctcaccagtgccttcgtcc #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTC-ATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCCATCAAGG-TACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCCATCAAGGTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCCATCAAGGTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCCATCAAGGTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Pairagon CATTACCAGAAGGGTGT-CATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCCATCAAGG-TACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCCATCAAGGTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCCATCAAGGTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCCATCAAGGTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAAC-ACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagagGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACCACGTGGGGGG-ATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagagGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACCACGTGGGGGGATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACCACGTGGGGGGATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACCACGTGGGGGGATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAA-CACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACCACGTGGGGGG-ATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACCACGTGGGGGGATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACCACGTGGGGGGATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACCACGTGGGGGGATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCC-ACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCCACAGTGCGGG-GATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCCACAGTGCGGGGATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCCACAGTGCGGGGATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCCACAGTGCGGGGATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGG-CCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCCACAGTGCGGG-GATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCCACAGTGCGGGGATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCCACAGTGCGGGGATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCCACAGTGCGGGGATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTC-AGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ctgaatgaaggaaaggattgtaacactcatgagtcctttgtgctttacagGTTATTATGCAGGCCTTCCAGCC-TGAGGCACTACAGTGTTACGTTCCTGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGCCCAGCGGGCGGCGGGGAGGATGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGCTTGTACCGGgtaagtgcggtttgtggagctagagtatggaaacacaggcttaggcagtc Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ctgaatgaaggaaaggattgtaacactcatgagtcctttgtgctttacagGTTATTATGCAGGCCTTCCAGCCTGAGGCACTACAGTGTTACGTTCCTGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGCCCAGCGGGCGGCGGGGAGGATGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGCTTGTACCGGgtaagtgcggtttgtggagctagagtatggaaacacaggcttaggcagtc Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ctgaatgaaggaaaggattgtaacactcatgagtcctttgtgctttacagGTTATTATGCAGGCCTTCCAGCCTGAGGCACTACAGTGTTACGTTCCTGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGCCCAGCGGGCGGCGGGGAGGATGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGCTTGTACCGGgtaagtgcggtttgtggagctagagtatggaaacacaggcttaggcagtc Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ctgaatgaaggaaaggattgtaacactcatgagtcctttgtgctttacagGTTATTATGCAGGCCTTCCAGCCTGAGGCACTACAGTGTTACGTTCCTGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGCCCAGCGGGCGGCGGGGAGGATGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGCTTGTACCGGgtaagtgcggtttgtggagctagagtatggaaacacaggcttaggcagtc Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ctgaatgaaggaaaggattgtaacactcatgagtcctttgtgctttacagGTTATTATGCAGGCCTTCCAGCCTGAGGCACTACAGTGTTACGTTCCTGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGCCCAGCGGGCGGCGGGGAGGATGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGCTTGTACCGGgtaagtgcggtttgtggagctagagtatggaaacacaggcttaggcagtc Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ctgaatgaaggaaaggattgtaacactcatgagtcctttgtgctttacagGTTATTATGCAGGCCTTCCAGCCTGAGGCACTACAGTGTTACGTTCCTGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGCCCAGCGGGCGGCGGGGAGGATGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGCTTGTACCGGgtaagtgcggtttgtggagctagagtatggaaacacaggcttaggcagtc Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ctgaatgaaggaaaggattgtaacactcatgagtcctttgtgctttacagGTTATTATGCAGGCCTTCCAGCCTGAGGCACTACAGTGTTACGTTCCTGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGCCCAGCGGGCGGCGGGGAGGATGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGCTTGTACCGGgtaagtgcggtttgtggagctagagtatggaaacacaggcttaggcagtc Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ctgaatgaaggaaaggattgtaacactcatgagtcctttgtgctttacagGTTATTATGCAGGCCTTCCAGCCTGAGGCACTACAGTGTTACGTTCCTGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGCCCAGCGGGCGGCGGGGAGGATGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGCTTGTACCGGgtaagtgcggtttgtggagctagagtatggaaacacaggcttaggcagtc #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTT-CAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccaggcCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCCAAG-GGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATggtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccaggcCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCCAAGGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATggtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCCAAGGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCCAAGGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCCAAGGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCCAAGGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCCAAGGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCCAAGGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGA-AATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttgcttctactccaagatttactgtctactttccccgctttcccccacaggcATTATATTTAGTAAAGGACAATGTGT-GAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATggtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttgcttctactccaagatttactgtctactttccccgctttcccccacaggcATTATATTTAGTAAAGGACAATGTGTGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATggtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGACAATGTGTGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGACAATGTGTGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Pairagon GCATTATATTTAGTAAAGGA-AATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGACAATGTGT-GAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGACAATGTGTGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGACAATGTGTGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGACAATGTGTGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta #### Dagla_ID2767_4 --> 2 - 2 Original Alignment gaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTG-AGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGcg tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcaggaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGCAGAG-CACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGcggtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from CESAR gaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGcg tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcaggaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGCAGAGCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGcggtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Spaln_aa2Genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGCAGAGCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Spaln_nt2Genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGCAGAGCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Pairagon GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGCAGAGCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Exonerate_protein2genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGCAGAGCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Exonerate_coding2genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGCAGAGCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from GeneWise GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGCAGAGCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag #### Dak_ID2898_15 --> 1 - 0 Original Alignment gTATGGAAAGGCTGCA-CCAGGAGACAGGACAATG ctggctcccgtgtccttacacctaaagaaggaagctttgtcctttgataggTATGGAAAGGCTGCACCCAG-AGACAGGACAATGgtaagttccccttccccctttgagcctacaagccctaaggctcccctaag Alignment from CESAR gTATGGAAAGGCTGCACCAGGAGACAGGACAATG ctggctcccgtgtccttacacctaaagaaggaagctttgtcctttgataggTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagttccccttccccctttgagcctacaagccctaaggctcccctaag Alignment from Spaln_aa2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG ctggctcccgtgtccttacacctaaagaaggaagctttgtcctttgatagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagttccccttccccctttgagcctacaagccctaaggctcccctaag Alignment from Spaln_nt2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG ctggctcccgtgtccttacacctaaagaaggaagctttgtcctttgatagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagttccccttccccctttgagcctacaagccctaaggctcccctaag Alignment from Pairagon GTATGGAAAGGCTGCACCAGGAGACAGGACAATG ctggctcccgtgtccttacacctaaagaaggaagctttgtcctttgatagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagttccccttccccctttgagcctacaagccctaaggctcccctaag Alignment from Exonerate_protein2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG ctggctcccgtgtccttacacctaaagaaggaagctttgtcctttgatagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagttccccttccccctttgagcctacaagccctaaggctcccctaag Alignment from Exonerate_coding2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG ctggctcccgtgtccttacacctaaagaaggaagctttgtcctttgatagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagttccccttccccctttgagcctacaagccctaaggctcccctaag Alignment from GeneWise GTATGGAAAGGCTGCACCAGGAGACAGGACAATG ctggctcccgtgtccttacacctaaagaaggaagctttgtcctttgatagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtaagttccccttccccctttgagcctacaagccctaaggctcccctaag #### Dak_ID2899_14 --> 0 - 2 Original Alignment CTCTATGGCCTGTTCCTGACTGCAGCT-GCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa tgggtcccagccagctcagtgtaatcaacctgtcctacatccccatatagCTCTATGGCCTGTTCCTGACTGCATCTCGCAC-GCCTCTCAAAGCCAAGACTGACCTCCCGACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGaagtaattcagctccccacatcttaacagcaggggtgtgctggggaggtgac Alignment from CESAR CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa tgggtcccagccagctcagtgtaatcaacctgtcctacatccccatatagCTCTATGGCCTGTTCCTGACTGCATCTCGCACGCCTCTCAAAGCCAAGACTGACCTCCCGACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGaagtaattcagctccccacatcttaacagcaggggtgtgctggggaggtgac Alignment from Spaln_aa2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccagccagctcagtgtaatcaacctgtcctacatccccatatagCTCTATGGCCTGTTCCTGACTGCATCTCGCACGCCTCTCAAAGCCAAGACTGACCTCCCGACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaattcagctccccacatcttaacagcaggggtgtgctggggaggtgac Alignment from Spaln_nt2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccagccagctcagtgtaatcaacctgtcctacatccccatatagCTCTATGGCCTGTTCCTGACTGCATCTCGCACGCCTCTCAAAGCCAAGACTGACCTCCCGACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaattcagctccccacatcttaacagcaggggtgtgctggggaggtgac Alignment from Pairagon CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccagccagctcagtgtaatcaacctgtcctacatccccatatagCTCTATGGCCTGTTCCTGACTGCATCTCGCACGCCTCTCAAAGCCAAGACTGACCTCCCGACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaattcagctccccacatcttaacagcaggggtgtgctggggaggtgac Alignment from Exonerate_protein2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccagccagctcagtgtaatcaacctgtcctacatccccatatagCTCTATGGCCTGTTCCTGACTGCATCTCGCACGCCTCTCAAAGCCAAGACTGACCTCCCGACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaattcagctccccacatcttaacagcaggggtgtgctggggaggtgac Alignment from Exonerate_coding2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccagccagctcagtgtaatcaacctgtcctacatccccatatagCTCTATGGCCTGTTCCTGACTGCATCTCGCACGCCTCTCAAAGCCAAGACTGACCTCCCGACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaattcagctccccacatcttaacagcaggggtgtgctggggaggtgac Alignment from GeneWise CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccagccagctcagtgtaatcaacctgtcctacatccccatatagCTCTATGGCCTGTTCCTGACTGCATCTCGCACGCCTCTCAAAGCCAAGACTGACCTCCCGACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaattcagctccccacatcttaacagcaggggtgtgctggggaggtgac #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGA-TTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG gaaaaggaagtggcttgcaccttggaaattgtttctctattttcttacagccATTCAGGGCTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGACTTGTCTG-CCTGCTGCTGGAGAGGATGGGAGCCTCATCTGGGGCAgtaactaggagcaggtccgaagggacagactgatggggagggttgcaggc Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG gaaaaggaagtggcttgcaccttggaaattgtttctctattttcttacagccATTCAGGGCTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGACTTGTCTGCCTGCTGCTGGAGAGGATGGGAGCCTCATCTGGGGCAgtaactaggagcaggtccgaagggacagactgatggggagggttgcaggc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG gaaaaggaagtggcttgcaccttggaaattgtttctctattttcttacagCCATTCAGGGCTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGACTTGTCTGCCTGCTGCTGGAGAGGATGGGAGCCTCATCTGGGGCAgtaactaggagcaggtccgaagggacagactgatggggagggttgcaggc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG gaaaaggaagtggcttgcaccttggaaattgtttctctattttcttacagCCATTCAGGGCTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGACTTGTCTGCCTGCTGCTGGAGAGGATGGGAGCCTCATCTGGGGCAgtaactaggagcaggtccgaagggacagactgatggggagggttgcaggc Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGA-TTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG gaaaaggaagtggcttgcaccttggaaattgtttctctattttcttacagCCATTCAGGGCTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGACTTGTCTG-CCTGCTGCTGGAGAGGATGGGAGCCTCATCTGGGGCAgtaactaggagcaggtccgaagggacagactgatggggagggttgcaggc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG gaaaaggaagtggcttgcaccttggaaattgtttctctattttcttacagCCATTCAGGGCTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGACTTGTCTGCCTGCTGCTGGAGAGGATGGGAGCCTCATCTGGGGCAgtaactaggagcaggtccgaagggacagactgatggggagggttgcaggc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG gaaaaggaagtggcttgcaccttggaaattgtttctctattttcttacagCCATTCAGGGCTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGACTTGTCTGCCTGCTGCTGGAGAGGATGGGAGCCTCATCTGGGGCAgtaactaggagcaggtccgaagggacagactgatggggagggttgcaggc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG gaaaaggaagtggcttgcaccttggaaattgtttctctattttcttacagCCATTCAGGGCTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGACTTGTCTGCCTGCTGCTGGAGAGGATGGGAGCCTCATCTGGGGCAgtaactaggagcaggtccgaagggacagactgatggggagggttgcaggc #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTG-GAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcaggcTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGCGAACTGGGCA-CATAGCTGATGCTGCCATACGCTTGCTGggtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcaggcTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGCGAACTGGGCACATAGCTGATGCTGCCATACGCTTGCTGggtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGCGAACTGGGCACATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGCGAACTGGGCACATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTG-GAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGCGAACTGGGCA-CATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGCGAACTGGGCACATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGCGAACTGGGCACATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGCGAACTGGGCACATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAG-CTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCCTCCCAT-CTTTGAACTATTACACAAGGAGATGCTGGGTGGAggtaggcctattagtactttaggttaaaactccagtgaggataggcattat Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCCTCCCATCTTTGAACTATTACACAAGGAGATGCTGGGTGGAggtaggcctattagtactttaggttaaaactccagtgaggatactcctttt Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCCTCCCATCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggataggcattat Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCCTCCCATCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggataggcattat Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCCTCCCATCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggataggcattat Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCCTCCCATCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggataggcattat Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCCTCCCATCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggataggcattat Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCCTCCCATCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggataggcattat #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGA-GATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg tactttaggttaaaactccagtgaggatactccttttgggtctctcctagagATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGACGATGGGG-TCTTTTCTACTTCGGGCTCAATATCGAGACAggtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg tactttaggttaaaactccagtgaggatactccttttgggtctctcctagagATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGACGATGGGGTCTTTTCTACTTCGGGCTCAATATCGAGACAggtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGACGATGGGGTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGACGATGGGGTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGA-GATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGACGATGGGG-TCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGACGATGGGGTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGACGATGGGGTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGACGATGGGGTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAG-CCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGC-AGTGTCCTGTTCTGACTGTGGCCGCTCAggtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAG-CCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGC-AGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct #### Dpp3_ID739_14 --> 1 - 0 Original Alignment gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGAT-GTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcaggATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATCGTAATCT-TGTGAACTGGCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from CESAR gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcaggATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATCGTAATCTTGTGAACTGGCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from Spaln_aa2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATCGTAATCTTGTGAACTGGCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from Spaln_nt2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATCGTAATCTTGTGAACTGGCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from Pairagon GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGAT-GTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATCGTAATCT-TGTGAACTGGCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from Exonerate_protein2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATCGTAATCTTGTGAACTGGCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from Exonerate_coding2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATCGTAATCTTGTGAACTGGCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat Alignment from GeneWise GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG cactgagctgtccagattctgaaggtacccatcccacgccctccccgcagGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATCGTAATCTTGTGAACTGGCTCAACATGGTTCGGGCGGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCAACAGgtgagtgatgggacaggtgcatccctccaggccagataagcttaaactat #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAG-CGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagacGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCCGGGAGA-GCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagacGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCCGGGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCCGGGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCCGGGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCCGGGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCCGGGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCCGGGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCCGGGAGAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg #### Drap1_ID985_5 --> 1 - 0 Original Alignment ag gGGCCGGAAACCGGGCAGCAGCGGCAGG-AAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG aggtgagaagccaagacatggtctgcagactaactttccttctcttgcaggGGCCGTAAACCGGGGAGCAGTGGCAGGCAAGAACG-AGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from CESAR ag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG aggtagagagccaagacatggtctgcagactaactttccttctcttgcaggGGCCGTAAACCGGGGAGCAGTGGCAGGCAAGAACGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from Spaln_aa2Genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagaagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGCAAGAACGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from Spaln_nt2Genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagaagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGCAAGAACGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from Pairagon AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagaagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGCAAGAACGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from Exonerate_protein2genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagaagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGCAAGAACGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from Exonerate_coding2genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagaagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGCAAGAACGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from GeneWise AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagaagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGCAAGAACGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATG-CAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gG caagtgtttgaggggccctatttggacctatttttctttctattcattaggAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCCAGG-GGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAaggtagagagccaagacatggtctgcagctttccattttcttgcacttaggG Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gG caagtgtttgaggggccctatttggacctatttttctttctattcattaggAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCCAGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAaggtagagagccaagacatggtctgcagactaactttccttctcttgcaggG Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCCAGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcagctttccattttcttgcacttagGG Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCCAGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcagctttccattttcttgcacttagGG Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCCAGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcagctttccattttcttgcacttagGG Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCCAGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcagctttccattttcttgcacttagGG Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCCAGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcagctttccattttcttgcacttagGG Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCCAGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcagctttccattttcttgcacttagGG #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACC-TTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagtaAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCCTTGG-CATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagtaAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCCTTGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCCTTGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCCTTGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCCTTGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCCTTGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCCTTGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCCTTGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc #### Ehbp1l1_ID1221_14 --> 2 - 0 Original Alignment gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGC-CTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaaggtGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCCTGGGGG-AGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from CESAR gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaaggtGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCCTGGGGGAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from Spaln_aa2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCCTGGGGGAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from Spaln_nt2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCCTGGGGGAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from Pairagon GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCCTGGGGGAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from Exonerate_protein2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCCTGGGGGAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from Exonerate_coding2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCCTGGGGGAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from GeneWise GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCCTGGGGGAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc #### Ehbp1l1_ID1224_11 --> 1 - 0 Original Alignment cGATTATTTCTCCCTT-GATCCCCTCAACATCAAACAGAACAACAAGCAG aggacaccagggacatccatccattcctccatgttcccttttacttggagcGATTATTTCTCCCTTCGATCCCC-CAACATCAAACAGAACAACAAGCAGgtaagctgaggagggagctgtagactggaggtaagatccagttagggaga Alignment from CESAR cGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG aggacaccagggacatccatccattcctccatgttcccttttacttggagcGATTATTTCTCCCTTCGATCCCCCAACATCAAACAGAACAACAAGCAGgtaagctgaggagggagctgtagactggaggtaagatccagttagggaga Alignment from Spaln_aa2Genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG aggacaccagggacatccatccattcctccatgttcccttttacttggagCGATTATTTCTCCCTTCGATCCCCCAACATCAAACAGAACAACAAGCAGgtaagctgaggagggagctgtagactggaggtaagatccagttagggaga Alignment from Spaln_nt2Genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG aggacaccagggacatccatccattcctccatgttcccttttacttggagCGATTATTTCTCCCTTCGATCCCCCAACATCAAACAGAACAACAAGCAGgtaagctgaggagggagctgtagactggaggtaagatccagttagggaga Alignment from Pairagon CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG aggacaccagggacatccatccattcctccatgttcccttttacttggagCGATTATTTCTCCCTTCGATCCCCCAACATCAAACAGAACAACAAGCAGgtaagctgaggagggagctgtagactggaggtaagatccagttagggaga Alignment from Exonerate_protein2genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG aggacaccagggacatccatccattcctccatgttcccttttacttggagCGATTATTTCTCCCTTCGATCCCCCAACATCAAACAGAACAACAAGCAGgtaagctgaggagggagctgtagactggaggtaagatccagttagggaga Alignment from Exonerate_coding2genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG aggacaccagggacatccatccattcctccatgttcccttttacttggagCGATTATTTCTCCCTTCGATCCCCCAACATCAAACAGAACAACAAGCAGgtaagctgaggagggagctgtagactggaggtaagatccagttagggaga Alignment from GeneWise CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG aggacaccagggacatccatccattcctccatgttcccttttacttggagCGATTATTTCTCCCTTCGATCCCCCAACATCAAACAGAACAACAAGCAGgtaagctgaggagggagctgtagactggaggtaagatccagttagggaga #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCCAGCCAG-TCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGCTCCCTGTTGG-GTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGatgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGCTCCCTGTTGGGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGatgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGCTCCCTGTTGGGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGCTCCCTGTTGGGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Pairagon GCACCACCTACCCTGGTCAGCTCCAGCCAG-TCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGCTCCCTGTTGG-GTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGCTCCCTGTTGGGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGCTCCCTGTTGGGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGCTCCCTGTTGGGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTG-AACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGCAACCTAGCCC-TCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCacgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGCAACCTAGCCCTCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCacgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGCAACCTAGCCCTCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGCAACCTAGCCCTCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTG-AACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGCAACCTAGCCC-TCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Exonerate_protein2genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGCAACCTAGCCCTCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Exonerate_coding2genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGCAACCTAGCCCTCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGCAACCTAGCCCTCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac #### Ehbp1l1_ID1231_4 --> 0 - 0 Original Alignment GACCCTCATGTGGACCAGTATGAAACC-AAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCAGTATGAAACCCAAAG-GTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from CESAR GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCAGTATGAAACCCAAAGGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from Spaln_aa2Genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCAGTATGAAACCCAAAGGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from Spaln_nt2Genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCAGTATGAAACCCAAAGGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from Pairagon GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCAGTATGAAACCCAAAGGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from Exonerate_protein2genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCAGTATGAAACCCAAAGGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from Exonerate_coding2genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCAGTATGAAACCCAAAGGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from GeneWise GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCAGTATGAAACCCAAAGGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg #### Ehbp1l1_ID1232_3 --> 0 - 0 Original Alignment GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGC-ACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCCACTGCGG-ATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from CESAR GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCCACTGCGGATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Spaln_aa2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCCACTGCGGATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Spaln_nt2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCCACTGCGGATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Pairagon GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCCACTGCGGATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Exonerate_protein2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCCACTGCGGATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Exonerate_coding2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCCACTGCGGATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from GeneWise GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCCACTGCGGATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCT-GAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagggGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCT-TTTTGTGCTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCACtggtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagggGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTTTTTGTGCTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCACtggtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTTTTTGTGCTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTTTTTGTGCTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCT-GAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCT-TTTTGTGCTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTTTTTGTGCTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTTTTTGTGCTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ggagttatgtccttaactttctcctccattcctgtttgtccatttcacagGGGATTTCCTCATTGTTGACCCTATTGAAGAAGGTGAAAAAGTGAAGGCTCGAGATCTTTTTGTGCTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCACTGgtgagatggtcttcctcagccaccctctggcttctggggagagattatcc #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAG-GAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAAGCGAACTTCAGG-ACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAAGCGAACTTCAGGACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAAGCGAACTTCAGGACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAAGCGAACTTCAGGACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAG-GAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAAGCGAACTTCAGG-ACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAAGCGAACTTCAGGACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAAGCGAACTTCAGGACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttccgatgcaacgaagtaagtataatgtgtctgtcctccatcctgcagGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAGAAAGAAAAAAAGCGAACTTCAGGACGCCTGAAGAATCAAGAAAAGAAGgtgagggtgggtcattgatgggttctaaatagtgtctccaaactggacct #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCA-TATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCACTATT-GAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGaggtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCACTATTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGaggtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCACTATTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCACTATTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCACTATTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCACTATTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCACTATTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gttgtccctcttaaggtaaacattaaatcactggcatttctactctccagGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCACTATTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAGgtatgtcagttaagacccttacttttatagttagcataatgtttctgttc #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAG-GAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagaaGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGCGAGCTGC-TAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGgtgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagaaGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGCGAGCTGCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGgtgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGCGAGCTGCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGCGAGCTGCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAG-GAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGCGAGCTG-CTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGCGAGCTGCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGCGAGCTGCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGCGAGCTGCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCTGATGGTGTT-CGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ggtagtcttgagagagatccctttcctatttggtgtctgttctttttcagcCTTGCTGTTCATCCTGATGGTGTTCCGTGTAG-TTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgacttcaagcaggatactgagcagataagatgagataacaggtcagct Alignment from CESAR cCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ggtagtcttgagagagatccctttcctatttggtgtctgttctttttcagcCTTGCTGTTCATCCTGATGGTGTTCCGTGTAGTTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgacttcaagcaggatactgagcagataagatgagataacaggtcagct Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ggtagtcttgagagagatccctttcctatttggtgtctgttctttttcagCCTTGCTGTTCATCCTGATGGTGTTCCGTGTAGTTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgacttcaagcaggatactgagcagataagatgagataacaggtcagct Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ggtagtcttgagagagatccctttcctatttggtgtctgttctttttcagCCTTGCTGTTCATCCTGATGGTGTTCCGTGTAGTTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgacttcaagcaggatactgagcagataagatgagataacaggtcagct Alignment from Pairagon CCTTGCTGTTCACCCTGATGGTGTT-CGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ggtagtcttgagagagatccctttcctatttggtgtctgttctttttcagCCTTGCTGTTCATCCTGATGGTGTTCCGTGTAG-TTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgacttcaagcaggatactgagcagataagatgagataacaggtcagct Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ggtagtcttgagagagatccctttcctatttggtgtctgttctttttcagCCTTGCTGTTCATCCTGATGGTGTTCCGTGTAGTTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgacttcaagcaggatactgagcagataagatgagataacaggtcagct Alignment from Exonerate_coding2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ggtagtcttgagagagatccctttcctatttggtgtctgttctttttcagCCTTGCTGTTCATCCTGATGGTGTTCCGTGTAGTTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgacttcaagcaggatactgagcagataagatgagataacaggtcagct Alignment from GeneWise CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ggtagtcttgagagagatccctttcctatttggtgtctgttctttttcagCCTTGCTGTTCATCCTGATGGTGTTCCGTGTAGTTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgacttcaagcaggatactgagcagataagatgagataacaggtcagct #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGT-CGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCCGAAGTG-CTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAggtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCCGAAGTGCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAggtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCCGAAGTGCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCCGAAGTGCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGT-CGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCCGAAGTG-CTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCCGAAGTGCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCCGAAGTGCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCCGAAGTGCTCAGATTCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg #### Eml3_ID2516_15 --> 0 - 0 Original Alignment TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCC-CAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCCAGAATCGCT-CCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAAGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from CESAR TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCCAGAATCGCTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAAGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Spaln_aa2Genome TTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGGTAAGTGCTGTCCTCCCTGTGCACCCCtgCAGGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCCAGAATCGCTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAAGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Spaln_nt2Genome TTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGGTAAGTGCTGTCCTCCCTGTGCACCCCTGCAGGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCCAGAATCGCTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAAGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Pairagon TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGT-CCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCCAGAATCGC-TCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAAGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Exonerate_protein2genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCCAGAATCGCTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAAGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Exonerate_coding2genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCCAGAATCGCTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAAGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from GeneWise TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCCAGAATCGCTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAAGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATG-ATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagatGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGCATCTACATCT-TAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATG-ATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagatGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGCATCTACATC-TTAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGCATCTACATCTTAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGCATCTACATCTTAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATG-ATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGCATCTACATCT-TAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGCATCTACATCTTAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from Exonerate_coding2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGCATCTACATCTTAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGCATCTACATCTTAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGACTTT-GGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACC-GTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTCTAT-GCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCTATCGCCCGCATCT-CTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCaggttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCTATCGCCCGCATCTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCaggttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCTATCGCCCGCATCTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCTATCGCCCGCATCTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTTCTAT-GCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCTATCGCCCGCATC-TCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCTATCGCCCGCATCTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCTATCGCCCGCATCTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAGG-- gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGATGCTCAGCTTCTATCGCCCGCATCTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGGTTgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATC-CCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctaggTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCCATGCACA-TGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctaggTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCCATGCACATGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCCATGCACATGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCCATGCACATGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATAT-CCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCCATGCACA-TGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCCATGCACATGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCCATGCACATGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCCATGCACATGATCACGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg #### Fads2_ID2675_9 --> 1 - 0 Original Alignment gTTCCTGGAGAGCCAC-TGGTTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacaggTTCCTGGAGAGCCACCTGGT-TGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from CESAR gTTCCTGGAGAGCCACTGGTTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacaggTTCCTGGAGAGCCACCTGGTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from Spaln_aa2Genome GTTCCTGGAGAGCCACTGGTTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACCTGGTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from Spaln_nt2Genome GTTCCTGGAGAGCCACTGGTTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACCTGGTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from Pairagon GTTCCTGGAGAGCCACTGGTTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACCTGGTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from Exonerate_protein2genome GTTCCTGGAGAGCCACTGGTTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACCTGGTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from Exonerate_coding2genome GTTCCTGGAGAGCCACTGGTTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACCTGGTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from GeneWise GTTCCTGGAGAGCCACTGGTTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACCTGGTTGTGTGGGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTC-TTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCCTTCCTTC-GGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCCTTCCTTCGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCCTTCCTTCGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCCTTCCTTCGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCCTTCCTTCGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCCTTCCTTCGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCCTTCCTTCGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCCTTCCTTCGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGG-ACACTGCTCCTCTTTGTTGCTGTCag cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGCACACTGC-CCTCTTTGTTGCTGTCaggtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGCACACTGCCCTCTTTGTTGCTGTCaggtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGCACACTGCCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGCACACTGCCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGG-ACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGCACACTGC-CCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGCACACTGCCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGCACACTGCCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGCACACTGCCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATG-AACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaccctaatcaaggatgctgtgcagcctcaccttgtgttgcaggGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGCAACCACA-CCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtaggcactggaaagcctgatgggagtatatactagccatggagggacca Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaccctaatcaaggatgctgtgcagcctcaccttgtgttgcaggGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGCAACCACACCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtaggcactggaaagcctgatgggagtatatactagccatggagggacca Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaccctaatcaaggatgctgtgcagcctcaccttgtgttgcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGCAACCACACCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtaggcactggaaagcctgatgggagtatatactagccatggagggacca Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaccctaatcaaggatgctgtgcagcctcaccttgtgttgcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGCAACCACACCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtaggcactggaaagcctgatgggagtatatactagccatggagggacca Alignment from Pairagon GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATG-AACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaccctaatcaaggatgctgtgcagcctcaccttgtgttgcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGCAACCACA-CCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtaggcactggaaagcctgatgggagtatatactagccatggagggacca Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaccctaatcaaggatgctgtgcagcctcaccttgtgttgcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGCAACCACACCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtaggcactggaaagcctgatgggagtatatactagccatggagggacca Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaccctaatcaaggatgctgtgcagcctcaccttgtgttgcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGCAACCACACCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtaggcactggaaagcctgatgggagtatatactagccatggagggacca Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaccctaatcaaggatgctgtgcagcctcaccttgtgttgcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGCAACCACACCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtaggcactggaaagcctgatgggagtatatactagccatggagggacca #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTC-AATTTCCAGATTGAGCACca gtcaaggttctaagcaagttctctcccttactctttccacccttgcctagTTGGCAGCCACCTGCAATGTGGAGTCTTCGCTCTTCATTGACTGGTTCAGTGGGCACCTCCAATT-CCAGATTGAGCACcagtaagggtggcctggagggcttgctggctgagtccaaagctagggctcag Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gtcaaggttctaagcaagttctctcccttactctttccacccttgcctagTTGGCAGCCACCTGCAATGTGGAGTCTTCGCTCTTCATTGACTGGTTCAGTGGGCACCTCCAATTCCAGATTGAGCACcagtaagggtggcctggagggcttgctggctgagtccaaagctagggctcag Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gtcaaggttctaagcaagttctctcccttactctttccacccttgcctagTTGGCAGCCACCTGCAATGTGGAGTCTTCGCTCTTCATTGACTGGTTCAGTGGGCACCTCCAATTCCAGATTGAGCACCAgtaagggtggcctggagggcttgctggctgagtccaaagctagggctcag Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gtcaaggttctaagcaagttctctcccttactctttccacccttgcctagTTGGCAGCCACCTGCAATGTGGAGTCTTCGCTCTTCATTGACTGGTTCAGTGGGCACCTCCAATTCCAGATTGAGCACCAgtaagggtggcctggagggcttgctggctgagtccaaagctagggctcag Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gtcaaggttctaagcaagttctctcccttactctttccacccttgcctagTTGGCAGCCACCTGCAATGTGGAGTCTTCGCTCTTCATTGACTGGTTCAGTGGGCACCTCCAATTCCAGATTGAGCACCAgtaagggtggcctggagggcttgctggctgagtccaaagctagggctcag Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gtcaaggttctaagcaagttctctcccttactctttccacccttgcctagTTGGCAGCCACCTGCAATGTGGAGTCTTCGCTCTTCATTGACTGGTTCAGTGGGCACCTCCAATTCCAGATTGAGCACCAgtaagggtggcctggagggcttgctggctgagtccaaagctagggctcag Alignment from Exonerate_coding2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gtcaaggttctaagcaagttctctcccttactctttccacccttgcctagTTGGCAGCCACCTGCAATGTGGAGTCTTCGCTCTTCATTGACTGGTTCAGTGGGCACCTCCAATTCCAGATTGAGCACCAgtaagggtggcctggagggcttgctggctgagtccaaagctagggctcag Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gtcaaggttctaagcaagttctctcccttactctttccacccttgcctagTTGGCAGCCACCTGCAATGTGGAGTCTTCGCTCTTCATTGACTGGTTCAGTGGGCACCTCCAATTCCAGATTGAGCACCAgtaagggtggcctggagggcttgctggctgagtccaaagctagggctcag #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGT-GTCATGGAACCCCAGCTGATGCAGac agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTCGTCATGGAAC-CCAGCTGATGCAGacgtgagtgtcctctcaccttgcagaactagccatgctgtataccgtatcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGT-GTCATGGAACCCCAGCTGATGCAGac agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTCGTCATGGAAC-CCAGCTGATGCAGacgtgagtgtcctctcaccttgcagaactagccatgctgtatcacctcttct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTCGTCATGGAACCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtataccgtatcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTCGTCATGGAACCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtataccgtatcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGT-GTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTCGTCATGGAA-CCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtataccgtatcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTCGTCATGGAACCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtataccgtatcct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTCGTCATGGAACCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtataccgtatcct Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC agagttcattatctttaggccaagtccactttattttcatttccctctagACTGCCGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTCGTCATGGAACCCAGCTGATGCAGACgtgagtgtcctctcaccttgcagaactagccatgctgtataccgtatcct #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGC-AGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCCAGGG-GCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCCAGGGGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCCAGGGGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCCAGGGGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCCAGGGGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCCAGGGGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Exonerate_coding2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCCAGGGGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from GeneWise CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctCAGGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCCAGGGGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg #### Fgf8_ID9567_2 --> 1 - 0 Original Alignment gCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccaggTTGTTGCAATTGCTGCGTTCTCT-CCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from CESAR gCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccaggTTGTTGCAATTGCTGCGTTCTCTCCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from Spaln_aa2Genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccagGTTGTTGCAATTGCTGCGTTCTCTCCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from Spaln_nt2Genome GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccagGTTGTTGCAATTGCTGCGTTCTCT-CCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from Pairagon GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccagGTTGTTGCAATTGCTGCGTTCTCT-CCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from Exonerate_protein2genome gccccctccactccatgtgcctctttccgcccggttctttgccttgccaggttgttgcaattgctgcgttctctcctccaagcccaggtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from Exonerate_coding2genome gccccctccactccatgtgcctctttccgcccggttctttgccttgccaggttgttgcaattgctgcgttctctcctccaagcccaggtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from GeneWise gccccctccactccatgtgcctctttccgcccggttctttgccttgccaggttgttgcaattgctgcgttctctcctccaagcccaggtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAG-GAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagacTCTCAGGTGGACGACATGGATGTGGACTTAGATAAACGAGTTTC-CCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGaggtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagt Alignment from CESAR acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagacTCTCAGGTGGACGACATGGATGTGGACTTAGATAAACGAGTTTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGaggtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagg Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAACGAGTTTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagt Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAACGAGTTTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagt Alignment from Pairagon ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAG-GAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAACGAGTTTC-CCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagt Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAACGAGTTTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagt Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAACGAGTTTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagt Alignment from GeneWise ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caagatggtctttcatgcacacacaacgcagctgcctttctgtcttgcagACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAACGAGTTTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaaatgtggggtgcatgagaccaagaataaaacactcttagtttagagt #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGAT-GTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATCGTCAGAGACC-ATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from CESAR AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATCGTCAGAGACCATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Spaln_aa2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATCGTCAGAGACCATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Spaln_nt2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATCGTCAGAGACCATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Pairagon AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGAT-GTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATCGTCAGAGACC-ATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Exonerate_protein2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATCGTCAGAGACCATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Exonerate_coding2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATCGTCAGAGACCATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from GeneWise AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATCGTCAGAGACCATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCG-TCAGTCCACTCCCTGGATGGCTTCcg cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGCTCAGTCCACT-CCTGGATGGCTTCcggtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGCTCAGTCCACTCCTGGATGGCTTCcggtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGCTCAGTCCACTCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGCTCAGTCCACTCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCG-TCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGCTCAGTCCACT-CCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGCTCAGTCCACTCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGCTCAGTCCACTCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from GeneWise TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGCTCAGTCCACTCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGAC-AGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACCAGCAGCCTAC-ACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgggtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACCAGCAGCCTACACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgggtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACCAGCAGCCTACACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACCAGCAGCCTACACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGA-CAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACCAGCAGCCTA-CACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACCAGCAGCCTACACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACCAGCAGCCTACACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAGATGGGACAGAGTTTGACCAGCAGCCTACACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAA-GTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagggACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAACGTGGATC-GGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagggACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAACGTGGATCGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAACGTGGATCGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAACGTGGATCGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAA-GTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAACGTGGATC-GGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAACGTGGATCGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAACGTGGATCGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAACGTGGATCGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca #### Ganab_ID2475_14 --> 2 - 0 Original Alignment gcTCAGCTAGTTACCCTGACTTCACT-AATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG agcagtcaaagaggtagagatattttgtttttctctttttaactttccaggcTCAGCTAGTTACCCTGACTTCACTCAATCCAA-GATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaacgaagactatccatatgtcctctgtcttttgtaatttgccttcatg Alignment from CESAR gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG agcagtcaaagaggtagagatattttgtttttctctttttaactttccaggcTCAGCTAGTTACCCTGACTTCACTCAATCCAAGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaacgaagactatccatatgtcctctgtcttttgtaatttgccttcatg Alignment from Spaln_aa2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG agcagtcaaagaggtagagatattttgtttttctctttttaactttccagGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaacgaagactatccatatgtcctctgtcttttgtaatttgccttcatg Alignment from Spaln_nt2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG agcagtcaaagaggtagagatattttgtttttctctttttaactttccagGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaacgaagactatccatatgtcctctgtcttttgtaatttgccttcatg Alignment from Pairagon GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG agcagtcaaagaggtagagatattttgtttttctctttttaactttccagGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaacgaagactatccatatgtcctctgtcttttgtaatttgccttcatg Alignment from Exonerate_protein2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG agcagtcaaagaggtagagatattttgtttttctctttttaactttccagGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaacgaagactatccatatgtcctctgtcttttgtaatttgccttcatg Alignment from Exonerate_coding2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG agcagtcaaagaggtagagatattttgtttttctctttttaactttccagGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaacgaagactatccatatgtcctctgtcttttgtaatttgccttcatg Alignment from GeneWise GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG agcagtcaaagaggtagagatattttgtttttctctttttaactttccagGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtaacgaagactatccatatgtcctctgtcttttgtaatttgccttcatg #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCT-AATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTCAATCTTTATG-TTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from CESAR GGTTCAGCTCCT-AATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTCAATCTTTATG-TTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTCAATCTTTATGTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTCAATCTTTATGTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from Pairagon GGTTCAGCTCCT-AATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTCAATCTTTATG-TTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTCAATCTTTATGTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTCAATCTTTATGTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG cgttgtcctctttttttccccccatacatctctttgactcctctttctagGGTTCAGCTCCTCAATCTTTATGTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACTTCTATGGCTTATATGTGgtgggtaacctggagatggaagttggcagacaaaggggaggacagtagtt #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTAT-CAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCCAGA-GCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCCAGAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCCAGAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCCAGAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCCAGAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCCAGAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCCAGAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCCAGAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTC-CAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCCAGCGTGGCG-AACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCCAGCGTGGCGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCCAGCGTGGCGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCCAGCGTGGCGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Pairagon ATCCCCGTGTT-CCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCCAGCGTGGC-GAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCCAGCGTGGCGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCCAGCGTGGCGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCCAGCGTGGCGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg #### Ganab_ID2485_24 --> 1 - 1 Original Alignment tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATC-ATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg tgccttcgctgcccatttctccaattgggtgtgtgtttttttttttccagtTTAGCAGACCCCAAGGGCCACCTGGAGACACCTATTTGGATTGAGCGAGTAGTCATCCATGGGGG-TGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAggtaaaagataggtctggcattgaaattgggaaaagaagcagcggtagggt Alignment from CESAR tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg tgccttcgctgcccatttctccaattgggtgtgtgtttttttttttccagtTTAGCAGACCCCAAGGGCCACCTGGAGACACCTATTTGGATTGAGCGAGTAGTCATCCATGGGGGTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAggtaaaagataggtctggcattgaaattgggaaaagaagcagcggtagggt Alignment from Spaln_aa2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgccttcgctgcccatttctccaattgggtgtgtgtttttttttttccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTATTTGGATTGAGCGAGTAGTCATCCATGGGGGTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaaaagataggtctggcattgaaattgggaaaagaagcagcggtagggt Alignment from Spaln_nt2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgccttcgctgcccatttctccaattgggtgtgtgtttttttttttccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTATTTGGATTGAGCGAGTAGTCATCCATGGGGGTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaaaagataggtctggcattgaaattgggaaaagaagcagcggtagggt Alignment from Pairagon TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgccttcgctgcccatttctccaattgggtgtgtgtttttttttttccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTATTTGGATTGAGCGAGTAGTCATCCATGGGGGTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaaaagataggtctggcattgaaattgggaaaagaagcagcggtagggt Alignment from Exonerate_protein2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgccttcgctgcccatttctccaattgggtgtgtgtttttttttttccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTATTTGGATTGAGCGAGTAGTCATCCATGGGGGTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaaaagataggtctggcattgaaattgggaaaagaagcagcggtagggt Alignment from Exonerate_coding2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgccttcgctgcccatttctccaattgggtgtgtgtttttttttttccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTATTTGGATTGAGCGAGTAGTCATCCATGGGGGTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaaaagataggtctggcattgaaattgggaaaagaagcagcggtagggt Alignment from GeneWise TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgccttcgctgcccatttctccaattgggtgtgtgtttttttttttccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTATTTGGATTGAGCGAGTAGTCATCCATGGGGGTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaaaagataggtctggcattgaaattgggaaaagaagcagcggtagggt #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACAT-GGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg tactgattgatttcctgcccataagtcactgacctgtgcctaccctgcagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACTGAACATCGGAAAGCCAG-GTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGCagtaagggcccagtgtctatgactctaactgaactcccaacttcctcaaca Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg tactgattgatttcctgcccataagtcactgacctgtgcctaccctgcagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACTGAACATCGGAAAGCCAGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGCagtaagggcccagtgtctatgactctaactgaactcccaacttcctcaaca Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG tactgattgatttcctgcccataagtcactgacctgtgcctaccctgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACTGAACATCGGAAAGCCAGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGCAgtaagggcccagtgtctatgactctaactgaactcccaacttcctcaaca Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG tactgattgatttcctgcccataagtcactgacctgtgcctaccctgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACTGAACATCGGAAAGCCAGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGCAgtaagggcccagtgtctatgactctaactgaactcccaacttcctcaaca Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACAT-GGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG tactgattgatttcctgcccataagtcactgacctgtgcctaccctgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACTGAACATCGGAAAGCCA-GGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGCAgtaagggcccagtgtctatgactctaactgaactcccaacttcctcaaca Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG tactgattgatttcctgcccataagtcactgacctgtgcctaccctgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACTGAACATCGGAAAGCCAGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGCAgtaagggcccagtgtctatgactctaactgaactcccaacttcctcaaca Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG tactgattgatttcctgcccataagtcactgacctgtgcctaccctgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACTGAACATCGGAAAGCCAGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGCAgtaagggcccagtgtctatgactctaactgaactcccaacttcctcaaca Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG tactgattgatttcctgcccataagtcactgacctgtgcctaccctgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACTGAACATCGGAAAGCCAGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGCAgtaagggcccagtgtctatgactctaactgaactcccaacttcctcaaca #### Gbf1_ID9799_18 --> 1 - 0 Original Alignment cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTT-ATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagcACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTCATTCACAGGT-GCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from CESAR cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagcACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTCATTCACAGGTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Spaln_aa2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTCATTCACAGGTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Spaln_nt2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTCATTCACAGGTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Pairagon CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTT-ATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTCATTCACAGG-TGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Exonerate_protein2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTCATTCACAGGTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Exonerate_coding2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTCATTCACAGGTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from GeneWise CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTCATTCACAGGTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAG-CTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCCTGG-ATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCCTGGATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCCTGGATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCCTGGATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Pairagon CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCCTGGATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCCTGGATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCCTGGATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCCTGGATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt #### Gbf1_ID9811_30 --> 2 - 0 Original Alignment gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAA-GTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccaggaGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGCGTCTACACAG-CCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from CESAR gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccaggaGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGCGTCTACACAGCCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Spaln_aa2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGCGTCTACACAGCCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Spaln_nt2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGCGTCTACACAGCCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Pairagon GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAA-GTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGCGTCTACACAG-CCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Exonerate_protein2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGCGTCTACACAGCCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Exonerate_coding2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGCGTCTACACAGCCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from GeneWise GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGCGTCTACACAGCCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTT-CTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcaggaATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCCTGGTGC-TGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcaggaATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCCTGGTGCTGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCCTGGTGCTGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCCTGGTGCTGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTT-CTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCCTGGTGC-TGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCCTGGTGCTGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCCTGGTGCTGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCCTGGTGCTGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTC-TTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCCTTGC-ACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCCTTGCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCCTTGCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCCTTGCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCCTTGCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCCTTGCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCCTTGCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCCTTGCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGG-TATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagtTATCACTCAGAAACTAATCTTGTCCGGCTATATGAAGA-ACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagtTATCACTCAGAAACTAATCTTGTCCGGCTATATGAAGAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGCTATATGAAGAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGCTATATGAAGAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGG-TATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGCTATATGAAG-AACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGCTATATGAAGAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGCTATATGAAGAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGCTATATGAAGAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac #### Gpha2_ID1505_2 --> 2 - 0 Original Alignment ccTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCC-CGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagcgTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCTCCCCGGTACTCTG-GCTGGTGGTCAGTGGCTATCGGCACAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from CESAR ccTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCC-CGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagcgTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCTCCCCGGTACTCT-GGCTGGTGGTCAGTGGCTATCGGCACAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from Spaln_aa2Genome CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCTCCCCGGTACTCTGGCTGGTGGTCAGTGGCTATCGGCACAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from Spaln_nt2Genome CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCTCCCCGGTACTCTGGCTGGTGGTCAGTGGCTATCGGCACAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from Pairagon CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTT-CCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCTCCCCGGTACTCTG-GCTGGTGGTCAGTGGCTATCGGCACAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from Exonerate_protein2genome CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCTCCCCGGTACTCTGGCTGGTGGTCAGTGGCTATCGGCACAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from Exonerate_coding2genome CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCTCCCCGGTACTCTGGCTGGTGGTCAGTGGCTATCGGCACAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga Alignment from GeneWise CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG gtaacccagccagcacggccttcatcagcatcttgcactttgaaccctagCGTTCAATGTGGCAGTGCGCAGTGACCGCCTCGGCACTTGTCAGGGATCCCATGTGGCACAGGCCTGTGTAGGTCACTGTGAGTCCAGTGCTTTCCCCTCCCCGGTACTCTGGCTGGTGGTCAGTGGCTATCGGCACAACATTACGTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAGgtaaggggcctgggcctgatggagctgcagatggggacccaggggcctga #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTAC-GACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATAGGG---GCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTACCGACTGGT-CAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATAGGG---GCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTACCGACTGGTCAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATA---GGGGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTACCGACTGGTCAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATAGGG---GCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTACCGACTGGTCAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTA-CGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATAGGG---GCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTACCGACTGGT-CAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATA---GGGGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTACCGACTGGTCAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATA---GGGGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTACCGACTGGTCAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctccataaagataacaacttttttctttagttagGGGACCAGTGTATGTCAGGTGGCTGCTATAGGG---GCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTACCGACTGGTCAATGTATCTGACCAGgtaacgactataataacttgcctccagctggccagggccctgccatcagc #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTG-GTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGCGTGA-TGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGCGTGATGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGCGTGATGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGCGTGATGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTG-GTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGCGTGA-TGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGCGTGATGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from Exonerate_coding2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGCGTGATGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from GeneWise GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGCGTGATGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt #### Hif1an_ID9068_6 --> 1 - 0 Original Alignment gTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATC-ACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacaggTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACTATCCACTGTGA-CTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from CESAR gTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacaggTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACTATCCACTGTGACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Spaln_aa2Genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACTATCCACTGTGACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Spaln_nt2Genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACTATCCACTGTGACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Pairagon GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCAT-CACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACTATCCACTGTG-ACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Exonerate_protein2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACTATCCACTGTGACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Exonerate_coding2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACTATCCACTGTGACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from GeneWise GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACTATCCACTGTGACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTC-CCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagatACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCCTACCCTTT-GTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagatACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCCTACCCTTTGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCCTACCCTTTGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCCTACCCTTTGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCCTACCCTTTGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCCTACCCTTTGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCCTACCCTTTGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCCTACCCTTTGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGAT-GTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagccACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGCGCTGATCGTCGCCATGG-GGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGAT-GTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagccACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGCGCTGATCGTCGCCATG-GGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGCGCTGATCGTCGCCATGGGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGCGCTGATCGTCGCCATGGGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGAT-GTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGCGCTGATCGTCGCCATGG-GGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGCGCTGATCGTCGCCATGGGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGCGCTGATCGTCGCCATGGGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGCGCTGATCGTCGCCATGGGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCAC-CTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcaggTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCCTGCCCC-GCACCTGCAGGACCGAGCCCAGAAACTTATGaagtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcaggTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCCTGCCCCGCACCTGCAGGACCGAGCCCAGAAACTTATGaagtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCCTGCCCCGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCCTGCCCCGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCCTGCCCCGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCCTGCCCCGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Exonerate_coding2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCCTGCCCCGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCCTGCCCCGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTG-CAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagcCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCCAGG-CCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagcCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCCAGGCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCCAGGCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCCAGGCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCCAGGCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Exonerate_protein2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCCAGGCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Exonerate_coding2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCCAGGCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from GeneWise -CATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCCAGGCCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTATGAGTCT-CCCTGTCCTGCAAGTCAATCAg aacttggtagacttttcttttttaaaccagtaccttagcaccatcctcagacCAGGTGCTGCTATGCTACTATGAGTCACCCCT-TCCTGCAAGTCAATCGggtgagttaagaggcagcaggagagaatggtgtttgtgttcttatccggaa Alignment from CESAR acCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg aacttggtagacttttcttttttaaaccagtaccttagcaccatcctcagacCAGGTGCTGCTATGCTACTATGAGTCACCCCTTCCTGCAAGTCAATCGggtgagttaagaggcagcaggagagaatggtgtttgtgttcttatccggaa Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagacttttcttttttaaaccagtaccttagcaccatcctcagACCAGGTGCTGCTATGCTACTATGAGTCACCCCTTCCTGCAAGTCAATCGGgtgagttaagaggcagcaggagagaatggtgtttgtgttcttatccggaa Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagacttttcttttttaaaccagtaccttagcaccatcctcagACCAGGTGCTGCTATGCTACTATGAGTCACCCCTTCCTGCAAGTCAATCGGgtgagttaagaggcagcaggagagaatggtgtttgtgttcttatccggaa Alignment from Pairagon ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagacttttcttttttaaaccagtaccttagcaccatcctcagACCAGGTGCTGCTATGCTACTATGAGTCACCCCTTCCTGCAAGTCAATCGGgtgagttaagaggcagcaggagagaatggtgtttgtgttcttatccggaa Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagacttttcttttttaaaccagtaccttagcaccatcctcagACCAGGTGCTGCTATGCTACTATGAGTCACCCCTTCCTGCAAGTCAATCGGgtgagttaagaggcagcaggagagaatggtgtttgtgttcttatccggaa Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagacttttcttttttaaaccagtaccttagcaccatcctcagACCAGGTGCTGCTATGCTACTATGAGTCACCCCTTCCTGCAAGTCAATCGGgtgagttaagaggcagcaggagagaatggtgtttgtgttcttatccggaa Alignment from GeneWise ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagacttttcttttttaaaccagtaccttagcaccatcctcagACCAGGTGCTGCTATGCTACTATGAGTCACCCCTTCCTGCAAGTCAATCGGgtgagttaagaggcagcaggagagaatggtgtttgtgttcttatccggaa #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAG-GAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaaggGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGCGAACTGG-GGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaaggGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGCGAACTGGGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGCGAACTGGGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGCGAACTGGGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAG-GAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGCGAACTGG-GGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGCGAACTGGGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGCGAACTGGGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggccctactactggcttgacagggcttgcttaatgtgctttgtcctgaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGCGAACTGGGGAGAAGAAGAGGAAGgtacgtggtttgcgaaaatgcgctccatgtgggatctgtgttgagctgag #### Incenp_ID2611_8 --> 1 - 0 Original Alignment gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAG-CCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttaggAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCCTGCC-GAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatccgaaca Alignment from CESAR gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttaggAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCCTGCCGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatccggatg Alignment from Spaln_aa2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCCTGCCGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatccgaaca Alignment from Spaln_nt2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCCTGCCGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatccgaaca Alignment from Pairagon GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCCTGCCGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatccgaaca Alignment from Exonerate_protein2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCCTGCCGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatccgaaca Alignment from Exonerate_coding2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCCTGCCGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatccgaaca Alignment from GeneWise GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCCTGCCGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatccgaaca #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTG-GAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa aagctgccatgtacatgtgatgcttacttggaaacgctttgttcccacaggcTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGCGAGA-CCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCaagtgagtcgaaatacccacctgggggttgtggtatggcctatccgttcctg Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa aagctgccatgtacatgtgatgcttacttggaaacgctttgttcccacaggcTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGCGAGACCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCaagtgagtcgaaatacccacctgggggttgtggtatggcctatccgttcctg Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagctgccatgtacatgtgatgcttacttggaaacgctttgttcccacagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGCGAGACCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgagtcgaaatacccacctgggggttgtggtatggcctatccgttcctg Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagctgccatgtacatgtgatgcttacttggaaacgctttgttcccacagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGCGAGACCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgagtcgaaatacccacctgggggttgtggtatggcctatccgttcctg Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagctgccatgtacatgtgatgcttacttggaaacgctttgttcccacagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGCGAGACCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgagtcgaaatacccacctgggggttgtggtatggcctatccgttcctg Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagctgccatgtacatgtgatgcttacttggaaacgctttgttcccacagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGCGAGACCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgagtcgaaatacccacctgggggttgtggtatggcctatccgttcctg Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagctgccatgtacatgtgatgcttacttggaaacgctttgttcccacagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGCGAGACCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgagtcgaaatacccacctgggggttgtggtatggcctatccgttcctg Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagctgccatgtacatgtgatgcttacttggaaacgctttgttcccacagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGCGAGACCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgagtcgaaatacccacctgggggttgtggtatggcctatccgttcctg #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGG-GGCTATGGCAAGCTGCTTATTGAGTTCa gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCATCTTAACTCTGCCTCCCTACCAGCGCCGGCGGCTACGGCA-GCTGCTTATTGAGTTCagtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from CESAR GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCATCTTAACTCTGCCTCCCTACCAGCGCCGGCGGCTACGGCAGCTGCTTATTGAGTTCagtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCATCTTAACTCTGCCTCCCTACCAGCGCCGGCGGCTACGGCAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCATCTTAACTCTGCCTCCCTACCAGCGCCGGCGGCTACGGCAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from Pairagon GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGG-GGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCATCTTAACTCTGCCTCCCTACCAGCGCCGGCGGCTACGGC-AGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCATCTTAACTCTGCCTCCCTACCAGCGCCGGCGGCTACGGCAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCATCTTAACTCTGCCTCCCTACCAGCGCCGGCGGCTACGGCAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gccttacccctaacctggcactcttgaaccccttctctcctgcattgcagGAAAAAGAGTCCACAGAGGATTACAACGTAGCCTGCATCTTAACTCTGCCTCCCTACCAGCGCCGGCGGCTACGGCAGCTGCTTATTGAGTTCAgtatgtatgtgctacctgaccaggagctggcggggcaagcctgggtgggt #### Kat5_ID1114_8 --> 0 - 0 Original Alignment GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGT-CTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCCTGGTGT-TGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from CESAR GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCCTGGTGTTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Spaln_aa2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCCTGGTGTTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Spaln_nt2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCCTGGTGTTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Pairagon GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGT-CTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCCTGGTGT-TGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Exonerate_protein2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCCTGGTGTTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Exonerate_coding2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCCTGGTGTTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from GeneWise GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCCTGGTGTTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATC-CAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagtcAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCCAATTAC-CAAGAAAGAGGCCCAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTCTCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagtcAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCCAATTACCAAGAAAGAGGCCCAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTCTCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCCAATTACCAAGAAAGAGGCCCAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTCTCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCCAATTACCAAGAAAGAGGCCCAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTCTCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCCAATTACCAAGAAAGAGGCCCAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTCTCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCCAATTACCAAGAAAGAGGCCCAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTCTCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCCAATTACCAAGAAAGAGGCCCAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTCTCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttgaggaagcctctggcattccctccgctgatgtctgctcttttgcagTCAACAAACGTCTGGATGAATGGGTGACCCATGAGCGGCTGGACTTACAGAAGATCCCAATTACCAAGAAAGAGGCCCAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCTGGCTCTCCCGAAAGAGAGGTGgtaagtaggttccccatttcatcttctctctctggcccctcccttcttgc #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTT-TTCTATGTCCATTACATTGACt gtctcctgacctgccctggctaaaactcttgttttgttttgtttttctagcgCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTCTTCTATG-CTATTACATTGACtgtaggccctgagcctggatggagtggggttgctagatagggttgaggaag Alignment from CESAR ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt gtctcctgacctgccctggctaaaactcttgttttgttttgtttttctagcgCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTCTTCTATGCTATTACATTGACtgtaggccctgagcctggatggagtggggttgctagatagggttgaggaag Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT gtctcctgacctgccctggctaaaactcttgttttgttttgtttttctagCGCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTCTTCTATGCTATTACATTGACTgtaggccctgagcctggatggagtggggttgctagatagggttgaggaag Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTT-TTCTATGTCCATTACATTGACT gtctcctgacctgccctggctaaaactcttgttttgttttgtttttctagCGCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTCTTCTATG-CTATTACATTGACTgtaggccctgagcctggatggagtggggttgctagatagggttgaggaag Alignment from Pairagon CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTT-TTCTATGTCCATTACATTGACT gtctcctgacctgccctggctaaaactcttgttttgttttgtttttctagCGCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTCTTCTATG-CTATTACATTGACTgtaggccctgagcctggatggagtggggttgctagatagggttgaggaag Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT gtctcctgacctgccctggctaaaactcttgttttgttttgtttttctagCGCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTCTTCTATGCTATTACATTGACTgtaggccctgagcctggatggagtggggttgctagatagggttgaggaag Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT gtctcctgacctgccctggctaaaactcttgttttgttttgtttttctagCGCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTCTTCTATGCTATTACATTGACTgtaggccctgagcctggatggagtggggttgctagatagggttgaggaag Alignment from GeneWise CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT gtctcctgacctgccctggctaaaactcttgttttgttttgtttttctagCGCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTCTTCTATGCTATTACATTGACTgtaggccctgagcctggatggagtggggttgctagatagggttgaggaag #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAG-GGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAACGGCACTTACC-TTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAggtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAACGGCACTTACCTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAggtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAACGGCACTTACCTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAACGGCACTTACCTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAG-GGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAACGGCACTTACC-TTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAACGGCACTTACCTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAACGGCACTTACCTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAACGGCACTTACCTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAG-GACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgggtgaatacttcactcgcccattccctcaatctttgaccttcccatagAAGATGGACAGAAACAAGCGATGGCG-GGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtataacttcactctctaaacatctctgtactgaagtaaagttcagacct Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgggtgaatacttcactcgcccattccctcaatctttgaccttcccatagAAGATGGACAGAAACAAGCGATGGCGGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtataacttcactctctaaacatctctgtactgaagtaaagttcagacct Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgggtgaatacttcactcgcccattccctcaatctttgaccttcccatagAAGATGGACAGAAACAAGCGATGGCGGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtataacttcactctctaaacatctctgtactgaagtaaagttcagacct Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgggtgaatacttcactcgcccattccctcaatctttgaccttcccatagAAGATGGACAGAAACAAGCGATGGCGGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtataacttcactctctaaacatctctgtactgaagtaaagttcagacct Alignment from Pairagon AAGATGGACAGAAACAAG-GACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgggtgaatacttcactcgcccattccctcaatctttgaccttcccatagAAGATGGACAGAAACAAGCGATGGCG-GGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtataacttcactctctaaacatctctgtactgaagtaaagttcagacct Alignment from Exonerate_protein2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgggtgaatacttcactcgcccattccctcaatctttgaccttcccatagAAGATGGACAGAAACAAGCGATGGCGGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtataacttcactctctaaacatctctgtactgaagtaaagttcagacct Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgggtgaatacttcactcgcccattccctcaatctttgaccttcccatagAAGATGGACAGAAACAAGCGATGGCGGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtataacttcactctctaaacatctctgtactgaagtaaagttcagacct Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgggtgaatacttcactcgcccattccctcaatctttgaccttcccatagAAGATGGACAGAAACAAGCGATGGCGGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtataacttcactctctaaacatctctgtactgaagtaaagttcagacct #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAG-TACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAACTACACCT-CCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAACTACACCTCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAACTACACCTCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAACTACACCTCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAG-TACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAACTACACCT-CCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAACTACACCTCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAACTACACCTCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaacctcatctggcttgatcttaggagaatttctgtttttctgaaaccagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAACTACACCTCCCCGCCCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtaagtgggtctgggtgggctggtggctctggggtggacagaaggacact #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCT-TTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAACTGGGCTCTTCAACT-ATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAACTGGGCTCTTCAACTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAACTGGGCTCTTCAACTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAACTGGGCTCTTCAACTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAACTGGGCTCTTCAACTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAACTGGGCTCTTCAACTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAACTGGGCTCTTCAACTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAACTGGGCTCTTCAACTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC-TTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG gtttcgctttcatccataaatgcaattccttctcaccgttccgattgcag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGCCACCTTAA-TGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAGgtaggaaagtaccctgttagactgagaaagccaaaagagaactaagaaca Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG gtttcgctttcatccataaatgcaattccttctcaccgttccgattgcag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGCCACCTTAATGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAGgtaggaaagtaccctgttagactgagaaagccaaaagagaactaagaaca Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG gtttcgctttcatccataaatgcaattccttctcaccgttccgattgcag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGCCACCTTAATGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAGgtaggaaagtaccctgttagactgagaaagccaaaagagaactaagaaca Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG gtttcgctttcatccataaatgcaattccttctcaccgttccgattgcag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGCCACCTTAATGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAGgtaggaaagtaccctgttagactgagaaagccaaaagagaactaagaaca Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG gtttcgctttcatccataaatgcaattccttctcaccgttccgattgcag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGCCACCTTAATGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAGgtaggaaagtaccctgttagactgagaaagccaaaagagaactaagaaca Alignment from Exonerate_protein2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG gtttcgctttcatccataaatgcaattccttctcaccgttccgaTTGCAGGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGCCACCTTAATGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAGgtaggaaagtaccctgttagactgagaaagccaaaagagaactaagaaca Alignment from Exonerate_coding2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG gtttcgctttcatccataaatgcaattccttctcaccgttccgaTTGCAGGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGCCACCTTAATGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAGgtaggaaagtaccctgttagactgagaaagccaaaagagaactaagaaca Alignment from GeneWise GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG gtttcgctttcatccataaatgcaattccttctcaccgttccgattgcagGTG------CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGCCACCTTAATGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAGgtaggaaagtaccctgttagactgagaaagccaaaagagaactaagaaca #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGAT-CTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgaaatgaaaaattttgcagtaatgttggtataaattggatctttatcagaTTGTCACTATGTGATCCTTGCTG-TTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCCTTATTGACTCTGGGAAAGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAaagtaagtgtccttagtgtaaatatgaaagtctaactttgcattctttggaa Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgaaatgaaaaattttgcagtaatgttggtataaattggatctttatcagaTTGTCACTATGTGATCCTTGCTGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCCTTATTGACTCTGGGAAAGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAaagtaagtgtccttagtgtaaatatgaaagtctaactttgcattctttggaa Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtaatgttggtataaattggatctttatcagATTGTCACTATGTGATCCTTGCTGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCCTTATTGACTCTGGGAAAGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtaagtgtccttagtgtaaatatgaaagtctaactttgcattctttggaa Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtaatgttggtataaattggatctttatcagATTGTCACTATGTGATCCTTGCTGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCCTTATTGACTCTGGGAAAGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtaagtgtccttagtgtaaatatgaaagtctaactttgcattctttggaa Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtaatgttggtataaattggatctttatcagATTGTCACTATGTGATCCTTGCTGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCCTTATTGACTCTGGGAAAGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtaagtgtccttagtgtaaatatgaaagtctaactttgcattctttggaa Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtaatgttggtataaattggatctttatcagATTGTCACTATGTGATCCTTGCTGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCCTTATTGACTCTGGGAAAGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtaagtgtccttagtgtaaatatgaaagtctaactttgcattctttggaa Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtaatgttggtataaattggatctttatcagATTGTCACTATGTGATCCTTGCTGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCCTTATTGACTCTGGGAAAGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtaagtgtccttagtgtaaatatgaaagtctaactttgcattctttggaa Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtaatgttggtataaattggatctttatcagATTGTCACTATGTGATCCTTGCTGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCCTTATTGACTCTGGGAAAGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtaagtgtccttagtgtaaatatgaaagtctaactttgcattctttggaa #### Klc2_ID852_14 --> 1 - 0 Original Alignment gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAG-AGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGCAGTGTCA-GGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from CESAR gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGCAGTGTCAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Spaln_aa2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGCAGTGTCAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Spaln_nt2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAG-AGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGCAGTGT-CAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Pairagon GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAG-AGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGCAGTGT-CAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Exonerate_protein2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGCAGTGTCAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Exonerate_coding2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGCAGTGTCAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from GeneWise GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGCAGTGTCAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGA-GGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGACGGACACC-CCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcaatct Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGACGGACACCCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcatcag Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGACGGACACCCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcaatct Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGACGGACACCCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcaatct Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGA-GGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGACGGACACC-CCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcaatct Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGACGGACACCCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcaatct Alignment from Exonerate_coding2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGACGGACACCCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcaatct Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGACGGACACCCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcaatct #### Klc2_ID856_10 --> 0 - 2 Original Alignment GATAAGCGCCGGGACAGCGCCCCCTATGGGGAG-TATGGCAGCTGGTACAAAGCCTGTAAAGTTGACag gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAACTATGGCA-CTGGTACAAAGCCTGCAAAGTTGACaggtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from CESAR GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACag gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAACTATGGCACTGGTACAAAGCCTGCAAAGTTGACaggtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Spaln_aa2Genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAACTATGGCACTGGTACAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Spaln_nt2Genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAACTATGGCACTGGTACAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Pairagon GATAAGCGCCGGGACAGCGCCCCCTATGGGGAG-TATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAACTATGGCA-CTGGTACAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Exonerate_protein2genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAACTATGGCACTGGTACAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Exonerate_coding2genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAACTATGGCACTGGTACAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from GeneWise GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAACTATGGCACTGGTACAAAGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc #### Klc2_ID857_9 --> 2 - 0 Original Alignment gaGAGAACAAGCCCATCTGGATGCAC-GCAGAGGAGCGCGAGGAGAGCAAG ctgattggagagttctgtgttgcaggcatccatttctcccttctttcaaggaGAGAATAAGCCCATCTGGATGCACCGCAGAGGAGC-TGAGGAGAGCAAAgtgagtagccatgggcagctgtcaggtgtagagcggctctgaggctggga Alignment from CESAR gaGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG ctgattggagagttctgtgttgcaggcatccatttctcccttctttcaaggaGAGAATAAGCCCATCTGGATGCACCGCAGAGGAGCTGAGGAGAGCAAAgtgagtagccatgggcagctgtcaggtgtagagcggctctgaggctggga Alignment from Spaln_aa2Genome GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG ctgattggagagttctgtgttgcaggcatccatttctcccttctttcaagGAGAGAATAAGCCCATCTGGATGCACCGCAGAGGAGCTGAGGAGAGCAAAgtgagtagccatgggcagctgtcaggtgtagagcggctctgaggctggga Alignment from Spaln_nt2Genome GAGAGAACAAGCCCATCTGGATGCAC-GCAGAGGAGCGCGAGGAGAGCAAG ctgattggagagttctgtgttgcaggcatccatttctcccttctttcaagGAGAGAATAAGCCCATCTGGATGCACCGCAGAGGAGC-TGAGGAGAGCAAAgtgagtagccatgggcagctgtcaggtgtagagcggctctgaggctggga Alignment from Pairagon GAGAGAACAAGCCCATCTGGATGCA-CGCAGAGGAGCGCGAGGAGAGCAAG ctgattggagagttctgtgttgcaggcatccatttctcccttctttcaagGAGAGAATAAGCCCATCTGGATGCACCGCAGAGGAGC-TGAGGAGAGCAAAgtgagtagccatgggcagctgtcaggtgtagagcggctctgaggctggga Alignment from Exonerate_protein2genome GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG ctgattggagagttctgtgttgcaggcatccatttctcccttctttcaagGAGAGAATAAGCCCATCTGGATGCACCGCAGAGGAGCTGAGGAGAGCAAAgtgagtagccatgggcagctgtcaggtgtagagcggctctgaggctggga Alignment from Exonerate_coding2genome GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG ctgattggagagttctgtgttgcaggcatccatttctcccttctttcaagGAGAGAATAAGCCCATCTGGATGCACCGCAGAGGAGCTGAGGAGAGCAAAgtgagtagccatgggcagctgtcaggtgtagagcggctctgaggctggga Alignment from GeneWise GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG ctgattggagagttctgtgttgcaggcatccatttctcccttctttcaagGAGAGAATAAGCCCATCTGGATGCACCGCAGAGGAGCTGAGGAGAGCAAAgtgagtagccatgggcagctgtcaggtgtagagcggctctgaggctggga #### Klc2_ID858_8 --> 0 - 1 Original Alignment GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATC-CTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCCTTACCCGTG-GCATGAAAAGGAGTTTGGCTCAGTCAATggtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from CESAR GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCCTTACCCGTGGCATGAAAAGGAGTTTGGCTCAGTCAATggtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Spaln_aa2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCCTTACCCGTGGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Spaln_nt2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCCTTACCCGTGGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Pairagon GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGAT-CCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCCTTACCCGTG-GCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Exonerate_protein2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCCTTACCCGTGGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Exonerate_coding2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCCTTACCCGTGGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from GeneWise GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCCTTACCCGTGGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCT-GAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTCGAGGAGGTGG-ATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTCGAGGAGGTGGATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTCGAGGAGGTGGATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTCGAGGAGGTGGATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCT-GAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTCGAGGAGGTGG-ATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTCGAGGAGGTGGATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Exonerate_coding2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTCGAGGAGGTGGATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTCGAGGAGGTGGATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag #### Ldb1_ID9697_3 --> 1 - 2 Original Alignment cCCAACTCCCATGTACCCA-CCTACATACCTGGAGCCTGGGATCgg gcagtaatttctcttccactgtgactcttcatctctctgtgcatttttagcCCAACTCCCATGTACCCACCCTACAT-CCTGGAGCCTGGGATCgggtaagtggattgcagcttgccaggaagcttttcctctgcatgcatctgag Alignment from CESAR cCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCgg gcagtaatttctcttccactgtgactcttcatctctctgtgcatttttagcCCAACTCCCATGTACCCACCCTACATCCTGGAGCCTGGGATCgggtaagtggattgcagcttgccaggaagcttttcctctgcatgcatctgag Alignment from Spaln_aa2Genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG gcagtaatttctcttccactgtgactcttcatctctctgtgcatttttagCCCAACTCCCATGTACCCACCCTACATCCTGGAGCCTGGGATCGGgtaagtggattgcagcttgccaggaagcttttcctctgcatgcatctgag Alignment from Spaln_nt2Genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG gcagtaatttctcttccactgtgactcttcatctctctgtgcatttttagCCCAACTCCCATGTACCCACCCTACATCCTGGAGCCTGGGATCGGgtaagtggattgcagcttgccaggaagcttttcctctgcatgcatctgag Alignment from Pairagon CCCAACTCCCATGTACCCA-CCTACATACCTGGAGCCTGGGATCGG gcagtaatttctcttccactgtgactcttcatctctctgtgcatttttagCCCAACTCCCATGTACCCACCCTACAT-CCTGGAGCCTGGGATCGGgtaagtggattgcagcttgccaggaagcttttcctctgcatgcatctgag Alignment from Exonerate_protein2genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG gcagtaatttctcttccactgtgactcttcatctctctgtgcatttttagCCCAACTCCCATGTACCCACCCTACATCCTGGAGCCTGGGATCGGgtaagtggattgcagcttgccaggaagcttttcctctgcatgcatctgag Alignment from Exonerate_coding2genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG gcagtaatttctcttccactgtgactcttcatctctctgtgcatttttagCCCAACTCCCATGTACCCACCCTACATCCTGGAGCCTGGGATCGGgtaagtggattgcagcttgccaggaagcttttcctctgcatgcatctgag Alignment from GeneWise CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG gcagtaatttctcttccactgtgactcttcatctctctgtgcatttttagCCCAACTCCCATGTACCCACCCTACATCCTGGAGCCTGGGATCGGgtaagtggattgcagcttgccaggaagcttttcctctgcatgcatctgag #### Loxl4_ID8570_5 --> 1 - 0 Original Alignment gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATT-CACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacaggCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCCACA-GGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from CESAR gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacaggCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCCACAGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Spaln_aa2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCCACAGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Spaln_nt2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCCACAGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Pairagon GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCCACAGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Exonerate_protein2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCCACAGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Exonerate_coding2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCCACAGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from GeneWise GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCCACAGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGC-ACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCCACTCACT-CAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCCACTCACTCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCCACTCACTCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCCACTCACTCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTG-CACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCCACTCACT-CAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCCACTCACTCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCCACTCACTCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCCACTCACTCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga #### Ltbp3_ID1252_4 --> 0 - 1 Original Alignment TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGC-AAGTGTCACAAGTGCCCACAGCTTCAGt ccagtgggagcggggcattcagtgattcactgaactgtctgtccttgcagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCCAAGT-TCACAAGTGCCCACAGCTTCAGtgtgagcgcctggcctggcttagtgtggtatcccccactgagtgacagtgc Alignment from CESAR TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGt ccagtgggagcggggcattcagtgattcactgaactgtctgtccttgcagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCCAAGTTCACAAGTGCCCACAGCTTCAGtgtgagcgcctggcctggcttagtgtggtatcccccactgagtgacagtgc Alignment from Spaln_aa2Genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccagtgggagcggggcattcagtgattcactgaactgtctgtccttgcagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCCAAGTTCACAAGTGCCCACAGCTTCAGTgtgagcgcctggcctggcttagtgtggtatcccccactgagtgacagtgc Alignment from Spaln_nt2Genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccagtgggagcggggcattcagtgattcactgaactgtctgtccttgcagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCCAAGTTCACAAGTGCCCACAGCTTCAGTgtgagcgcctggcctggcttagtgtggtatcccccactgagtgacagtgc Alignment from Pairagon TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccagtgggagcggggcattcagtgattcactgaactgtctgtccttgcagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCCAAGTTCACAAGTGCCCACAGCTTCAGTgtgagcgcctggcctggcttagtgtggtatcccccactgagtgacagtgc Alignment from Exonerate_protein2genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccagtgggagcggggcattcagtgattcactgaactgtctgtccttgcagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCCAAGTTCACAAGTGCCCACAGCTTCAGTgtgagcgcctggcctggcttagtgtggtatcccccactgagtgacagtgc Alignment from Exonerate_coding2genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccagtgggagcggggcattcagtgattcactgaactgtctgtccttgcagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCCAAGTTCACAAGTGCCCACAGCTTCAGTgtgagcgcctggcctggcttagtgtggtatcccccactgagtgacagtgc Alignment from GeneWise TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT ccagtgggagcggggcattcagtgattcactgaactgtctgtccttgcagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCCAAGTTCACAAGTGCCCACAGCTTCAGTgtgagcgcctggcctggcttagtgtggtatcccccactgagtgacagtgc #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAAC-CCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gcttgctgccatgttatagcctcgactattcttgcctttggtctccatagatATCAACGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCCTGGCTCTT-TCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCTTTCCGCACACAGTGCATTggtaagtttggggactcctggtcttgtggattcacaaggctggatgggagg Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gcttgctgccatgttatagcctcgactattcttgcctttggtctccatagatATCAACGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCCTGGCTCTTTCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCTTTCCGCACACAGTGCATTggtaagtttggggactcctggtcttgtggattcacaaggctggatgggagg Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gcttgctgccatgttatagcctcgactattcttgcctttggtctccatagATATCAACGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCCTGGCTCTTTCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCTTTCCGCACACAGTGCATTGgtaagtttggggactcctggtcttgtggattcacaaggctggatgggagg Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gcttgctgccatgttatagcctcgactattcttgcctttggtctccatagATATCAACGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCCTGGCTCTTTCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCTTTCCGCACACAGTGCATTGgtaagtttggggactcctggtcttgtggattcacaaggctggatgggagg Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAA-CCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gcttgctgccatgttatagcctcgactattcttgcctttggtctccatagATATCAACGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCCTGGCTCTT-TCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCTTTCCGCACACAGTGCATTGgtaagtttggggactcctggtcttgtggattcacaaggctggatgggagg Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gcttgctgccatgttatagcctcgactattcttgcctttggtctccatagATATCAACGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCCTGGCTCTTTCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCTTTCCGCACACAGTGCATTGgtaagtttggggactcctggtcttgtggattcacaaggctggatgggagg Alignment from Exonerate_coding2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gcttgctgccatgttatagcctcgactattcttgcctttggtctccatagATATCAACGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCCTGGCTCTTTCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCTTTCCGCACACAGTGCATTGgtaagtttggggactcctggtcttgtggattcacaaggctggatgggagg Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gcttgctgccatgttatagcctcgactattcttgcctttggtctccatagATATCAACGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCCTGGCTCTTTCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCTTTCCGCACACAGTGCATTGgtaagtttggggactcctggtcttgtggattcacaaggctggatgggagg #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCC-TGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagctGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCCTGGGGTG-CCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagctGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCCTGGGGTGCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCCTGGGGTGCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCCTGGGGTGCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAG-CCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCCTGGGGTG-CCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCCTGGGGTGCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCCTGGGGTGCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gggcaggacatagcaacgttcagttcctaccagaagatgatttattctagCTGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCCTGGGGTGCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtctgttagaagcaccttgtggatgatgtaaggatgggacaaagctgtgt #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCT-GGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg cctgctcctactccccaccccacccccttatacttttttgtttcactcagacCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTCGGCTACC-GCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaatgtaccctcccaaccaaagcaggcatcattatcatcccttgactta Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg cctgctcctactccccaccccacccccttatacttttttgtttcactcagacCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTCGGCTACCGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaatgtaccctcccaaccaaagcaggcatcattatcatcccttgactta Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG cctgctcctactccccaccccacccccttatacttttttgtttcactcagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTCGGCTACCGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaatgtaccctcccaaccaaagcaggcatcattatcatcccttgactta Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG cctgctcctactccccaccccacccccttatacttttttgtttcactcagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTCGGCTACCGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaatgtaccctcccaaccaaagcaggcatcattatcatcccttgactta Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCT-GGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG cctgctcctactccccaccccacccccttatacttttttgtttcactcagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTCGGCTACC-GCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaatgtaccctcccaaccaaagcaggcatcattatcatcccttgactta Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG cctgctcctactccccaccccacccccttatacttttttgtttcactcagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTCGGCTACCGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaatgtaccctcccaaccaaagcaggcatcattatcatcccttgactta Alignment from Exonerate_coding2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG cctgctcctactccccaccccacccccttatacttttttgtttcactcagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTCGGCTACCGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaatgtaccctcccaaccaaagcaggcatcattatcatcccttgactta Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG cctgctcctactccccaccccacccccttatacttttttgtttcactcagACCTGAATGAGTGCACCAAGCCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTCGGCTACCGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaatgtaccctcccaaccaaagcaggcatcattatcatcccttgactta #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGG-AAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagccGAATTTCACAGCCTGTGTCCTGATGGGCAAAGGCTACA-TCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTggtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagccGAATTTCACAGCCTGTGTCCTGATGGGCAAAGGCTACATCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTggtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGCAAAGGCTACATCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGCAAAGGCTACATCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGGG-AAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGCAAAGGCTACA-TCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGCAAAGGCTACATCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Exonerate_coding2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGCAAAGGCTACATCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGCAAAGGCTACATCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAG-CAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagacATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCCAGGGCT-CTACTACGATGGCAACCTGCTGGAGTGCGTGggtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccac Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagacATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCCAGGGCTCTACTACGATGGCAACCTGCTGGAGTGCGTGggtaagtccagttacagtgcttctcaggaaagcagccgaatccaggccctc Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCCAGGGCTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccac Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCCAGGGCTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccac Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCCAGGGCTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccac Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCCAGGGCTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccac Alignment from Exonerate_coding2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCCAGGGCTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccac Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCCAGGGCTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggcccac #### Ltbp3_ID1273_25 --> 2 - 1 Original Alignment GCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTA-CTGGGGAAGTCTCCGCGAg GCACTggtgagctacccctgagggactataacaaaatcttaatcttccagggTCCCAGTGTCCAACTTCACAAAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACCTGG-GAAGTCTCCGCGAggttggtgaggccaaggggccaaaggtatagaagcccatttttatatattg Alignment from CESAR GCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg GCACTggtgagttacccctgagggactataacaaaatcttaatcttccagggTCCCAGTGTCCAACTTCACAAAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACCTGGGAAGTCTCCGCGAggttggtgaggccaaggggccaaaggtatagaagcccatttttatattgta Alignment from Spaln_aa2Genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GCACTGgtgagctacccctgagggactataacaaaatcttaatcttccagGGTCCCAGTGTCCAACTTCACAAAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACCTGGGAAGTCTCCGCGAGgttggtgaggccaaggggccaaaggtatagaagcccatttttatatattg Alignment from Spaln_nt2Genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GCACTGgtgagctacccctgagggactataacaaaatcttaatcttccagGGTCCCAGTGTCCAACTTCACAAAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACCTGGGAAGTCTCCGCGAGgttggtgaggccaaggggccaaaggtatagaagcccatttttatatattg Alignment from Pairagon GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GCACTGgtgagctacccctgagggactataacaaaatcttaatcttccagGGTCCCAGTGTCCAACTTCACAAAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACCTGGGAAGTCTCCGCGAGgttggtgaggccaaggggccaaaggtatagaagcccatttttatatattg Alignment from Exonerate_protein2genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GCACTGgtgagctacccctgagggactataacaaaatcttaatcttccagGGTCCCAGTGTCCAACTTCACAAAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACCTGGGAAGTCTCCGCGAGgttggtgaggccaaggggccaaaggtatagaagcccatttttatatattg Alignment from Exonerate_coding2genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GCACTGgtgagctacccctgagggactataacaaaatcttaatcttccagGGTCCCAGTGTCCAACTTCACAAAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACCTGGGAAGTCTCCGCGAGgttggtgaggccaaggggccaaaggtatagaagcccatttttatatattg Alignment from GeneWise GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GCACTGgtgagctacccctgagggactataacaaaatcttaatcttccagGGTCCCAGTGTCCAACTTCACAAAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACCTGGGAAGTCTCCGCGAGgttggtgaggccaaggggccaaaggtatagaagcccatttttatatattg #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGC-TGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCCTGCTACT-GAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtctgtttt Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCCTGCTACTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttattgc Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCCTGCTACTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtctgtttt Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCCTGCTACTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtctgtttt Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAG-CTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCCTGCTAC-TGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtctgtttt Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCCTGCTACTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtctgtttt Alignment from Exonerate_coding2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTGGCTTTCCCGTGCATCTCCACAGGCGTGTTTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCCTGCTACTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGGTAAGAGTCAATTGGCAGCAGGGTCAG---Ggtcagggtcatatgtctgt Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCCTGCTACTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtctgtttt #### Macrod1_ID2052_7 --> 0 - 1 Original Alignment GCTTTCCCGTGC-ATCTCCACAGGCGTGTTTg cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCCATCT-CACGGGCGTGATTagtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from CESAR GCTTTCCCGTGCATCTCCACAGGCGTGTTTg cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCCATCTCACGGGCGTGATTagtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from Spaln_aa2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCCATCTCACGGGCGTGATTAgtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from Spaln_nt2Genome GCTTTCCCGTGC-ATCTCCACAGGCGTGTTTG cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCCATCT-CACGGGCGTGATTAgtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from Pairagon GCTTTCCCGTGCATCTCCACAGGCGTGTTTG cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCCATCTCACGGGCGTGATTAgtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from Exonerate_protein2genome ACAGGCGTGTTTG CAGGGTCAG---Ggtcagggtcatatgtttattgcgtttccaatatccaggcttttccatgccatctcacgggcgtgattagtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from Exonerate_coding2genome ACAGGCGTGTTTG CAGGGTCAG---Ggtcagggtcatatgtttattgcgtttccaatatccaggcttttccatgccatctcacgggcgtgattagtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from GeneWise TCCACAGGCGTGTTTGGC- CAGCAGGGTCAGGGTCAGGgtcatatgtttattgcgtttccaatatccaggcttttccatgccatctcacgggcgtgattagtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCAGAAGTA-GTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcaggcTACCCCAATGAGGAGGCTGCAGAAGTACGTGCTGGTTT-GCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcaggcTACCCCAATGAGGAGGCTGCAGAAGTACGTGCTGGTTTGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTGCAGAAGTACGTGCTGGTTTGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTGCAGAAGTACGTGCTGGTTTGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAAGTA-GTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTGCAGAAGTACGTGCTGG-TTTGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTGCAGAAGTACGTGCTGGTTTGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Exonerate_coding2genome TTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgCAGGCTACCCCAATGAGGAGGCTGCAGAAGTACGTGCTGGTTTGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from GeneWise GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTGCAGAAGTACGTGCTGGTTTGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTC-ATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCCATCATCTGTG-GTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCTTCCCCATTATTTCCCAGTAggtgagcacccgttcctcctatgctctggggcatctatttgcttttgtggt Alignment from CESAR GTGGATCGGCTC-ATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCCATCATCTGT-GGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCTTCCCCATTATTTCCCAGTAggtgagcacccgttcctcctatgctctggggcacctgtccttaagccctgc Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCCATCATCTGTGGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCTTCCCCATTATTTCCCAGTAGgtgagcacccgttcctcctatgctctggggcatctatttgcttttgtggt Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCCATCATCTGTGGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCTTCCCCATTATTTCCCAGTAGGTgagcacccgttcctcctatgctctggggcatctatttgcttttgtggt Alignment from Pairagon GTGGATCGGCT-CATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCCATCATCTGTG-GTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCTTCCCCATTATTTCCCAGTAGgtgagcacccgttcctcctatgctctggggcatctatttgcttttgtggt Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCCATCATCTGTGGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCTTCCCCATTATTTCCCAGTAggtgagcacccgttcctcctatgctctggggcatctatttgcttttgtggt Alignment from Exonerate_coding2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCCATCATCTGTGGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCTTCCCCATTATTTCCCAGTAggtgagcacccgttcctcctatgctctggggcatctatttgcttttgtggt Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCCATCATCTGTGGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCTTCCCCATTATTTCCCAGTAGGTgagcacccgttcctcctatgctctggggcatctatttgcttttgtggt #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAAT-GTCGTGGCCTACATCGGCAGCTACCTCag ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATCGTCGTGG-CTACATCGGCAGCTACCTCaggtacagctgtttatcctcttaccctcttgtgcccattgtgccaggctgcc Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATCGTCGTGGCTACATCGGCAGCTACCTCaggtacagctgtttatcctcttaccctcttgtgcccattgtgccaaccgcgt Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATCGTCGTGGCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccaggctgcc Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATCGTCGTGGCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccaggctgcc Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAAT-GTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATCGTCGTGG-CTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccaggctgcc Alignment from Exonerate_protein2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATCGTCGTGGCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccaggctgcc Alignment from Exonerate_coding2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATCGTCGTGGCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccaggctgcc Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATCGTCGTGGCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccaggctgcc #### Map4k2_ID1627_6 --> 0 - 0 Original Alignment GGGCTCCACCACCTGCATTCT-CAGGGGAAAATTCACCGAGACATTAAG taattagtgcaaagcagttgtccctgggtaacactgtccctgtcccccagGGCCTCCACCACCTGCATTCTCCAGGGGA-AATTCACCGAGACATTAAGgtaagagttcaaccaagggcatggttcaaatgaggaggaagccgacaggc Alignment from CESAR GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG taattagtgcaaagcagttgtccctgggtaacactgtccctgtcccccagGGCCTCCACCACCTGCATTCTCCAGGGGAAATTCACCGAGACATTAAGgtaagagttcaaccaagggcatggttcaaatgaggaggaagccgacaggc Alignment from Spaln_aa2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG taattagtgcaaagcagttgtccctgggtaacactgtccctgtcccccagGGCCTCCACCACCTGCATTCTCCAGGGGAAATTCACCGAGACATTAAGgtaagagttcaaccaagggcatggttcaaatgaggaggaagccgacaggc Alignment from Spaln_nt2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG taattagtgcaaagcagttgtccctgggtaacactgtccctgtcccccagGGCCTCCACCACCTGCATTCTCCAGGGGAAATTCACCGAGACATTAAGgtaagagttcaaccaagggcatggttcaaatgaggaggaagccgacaggc Alignment from Pairagon GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG taattagtgcaaagcagttgtccctgggtaacactgtccctgtcccccagGGCCTCCACCACCTGCATTCTCCAGGGGAAATTCACCGAGACATTAAGgtaagagttcaaccaagggcatggttcaaatgaggaggaagccgacaggc Alignment from Exonerate_protein2genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG taattagtgcaaagcagttgtccctgggtaacactgtccctgtcccccagGGCCTCCACCACCTGCATTCTCCAGGGGAAATTCACCGAGACATTAAGgtaagagttcaaccaagggcatggttcaaatgaggaggaagccgacaggc Alignment from Exonerate_coding2genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG taattagtgcaaagcagttgtccctgggtaacactgtccctgtcccccagGGCCTCCACCACCTGCATTCTCCAGGGGAAATTCACCGAGACATTAAGgtaagagttcaaccaagggcatggttcaaatgaggaggaagccgacaggc Alignment from GeneWise GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG taattagtgcaaagcagttgtccctgggtaacactgtccctgtcccccagGGCCTCCACCACCTGCATTCTCCAGGGGAAATTCACCGAGACATTAAGgtaagagttcaaccaagggcatggttcaaatgaggaggaagccgacaggc #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment GGTGCCAACCTTCTGCTCACT-CTGCAGGGTGATGTCAAGCTGg ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCCTGC-GGGTGATGTCAAGCTGggtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from CESAR GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCCTGCGGGTGATGTCAAGCTGggtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Spaln_aa2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCCTGCGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Spaln_nt2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCCTGCGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Pairagon GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCCTGCGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Exonerate_protein2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCCTGCGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Exonerate_coding2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCCTGCGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from GeneWise GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCCTGCGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCC-AAAAGACGTTCTTTCATTGGCACTCCATACtg gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagcaGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCCAAAAGAC-TTCTTTCATTGGCACTCCATACtggtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagcaGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCCAAAAGACTTCTTTCATTGGCACTCCATACtggtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCCAAAAGACTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCCAAAAGACTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Pairagon CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCCAAAAGACTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCCAAAAGACTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCCAAAAGACTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCCAAAAGACTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCGAAAAGC-AGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg tccttgcttgccctgctgatctttgacctatttttcaatctttgactaaggGCCTTGATGCTCATGTCGAAGAGCCAGCTTCCAGC-ACCTAAGCTAAGAGATAAGACACGTtggtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from CESAR gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg tccttgcttgccctgctgatctttgacctatttttcaatctttgactaaggGCCTTGATGCTCATGTCGAAGAGCCAGCTTCCAGCACCTAAGCTAAGAGATAAGACACGTtggtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCCAGCTTCCAGCACCTAAGCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCCAGCTTCCAGCACCTAAGCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from Pairagon GGCCTTGATGCTCATGTCGAAAAG-CAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCCAGCTTCCAG-CACCTAAGCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from Exonerate_protein2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCCAGCTTCCAGCACCTAAGCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from Exonerate_coding2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCCAGCTTCCAGCACCTAAGCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from GeneWise GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCCAGCTTCCAGCACCTAAGCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTC-AAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcaggACCCAGAATTTCCACCACTTCCTCCAAGCTGGCCC-AACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcaggACCCAGAATTTCCACCACTTCCTCCAAGCTGGCCCAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCCAAGCTGGCCCAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCCAAGCTGGCCCAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCT-CAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCCAAGCTGGCCC-AACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCCAAGCTGGCCCAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCCAAGCTGGCCCAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCCAAGCTGGCCCAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCT-GAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTCGAAG-CAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTCGAAGCAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTCGAAGCAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTCGAAGCAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Pairagon CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTCGAAGCAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTCGAAGCAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTCGAAGCAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTCGAAGCAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta #### Map4k2_ID1635_14 --> 2 - 0 Original Alignment ttCACCAAGTGAAATTCGGTGCTCCTCGCCGG-AAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagttCACCAAGTGAAATTTGGTGCTCCTCGCCGGCAAGGAGA-AGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from CESAR ttCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagttCACCAAGTGAAATTTGGTGCTCCTCGCCGGCAAGGAGAAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from Spaln_aa2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTGCTCCTCGCCGGCAAGGAGAAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from Spaln_nt2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTGCTCCTCGCCGGCAAGGAGAAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from Pairagon TTCACCAAGTGAAATTCGGTGCTCCTCGCCGG-AAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTGCTCCTCGCCGGCAAGGAGA-AGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from Exonerate_protein2genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTGCTCCTCGCCGGCAAGGAGAAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from Exonerate_coding2genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTGCTCCTCGCCGGCAAGGAGAAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from GeneWise TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTGCTCCTCGCCGGCAAGGAGAAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct #### Map4k2_ID1637_16 --> 1 - 2 Original Alignment gAGCCTGCTGCAG-TCAGTCCAGGAGGCCCTGGAGGAAag caggctgagtcttattgaagactgactctctgtcctgacttttcccacaggAGCCTGCTGCAGCTCAGTCCAGG-GGCCCTGGAGGAAaggtatgcgacccacacttggtgtgaagaggggcctccaggcctggggaaca Alignment from CESAR gAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAag caggctgagtcttattgaagactgactctctgtcctgacttttcccacaggAGCCTGCTGCAGCTCAGTCCAGGGGCCCTGGAGGAAaggtatgcgacccacacttggtgtgaagaggggcctccaggcctggggaaca Alignment from Spaln_aa2Genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG caggctgagtcttattgaagactgactctctgtcctgacttttcccacagGAGCCTGCTGCAGCTCAGTCCAGGGGCCCTGGAGGAAAGgtatgcgacccacacttggtgtgaagaggggcctccaggcctggggaaca Alignment from Spaln_nt2Genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG caggctgagtcttattgaagactgactctctgtcctgacttttcccacagGAGCCTGCTGCAGCTCAGTCCAGGGGCCCTGGAGGAAAGgtatgcgacccacacttggtgtgaagaggggcctccaggcctggggaaca Alignment from Pairagon GAGCCTGCTGCAG-TCAGTCCAGGAGGCCCTGGAGGAAAG caggctgagtcttattgaagactgactctctgtcctgacttttcccacagGAGCCTGCTGCAGCTCAGTCCAGG-GGCCCTGGAGGAAAGgtatgcgacccacacttggtgtgaagaggggcctccaggcctggggaaca Alignment from Exonerate_protein2genome GAGG CAGGctgagtcttattgaagactgactctctgtcctgacttttcccacaggagcctgctgcagctcagtccaggggccctggaggaaaggtatgcgacccacacttggtgtgaagaggggcctccaggcctggggaaca Alignment from Exonerate_coding2genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG caggctgagtcttattgaagactgactctctgtcctgacttttcccacagGAGCCTGCTGCAGCTCAGTCCAGGGGCCCTGGAGGAAAGgtatgcgacccacacttggtgtgaagaggggcctccaggcctggggaaca Alignment from GeneWise caggctgagtcttattgaagactgactctctgtcctgacttttcccacaggagcctgctgcagctcagtccaggggccctggaggaaaggtatgcgacccacacttggtgtgaagaggggcctccaggcctggggaaca #### Map4k2_ID1638_17 --> 1 - 0 Original Alignment gAGCCTGACTATC-CGGCCAGCCTTAGAACTCCAG ggaacagtcccctctcacaccccatcattgttcttttttttacccttcaggAGCCTGACTATCCCGGCCAG-CTTAGAACTCCAGgtgggtattgaagagggtagcgcttgaaagtcactcatgagctagcgtgc Alignment from CESAR gAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG ggaacagtcccctctcacaccccatcattgttcttttttttacccttcaggAGCCTGACTATCCCGGCCAGCTTAGAACTCCAGgtgggtattgaagagggtagcgcttgaaagtcactcatgagctagcgtgc Alignment from Spaln_aa2Genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG ggaacagtcccctctcacaccccatcattgttcttttttttacccttcagGAGCCTGACTATCCCGGCCAGCTTAGAACTCCAGgtgggtattgaagagggtagcgcttgaaagtcactcatgagctagcgtgc Alignment from Spaln_nt2Genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG ggaacagtcccctctcacaccccatcattgttcttttttttacccttcagGAGCCTGACTATCCCGGCCAGCTTAGAACTCCAGgtgggtattgaagagggtagcgcttgaaagtcactcatgagctagcgtgc Alignment from Pairagon GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG ggaacagtcccctctcacaccccatcattgttcttttttttacccttcagGAGCCTGACTATCCCGGCCAGCTTAGAACTCCAGgtgggtattgaagagggtagcgcttgaaagtcactcatgagctagcgtgc Alignment from Exonerate_protein2genome ggaacagtcccctctcacaccccatcattgttcttttttttacccttcaggagcctgactatcccggccagcttagaactccaggtgggtattgaagagggtagcgcttgaaagtcactcatgagctagcgtgc Alignment from Exonerate_coding2genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG ggaacagtcccctctcacaccccatcattgttcttttttttacccttcagGAGCCTGACTATCCCGGCCAGCTTAGAACTCCAGgtgggtattgaagagggtagcgcttgaaagtcactcatgagctagcgtgc Alignment from GeneWise GTGGGAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG ggaacagTCCCCTCTCACACCCCATCATTGTTCTTTTTTTTACCCTTCAGGAGCCTGACTATCCCGGCCAGCTTAGAACTCCAGgtgggtattgaagagggtagcgcttgaaagtcactcatgagctagcgtgc #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGAACCATC-AAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCCAAACGGG-TCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCCAAACGGGTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCCAAACGGGTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCCAAACGGGTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCCAAACGGGTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCCAAACGGGTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Exonerate_coding2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCCAAACGGGTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from GeneWise AGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG GACACCTGCTAATGAGACCAGGGTCAGCTGTCCCCTTTCTC------CAGGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCCAAACGGGTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg #### Map4k2_ID1640_19 --> 2 - 0 Original Alignment gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCA-TTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcaggtACCCTGTCAGCGCCTCCAGCTGGCCCAGGCAGCCCCGCACTTGCTAC-TACTGCTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from CESAR gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcaggtACCCTGTCAGCGCCTCCAGCTGGCCCAGGCAGCCCCGCACTTGCTACTACTGCTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from Spaln_aa2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTGGCCCAGGCAGCCCCGCACTTGCTACTACTGCTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from Spaln_nt2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTGGCCCAGGCAGCCCCGCACTTGCTACTACTGCTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from Pairagon GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTGGCCCAGGCAGCCCCGCACTTGCTACTACTGCTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from Exonerate_protein2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTGGCCCAGGCAGCCCCGCACTTGCTACTACTGCTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from Exonerate_coding2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTGGCCCAGGCAGCCCCGCACTTGCTACTACTGCTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAgtgagagagacggcagaagggtgggagtggtgctgcagggtgccacccag Alignment from GeneWise GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG-------------------------------------------------- tattctggggtagtgctggggcttggcataattttatgaaatctgtgcagGTACCCTGTCAGCGCCTCCAGCTGGCCCAGGCAGCCCCGCACTTGCTACTACTGCTTGGGCTACTCTGAAGCAACAGGAGGATCGTGAAGTGAGAGAGACGGCAGAAGGGTGGGAGTGGTGCTGCAGGGTGCCACCCAG #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAG-ATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGCATCCATG-TGCTGTCACTTGGGTTCACCCTGTGACTCGAggtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGCATCCATGTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGCATCCATGTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGCATCCATGTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAG-ATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGCATCCATG-TGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGCATCCATGTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGCATCCATGTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgtcctggcactgccgattggtcccttgactagttattcttcttccccagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGCATCCATGTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtaagtagaggtagagcagaagcaataacttaggacacccttaccctggg #### Map4k2_ID1643_22 --> 2 - 0 Original Alignment acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACC-CTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG cctgggctagaaacatgtggcagcctcttaagtgctttctgctcttccagacCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCCTCAACCTGC-CGAACTGCATGAGGACAGAATGGAGAAGgtaaaacttgttggctgttggggacagaggcacaggatgctggctactga Alignment from CESAR acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG cctgggctagaaacatgtggcagcctcttaagtgctttctgctcttccagacCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCCTCAACCTGCCGAACTGCATGAGGACAGAATGGAGAAGgtaaaacttgttggctgttggggacagaggcacaggatgctggctactga Alignment from Spaln_aa2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG cctgggctagaaacatgtggcagcctcttaagtgctttctgctcttccagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCCTCAACCTGCCGAACTGCATGAGGACAGAATGGAGAAGgtaaaacttgttggctgttggggacagaggcacaggatgctggctactga Alignment from Spaln_nt2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG cctgggctagaaacatgtggcagcctcttaagtgctttctgctcttccagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCCTCAACCTGCCGAACTGCATGAGGACAGAATGGAGAAGgtaaaacttgttggctgttggggacagaggcacaggatgctggctactga Alignment from Pairagon ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATA-CCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG cctgggctagaaacatgtggcagcctcttaagtgctttctgctcttccagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCCTCAACCTGC-CGAACTGCATGAGGACAGAATGGAGAAGgtaaaacttgttggctgttggggacagaggcacaggatgctggctactga Alignment from Exonerate_protein2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG cctgggctagaaacatgtggcagcctcttaagtgctttctgctcttccagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCCTCAACCTGCCGAACTGCATGAGGACAGAATGGAGAAGgtaaaacttgttggctgttggggacagaggcacaggatgctggctactga Alignment from Exonerate_coding2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG cctgggctagaaacatgtggcagcctcttaagtgctttctgctcttccagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCCTCAACCTGCCGAACTGCATGAGGACAGAATGGAGAAGgtaaaacttgttggctgttggggacagaggcacaggatgctggctactga Alignment from GeneWise ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG cctgggctagaaacatgtggcagcctcttaagtgctttctgctcttccagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCCTCAACCTGCCGAACTGCATGAGGACAGAATGGAGAAGgtaaaacttgttggctgttggggacagaggcacaggatgctggctactga #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAAT-GTGTTGCTGTCGCTCTCAg aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATCGTGT-GCTGTCGCTCTCAggtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from CESAR CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATCGTGTGCTGTCGCTCTCAggtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from Spaln_aa2Genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATCGTGTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from Spaln_nt2Genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATCGTGTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from Pairagon CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATCGTGTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from Exonerate_protein2genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATCGTGTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from Exonerate_coding2genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATCGTGTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from GeneWise CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATCGTGTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTG-CCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagccGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCCAGGCC-GGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagccGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCCAGGCCGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCCAGGCCGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCCAGGCCGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCCAGGCCGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCCAGGCCGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCCAGGCCGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCCAGGCCGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca #### Mark2_ID2111_10 --> 0 - 1 Original Alignment CAAATTATGAAAGATCGGTGGATGAACGTG-GGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tgctgagtttccttcccctctgtaccttgccatagtattcttgttcctagCAAATTATGAAAGATCGGTGGATGAACGTGCGGGCATG-GGATGATGAGCTAAAGCCTTACGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAggtaatgccatgctagctgggagctagagcctgcccacacatgaaggccca Alignment from CESAR CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tgctgagtttccttcccctctgtaccttgccatagtattcttgttcctagCAAATTATGAAAGATCGGTGGATGAACGTGCGGGCATGGGATGATGAGCTAAAGCCTTACGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAggtaatgccatgctagctgggagctagagcctgcccacacatgaaggccca Alignment from Spaln_aa2Genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccctctgtaccttgccatagtattcttgttcctagCAAATTATGAAAGATCGGTGGATGAACGTGCGGGCATGGGATGATGAGCTAAAGCCTTACGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAGgtaatgccatgctagctgggagctagagcctgcccacacatgaaggccca Alignment from Spaln_nt2Genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccctctgtaccttgccatagtattcttgttcctagCAAATTATGAAAGATCGGTGGATGAACGTGCGGGCATGGGATGATGAGCTAAAGCCTTACGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAGgtaatgccatgctagctgggagctagagcctgcccacacatgaaggccca Alignment from Pairagon CAAATTATGAAAGATCGGTGGATGAACGTG-GGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccctctgtaccttgccatagtattcttgttcctagCAAATTATGAAAGATCGGTGGATGAACGTGCGGGCATG-GGATGATGAGCTAAAGCCTTACGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAGgtaatgccatgctagctgggagctagagcctgcccacacatgaaggccca Alignment from Exonerate_protein2genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccctctgtaccttgccatagtattcttgttcctagCAAATTATGAAAGATCGGTGGATGAACGTGCGGGCATGGGATGATGAGCTAAAGCCTTACGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAGgtaatgccatgctagctgggagctagagcctgcccacacatgaaggccca Alignment from Exonerate_coding2genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccctctgtaccttgccatagtattcttgttcctagCAAATTATGAAAGATCGGTGGATGAACGTGCGGGCATGGGATGATGAGCTAAAGCCTTACGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAGgtaatgccatgctagctgggagctagagcctgcccacacatgaaggccca Alignment from GeneWise CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctgagtttccttcccctctgtaccttgccatagtattcttgttcctagCAAATTATGAAAGATCGGTGGATGAACGTGCGGGCATGGGATGATGAGCTAAAGCCTTACGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAGgtaatgccatgctagctgggagctagagcctgcccacacatgaaggccca #### Mark2_ID2112_9 --> 0 - 0 Original Alignment GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATT-CCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCCGTTCT-CATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from CESAR GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCCGTTCTCATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from Spaln_aa2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCCGTTCTCATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from Spaln_nt2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCCGTTCTCATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from Pairagon GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCCGTTCTCATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from Exonerate_protein2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCCGTTCTCATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from Exonerate_coding2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCCGTTCTCATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from GeneWise GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCCGTTCTCATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATT-GTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacactaaattcttactgcttctcagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTCGTTC-TAGAGATCTAAAGgtaaagtgtgttcctatccctatgtcttgctgtgagtagtctgggtgacc Alignment from CESAR ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacactaaattcttactgcttctcagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtaaagtgtgttcctatccctatgtcttgctgtgagtagtctgggtgacc Alignment from Spaln_aa2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacactaaattcttactgcttctcagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtaaagtgtgttcctatccctatgtcttgctgtgagtagtctgggtgacc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacactaaattcttactgcttctcagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtaaagtgtgttcctatccctatgtcttgctgtgagtagtctgggtgacc Alignment from Pairagon ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacactaaattcttactgcttctcagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtaaagtgtgttcctatccctatgtcttgctgtgagtagtctgggtgacc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacactaaattcttactgcttctcagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtaaagtgtgttcctatccctatgtcttgctgtgagtagtctgggtgacc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacactaaattcttactgcttctcagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtaaagtgtgttcctatccctatgtcttgctgtgagtagtctgggtgacc Alignment from GeneWise ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacactaaattcttactgcttctcagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTCGTTCTAGAGATCTAAAGgtaaagtgtgttcctatccctatgtcttgctgtgagtagtctgggtgacc #### Mark2_ID2116_5 --> 2 - 1 Original Alignment ttAAGTTGTTTGAAGTGATCGAGACTGAG-AAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagttAAGTTGTTTGAAGTCATTGAGACTGAGCAAGACTC-CTACCTTGTCATGGAGTATGCCAGTGGTggtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from CESAR ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagttAAGTTGTTTGAAGTCATTGAGACTGAGCAAGACTCCTACCTTGTCATGGAGTATGCCAGTGGTggtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from Spaln_aa2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGCAAGACTCCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from Spaln_nt2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGCAAGACTCCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from Pairagon TTAAGTTGTTTGAAGTGATCGAGACTGAG-AAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGCAAGACTC-CTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from Exonerate_protein2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGCAAGACTCCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from Exonerate_coding2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGCAAGACTCCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from GeneWise TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGCAAGACTCCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc #### Mrpl11_ID767_2 --> 0 - 0 Original Alignment CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGC-ATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCCATTCCTCTGC-TACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from CESAR CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCCATTCCTCTGCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from Spaln_aa2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCCATTCCTCTGCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from Spaln_nt2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCCATTCCTCTGCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from Pairagon CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGG-CATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCCATTCCTCTG-CTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from Exonerate_protein2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCCATTCCTCTGCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from Exonerate_coding2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCCATTCCTCTGCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca Alignment from GeneWise CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagccttcagctctcatacttaacttatttcattgttttttattagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCCATTCCTCTGCTACAAAAATTTTTATAAAGgtaagcagacccattctcccatatatttcattggccctagaaactagtca #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGG-CAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTG-TTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAggtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAggtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGG-CAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTG-TTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCCAGCCCACTGTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTC-GTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggctggggtcaggccactctacgctcccaccccttatatttcaggGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACG-GAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACcgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTC-GTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggctggggtcaggccactctacgctcccaccccttatatttcaggGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATAC-GGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACcgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAG-TCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACG-GAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt #### Mta2_ID2532_5 --> 1 - 0 Original Alignment gGGGAAGTGCAGCGTGACTCTCTTGAAC-GAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtaaggtggactgctcatccaggactttggttgttttttttactcccaggGTAAAGTGCAGCGTGACTCTCTTGAATCGAGACAGACA-CTTAAACCAGTATCTAGACAAGGAGgtgagtagccgttgggataagagggaggtgagagaatgttgcccctaaag Alignment from CESAR cacactttcctaattggaatttgagagccctaagatggcatcaaccccagc Alignment from Spaln_aa2Genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtaaggtggactgctcatccaggactttggttgttttttttactcccagGGTAAAGTGCAGCGTGACTCTCTTGAATCGAGACAGACACTTAAACCAGTATCTAGACAAGGAGgtgagtagccgttgggataagagggaggtgagagaatgttgcccctaaag Alignment from Spaln_nt2Genome ggtaaggtggactgctcatccaggactttggttgttttttttactcccagggtaaagtgcagcgtgactctcttgaatcgagacagacacttaaaccagtatctagacaaggaggtgagtagccgttgggataagagggaggtgagagaatgttgcccctaaag Alignment from Pairagon GGGGAAGTGCAGCGTGACTCTCTTGAA-CGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtaaggtggactgctcatccaggactttggttgttttttttactcccagGGTAAAGTGCAGCGTGACTCTCTTGAATCGAGACAGACA-CTTAAACCAGTATCTAGACAAGGAGgtgagtagccgttgggataagagggaggtgagagaatgttgcccctaaag Alignment from Exonerate_protein2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtaaggtggactgctcatccaggactttggttgttttttttactcccagGGTAAAGTGCAGCGTGACTCTCTTGAATCGAGACAGACACTTAAACCAGTATCTAGACAAGGAGgtgagtagccgttgggataagagggaggtgagagaatgttgcccctaaag Alignment from Exonerate_coding2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtaaggtggactgctcatccaggactttggttgttttttttactcccagGGTAAAGTGCAGCGTGACTCTCTTGAATCGAGACAGACACTTAAACCAGTATCTAGACAAGGAGgtgagtagccgttgggataagagggaggtgagagaatgttgcccctaaag Alignment from GeneWise ggtaaggtggactgctcatccaggactttggttgttttttttactcccagggtaaagtgcagcgtgactctcttgaatcgagacagacacttaaaccagtatctagacaaggaggtgagtagccgttgggataagagggaggtgagagaatgttgcccctaaag #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGG-CAGATTGATCAGTTTCTCGTGGTGGCCcg tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacaggaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCGACCAGA-TGATCAATTTCTCGTGGTGGCCcggtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacaggaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCGACCAGATGATCAATTTCTCGTGGTGGCCcggtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCGACCAGATGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCGACCAGATGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCGACCAGATGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCGACCAGATGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCGACCAGATGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgagttatttccctttctccctccaggcctgtgtgtgcttgcctacagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCGGACAACCCCCTCACAGACCGACCAGATGATCAATTTCTCGTGGTGGCCCGgtaatgggggtggatcaggaaggtgggctagggaggaatggactgagatc #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCCCTAGAC-TGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagcGCTGTGGGAACCTTTGTGAGAGCCCTAGACCTGCA-CAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagcGCTGTGGGAACCTTTGTGAGAGCCCTAGACCTGCACAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACCTGCACAGCTCAATTCGGCAGCCAAGCTTGCACATGAGT------GCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACCTGCACAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACCTGCACAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACCTGCACAGCTCAATTCGGCAGCCAAGCTTGCACATGAGT------GCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACCTGCACAGCTCAATTCGGCAGCCAAGCTTGCACATGAGT------GCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACCTGCACAGCTCAATTCGGCAGCCAAGCTTGCACATGAGT------GCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCC-AAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCCAAGGCCA-GTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCCAAGGCCAGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCCAAGGCCAGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCCAAGGCCAGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGG-CCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCCAAGGCCA-GTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCCAAGGCCAGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCCAAGGCCAGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcacttagagagtagcaagtccttagttgctctgttctaactccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCCAAGGCCAGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGGAGAAGTATGGGAAGGATTTCAATGATATCCGCCAGGACTTTgtaagcgatcaagactaggaggagagagaatgacgatggcgctaggaaca #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCACAGCA-AGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from CESAR CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCACAGCAAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCACAGCAAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCACAGCAAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Pairagon CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCACAGCA-AGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCACAGCAAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCACAGCAAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from GeneWise CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCACAGCAAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAA-GGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAACGGGGCTG-TCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAACGGGGCTGTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAACGGGGCTGTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAACGGGGCTGTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAACGGGGCTGTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAACGGGGCTGTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAACGGGGCTGTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAACGGGGCTGTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAAC-AGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagtgGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACCAGAAACC-GCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagtgGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACCAGAAACCGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACCAGAAACCGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACCAGAAACCGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACCAGAAACCGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACCAGAAACCGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACCAGAAACCGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT aggggaagatgggaacattttctatctcacttgtcgcttttgcttttcagTGGCTCAGGCACCTCTGAAACCAAAAACACCTAGGGGTACCAAGACACCAATCAACCAGAAACCGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACCgtaaggtggcagagtaggttaaaagctgagcagggtgggcggttgttttt #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAA-TTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAACTTTT-AGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAACTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAACTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAACTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAACTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAACTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAACTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atctgctgggctatttgacagggagtttgactgactgtatcgttttgtagGGCAAAGATGAACTTTTAGGTCAAAGCATTTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACATCACACCCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAGgtatgtttttgttcatgctcatggattccacaagctgcttagagcacctc #### Myrf_ID2719_18 --> 1 - 2 Original Alignment cGTGGTGTCTATGTCCACA-CTATATGTGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATgg cttgcattcagacagtgattcagacagtcagcttgacgtcttctttacagtGTGGTGTCCATGTCAACACCTATTTG-GCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATgggtgagtccatggagatgacattattgttaaacccccaggcccagtgggtg Alignment from CESAR cGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATgg cttgcattcagacagtgattcagacagtcagcttgacgtcttctttacagtGTGGTGTCCATGTCAACACCTATTTGGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATgggtgagtccatggagatgacattattgttaaacccccaggcccagtgggtg Alignment from Spaln_aa2Genome CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGG cttgcattcagacagtgattcagacagtcagcttgacgtcttctttacagTGTGGTGTCCATGTCAACACCTATTTGGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGGgtgagtccatggagatgacattattgttaaacccccaggcccagtgggtg Alignment from Spaln_nt2Genome CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGG cttgcattcagacagtgattcagacagtcagcttgacgtcttctttacagTGTGGTGTCCATGTCAACACCTATTTGGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGGgtgagtccatggagatgacattattgttaaacccccaggcccagtgggtg Alignment from Pairagon CGTGGTGTCTATGTCCACA-CTATATGTGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGG cttgcattcagacagtgattcagacagtcagcttgacgtcttctttacagTGTGGTGTCCATGTCAACACCTATTTG-GCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGGgtgagtccatggagatgacattattgttaaacccccaggcccagtgggtg Alignment from Exonerate_protein2genome CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGG cttgcattcagacagtgattcagacagtcagcttgacgtcttctttacagTGTGGTGTCCATGTCAACACCTATTTGGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGGgtgagtccatggagatgacattattgttaaacccccaggcccagtgggtg Alignment from Exonerate_coding2genome CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGG cttgcattcagacagtgattcagacagtcagcttgacgtcttctttacagTGTGGTGTCCATGTCAACACCTATTTGGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGGgtgagtccatggagatgacattattgttaaacccccaggcccagtgggtg Alignment from GeneWise CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGG cttgcattcagacagtgattcagacagtcagcttgacgtcttctttacagTGTGGTGTCCATGTCAACACCTATTTGGCTGAGCCTGCGCTCTGAAGAGGACCTGGTGGATGCTGATGGgtgagtccatggagatgacattattgttaaacccccaggcccagtgggtg #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATC-ATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCCATAG-TCTGGTGGTGGTCATGGCCTTCaggtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCCATAGTCTGGTGGTGGTCATGGCCTTCaggtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCCATAGTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCCATAGTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTAT-CATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCCATAG-TCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCCATAGTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCCATAGTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCCATAGTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTT-AGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagcCATGCAGGGAGCGAATTTCAGTC-GGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from CESAR cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagcCATGCAGGGAGCGAATTTCAGTCGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTCAGTCGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTCAGTCGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTCAGTCGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTCAGTCGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTCAGTCGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTCAGTCGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTCATGGAGAATGTGGGGGCT-GTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGGGGGCTCGTGAAGG-GTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from CESAR GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGGGGGCTCGTGAAGGGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from Spaln_aa2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGGGGGCTCGTGAAGGGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from Spaln_nt2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGGGGGCTCGTGAAGGGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from Pairagon GAGCGAATCTTCATGGAGAATGTGGGGGCT-GTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGGGGGCTCGTGAAGG-GTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGGGGGCTCGTGAAGGGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from Exonerate_coding2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGGGGGCTCGTGAAGGGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg Alignment from GeneWise GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacgtgggctaatcaatggtaccctcatgtaaatgtattcctttgacagGAGCGAATCTTCATGGAGAATGTGGGGGCTCGTGAAGGGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaagagtgccaggcaggtggggctgggggagacgggggcaggagggggg #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGG-ATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCTAAAGAGGATCTCTCGGCATGCGGT-AGTGCACTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAggtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCTAAAGAGGATCTCTCGGCATGCGGTAGTGCACTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAggtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCTAAAGAGGATCTCTCGGCATGCGGTAGTGCACTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCTAAAGAGGATCTCTCGGCATGCGGTAGTGCACTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGG-ATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCTAAAGAGGATCTCTCGGCATGCGG-TAGTGCACTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCTAAAGAGGATCTCTCGGCATGCGGTAGTGCACTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCTAAAGAGGATCTCTCGGCATGCGGTAGTGCACTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattgcaggagggtgggagggttcagtgttttgttcttttcctcaaagGTGGACACCACCGAACACCTAAAGAGGATCTCTCGGCATGCGGTAGTGCACTACAGATACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACCGCACCGGAGACAGgtgagtatgtccctgtgtcccttagaggtgccagtctgtcctgtgtctcc #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTC-CATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccaggGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCCATT-CACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGaggtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccaggGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCCATTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGaggtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCCATTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCCATTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCCATTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCCATTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCCATTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCCATTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAA-CGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacaggTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCCGGGAGG-AATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtggtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacaggTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCCGGGAGGAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtggtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCCGGGAGGAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCCGGGAGGAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCCGGGAGGAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCCGGGAGGAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCCGGGAGGAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCCGGGAGGAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAG-TACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag agacacttgcaggtaccgaaaccaccctccccatctccaactatcctcagtAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGCTACAAGC-AGGACCCGGATTTGAGCCGAATGGAAGCTTCCCTGCCGGGaggtgagccagggcatctctctaccattcctttcccctctcgttgatttgtc Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag agacacttgcaggtaccgaaaccaccctccccatctccaactatcctcagtAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGCTACAAGCAGGACCCGGATTTGAGCCGAATGGAAGCTTCCCTGCCGGGaggtgagccagggcatctctctaccattcctttcccctctcgttgatttgtc Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG agacacttgcaggtaccgaaaccaccctccccatctccaactatcctcagTAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGCTACAAGCAGGACCCGGATTTGAGCCGAATGGAAGCTTCCCTGCCGGGAGgtgagccagggcatctctctaccattcctttcccctctcgttgatttgtc Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG agacacttgcaggtaccgaaaccaccctccccatctccaactatcctcagTAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGCTACAAGCAGGACCCGGATTTGAGCCGAATGGAAGCTTCCCTGCCGGGAGgtgagccagggcatctctctaccattcctttcccctctcgttgatttgtc Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAG-TACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG agacacttgcaggtaccgaaaccaccctccccatctccaactatcctcagTAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGCTACAAGC-AGGACCCGGATTTGAGCCGAATGGAAGCTTCCCTGCCGGGAGgtgagccagggcatctctctaccattcctttcccctctcgttgatttgtc Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG agacacttgcaggtaccgaaaccaccctccccatctccaactatcctcagTAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGCTACAAGCAGGACCCGGATTTGAGCCGAATGGAAGCTTCCCTGCCGGGAGgtgagccagggcatctctctaccattcctttcccctctcgttgatttgtc Alignment from Exonerate_coding2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG agacacttgcaggtaccgaaaccaccctccccatctccaactatcctcagTAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGCTACAAGCAGGACCCGGATTTGAGCCGAATGGAAGCTTCCCTGCCGGGAGgtgagccagggcatctctctaccattcctttcccctctcgttgatttgtc Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG agacacttgcaggtaccgaaaccaccctccccatctccaactatcctcagTAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGCTACAAGCAGGACCCGGATTTGAGCCGAATGGAAGCTTCCCTGCCGGGAGgtgagccagggcatctctctaccattcctttcccctctcgttgatttgtc #### Naaladl1_ID1451_10 --> 0 - 1 Original Alignment GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCC-TACATCAATGTGGACATCTCTGTTTTCt agcagtggattgatgtcacttgtcctcctctgctttcttttgtctgatagGAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGACCTATATCAATG-GGACATCTCTGTTTTCtgtgagtgaggcttggccagctgggcacaggctgggaaggggaggggtcgg Alignment from CESAR GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTG-GCCTACATCAATGTGGACATCTCTGTTTTCt agcagtggattgatgtcacttgtcctcctctgctttcttttgtctgatagGAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGACCTATATCAAT-GGGACATCTCTGTTTTCtgtgagtgaggcttggccagctgggcacaggctgggaaggggaggggtcgg Alignment from Spaln_aa2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT agcagtggattgatgtcacttgtcctcctctgctttcttttgtctgatagGAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGACCTATATCAATGGGACATCTCTGTTTTCTgtgagtgaggcttggccagctgggcacaggctgggaaggggaggggtcgg Alignment from Spaln_nt2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGG-CCTACATCAATGTGGACATCTCTGTTTTCT agcagtggattgatgtcacttgtcctcctctgctttcttttgtctgatagGAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGACCTATATCAATG-GGACATCTCTGTTTTCTgtgagtgaggcttggccagctgggcacaggctgggaaggggaggggtcgg Alignment from Pairagon GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGG-CCTACATCAATGTGGACATCTCTGTTTTCT agcagtggattgatgtcacttgtcctcctctgctttcttttgtctgatagGAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGACCTATATCAATG-GGACATCTCTGTTTTCTgtgagtgaggcttggccagctgggcacaggctgggaaggggaggggtcgg Alignment from Exonerate_protein2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT agcagtggattgatgtcacttgtcctcctctgctttcttttgtctgatagGAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGACCTATATCAATGGGACATCTCTGTTTTCTgtgagtgaggcttggccagctgggcacaggctgggaaggggaggggtcgg Alignment from Exonerate_coding2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT agcagtggattgatgtcacttgtcctcctctgctttcttttgtctgatagGAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGACCTATATCAATGGGACATCTCTGTTTTCTgtgagtgaggcttggccagctgggcacaggctgggaaggggaggggtcgg Alignment from GeneWise GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT agcagtggattgatgtcacttgtcctcctctgctttcttttgtctgatagGAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGACCTATATCAATGGGACATCTCTGTTTTCTgtgagtgaggcttggccagctgggcacaggctgggaaggggaggggtcgg #### Naaladl1_ID1453_12 --> 0 - 2 Original Alignment ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACT-AGTCCAGTATATGGACTGGTTCCCag ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTCAGTCCAG-ATATGGACTGGTTCCCaggtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from CESAR ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTCAGTCCAGATATGGACTGGTTCCCaggtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from Spaln_aa2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTCAGTCCAGATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from Spaln_nt2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTCAGTCCAGATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from Pairagon ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACT-AGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTCAGTCCAG-ATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from Exonerate_protein2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTCAGTCCAGATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from Exonerate_coding2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTCAGTCCAGATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca Alignment from GeneWise ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttcctagctattgtatctcttcttattttgtagATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTCAGTCCAGATATGGACTGGTTCCCAGgtagtcccagaaaccagataggtagggggcccactggcccagcatgtcca #### Ndufs8_ID193_3 --> 2 - 1 Original Alignment agTATGTGAATAAGAAGGAACAGGAGTCTGAG-GTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAg cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagagTATGTAAATAAGAAGGAACAGGAGTCTGAGCGTGGACA-GAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAggtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from CESAR agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAg cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagagTATGTAAATAAGAAGGAACAGGAGTCTGAGCGTGGACAGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAggtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from Spaln_aa2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTGAGCGTGGACAGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from Spaln_nt2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTGAGCGTGGACAGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from Pairagon AGTATGTGAATAAGAAGGAACAGGAGTCTGAG-GTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTGAGCGTGGACA-GAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from Exonerate_protein2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTGAGCGTGGACAGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from Exonerate_coding2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTGAGCGTGGACAGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from GeneWise AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTGAGCGTGGACAGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg #### Ndufs8_ID194_2 --> 2 - 1 Original Alignment gaCATCTTAATGGACAAAGCCTTCATAGCAGC-GCAGTGGCGGCAACGTACa ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcaggaCATCTTAATGGACAAAGCCTTCATAGCAGTCGCAG-GGCGGCAACATACagtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from CESAR gaCATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACa ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcaggaCATCTTAATGGACAAAGCCTTCATAGCAGTCGCAGGGCGGCAACATACagtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from Spaln_aa2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTCGCAGGGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from Spaln_nt2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTCGCAGGGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from Pairagon GACATCTTAATGGACAAAGCCTTCATAGCAG-CGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTCGCAG-GGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from Exonerate_protein2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTCGCAGGGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from Exonerate_coding2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTCGCAGGGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from GeneWise GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTCGCAGGGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga #### Ndufv1_ID274_8 --> 0 - 1 Original Alignment ACAGACATTGTGAAA-GCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tgttgtggggtgatggctaagatgtctggcttctgctcttttgcccccagACAGACATTGTGAAACGCCATCG-TCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCGTGCCGTGAGggtaaggtttctggaaagattgggatgttgttgctgtgctgttattaacat Alignment from CESAR ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tgttgtggggtgatggctaagatgtctggcttctgctcttttgcccccagACAGACATTGTGAAACGCCATCGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCGTGCCGTGAGggtaaggtttctggaaagattgggatgttgttgctgtgctgttattaacat Alignment from Spaln_aa2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttgtggggtgatggctaagatgtctggcttctgctcttttgcccccagACAGACATTGTGAAACGCCATCGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCGTGCCGTGAGGgtaaggtttctggaaagattgggatgttgttgctgtgctgttattaacat Alignment from Spaln_nt2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttgtggggtgatggctaagatgtctggcttctgctcttttgcccccagACAGACATTGTGAAACGCCATCGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCGTGCCGTGAGGgtaaggtttctggaaagattgggatgttgttgctgtgctgttattaacat Alignment from Pairagon ACAGACATTGTGAAA-GCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttgtggggtgatggctaagatgtctggcttctgctcttttgcccccagACAGACATTGTGAAACGCCATCG-TCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCGTGCCGTGAGGgtaaggtttctggaaagattgggatgttgttgctgtgctgttattaacat Alignment from Exonerate_protein2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttgtggggtgatggctaagatgtctggcttctgctcttttgcccccagACAGACATTGTGAAACGCCATCGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCGTGCCGTGAGGgtaaggtttctggaaagattgggatgttgttgctgtgctgttattaacat Alignment from Exonerate_coding2genome ACAGACATTGTGAAAGC-CATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttgtggggtgatggctaagatgtctggcttctgctcttttgcccccagACAGACATTGTGAAACGCCATCGT-CATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCGTGCCGTGAGGgtaaggtttctggaaagattgggatgttgttgctgtgctgttattaacat Alignment from GeneWise ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttgtggggtgatggctaagatgtctggcttctgctcttttgcccccagACAGACATTGTGAAACGCCATCGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCGTGCCGTGAGGgtaaggtttctggaaagattgggatgttgttgctgtgctgttattaacat #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGG-GACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctataggtGGTGTCACAGGTGGCTGGCGACAACC-CCTTGCTGTGACTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctataggtGGTGTCACAGGTGGCTGGCGACAACCCCTTGCTGTGACTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctatagGTGGTGTCACAGGTGGCTGGCGACAACCCCTTGCTGTGACTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctatagGTGGTGTCACAGGTGGCTGGCGACAACCCCTTGCTGTGACTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from Pairagon GTGGTGTCACAGGTGGCTGG-GACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctatagGTGGTGTCACAGGTGGCTGGCGACAACC-CCTTGCTGTGACTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctatagGTGGTGTCACAGGTGGCTGGCGACAACCCCTTGCTGTGACTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctatagGTGGTGTCACAGGTGGCTGGCGACAACCCCTTGCTGTGACTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggcacagtgggagagccatgacatgatagcacttcttttctatagGTGGTGTCACAGGTGGCTGGCGACAACCCCTTGCTGTGACTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtatgtgacctcaaactcccttaaactcctctcagcctgggagtgttccc #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGT-TCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTCTCAG-ATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTcagtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTCTCAGATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTcagtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTCTCAGATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTCTCAGATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGT-TCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTCTCAGA-TTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTCTCAGATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTCTCAGATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTCTCAGATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTC-TCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagagGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGCTAGTGATGGTTCTTTCCTCCT-GCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCagtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagagGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGCTAGTGATGGTTCTTTCCTCCTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCagtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGCTAGTGATGGTTCTTTCCTCCTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGCTAGTGATGGTTCTTTCCTCCTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGCTAGTGATGGTTCTTTCCTCCTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGCTAGTGATGGTTCTTTCCTCCTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGCTAGTGATGGTTCTTTCCTCCTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGGGCTAGTGATGGTTCTTTCCTCCTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTC-TGTGATAAGGTGCAAAAAg caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagagTCTCCAGGGGCCTTGAACCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCCTGTG-GAAGGTGCAAAAAggtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from CESAR agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagagTCTCCAGGGGCCTTGAACCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCCTGTGGAAGGTGCAAAAAggtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCCTGTGGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCCTGTGGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from Pairagon AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCT-CTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCCTGTGG-AAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCCTGTGGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCCTGTGGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCCTGTGGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGG-TTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagacGACATTGAGGTTCGGCTTCTATG-GGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagacGACATTGAGGTTCGGCTTCTATGGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGCTTCTATGGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGCTTCTATGGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from Pairagon ACGACATTGAGGTTCGG-TTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGCTTCTATG-GGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGCTTCTATGGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGCTTCTATGGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGCTTCTATGGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTAC-AACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tctgggagagtcctggatggcacctcactgactaacctctttcctgacaggtGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCT-CCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAggtaaggctcaggaatgctgggggttagcatgcaccctctttcttttggtc Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tctgggagagtcctggatggcacctcactgactaacctctttcctgacaggtGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTCCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAggtaaggctcaggaatgctgggggttagcatgcaccacagtgctgttctgc Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTCCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccctctttcttttggtc Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTCCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccctctttcttttggtc Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTCCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccctctttcttttggtc Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTCCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccctctttcttttggtc Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTCCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcaccctctttcttttggtc Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGA--------------------------------------------------- tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTCCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGGTAAGGCTCAGGAATGCTGGGGGTTAGCATGCACCCTCTTTCTTTTGGTC #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTC-ACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagcCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCCACCA-CCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagcCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCCACCACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCCACCACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCCACCACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCCACCACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCCACCACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCCACCACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCCACCACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACAC-CTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcaggaCTATACCCTGTACACCCTGGCAG-CCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcaggaCTATACCCTGTACACCCTGGCAGCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCCTGGCAGCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCCTGGCAGCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Pairagon GACTATACCCTGTACA-CCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCCTGGCAG-CCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCCTGGCAGCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCCTGGCAGCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCCTGGCAGCCATGCCCGAAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAAT-GCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATCGCCCGGACCT-TGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTggtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATCGCCCGGACCTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTggtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATCGCCCGGACCTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATCGCCCGGACCTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Pairagon CTCCATGCTAATGTGAAT-GCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATCGCCCGGACC-TTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATCGCCCGGACCTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATCGCCCGGACCTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATCGCCCGGACCTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCT-CTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatctaggagcctccactagtctctttgagcttgttttgtgtattgcaggtGCAGATATCCATACAGAGAATGAGGAGCCTCCTGT-CCCACTGCCCTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtatagccacccttgcaatagatgtactgaggtggggactggggacctcc Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatctaggagcctccactagtctctttgagcttgttttgtgtattgcaggtGCAGATATCCATACAGAGAATGAGGAGCCTCCTGTCCCACTGCCCTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtatagccacccttgcaatagatgtactgaggtggggactggggacctcc Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatctaggagcctccactagtctctttgagcttgttttgtgtattgcagGTGCAGATATCCATACAGAGAATGAGGAGCCTCCTGTCCCACTGCCCTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtatagccacccttgcaatagatgtactgaggtggggactggggacctcc Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatctaggagcctccactagtctctttgagcttgttttgtgtattgcagGTGCAGATATCCATACAGAGAATGAGGAGCCTCCTGTCCCACTGCCCTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtatagccacccttgcaatagatgtactgaggtggggactggggacctcc Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatctaggagcctccactagtctctttgagcttgttttgtgtattgcagGTGCAGATATCCATACAGAGAATGAGGAGCCTCCTGTCCCACTGCCCTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtatagccacccttgcaatagatgtactgaggtggggactggggacctcc Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatctaggagcctccactagtctctttgagcttgttttgtgtattgcagGTGCAGATATCCATACAGAGAATGAGGAGCCTCCTGTCCCACTGCCCTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtatagccacccttgcaatagatgtactgaggtggggactggggacctcc Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatctaggagcctccactagtctctttgagcttgttttgtgtattgcagGTGCAGATATCCATACAGAGAATGAGGAGCCTCCTGTCCCACTGCCCTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtatagccacccttgcaatagatgtactgaggtggggactggggacctcc Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatctaggagcctccactagtctctttgagcttgttttgtgtattgcagGTGCAGATATCCATACAGAGAATGAGGAGCCTCCTGTCCCACTGCCCTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtatagccacccttgcaatagatgtactgaggtggggactggggacctcc #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTAAAT-GCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATCGCCGCTC-GAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAggtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from CESAR GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATCGCCGCTCGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAggtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATCGCCGCTCGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATCGCCGCTCGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Pairagon GTGAAGACTCTGCTGCTAAAT-GCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATCGCCGCTC-GAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATCGCCGCTCGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATCGCCGCTCGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATCGCCGCTCGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAAC-CTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCCTGGAAC-ACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCCTGGAACACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCCTGGAACACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCCTGGAACACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCCTGGAACACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCCTGGAACACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCCTGGAACACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCCTGGAACACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag #### Nmrk1_ID4439_5 --> 1 - 2 Original Alignment gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAA-GAATGTAAGAGGAGAAGGag atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccaggCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACCAAT-TAAGAGGAGAAGGaggtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from CESAR gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccaggCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACCAATTAAGAGGAGAAGGaggtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from Spaln_aa2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACCAATTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from Spaln_nt2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACCAATTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from Pairagon GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACCAATTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from Exonerate_protein2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACCAATTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from Exonerate_coding2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACCAATTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from GeneWise GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACCAATTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTAC-AAGACACTGTTCACATTACATGCAg gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaataggtGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCTTCCCAGACACTGT-CACATTACATGCAggtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from CESAR gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaataggtGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCTTCCCAGACACTGTCACATTACATGCAggtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCTTCCCAGACACTGTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCTTCCCAGACACTGTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Pairagon GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTC-TACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCTTCCCAGACACTG-TCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCTTCCCAGACACTGTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCTTCCCAGACACTGTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from GeneWise GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCTTCCCAGACACTGTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTAC-TGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACCTGCATGCTAT-CTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTaggtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACCTGCATGCTATCTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTaggtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACCTGCATGCTATCTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACCTGCATGCTATCTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTA-CTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACCTGCATGCTAT-CTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACCTGCATGCTATCTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACCTGCATGCTATCTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACCTGCATGCTATCTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag #### Npas4_ID776_5 --> 1 - 1 Original Alignment tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAA-GCTTCTTCTCAACACTACCGCCTGt ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagtGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAACGCTTCTT-TCAACACTACCGCCTGtgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from CESAR tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagtGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAACGCTTCTTTCAACACTACCGCCTGtgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from Spaln_aa2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAACGCTTCTTTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from Spaln_nt2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAACGCTTCTTTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from Pairagon TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAA-GCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAACGCTTCTT-TCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from Exonerate_protein2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAACGCTTCTTTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from Exonerate_coding2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAACGCTTCTTTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from GeneWise TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAACGCTTCTTTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat #### Npas4_ID777_4 --> 2 - 2 Original Alignment atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTC-TGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagatCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCCTGCGCCC-ACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAaggtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from CESAR atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagatCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCCTGCGCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAaggtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from Spaln_aa2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCCTGCGCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from Spaln_nt2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCCTGCGCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from Pairagon ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCCTGCGCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from Exonerate_protein2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCCTGCGCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from Exonerate_coding2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCCTGCGCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc Alignment from GeneWise ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctctcctccaatgcccaccctcttagtacatggtctttgaaccccaacagATCGCCTTTTCCATTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCTGGAAACAAACTGGTGCTTATACGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACTGCTTTCCTGCGCCCACTGGAGCCAAGACCCCGCCCAGGGCCTGGTCCTGGCCCTGGCTCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtatgtccaaagtgttaggcgagaaagaagggaactttagatttgtgatc #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGC-CAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCCAGCAGC-CACCATGCCCTCCGCTCTGGATGCTggtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCCAGCAGCCACCATGCCCTCCGCTCTGGATGCTggtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCCAGCAGCCACCATGCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCCAGCAGCCACCATGCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from Pairagon GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCG-CCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCCAGCAGC-CACCATGCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCCAGCAGCCACCATGCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from Exonerate_coding2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCCAGCAGCCACCATGCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCCAGCAGCCACCATGCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa #### Nt5c2_ID10037_16 --> 1 - 0 Original Alignment gCACCTGGACAGCAGTAGCAATGAG-CGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG aacatagggaggtgtgctctcctagagagtttctgtatgttttcttacaggCACCTGGACAGCAGTAGCAATGAACCACC-GGACATTAGTTCTATCCAGAGACGGATTAAGgtaagaagatgggatttgggaaagaatgtggggagtaagttgtctgagtc Alignment from CESAR gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG aacatagggaggtgtgctctcctagagagtttctgtatgttttcttacaggCACCTGGACAGCAGTAGCAATGAACCACCGGACATTAGTTCTATCCAGAGACGGATTAAGgtaagaagatgggatttgggaaagaatgtggggagtaagttgtctgagtc Alignment from Spaln_aa2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG aacatagggaggtgtgctctcctagagagtttctgtatgttttcttacagGCACCTGGACAGCAGTAGCAATGAACCACCGGACATTAGTTCTATCCAGAGACGGATTAAGgtaagaagatgggatttgggaaagaatgtggggagtaagttgtctgagtc Alignment from Spaln_nt2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG aacatagggaggtgtgctctcctagagagtttctgtatgttttcttacagGCACCTGGACAGCAGTAGCAATGAACCACCGGACATTAGTTCTATCCAGAGACGGATTAAGgtaagaagatgggatttgggaaagaatgtggggagtaagttgtctgagtc Alignment from Pairagon GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG aacatagggaggtgtgctctcctagagagtttctgtatgttttcttacagGCACCTGGACAGCAGTAGCAATGAACCACCGGACATTAGTTCTATCCAGAGACGGATTAAGgtaagaagatgggatttgggaaagaatgtggggagtaagttgtctgagtc Alignment from Exonerate_protein2genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG aacatagggaggtgtgctctcctagagagtttctgtatgttttcttacagGCACCTGGACAGCAGTAGCAATGAACCACCGGACATTAGTTCTATCCAGAGACGGATTAAGgtaagaagatgggatttgggaaagaatgtggggagtaagttgtctgagtc Alignment from Exonerate_coding2genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG aacatagggaggtgtgctctcctagagagtttctgtatgttttcttacagGCACCTGGACAGCAGTAGCAATGAACCACCGGACATTAGTTCTATCCAGAGACGGATTAAGgtaagaagatgggatttgggaaagaatgtggggagtaagttgtctgagtc Alignment from GeneWise GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG aacatagggaggtgtgctctcctagagagtttctgtatgttttcttacagGCACCTGGACAGCAGTAGCAATGAACCACCGGACATTAGTTCTATCCAGAGACGGATTAAGgtaagaagatgggatttgggaaagaatgtggggagtaagttgtctgagtc #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTC-CTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagtTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCCTGCAGC-AGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagtTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCCTGCAGCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCCTGCAGCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCCTGCAGCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGT-CCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCCTGCAG-CAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCCTGCAGCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCCTGCAGCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCCTGCAGCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg #### Nxf1_ID2347_7 --> 0 - 1 Original Alignment CTGATCATGAGCAAACGATATGATGGCAACCAA-CAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg ctttcaacctccatcattgacgactaaaaataaaatcctttcttctctagCTGATCATGAGCAAACAATATGATGGCAACCAACCAAGCACTTG-CCTCAAGGAGCTCCGCTCAGACCCAggtaacgctgacaacaatagttcagactaattgaggaggggaaacaattgg Alignment from CESAR CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg ctttcaacctccatcattgacgactaaaaataaaatcctttcttctctagCTGATCATGAGCAAACAATATGATGGCAACCAACCAAGCACTTGCCTCAAGGAGCTCCGCTCAGACCCAggtaacgctgacaacaatagttcagactaattgaggaggggaaacaattgg Alignment from Spaln_aa2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ctttcaacctccatcattgacgactaaaaataaaatcctttcttctctagCTGATCATGAGCAAACAATATGATGGCAACCAACCAAGCACTTGCCTCAAGGAGCTCCGCTCAGACCCAGgtaacgctgacaacaatagttcagactaattgaggaggggaaacaattgg Alignment from Spaln_nt2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ctttcaacctccatcattgacgactaaaaataaaatcctttcttctctagCTGATCATGAGCAAACAATATGATGGCAACCAACCAAGCACTTGCCTCAAGGAGCTCCGCTCAGACCCAGgtaacgctgacaacaatagttcagactaattgaggaggggaaacaattgg Alignment from Pairagon CTGATCATGAGCAAACGATATGATGGCAACCAA-CAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ctttcaacctccatcattgacgactaaaaataaaatcctttcttctctagCTGATCATGAGCAAACAATATGATGGCAACCAACCAAGCACTTG-CCTCAAGGAGCTCCGCTCAGACCCAGgtaacgctgacaacaatagttcagactaattgaggaggggaaacaattgg Alignment from Exonerate_protein2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ctttcaacctccatcattgacgactaaaaataaaatcctttcttctctagCTGATCATGAGCAAACAATATGATGGCAACCAACCAAGCACTTGCCTCAAGGAGCTCCGCTCAGACCCAGgtaacgctgacaacaatagttcagactaattgaggaggggaaacaattgg Alignment from Exonerate_coding2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ctttcaacctccatcattgacgactaaaaataaaatcctttcttctctagCTGATCATGAGCAAACAATATGATGGCAACCAACCAAGCACTTGCCTCAAGGAGCTCCGCTCAGACCCAGgtaacgctgacaacaatagttcagactaattgaggaggggaaacaattgg Alignment from GeneWise CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ctttcaacctccatcattgacgactaaaaataaaatcctttcttctctagCTGATCATGAGCAAACAATATGATGGCAACCAACCAAGCACTTGCCTCAAGGAGCTCCGCTCAGACCCAGgtaacgctgacaacaatagttcagactaattgaggaggggaaacaattgg #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTA-AATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTACAATC-CTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from CESAR CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTACAATCCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTACAATCCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from Spaln_nt2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTACAATCCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from Pairagon CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTACAATCCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from Exonerate_protein2genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTACAATCCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from Exonerate_coding2genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTACAATCCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from GeneWise CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTACAATCCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta #### Nxf1_ID2353_13 --> 0 - 2 Original Alignment GGAAGCTATTTTGGAACCGAGAACCTAAAGAGT-CTGGTCCTGCGCTTCTTGCAGca gagaggagagaatattggtcctgtgatctccctatttaaaatttccccagGGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCCTGGTCC-GCGCTTCTTGCAGcagtacacatcccagggtcccatagtgctcaggataatgactggcctatgca Alignment from CESAR GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gagaggagagaatattggtcctgtgatctccctatttaaaatttccccagGGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCCTGGTCCGCGCTTCTTGCAGcagtacacatcccagggtcccatagtgctcaggataatgactggcctatgca Alignment from Spaln_aa2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagaggagagaatattggtcctgtgatctccctatttaaaatttccccagGGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCCTGGTCCGCGCTTCTTGCAGCAgtacacatcccagggtcccatagtgctcaggataatgactggcctatgca Alignment from Spaln_nt2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagaggagagaatattggtcctgtgatctccctatttaaaatttccccagGGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCCTGGTCCGCGCTTCTTGCAGCAgtacacatcccagggtcccatagtgctcaggataatgactggcctatgca Alignment from Pairagon GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagaggagagaatattggtcctgtgatctccctatttaaaatttccccagGGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCCTGGTCCGCGCTTCTTGCAGCAgtacacatcccagggtcccatagtgctcaggataatgactggcctatgca Alignment from Exonerate_protein2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagaggagagaatattggtcctgtgatctccctatttaaaatttccccagGGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCCTGGTCCGCGCTTCTTGCAGCAgtacacatcccagggtcccatagtgctcaggataatgactggcctatgca Alignment from Exonerate_coding2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagaggagagaatattggtcctgtgatctccctatttaaaatttccccagGGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCCTGGTCCGCGCTTCTTGCAGCAgtacacatcccagggtcccatagtgctcaggataatgactggcctatgca Alignment from GeneWise GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagaggagagaatattggtcctgtgatctccctatttaaaatttccccagGGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCCTGGTCCGCGCTTCTTGCAGCAgtacacatcccagggtcccatagtgctcaggataatgactggcctatgca #### Nxf1_ID2355_15 --> 1 - 1 Original Alignment aAAAAACTTAGCTGAATAT-GTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagaAAAAACTTAGCTGAATATCGTCAAAG-CTGTAGAAATGTAAAGAAGCTTAAAGAACCCagtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from CESAR aAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagaAAAAACTTAGCTGAATATCGTCAAAGCTGTAGAAATGTAAAGAAGCTTAAAGAACCCagtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from Spaln_aa2Genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATCGTCAAAGCTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from Spaln_nt2Genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATCGTCAAAGCTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from Pairagon AAAAAACTTAGCTGAATAT-GTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATCGTCAAAG-CTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from Exonerate_protein2genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATCGTCAAAGCTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from Exonerate_coding2genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATCGTCAAAGCTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from GeneWise AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATCGTCAAAGCTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTGTGTTTT-TCTGTCAATGGAGTCTTCAAGGAAg gctctagtagttggaaacctccattactcatggcctttccatgtacccagAGCACATTACTGTGTCTTCTCTGTCA-TGGAGTCTTCAAAGAAggtaggaatttttagttctgaacctctgccactatcttagttttccagcca Alignment from CESAR AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAg gctctagtagttggaaacctccattactcatggcctttccatgtacccagAGCACATTACTGTGTCTTCTCTGTCATGGAGTCTTCAAAGAAggtaggaatttttagttctgaacctctgccactatcttagttttccagcca Alignment from Spaln_aa2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattactcatggcctttccatgtacccagAGCACATTACTGTGTCTTCTCTGTCATGGAGTCTTCAAAGAAGgtaggaatttttagttctgaacctctgccactatcttagttttccagcca Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattactcatggcctttccatgtacccagAGCACATTACTGTGTCTTCTCTGTCATGGAGTCTTCAAAGAAGgtaggaatttttagttctgaacctctgccactatcttagttttccagcca Alignment from Pairagon AGCACATTACTGTGT-TTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattactcatggcctttccatgtacccagAGCACATTACTGTGTCTTCTCTGTC-ATGGAGTCTTCAAAGAAGgtaggaatttttagttctgaacctctgccactatcttagttttccagcca Alignment from Exonerate_protein2genome gctctagtagttggaaacctccattactcatggcctttccatgtacccagagcacattactgtgtcttctctgtcatggagtcttcaaagaaggtaggaatttttagttctgaacctctgccactatcttagttttccagcca Alignment from Exonerate_coding2genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattactcatggcctttccatgtacccagAGCACATTACTGTGTCTTCTCTGTCATGGAGTCTTCAAAGAAGgtaggaatttttagttctgaacctctgccactatcttagttttccagcca Alignment from GeneWise gctctagtagttggaaacctccattactcatggcctttccatgtacccagagcacattactgtgtcttctctgtcatggagtcttcaaagaaggtaggaatttttagttctgaacctctgccactatcttagttttccagcca #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTC-ATTGCTGTTCCTGCCAGCAATTCAgg tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagtgGACGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCCATTGCTG-TCCTGCCAGCAATTCAgggtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagtgGACGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCCATTGCTGTCCTGCCAGCAATTCAgggtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCCATTGCTGTCCTGCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCCATTGCTGTCCTGCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTT-CATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCCATTGCTG-TCCTGCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from Exonerate_protein2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCCATTGCTGTCCTGCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from Exonerate_coding2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCCATTGCTGTCCTGCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc Alignment from GeneWise TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tggagcttgagtgactataaggagccggtttcccccctaaccctgctcagTGGACGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCCATTGCTGTCCTGCCAGCAATTCAGGgtgagtagtcaacttattagattgagtactatcatcagtgctaggaaggc #### Osbp_ID3347_6 --> 1 - 0 Original Alignment aCGTACTGGCAGC-AATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagaCGTACTGGCAGCCAATATCAGTG-GCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from CESAR aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagaCGTACTGGCAGCCAATATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from Spaln_aa2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCCAATATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from Spaln_nt2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCCAATATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from Pairagon ACGTACTGGCAG-CAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCCAATATCAGT-GGCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from Exonerate_protein2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCCAATATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from Exonerate_coding2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCCAATATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from GeneWise ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCCAATATCAGTGGCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGAC-CTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCCTGCTGGCCT-CTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCCTGCTGGCCTCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCCTGCTGGCCTCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCCTGCTGGCCTCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGA-CCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCCTGCTGGCCT-CTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCCTGCTGGCCTCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCCTGCTGGCCTCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCCTGCTGGCCTCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccaaaccaggtcaaggtcgtgctgttggtatgttttacagatCGCTCCCCAGATATTGATAACTACTCTGAAGAACGAGGAAG-AAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtaaggtcctgtgggtccctcctcacagtggatgagtgagaggtccctgg Alignment from CESAR atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccaaaccaggtcaaggtcgtgctgttggtatgttttacagatCGCTCCCCAGATATTGATAACTACTCTGAAGAACGAGGAAGAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtaaggtcctgtgggtccctcctcacagtggatgagtgagaggtccctgg Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccaaaccaggtcaaggtcgtgctgttggtatgttttacagATCGCTCCCCAGATATTGATAACTACTCTGAAGAACGAGGAAGAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtaaggtcctgtgggtccctcctcacagtggatgagtgagaggtccctgg Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccaaaccaggtcaaggtcgtgctgttggtatgttttacagATCGCTCCCCAGATATTGATAACTACTCTGAAGAACGAGGAAGAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtaaggtcctgtgggtccctcctcacagtggatgagtgagaggtccctgg Alignment from Pairagon ATCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccaaaccaggtcaaggtcgtgctgttggtatgttttacagATCGCTCCCCAGATATTGATAACTACTCTGAAGAACGAGGAAG-AAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtaaggtcctgtgggtccctcctcacagtggatgagtgagaggtccctgg Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccaaaccaggtcaaggtcgtgctgttggtatgttttacagATCGCTCCCCAGATATTGATAACTACTCTGAAGAACGAGGAAGAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtaaggtcctgtgggtccctcctcacagtggatgagtgagaggtccctgg Alignment from Exonerate_coding2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccaaaccaggtcaaggtcgtgctgttggtatgttttacagATCGCTCCCCAGATATTGATAACTACTCTGAAGAACGAGGAAGAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtaaggtcctgtgggtccctcctcacagtggatgagtgagaggtccctgg Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccaaaccaggtcaaggtcgtgctgttggtatgttttacagATCGCTCCCCAGATATTGATAACTACTCTGAAGAACGAGGAAGAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtaaggtcctgtgggtccctcctcacagtggatgagtgagaggtccctgg #### Pcgf6_ID10084_3 --> 2 - 2 Original Alignment ttTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGC-CCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag aaatgtgaaggtaaaccatcataaattagcatcctttctctgccccacagttTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCCAAAAT-CAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAaggtatgtatatacacacttaaactgtatctgcgtttaaaatcattgttgcc Alignment from CESAR ttTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag aaatgtgaaggtaaaccatcataaattagcatcctttctctgccccacagttTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCCAAAATCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAaggtatgtatatacacacttaaactgtatctgcgtttaaaatcattgttgcc Alignment from Spaln_aa2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG aaatgtgaaggtaaaccatcataaattagcatcctttctctgccccacagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCCAAAATCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtatgtatatacacacttaaactgtatctgcgtttaaaatcattgttgcc Alignment from Spaln_nt2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG aaatgtgaaggtaaaccatcataaattagcatcctttctctgccccacagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCCAAAATCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtatgtatatacacacttaaactgtatctgcgtttaaaatcattgttgcc Alignment from Pairagon TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG aaatgtgaaggtaaaccatcataaattagcatcctttctctgccccacagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCCAAAATCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtatgtatatacacacttaaactgtatctgcgtttaaaatcattgttgcc Alignment from Exonerate_protein2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG aaatgtgaaggtaaaccatcataaattagcatcctttctctgccccacagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCCAAAATCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtatgtatatacacacttaaactgtatctgcgtttaaaatcattgttgcc Alignment from Exonerate_coding2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG aaatgtgaaggtaaaccatcataaattagcatcctttctctgccccacagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCCAAAATCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtatgtatatacacacttaaactgtatctgcgtttaaaatcattgttgcc Alignment from GeneWise TTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG aaatgtgaaggtaaaccatcataaattagcatcctttctctgccccacagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATAGTAACAGATGCCCCAAAATCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtatgtatatacacacttaaactgtatctgcgtttaaaatcattgttgcc #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACC-TCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagaCTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCCTCCCTCA-CAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAggtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagaCTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCCTCCCTCACAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAggtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCCTCCCTCACAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCCTCCCTCACAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGA-CCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCCTCCCTCA-CAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCCTCCCTCACAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCCTCCCTCACAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCCTCCCTCACAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc #### Pcnxl3_ID1161_32 --> 0 - 2 Original Alignment GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCT-GAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTCGAGCGAG-CAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGaggtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from CESAR GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTCGAGCGAGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGaggtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Spaln_aa2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTCGAGCGAGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Spaln_nt2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTCGAGCGAGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Pairagon GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCT-GAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTCGAGCG-AGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Exonerate_protein2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTCGAGCGAGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Exonerate_coding2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTCGAGCGAGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from GeneWise GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTCGAGCGAGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca #### Pcnxl3_ID1163_30 --> 1 - 0 Original Alignment cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTG-GTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagcCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGCGTAGCCC-CGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from CESAR cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagcCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGCGTAGCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from Spaln_aa2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGCGTAGCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from Spaln_nt2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGCGTAGCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from Pairagon CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTG-GTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGCGTAGCCCC-GGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from Exonerate_protein2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGCGTAGCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from Exonerate_coding2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGCGTAGCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct Alignment from GeneWise CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG aacaaacttctcctggctccccctgttgagactactgcatatttttccagCCTAGAGCCCTTCCTCTACGGCCTGCATGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGATGAGTGGGTCTTTGCTGACATGGATCTACTTCACCGAGTGCGTAGCCCCGGGGTTCGCATGGCCCTCAAGCTTCACCAGgtgagaggtatgggccaggcagagtaggaggcaggtgcgagataatgcct #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGAC-TGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACCTGGAATT-ACCATTGGTTACATTGTGCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCGTCACACAGTATGTCTGCCaggtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACCTGGAATTACCATTGGTTACATTGTGCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCGTCACACAGTATGTCTGCCaggtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACCTGGAATTACCATTGGTTACATTGTGCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCGTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACCTGGAATTACCATTGGTTACATTGTGCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCGTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACCTGGAATTACCATTGGTTACATTGTGCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCGTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACCTGGAATTACCATTGGTTACATTGTGCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCGTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACCTGGAATTACCATTGGTTACATTGTGCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCGTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgtgtcagctatcacacacttgttttcacagCCCGTGGACCAGGACCTGGAATTACCATTGGTTACATTGTGCTTTGGCCTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCGTCACACAGTATGTCTGCCAGgtaactgcccacaggcagcagaagagccccacagcccattggtgcactcc #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTG-CAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcaggtGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCACCTGACACGCTCACTGCCAGCACA-GCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGggtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcaggtGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCACCTGACACGCTCACTGCCAGCACAGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGggtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCACCTGACACGCTCACTGCCAGCACAGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCACCTGACACGCTCACTGCCAGCACAGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTG-CAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCACCTGACACGCTCACTGCCAGCACA-GCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCACCTGACACGCTCACTGCCAGCACAGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCACCTGACACGCTCACTGCCAGCACAGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacttgacatccatgccccttcctctgtgcctgcagGTGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCACCTGACACGCTCACTGCCAGCACAGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTCGTGCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTGAGTTCCGGGgtgaggcagcctgagatgggacactagtagggggcagagcaagcaggcat #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTG-ATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGCATCGCCG-GCTCACCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGCATCGCCGGCTCACCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGCATCGCCGGCTCACCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGCATCGCCGGCTCACCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTG-ATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGCATCGCCG-GCTCACCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGCATCGCCGGCTCACCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGCATCGCCGGCTCACCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGCATCGCCGGCTCACCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAAC-ACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagtaTTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACCACCTGCC-TATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAggtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagtaTTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACCACCTGCCTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAggtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACCACCTGCCTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACCACCTGCCTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAA-CACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACCACCTGCCT-ATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACCACCTGCCTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACCACCTGCCTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACCACCTGCCTATGTACCTCCTTGAACAGATAGACATGCATGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag #### Pcnxl3_ID1184_9 --> 2 - 2 Original Alignment gtGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCT-GTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCtg atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcaggtGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTCGTGAGTCAGC-AGGCGAGCAGGCTGCCAATGGAGCCtggtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from CESAR gtGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCtg atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcaggtGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTCGTGAGTCAGCAGGCGAGCAGGCTGCCAATGGAGCCtggtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from Spaln_aa2Genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTCGTGAGTCAGCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from Spaln_nt2Genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTCGTGAGTCAGCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from Pairagon GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCT-GTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTCGTGAGTCAG-CAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from Exonerate_protein2genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTCGTGAGTCAGCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from Exonerate_coding2genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTCGTGAGTCAGCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac Alignment from GeneWise GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG atgcccttgtagtctcggaccctgatagcagtgaagctattccatttcagGTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTCGTGAGTCAGCAGGCGAGCAGGCTGCCAATGGAGCCTGgtgaatctccagtgagcttcttgagagcccatccggttgcatttctgaac #### Pcnxl3_ID1185_8 --> 1 - 1 Original Alignment cAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGT-GCTGTGCACTATTTCTACGACGAGAGTg gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagcAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATTTTCATGACACCTCTGAAGGTCGCTGTGC-CTATTTCTACGATGAGAGTggtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from CESAR cAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTg gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagcAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATTTTCATGACACCTCTGAAGGTCGCTGTGCCTATTTCTACGATGAGAGTggtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from Spaln_aa2Genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATTTTCATGACACCTCTGAAGGTCGCTGTGCCTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from Spaln_nt2Genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATTTTCATGACACCTCTGAAGGTCGCTGTGCCTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from Pairagon CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGT-GCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATTTTCATGACACCTCTGAAGGTCGCTGTGC-CTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from Exonerate_protein2genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATTTTCATGACACCTCTGAAGGTCGCTGTGCCTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from Exonerate_coding2genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATTTTCATGACACCTCTGAAGGTCGCTGTGCCTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from GeneWise CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATTTTCATGACACCTCTGAAGGTCGCTGTGCCTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAA-CAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagacATCAAGGAGCTGGTACGGGAACCAGGGCAGCA-CAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGagtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagacATCAAGGAGCTGGTACGGGAACCAGGGCAGCACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGagtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACCAGGGCAGCACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACCAGGGCAGCACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAA-CAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACCAGGGCAGC-ACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACCAGGGCAGCACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACCAGGGCAGCACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACCAGGGCAGCACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAg tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGCATGGAGG-TTCTGGGCCCCTCAGAggtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from CESAR GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAg tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGCATGGAGGTTCTGGGCCCCTCAGAggtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Spaln_aa2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGCATGGAGGTTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Spaln_nt2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGCATGGAGGTTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Pairagon GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGCATGGAGG-TTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Exonerate_protein2genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGCATGGAGGTTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Exonerate_coding2genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGCATGGAGGTTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from GeneWise GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGCATGGAGGTTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCT-GTGTTTGGCTTCAACCAGGTTTCG gaaggaactgtaaagggagcacaactgattttctctttttcacacaaaaggGATCCTGGTGTAGAGATGACGGTGTTCCAGAAGGTTAGCTCCACACCCCCTGTACGCTGCAGTTCCCAGCATTCTCGTGA-AGGCTTCAACCATGTTTCAgtaagcaggctccccttgtcactgtcctgggagtcagcccttggtgtggg Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG gaaggaactgtaaagggagcacaactgattttctctttttcacacaaaaggGATCCTGGTGTAGAGATGACGGTGTTCCAGAAGGTTAGCTCCACACCCCCTGTACGCTGCAGTTCCCAGCATTCTCGTGAAGGCTTCAACCATGTTTCAgtaagcaggctccccttgtcactgtcctgggagtcagcccttggtgtggg Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG gaaggaactgtaaagggagcacaactgattttctctttttcacacaaaagGGATCCTGGTGTAGAGATGACGGTGTTCCAGAAGGTTAGCTCCACACCCCCTGTACGCTGCAGTTCCCAGCATTCTCGTGAAGGCTTCAACCATGTTTCAgtaagcaggctccccttgtcactgtcctgggagtcagcccttggtgtggg Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG gaaggaactgtaaagggagcacaactgattttctctttttcacacaaaagGGATCCTGGTGTAGAGATGACGGTGTTCCAGAAGGTTAGCTCCACACCCCCTGTACGCTGCAGTTCCCAGCATTCTCGTGAAGGCTTCAACCATGTTTCAgtaagcaggctccccttgtcactgtcctgggagtcagcccttggtgtggg Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG gaaggaactgtaaagggagcacaactgattttctctttttcacacaaaagGGATCCTGGTGTAGAGATGACGGTGTTCCAGAAGGTTAGCTCCACACCCCCTGTACGCTGCAGTTCCCAGCATTCTCGTGAAGGCTTCAACCATGTTTCAgtaagcaggctccccttgtcactgtcctgggagtcagcccttggtgtggg Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG gaaggaactgtaaagggagcacaactgattttctctttttcacacaaaagGGATCCTGGTGTAGAGATGACGGTGTTCCAGAAGGTTAGCTCCACACCCCCTGTACGCTGCAGTTCCCAGCATTCTCGTGAAGGCTTCAACCATGTTTCAgtaagcaggctccccttgtcactgtcctgggagtcagcccttggtgtggg Alignment from Exonerate_coding2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG gaaggaactgtaaagggagcacaactgattttctctttttcacacaaaagGGATCCTGGTGTAGAGATGACGGTGTTCCAGAAGGTTAGCTCCACACCCCCTGTACGCTGCAGTTCCCAGCATTCTCGTGAAGGCTTCAACCATGTTTCAgtaagcaggctccccttgtcactgtcctgggagtcagcccttggtgtggg Alignment from GeneWise GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG gaaggaactgtaaagggagcacaactgattttctctttttcacacaaaagGGATCCTGGTGTAGAGATGACGGTGTTCCAGAAGGTTAGCTCCACACCCCCTGTACGCTGCAGTTCCCAGCATTCTCGTGAAGGCTTCAACCATGTTTCAgtaagcaggctccccttgtcactgtcctgggagtcagcccttggtgtggg #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTT-ATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttaggtGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCCTTGGCCGTG-CCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttaggtGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCCTTGGCCGTGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCCTTGGCCGTGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCCTTGGCCGTGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTT-ATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCCTTGGCCGT-GCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCCTTGGCCGTGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCCTTGGCCGTGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcaggacccaggagtctaattccctctcttctgtcttttagGTGAAATTGCCATCCGAGTGTTTCGTGCGTGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTCCTTGGCCGTGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtgatgccagggtttctgcaagctgggtaggatcttgtgttacgcc #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGA-GTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGACGTCCGGT-CATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAggtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGACGTCCGGTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAggtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGACGTCCGGTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGACGTCCGGTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGACGTCCGGTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGACGTCCGGTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCT gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGACGTCCGGTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATgcaggtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGACGTCCGGTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAG-AATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATG-GTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from Pairagon GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc Alignment from GeneWise GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG gctcctacctctgggcctagcatccttacttaaagtcgatgctctttcagGTGAAACCATCCTCCAAGATTGTGGGAGACCTGGCCCAGTTCATGGTGCAGCAATGGTTAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATCCCCCATGGAGGTTTCCCTAAGCCCTTTCGTTCTAAGgtgagacaggtgcatcatgatgagacaggggcttgcaacaagaacctggc #### Pcx_ID569_18 --> 0 - 0 Original Alignment GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCC-ATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG gacaggggcttgcaacaagaacctggccgcctttggatttttccctgcagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTGCCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCATGGGGAAGAGGTGACGCAAGAGGACGTCCTCTCTGCAGCCCATGT-CCCGGATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaggcggttcccgtgtttgttttcattcatccccagggcctacagtaac Alignment from CESAR GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG gacaggggcttgcaacaagaacctggccgcctttggatttttccctgcagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTGCCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCATGGGGAAGAGGTGACGCAAGAGGACGTCCTCTCTGCAGCCCATGTCCCGGATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaggcggttcccgtgtttgttttcattcatccccagggcctacagtaac Alignment from Spaln_aa2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG gacaggggcttgcaacaagaacctggccgcctttggatttttccctgcagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTGCCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCATGGGGAAGAGGTGACGCAAGAGGACGTCCTCTCTGCAGCCCATGTCCCGGATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaggcggttcccgtgtttgttttcattcatccccagggcctacagtaac Alignment from Spaln_nt2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG gacaggggcttgcaacaagaacctggccgcctttggatttttccctgcagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTGCCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCATGGGGAAGAGGTGACGCAAGAGGACGTCCTCTCTGCAGCCCATGTCCCGGATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaggcggttcccgtgtttgttttcattcatccccagggcctacagtaac Alignment from Pairagon GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAG-CCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG gacaggggcttgcaacaagaacctggccgcctttggatttttccctgcagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTGCCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCATGGGGAAGAGGTGACGCAAGAGGACGTCCTCTCTGCAGCCCATGT-CCCGGATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaggcggttcccgtgtttgttttcattcatccccagggcctacagtaac Alignment from Exonerate_protein2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG gacaggggcttgcaacaagaacctggccgcctttggatttttccctgcagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTGCCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCATGGGGAAGAGGTGACGCAAGAGGACGTCCTCTCTGCAGCCCATGTCCCGGATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaggcggttcccgtgtttgttttcattcatccccagggcctacagtaac Alignment from Exonerate_coding2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG gacaggggcttgcaacaagaacctggccgcctttggatttttccctgcagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTGCCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCATGGGGAAGAGGTGACGCAAGAGGACGTCCTCTCTGCAGCCCATGTCCCGGATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaggcggttcccgtgtttgttttcattcatccccagggcctacagtaac Alignment from GeneWise GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG gacaggggcttgcaacaagaacctggccgcctttggatttttccctgcagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTGCCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCATGGGGAAGAGGTGACGCAAGAGGACGTCCTCTCTGCAGCCCATGTCCCGGATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaggcggttcccgtgtttgttttcattcatccccagggcctacagtaac #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTG-GCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcatcaagacttaatctgcctcatttgtgttcttggctttgtagGTTGAGCTGGAACGGGGCAAGACGCTGCACATCAAAGCCCTGCGCTGTAAGTG-CCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTCAAAGACACCCAGGCCATGAAGgtaatgttcaaccagagccagtcaggtggtagggattggcttgacatgct Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcatcaagacttaatctgcctcatttgtgttcttggctttgtagGTTGAGCTGGAACGGGGCAAGACGCTGCACATCAAAGCCCTGCGCTGTAAGTGCCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTCAAAGACACCCAGGCCATGAAGgtaatgttcaaccagagccagtcaggtggtagggattggcttgacatgct Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcatcaagacttaatctgcctcatttgtgttcttggctttgtagGTTGAGCTGGAACGGGGCAAGACGCTGCACATCAAAGCCCTGCGCTGTAAGTGCCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTCAAAGACACCCAGGCCATGAAGgtaatgttcaaccagagccagtcaggtggtagggattggcttgacatgct Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcatcaagacttaatctgcctcatttgtgttcttggctttgtagGTTGAGCTGGAACGGGGCAAGACGCTGCACATCAAAGCCCTGCGCTGTAAGTGCCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTCAAAGACACCCAGGCCATGAAGgtaatgttcaaccagagccagtcaggtggtagggattggcttgacatgct Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTG-GCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcatcaagacttaatctgcctcatttgtgttcttggctttgtagGTTGAGCTGGAACGGGGCAAGACGCTGCACATCAAAGCCCTGCGCTGTAAGTG-CCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTCAAAGACACCCAGGCCATGAAGgtaatgttcaaccagagccagtcaggtggtagggattggcttgacatgct Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcatcaagacttaatctgcctcatttgtgttcttggctttgtagGTTGAGCTGGAACGGGGCAAGACGCTGCACATCAAAGCCCTGCGCTGTAAGTGCCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTCAAAGACACCCAGGCCATGAAGgtaatgttcaaccagagccagtcaggtggtagggattggcttgacatgct Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcatcaagacttaatctgcctcatttgtgttcttggctttgtagGTTGAGCTGGAACGGGGCAAGACGCTGCACATCAAAGCCCTGCGCTGTAAGTGCCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTCAAAGACACCCAGGCCATGAAGgtaatgttcaaccagagccagtcaggtggtagggattggcttgacatgct Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcatcaagacttaatctgcctcatttgtgttcttggctttgtagGTTGAGCTGGAACGGGGCAAGACGCTGCACATCAAAGCCCTGCGCTGTAAGTGCCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTCAAAGACACCCAGGCCATGAAGgtaatgttcaaccagagccagtcaggtggtagggattggcttgacatgct #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCAGCTCCATTCCTTAGA-TATCATGACATCAAAATAGGGACAGTAGTAAAG ggcaaccctatccatacactttgtagtctttgaacatgtgacttcttcagaTCAATTATTGCAGCTCCATTCCTTAGACTATCATG-CATCAAAATAGGGACAGTAGTAAAGgtacccactgcagcagcccatggcctcagaaatccttagttaaacacgtt Alignment from CESAR aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG ggcaaccctatccatacactttgtagtctttgaacatgtgacttcttcagaTCAATTATTGCAGCTCCATTCCTTAGACTATCATGCATCAAAATAGGGACAGTAGTAAAGgtacccactgcagcagcccatggcctcagaaatccttagttaaacacgtt Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG ggcaaccctatccatacactttgtagtctttgaacatgtgacttcttcagATCAATTATTGCAGCTCCATTCCTTAGACTATCATGCATCAAAATAGGGACAGTAGTAAAGgtacccactgcagcagcccatggcctcagaaatccttagttaaacacgtt Alignment from Spaln_nt2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG ggcaaccctatccatacactttgtagtctttgaacatgtgacttcttcagATCAATTATTGCAGCTCCATTCCTTAGACTATCATGCATCAAAATAGGGACAGTAGTAAAGgtacccactgcagcagcccatggcctcagaaatccttagttaaacacgtt Alignment from Pairagon ATCAATTATTGCAGCTCCATTCCTTAGA-TATCATGACATCAAAATAGGGACAGTAGTAAAG ggcaaccctatccatacactttgtagtctttgaacatgtgacttcttcagATCAATTATTGCAGCTCCATTCCTTAGACTATCATG-CATCAAAATAGGGACAGTAGTAAAGgtacccactgcagcagcccatggcctcagaaatccttagttaaacacgtt Alignment from Exonerate_protein2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG ggcaaccctatccatacactttgtagtctttgaacatgtgacttcttcagATCAATTATTGCAGCTCCATTCCTTAGACTATCATGCATCAAAATAGGGACAGTAGTAAAGgtacccactgcagcagcccatggcctcagaaatccttagttaaacacgtt Alignment from Exonerate_coding2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG ggcaaccctatccatacactttgtagtctttgaacatgtgacttcttcagATCAATTATTGCAGCTCCATTCCTTAGACTATCATGCATCAAAATAGGGACAGTAGTAAAGgtacccactgcagcagcccatggcctcagaaatccttagttaaacacgtt Alignment from GeneWise ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG ggcaaccctatccatacactttgtagtctttgaacatgtgacttcttcagATCAATTATTGCAGCTCCATTCCTTAGACTATCATGCATCAAAATAGGGACAGTAGTAAAGgtacccactgcagcagcccatggcctcagaaatccttagttaaacacgtt #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGC-AAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagtGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCCAAGCGGGAGC-CCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagtGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCCAAGCGGGAGCCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCCAAGCGGGAGCCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCCAAGCGGGAGCCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGG-CAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCCAAGCGGGAGC-CCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCCAAGCGGGAGCCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCCAAGCGGGAGCCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCCAAGCGGGAGCCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTG-GAAGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG cactgtgagggtgaggagaaaccccccactcctgcctttctcatccttagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGAGCTGCAGAAGAAGATGACAGTGGTGTGCGAAGTGTACT-CCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCACCCAGGgtgagttgtgctggcagctaagtggggaatggctttggggaagagctcct Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTG-GAAGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG cactgtgagggtgaggagaaaccccccactcctgcctttctcatccttagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGAGCTGCAGAAGAAGATGACAGTGGTGTGCGAAGTGTAC-TCCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCACCCAGGgtgagttgtgctggcagctaagtggggaatggctttggggaagagctcct Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG cactgtgagggtgaggagaaaccccccactcctgcctttctcatccttagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGAGCTGCAGAAGAAGATGACAGTGGTGTGCGAAGTGTACTCCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCACCCAGGgtgagttgtgctggcagctaagtggggaatggctttggggaagagctcct Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG cactgtgagggtgaggagaaaccccccactcctgcctttctcatccttagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGAGCTGCAGAAGAAGATGACAGTGGTGTGCGAAGTGTACTCCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCACCCAGGgtgagttgtgctggcagctaagtggggaatggctttggggaagagctcct Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTG-GAAGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG cactgtgagggtgaggagaaaccccccactcctgcctttctcatccttagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGAGCTGCAGAAGAAGATGACAGTGGTGTGCGAAGTGTACT-CCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCACCCAGGgtgagttgtgctggcagctaagtggggaatggctttggggaagagctcct Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG cactgtgagggtgaggagaaaccccccactcctgcctttctcatccttagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGAGCTGCAGAAGAAGATGACAGTGGTGTGCGAAGTGTACTCCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCACCCAGGgtgagttgtgctggcagctaagtggggaatggctttggggaagagctcct Alignment from Exonerate_coding2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG cactgtgagggtgaggagaaaccccccactcctgcctttctcatccttagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGAGCTGCAGAAGAAGATGACAGTGGTGTGCGAAGTGTACTCCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCACCCAGGgtgagttgtgctggcagctaagtggggaatggctttggggaagagctcct Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG cactgtgagggtgaggagaaaccccccactcctgcctttctcatccttagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGAGCTGCAGAAGAAGATGACAGTGGTGTGCGAAGTGTACTCCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCACCCAGGgtgagttgtgctggcagctaagtggggaatggctttggggaagagctcct #### Pdcd11_ID10138_32 --> 1 - 0 Original Alignment aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAG-GAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcaggGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGCGAGTCCCTGA-AAAGGTCTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from CESAR aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcaggGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGCGAGTCCCTGAAAAGGTCTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from Spaln_aa2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGCGAGTCCCTGAAAAGGTCTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from Spaln_nt2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGCGAGTCCCTGAAAAGGTCTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from Pairagon AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAG-GAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGCGAGTCCCTGAA-AAGGTCTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from Exonerate_protein2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGCGAGTCCCTGAAAAGGTCTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from Exonerate_coding2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGCGAGTCCCTGAAAAGGTCTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag Alignment from GeneWise AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcatccagtgcagagctgctgaactcaattgtcctttctcctttcagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTATGGCTCTCAGCGAGTCCCTGAAAAGGTCTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtaatatgttaaggtccacacccacatgccctagatgctagacccttgag #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATT-ACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTCACCA-AGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTCACCAAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTCACCAAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTCACCAAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTCACCAAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTCACCAAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTCACCAAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAATTCACCAAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAA-ATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAACATCACCG-TTACATTTTACATGGCAAAGAAGAAATCAACGTGATTccgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAACATCACCGTTACATTTTACATGGCAAAGAAGAAATCAACGTGATTccgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAACATCACCGTTACATTTTACATGGCAAAGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAA-ATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAACATCACCG-TTACATTTTACATGGCAAAGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Pairagon GAAATCATCTTCTATAAA-ATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAACATCACCG-TTACATTTTACATGGCAAAGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAACATCACCGTTACATTTTACATGGCAAAGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAACATCACCGTTACATTTTACATGGCAAAGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAACATCACCGTTACATTTTACATGGCAAAGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGCTACACAGTCC-AAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGCTACACAGTCCAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGCTACACAGTCCAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGCTACACAGTCCAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Pairagon GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGCTACACAGTCC-AAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGCTACACAGTCCAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGCTACACAGTCCAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGCTACACAGTCCAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGATTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc #### Pde6c_ID7550_20 --> 0 - 0 Original Alignment CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTG-GGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctcccaaaactctcaggaaacgccttaaagacatttcctctttctctcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGCGGATTTATTG-TTTTGTTTGTACTTTCGTGTACAAGgtgagtaaataaactatttgaatgaactgtagcttaatttcattgagaag Alignment from CESAR CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctcccaaaactctcaggaaacgccttaaagacatttcctctttctctcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGCGGATTTATTGTTTTGTTTGTACTTTCGTGTACAAGgtgagtaaataaactatttgaatgaactgtagcttaatttcattgagaag Alignment from Spaln_aa2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctcccaaaactctcaggaaacgccttaaagacatttcctctttctctcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGCGGATTTATTGTTTTGTTTGTACTTTCGTGTACAAGgtgagtaaataaactatttgaatgaactgtagcttaatttcattgagaag Alignment from Spaln_nt2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctcccaaaactctcaggaaacgccttaaagacatttcctctttctctcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGCGGATTTATTGTTTTGTTTGTACTTTCGTGTACAAGgtgagtaaataaactatttgaatgaactgtagcttaatttcattgagaag Alignment from Pairagon CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTG-GGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctcccaaaactctcaggaaacgccttaaagacatttcctctttctctcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGCGGATTTATTG-TTTTGTTTGTACTTTCGTGTACAAGgtgagtaaataaactatttgaatgaactgtagcttaatttcattgagaag Alignment from Exonerate_protein2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctcccaaaactctcaggaaacgccttaaagacatttcctctttctctcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGCGGATTTATTGTTTTGTTTGTACTTTCGTGTACAAGgtgagtaaataaactatttgaatgaactgtagcttaatttcattgagaag Alignment from Exonerate_coding2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctcccaaaactctcaggaaacgccttaaagacatttcctctttctctcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGCGGATTTATTGTTTTGTTTGTACTTTCGTGTACAAGgtgagtaaataaactatttgaatgaactgtagcttaatttcattgagaag Alignment from GeneWise CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctcccaaaactctcaggaaacgccttaaagacatttcctctttctctcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGCGGATTTATTGTTTTGTTTGTACTTTCGTGTACAAGgtgagtaaataaactatttgaatgaactgtagcttaatttcattgagaag #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAGTGTGACACCATC-AACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCCAACACCT-GCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from CESAR TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCCAACACCTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCCAACACCTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCCAACACCTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Pairagon TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCCAACACCTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCCAACACCTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Exonerate_coding2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCCAACACCTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from GeneWise TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCCAACACCTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGAT-GGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttaggTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATCGGGGGGCAGC-ACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTggtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttaggTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATCGGGGGGCAGCACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTggtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATCGGGGGGCAGCACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATCGGGGGGCAGCACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Pairagon GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGAT-GGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATCGGGGGGCAGC-ACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATCGGGGGGCAGCACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATCGGGGGGCAGCACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from GeneWise GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATCGGGGGGCAGCACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTC-TGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tagattggtgaaaaagcctctcagttgtgtaattgtttggttttctttagGTGGTCCTGATCGGAGATGGTGTTGGTGGCATCCTTGGCTTTGATGCGCTCCTGCCACA-CGCCAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtaagagtgtccaaactcagcctcctcaggagggcgggtttctccacctc Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tagattggtgaaaaagcctctcagttgtgtaattgtttggttttctttagGTGGTCCTGATCGGAGATGGTGTTGGTGGCATCCTTGGCTTTGATGCGCTCCTGCCACACGCCAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtaagagtgtccaaactcagcctcctcaggagggcgggtttctccacctc Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tagattggtgaaaaagcctctcagttgtgtaattgtttggttttctttagGTGGTCCTGATCGGAGATGGTGTTGGTGGCATCCTTGGCTTTGATGCGCTCCTGCCACACGCCAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtaagagtgtccaaactcagcctcctcaggagggcgggtttctccacctc Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tagattggtgaaaaagcctctcagttgtgtaattgtttggttttctttagGTGGTCCTGATCGGAGATGGTGTTGGTGGCATCCTTGGCTTTGATGCGCTCCTGCCACACGCCAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtaagagtgtccaaactcagcctcctcaggagggcgggtttctccacctc Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCT-CTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tagattggtgaaaaagcctctcagttgtgtaattgtttggttttctttagGTGGTCCTGATCGGAGATGGTGTTGGTGGCATCCTTGGCTTTGATGCGCTCCTGCCACA-CGCCAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtaagagtgtccaaactcagcctcctcaggagggcgggtttctccacctc Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tagattggtgaaaaagcctctcagttgtgtaattgtttggttttctttagGTGGTCCTGATCGGAGATGGTGTTGGTGGCATCCTTGGCTTTGATGCGCTCCTGCCACACGCCAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtaagagtgtccaaactcagcctcctcaggagggcgggtttctccacctc Alignment from Exonerate_coding2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tagattggtgaaaaagcctctcagttgtgtaattgtttggttttctttagGTGGTCCTGATCGGAGATGGTGTTGGTGGCATCCTTGGCTTTGATGCGCTCCTGCCACACGCCAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtaagagtgtccaaactcagcctcctcaggagggcgggtttctccacctc Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tagattggtgaaaaagcctctcagttgtgtaattgtttggttttctttagGTGGTCCTGATCGGAGATGGTGTTGGTGGCATCCTTGGCTTTGATGCGCTCCTGCCACACGCCAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtaagagtgtccaaactcagcctcctcaggagggcgggtttctccacctc #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTG-GCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGCGCCT-CATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGCGCCTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGCGCCTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGCGCCTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGCGCCTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGCGCCTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGCGCCTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGCGCCTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACC-TTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCACCCTTCCCAG-GCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCaggtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from CESAR GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCACCCTTCCCAGGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCaggtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from Spaln_aa2Genome GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCACCCTTCCCAGGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from Spaln_nt2Genome GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCACCCTTCCCAGGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from Pairagon GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCACCCTTCCCAGGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from Exonerate_protein2genome GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCACCCTTCCCAGGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from Exonerate_coding2genome GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCACCCTTCCCAGGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa Alignment from GeneWise GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG aagttggtagacaggagtgttgtctccatgtttcgaattgtattttgtagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACGGAGGTCACTAACAGCTCTGGCCGTCTCACCCTTCCCAGGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAGgtactgaggttagcaggtatctgggctcctgtggggctgggcactgccaa #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTC-TCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gcactgccaacctcaccctgtccacttaccatttctcccgtgtccactaggGGAGACCACACATATGCTGAGTGCTGCCTAACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCCTCTA-CATGGGCAGTGACCCCAAGGTGCGAGCTGGCGCAGTGGATGTGGTGaggtaagttcctcagccccaccaggcacagcaacttgtcatccctgtggact Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gcactgccaacctcaccctgtccacttaccatttctcccgtgtccactaggGGAGACCACACATATGCTGAGTGCTGCCTAACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCCTCTACATGGGCAGTGACCCCAAGGTGCGAGCTGGCGCAGTGGATGTGGTGaggtaagttcctcagccccaccaggcacagcaacttgtcatccctgtggact Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacttaccatttctcccgtgtccactagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCCTCTACATGGGCAGTGACCCCAAGGTGCGAGCTGGCGCAGTGGATGTGGTGAGgtaagttcctcagccccaccaggcacagcaacttgtcatccctgtggact Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacttaccatttctcccgtgtccactagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCCTCTACATGGGCAGTGACCCCAAGGTGCGAGCTGGCGCAGTGGATGTGGTGAGgtaagttcctcagccccaccaggcacagcaacttgtcatccctgtggact Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacttaccatttctcccgtgtccactagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCCTCTACATGGGCAGTGACCCCAAGGTGCGAGCTGGCGCAGTGGATGTGGTGAGgtaagttcctcagccccaccaggcacagcaacttgtcatccctgtggact Alignment from Exonerate_protein2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacttaccatttctcccgtgtccactagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCCTCTACATGGGCAGTGACCCCAAGGTGCGAGCTGGCGCAGTGGATGTGGTGAGgtaagttcctcagccccaccaggcacagcaacttgtcatccctgtggact Alignment from Exonerate_coding2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacttaccatttctcccgtgtccactagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCCTCTACATGGGCAGTGACCCCAAGGTGCGAGCTGGCGCAGTGGATGTGGTGAGgtaagttcctcagccccaccaggcacagcaacttgtcatccctgtggact Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacttaccatttctcccgtgtccactagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCCTCTACATGGGCAGTGACCCCAAGGTGCGAGCTGGCGCAGTGGATGTGGTGAGgtaagttcctcagccccaccaggcacagcaacttgtcatccctgtggact #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATTGTG-TATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacaggCACTGGCAGGACTCTGGCTACTTGATTGTGCTATGTAACTG-CCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacaggCACTGGCAGGACTCTGGCTACTTGATTGTGCTATGTAACTGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGCTATGTAACTGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGCTATGTAACTGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATTGTG-TATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGCTATGTAACT-GCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from Exonerate_protein2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGCTATGTAACTGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from Exonerate_coding2genome GCACTGGCAGGACTCTGGCTACTTGATTGTG-TATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGCTATGTAACT-GCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from GeneWise GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAGGTAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGCTATGTAACTGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAGGCAAgttggcttaggatggtcctaacctgccctcaccacattccacacca #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCA-CTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACCTGGGGC-CTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGTGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from CESAR GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACCTGGGGCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGTGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACCTGGGGCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGTGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACCTGGGGCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGTGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACCTGGGGCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGTGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from Exonerate_protein2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACCTGGGGCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGTGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from Exonerate_coding2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACCTGGGGCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGTGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG catccttggttatatggctctataggctcctggcggctcttccttggcagGTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTACGCAGCACCTGGGGCCTCTCCGAGCCAGACCTACATTATTGGCCGTGGTGTGCGCAAATTGCAGGCACAGTGTCAGgtaatgcctaaggaagggcaggtaacagaattccagggtcaaggctaaga #### Pkd2l1_ID8955_13 --> 0 - 2 Original Alignment GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTG-GGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tgactgcccagactcagcatcttttcatgacttgttctaaacttttctagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCTCCAGGTGAACTGCGGTGTGG-GGCTGCGAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACatgtaaaaggaggccagggcaagggatggctggctgtggcatcttttgagac Alignment from CESAR GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tgactgcccagactcagcatcttttcatgacttgttctaaacttttctagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCTCCAGGTGAACTGCGGTGTGGGGCTGCGAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACatgtaaaaggaggccagggcaagggatggctggctgtggcatcttttgagac Alignment from Spaln_aa2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactgcccagactcagcatcttttcatgacttgttctaaacttttctagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCTCCAGGTGAACTGCGGTGTGGGGCTGCGAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACATgtaaaaggaggccagggcaagggatggctggctgtggcatcttttgagac Alignment from Spaln_nt2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactgcccagactcagcatcttttcatgacttgttctaaacttttctagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCTCCAGGTGAACTGCGGTGTGGGGCTGCGAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACATgtaaaaggaggccagggcaagggatggctggctgtggcatcttttgagac Alignment from Pairagon GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactgcccagactcagcatcttttcatgacttgttctaaacttttctagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCTCCAGGTGAACTGCGGTGTGGGGCTGCGAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACATgtaaaaggaggccagggcaagggatggctggctgtggcatcttttgagac Alignment from Exonerate_protein2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactgcccagactcagcatcttttcatgacttgttctaaacttttctagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCTCCAGGTGAACTGCGGTGTGGGGCTGCGAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACATgtaaaaggaggccagggcaagggatggctggctgtggcatcttttgagac Alignment from Exonerate_coding2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactgcccagactcagcatcttttcatgacttgttctaaacttttctagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCTCCAGGTGAACTGCGGTGTGGGGCTGCGAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACATgtaaaaggaggccagggcaagggatggctggctgtggcatcttttgagac Alignment from GeneWise GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactgcccagactcagcatcttttcatgacttgttctaaacttttctagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCTCCAGGTGAACTGCGGTGTGGGGCTGCGAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACATgtaaaaggaggccagggcaagggatggctggctgtggcatcttttgagac #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG caccccaagccttgccctgccctcagcttgtgtctctgatccttttgcagCTGGAGGAGGCCCAGAAACAGCGGCATCGAACGCCTGG-GGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtaaagcctggaggaggcacacagacaagtagcaggggagctgggcaacc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG caccccaagccttgccctgccctcagcttgtgtctctgatccttttgcagCTGGAGGAGGCCCAGAAACAGCGGCATCGAACGCCTGGGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtaaagcctggaggaggcacacagacaagtagcaggggagctgggcaacc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG caccccaagccttgccctgccctcagcttgtgtctctgatccttttgcagCTGGAGGAGGCCCAGAAACAGCGGCATCGAACGCCTGGGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtaaagcctggaggaggcacacagacaagtagcaggggagctgggcaacc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG caccccaagccttgccctgccctcagcttgtgtctctgatccttttgcagCTGGAGGAGGCCCAGAAACAGCGGCATCGAACGCCTGGGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtaaagcctggaggaggcacacagacaagtagcaggggagctgggcaacc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG caccccaagccttgccctgccctcagcttgtgtctctgatccttttgcagCTGGAGGAGGCCCAGAAACAGCGGCATCGAACGCCTGG-GGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtaaagcctggaggaggcacacagacaagtagcaggggagctgggcaacc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG caccccaagccttgccctgccctcagcttgtgtctctgatccttttgcagCTGGAGGAGGCCCAGAAACAGCGGCATCGAACGCCTGGGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtaaagcctggaggaggcacacagacaagtagcaggggagctgggcaacc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG caccccaagccttgccctgccctcagcttgtgtctctgatccttttgcagCTGGAGGAGGCCCAGAAACAGCGGCATCGAACGCCTGGGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtaaagcctggaggaggcacacagacaagtagcaggggagctgggcaacc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG caccccaagccttgccctgccctcagcttgtgtctctgatccttttgcagCTGGAGGAGGCCCAGAAACAGCGGCATCGAACGCCTGGGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtaaagcctggaggaggcacacagacaagtagcaggggagctgggcaacc #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAG-GCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAACGCCAAAC-GTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAACGCCAAACGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAACGCCAAACGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAACGCCAAACGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAG-GCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAACGCCAAAC-GTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAACGCCAAACGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAACGCCAAACGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from GeneWise -GGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAACGCCAAACGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGC-CGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagagGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCCGCCTTC-GGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagagGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCCGCCTTCGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCCGCCTTCGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCCGCCTTCGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCCGCCTTCGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCCGCCTTCGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Exonerate_coding2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCCGCCTTCGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from GeneWise GGCAGCGAGATGATTTGATTGCCAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagCTACAGCTAACCTGGCATGGGTCTCCCCTCACTCAGAGGTGACCCCTACACCTCTAGAAGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCCGCCTTCGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAG-CTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAggtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAggtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAG-CTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCC-AACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg ctggaagaggatgcttcttcttctttgactacccacccctttctccgcaggTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACAGGTGGACTCCTCTCAACTACA-GCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGggtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg ctggaagaggatgcttcttcttctttgactacccacccctttctccgcaggTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACAGGTGGACTCCTCTCAACTACAGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGggtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACAGGTGGACTCCTCTCAACTACAGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACAGGTGGACTCCTCTCAACTACAGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTC-CAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACAGGTGGACTCCTCTCAACTACA-GCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACAGGTGGACTCCTCTCAACTACAGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACAGGTGGACTCCTCTCAACTACAGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACAGGTGGACTCCTCTCAACTACAGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg #### Plcb3_ID1918_13 --> 0 - 1 Original Alignment CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGC-TCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTATG---GGTATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCCTCCGCTG-CACAGAGCCCTCGTCACCTCAGCTTggtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from CESAR CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCCTCCGCTGCACAGAGCCCTCGTCACCTCAGCTTggtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from Spaln_aa2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCCTCCGCTGCACAGAGCCCTCGTCACCTCAGCTTGgtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from Spaln_nt2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTATGG---GTATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCCTCCGCTGCACAGAGCCCTCGTCACCTCAGCTTGgtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from Pairagon CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTATGG---GTATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCCTCCGCTGCACAGAGCCCTCGTCACCTCAGCTTGgtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from Exonerate_protein2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCCTCCGCTGCACAGAGCCCTCGTCACCTCAGCTTGgtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from Exonerate_coding2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCCTCCGCTGCACAGAGCCCTCGTCACCTCAGCTTGgtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from GeneWise CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTGGGTCC- aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCCTCCGCTGCACAGAGCCCTCGTCACCTCAGCTTGGTATGAgtcctgtcctgacttccacccctgatcctaatgcagacatattt #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAGTAC-TGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcggagctctgtcttcctcctttctgtctacagaGCAAAGCAGCAAGCCAAGATGGCTGAATACCTGCCGCT-TATCTTTGGGGATGCACTACTCATTGACCCTCTTGACAAATACCCAgttggtggacacttggagttgagccagggcgtatgaaggtgaagggagct Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcggagctctgtcttcctcctttctgtctacagaGCAAAGCAGCAAGCCAAGATGGCTGAATACCTGCCGCTTATCTTTGGGGATGCACTACTCATTGACCCTCTTGACAAATACCCAgttggtggacacttggagttgagccagggcgtatgaaggtgaagggagct Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcggagctctgtcttcctcctttctgtctacagAGCAAAGCAGCAAGCCAAGATGGCTGAATACCTGCCGCTTATCTTTGGGGATGCACTACTCATTGACCCTCTTGACAAATACCCAgttggtggacacttggagttgagccagggcgtatgaaggtgaagggagct Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcggagctctgtcttcctcctttctgtctacagAGCAAAGCAGCAAGCCAAGATGGCTGAATACCTGCCGCTTATCTTTGGGGATGCACTACTCATTGACCCTCTTGACAAATACCCAgttggtggacacttggagttgagccagggcgtatgaaggtgaagggagct Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAGTA-CTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCC--------------------------------------------------- ataggcctctgacccctgcggagctctgtcttcctcctttctgtctacagAGCAAAGCAGCAAGCCAAGATGGCTGAATACCTGCCGCT-TATCTTTGGGGATGCACTACTCATTGACCCTCTTGACAAATACCCAGTTGGTGGACACTTGGAGTTGAGCCAGGGCGTATGAAGGTGAAGGGAGCT Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcggagctctgtcttcctcctttctgtctacagAGCAAAGCAGCAAGCCAAGATGGCTGAATACCTGCCGCTTATCTTTGGGGATGCACTACTCATTGACCCTCTTGACAAATACCCAgttggtggacacttggagttgagccagggcgtatgaaggtgaagggagct Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcggagctctgtcttcctcctttctgtctacagAGCAAAGCAGCAAGCCAAGATGGCTGAATACCTGCCGCTTATCTTTGGGGATGCACTACTCATTGACCCTCTTGACAAATACCCAgttggtggacacttggagttgagccagggcgtatgaaggtgaagggagct Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcggagctctgtcttcctcctttctgtctacagAGCAAAGCAGCAAGCCAAGATGGCTGAATACCTGCCGCTTATCTTTGGGGATGCACTACTCATTGACCCTCTTGACAAATACCCAgttggtggacacttggagttgagccagggcgtatgaaggtgaagggagct #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAG-CCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg gaccactaggggagcattatgtgagagcatttatcattctctactttcagaGGTGCAAAGGGCAAGCCCATACC-CACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTACTCATTGAGAAGTATGAGACGAACAAACAGTTCCTGGAGCGCggtaaggagctataggcagcatggcggtgtgggtggggcccaccaagccca Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg gaccactaggggagcattatgtgagagcatttatcattctctactttcagaGGTGCAAAGGGCAAGCCCATACCCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTACTCATTGAGAAGTATGAGACGAACAAACAGTTCCTGGAGCGCggtaaggagctataggcagcatggcggtgtgggtggggcccaccaagccca Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG gaccactaggggagcattatgtgagagcatttatcattctctactttcagAGGTGCAAAGGGCAAGCCCATACCCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTACTCATTGAGAAGTATGAGACGAACAAACAGTTCCTGGAGCGCGgtaaggagctataggcagcatggcggtgtgggtggggcccaccaagccca Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG gaccactaggggagcattatgtgagagcatttatcattctctactttcagAGGTGCAAAGGGCAAGCCCATACCCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTACTCATTGAGAAGTATGAGACGAACAAACAGTTCCTGGAGCGCGgtaaggagctataggcagcatggcggtgtgggtggggcccaccaagccca Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG gaccactaggggagcattatgtgagagcatttatcattctctactttcagAGGTGCAAAGGGCAAGCCCATACCCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTACTCATTGAGAAGTATGAGACGAACAAACAGTTCCTGGAGCGCGgtaaggagctataggcagcatggcggtgtgggtggggcccaccaagccca Alignment from Exonerate_protein2genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG gaccactaggggagcattatgtgagagcatttatcattctctactttcagAGGTGCAAAGGGCAAGCCCATACCCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTACTCATTGAGAAGTATGAGACGAACAAACAGTTCCTGGAGCGCGgtaaggagctataggcagcatggcggtgtgggtggggcccaccaagccca Alignment from Exonerate_coding2genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG gaccactaggggagcattatgtgagagcatttatcattctctactttcagAGGTGCAAAGGGCAAGCCCATACCCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTACTCATTGAGAAGTATGAGACGAACAAACAGTTCCTGGAGCGCGgtaaggagctataggcagcatggcggtgtgggtggggcccaccaagccca Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG gaccactaggggagcattatgtgagagcatttatcattctctactttcagAGGTGCAAAGGGCAAGCCCATACCCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTACTCATTGAGAAGTATGAGACGAACAAACAGTTCCTGGAGCGCGgtaaggagctataggcagcatggcggtgtgggtggggcccaccaagccca #### Plcb3_ID1923_8 --> 1 - 2 Original Alignment tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGC-CCGGATATTGACAAGATCCTGCTGGAGat tctggaactggctgaccaaggttctcacagccacccctttctacccacagtGAGTCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCCAGATA-TGACAAGATCCTGCTGGAGatgtgagtaacttgggaatggagtccataggctgggctctgtctccagtgta Alignment from CESAR tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tctggaactggctgaccaaggttctcacagccacccctttctacccacagtGAGTCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCCAGATATGACAAGATCCTGCTGGAGatgtgagtaacttgggaatggagtccataggctgggctctgtctccagtgta Alignment from Spaln_aa2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tctggaactggctgaccaaggttctcacagccacccctttctacccacagTGAGTCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCCAGATATGACAAGATCCTGCTGGAGATgtgagtaacttgggaatggagtccataggctgggctctgtctccagtgta Alignment from Spaln_nt2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tctggaactggctgaccaaggttctcacagccacccctttctacccacagTGAGTCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCCAGATATGACAAGATCCTGCTGGAGATgtgagtaacttgggaatggagtccataggctgggctctgtctccagtgta Alignment from Pairagon TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCG-CCCGGATATTGACAAGATCCTGCTGGAGAT tctggaactggctgaccaaggttctcacagccacccctttctacccacagTGAGTCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCCAGATA-TGACAAGATCCTGCTGGAGATgtgagtaacttgggaatggagtccataggctgggctctgtctccagtgta Alignment from Exonerate_protein2genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tctggaactggctgaccaaggttctcacagccacccctttctacccacagTGAGTCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCCAGATATGACAAGATCCTGCTGGAGATgtgagtaacttgggaatggagtccataggctgggctctgtctccagtgta Alignment from Exonerate_coding2genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tctggaactggctgaccaaggttctcacagccacccctttctacccacagTGAGTCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCCAGATATGACAAGATCCTGCTGGAGATgtgagtaacttgggaatggagtccataggctgggctctgtctccagtgta Alignment from GeneWise TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tctggaactggctgaccaaggttctcacagccacccctttctacccacagTGAGTCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCCAGATATGACAAGATCCTGCTGGAGATgtgagtaacttgggaatggagtccataggctgggctctgtctccagtgta #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCG-GACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgccgcccgtccccccattgaccctattaatttttcttccctctagcATTCTGAAGATGTTCTCGGCGCGACAAGAAGC-GGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgtgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from CESAR cATTCTGAAGATGTTCTCGGCG-GACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgccgcccgtccccccattgaccctattaatttttcttccctctagcATTCTGAAGATGTTCTCGGCGCGACAAGAAGC-GGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgtgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Pairagon CATTCTGAAGATGTTCTCGGCG-GACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGC-GGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Exonerate_coding2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGCGACAAGAAGCGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCT-GACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTCGACACCC-GCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTCGACACCCGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTCGACACCCGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTCGACACCCGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCT-GACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTCGACACCC-GCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from Exonerate_protein2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTCGACACCCGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from Exonerate_coding2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTCGACACCCGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTCGACACCCGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTC-CCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagggAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCCTTGGA-CCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagggAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCCTTGGACCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCCTTGGACCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCCTTGGACCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCCTTGGACCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCCTTGGACCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCCTTGGACCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCCTTGGACCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc #### Pold4_ID437_2 --> 2 - 1 Original Alignment ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTG-GAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gtagggcaaaggtctggatgagcctgagcctcttaaccttcccaacccagggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGCGAGCTGCTGA-GCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAggtcagtaccccatttcctccctccaatcagtcactttcataaggtactta Alignment from CESAR ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gtagggcaaaggtctggatgagcctgagcctcttaaccttcccaacccagggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGCGAGCTGCTGAGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAggtcagtaccccatttcctccctccaatcagtcactttcataaggtactta Alignment from Spaln_aa2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagggcaaaggtctggatgagcctgagcctcttaaccttcccaacccagGGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGCGAGCTGCTGAGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAGgtcagtaccccatttcctccctccaatcagtcactttcataaggtactta Alignment from Spaln_nt2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagggcaaaggtctggatgagcctgagcctcttaaccttcccaacccagGGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGCGAGCTGCTGAGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAGgtcagtaccccatttcctccctccaatcagtcactttcataaggtactta Alignment from Pairagon GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTG-GAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagggcaaaggtctggatgagcctgagcctcttaaccttcccaacccagGGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGCGAGCTGCTGA-GCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAGgtcagtaccccatttcctccctccaatcagtcactttcataaggtactta Alignment from Exonerate_protein2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagggcaaaggtctggatgagcctgagcctcttaaccttcccaacccagGGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGCGAGCTGCTGAGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAGgtcagtaccccatttcctccctccaatcagtcactttcataaggtactta Alignment from Exonerate_coding2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagggcaaaggtctggatgagcctgagcctcttaaccttcccaacccagGGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGCGAGCTGCTGAGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAGgtcagtaccccatttcctccctccaatcagtcactttcataaggtactta Alignment from GeneWise GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagggcaaaggtctggatgagcctgagcctcttaaccttcccaacccagGGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGCGAGCTGCTGAGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAGgtcagtaccccatttcctccctccaatcagtcactttcataaggtactta #### Poll_ID9484_3 --> 1 - 0 Original Alignment gTCCTTGGATGAACCACAGCCCAGCAAG-TCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttaggTCCTTGGATGAACCACAGCCCAGCAAGCTCAG-CCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from CESAR gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttaggTCCTTGGATGAACCACAGCCCAGCAAGCTCAGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Spaln_aa2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGCTCAGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Spaln_nt2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGCTCAGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Pairagon GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGCTCAGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Exonerate_protein2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGCTCAGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Exonerate_coding2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGCTCAGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from GeneWise GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGCTCAGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg #### Polr2g_ID2376_7 --> 0 - 1 Original Alignment TTTGCCATTGGCTCT-CTGATGGACGACTACTTGg cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCCTGA-GGACGACTACCTGggtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from CESAR TTTGCCATTGGCTCTCTGATGGACGACTACTTGg cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCCTGAGGACGACTACCTGggtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from Spaln_aa2Genome TTTGCCATTGGCTCTCTGATGGACGACTACTTGG cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCCTGAGGACGACTACCTGGgtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from Spaln_nt2Genome TTTGCCATTGGCTCTCTGATGGACGACTACTTGG cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCCTGAGGACGACTACCTGGgtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from Pairagon TTTGCCATTGGCTCTCTGATGGACGACTACTTGG cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCCTGAGGACGACTACCTGGgtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from Exonerate_protein2genome cttgggattggggcatgctgcctcatcttgacactgacttctttacacagtttgctattggctctcctgaggacgactacctgggtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from Exonerate_coding2genome cttgggattggggcatgctgcctcatcttgacactgacttctttacacagtttgctattggctctcctgaggacgactacctgggtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from GeneWise cttgggattggggcatgctgcctcatcttgacactgacttctttacacagtttgctattggctctcctgaggacgactacctgggtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGT-GGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagggGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTCGGGAACC-TGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagggGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTCGGGAACCTGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTCGGGAACCTGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTCGGGAACCTGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTCGGGAACCTGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTCGGGAACCTGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTCGGGAACCTGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTTCCTACTTCGTCGGGAACCTGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTTGAC-TGTTACAAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACCTGTT-CAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from CESAR GAGCTGTTAGTTGACTGTTACAAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACCTGTTCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACCTGTTCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from Spaln_nt2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACCTGTTCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from Pairagon GAGCTGTTAGTTGACTGTTACAAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACCTGTTCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from Exonerate_protein2genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACCTGTTCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from Exonerate_coding2genome agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcaggagctattagttgacctgttcaaacccactgaggtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from GeneWise GAGCTGTTAGTTGACTGTTACAAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACCTGTTCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCA-GCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCACGCCCCAC-GTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCACGCCCCACGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCACGCCCCACGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCACGCCCCACGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Pairagon GTGCCTACTCCA-GCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCACGCCCCAC-GTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCACGCCCCACGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCACGCCCCACGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCACGCCCCACGTCTGCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTG-TCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttttgtgaaggggtgataccccacctttctcctgtgcctacagGGAAGTGATTTCCTCCCTGTGCTGCTCCA-AGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGAgtgagtggcagggggagaaggaaaagagacagagatagatcaagggtgtt Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttttgtgaaggggtgataccccacctttctcctgtgcctacagGGAAGTGATTTCCTCCCTGTGCTGCTCCAAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGAgtgagtggcagggggagaaggaaaagagacagagatagatcaagggtgtt Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttttgtgaaggggtgataccccacctttctcctgtgcctacagGGAAGTGATTTCCTCCCTGTGCTGCTCCAAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGAgtgagtggcagggggagaaggaaaagagacagagatagatcaagggtgtt Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttttgtgaaggggtgataccccacctttctcctgtgcctacagGGAAGTGATTTCCTCCCTGTGCTGCTCCAAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGAgtgagtggcagggggagaaggaaaagagacagagatagatcaagggtgtt Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttttgtgaaggggtgataccccacctttctcctgtgcctacagGGAAGTGATTTCCTCCCTGTGCTGCTCCAAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGAgtgagtggcagggggagaaggaaaagagacagagatagatcaagggtgtt Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttttgtgaaggggtgataccccacctttctcctgtgcctacagGGAAGTGATTTCCTCCCTGTGCTGCTCCAAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGAgtgagtggcagggggagaaggaaaagagacagagatagatcaagggtgtt Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttttgtgaaggggtgataccccacctttctcctgtgcctacagGGAAGTGATTTCCTCCCTGTGCTGCTCCAAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGAgtgagtggcagggggagaaggaaaagagacagagatagatcaagggtgtt Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttttgtgaaggggtgataccccacctttctcctgtgcctacagGGAAGTGATTTCCTCCCTGTGCTGCTCCAAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGAgtgagtggcagggggagaaggaaaagagacagagatagatcaagggtgtt #### Ppp1r32_ID2844_7 --> 0 - 0 Original Alignment GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTC-CCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCCTC-AACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from CESAR GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCCTCAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from Spaln_aa2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCCTCAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from Spaln_nt2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCCTCAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from Pairagon GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCCTCAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from Exonerate_protein2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCCTCAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from Exonerate_coding2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCCTCAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from GeneWise GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCCTCAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata #### Ppp1r32_ID2849_2 --> 2 - 2 Original Alignment gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGG-CCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gccactcgtcacttttctggtgggctttacatcattttatatctttaaaggtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCTCTGG-CTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAgggtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from CESAR gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gccactcgtcacttttctggtgggctttacatcattttatatctttaaaggtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCTCTGGCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAgggtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from Spaln_aa2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCTCTGGCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from Spaln_nt2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCTCTGGCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from Pairagon GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCTCTGGCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from Exonerate_protein2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCTCTGGCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from Exonerate_coding2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCTCTGGCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc Alignment from GeneWise GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcgtcacttttctggtgggctttacatcattttatatctttaaagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCTCTGGCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtgagtttcctatactctgttggatcttaaatattaaagatgtcattccc #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGAT-GATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGG-GTCTCTCTTTGGGAATCGTTGGCTGAAAaggtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGGTCTCTCTTTGGGAATCGTTGGCTGAAAaggtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from Pairagon GCGACAGACTTATTATTGGAT-GATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGG-GTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from Exonerate_coding2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from GeneWise GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTG-GCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGCGCTG-CCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from CESAR GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGCGCTGCCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGCGCTGCCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGCGCTGCCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Pairagon GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGCGCTGCCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGCGCTGCCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGCGCTGCCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from GeneWise GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGCGCTGCCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCTCCCTCC-GCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagttGCTCACCCAATCCGACCCAAGCCTCCCTCCCGCCACCA-CATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagttGCTCACCCAATCCGACCCAAGCCTCCCTCCCGCCACCACATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCCGCCACCACATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCCGCCACCACATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCT-CCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCCGCCACCA-CATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCCGCCACCACATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCCGCCACCACATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCCGCCACCACATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATT-GTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG ttttgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagctCTGGCCACTCTGAAACCACAGGCTGGCCTTATTCGTACCTC-GGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from CESAR ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG acgtgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagctCTGGCCACTCTGAAACCACAGGCTGGCCTTATTCGTACCTCGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG ttttgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTATTCGTACCTCGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG ttttgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTATTCGTACCTCGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Pairagon CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATT-GTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG ttttgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTATTCGTACCTC-GGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG ttttgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTATTCGTACCTCGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG ttttgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTATTCGTACCTCGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from GeneWise CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG ttttgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTATTCGTACCTCGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATT-GGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from Pairagon GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGAT-TGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACT-GTGCTAACCACGGAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTCGTGCTAA-CACGGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTCGTGCTAACACGGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTCGTGCTAACACGGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTCGTGCTAACACGGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from Pairagon CTTCAAGACAAGGCTACT-GTGCTAACCACGGAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTCGTGCTAA-CACGGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTCGTGCTAACACGGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from Exonerate_coding2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTCGTGCTAACACGGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from GeneWise CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTCGTGCTAACACGGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt #### Prpf19_ID3049_8 --> 0 - 0 Original Alignment AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTC-AGCAAGTACCGGCAGGTGGCATCCCATGTG cgctttcattgctgctctttggggtttttgctgtttttaatttaatgcagAGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCCAGCAAGT-CCGGCAGGTGGCATCCCATGTGgtgagtggctggaggggtcctactgttcccaggacaagatggacggagga Alignment from CESAR AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG cgctttcattgctgctctttggggtttttgctgtttttaatttaatgcagAGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCCAGCAAGTCCGGCAGGTGGCATCCCATGTGgtgagtggctggaggggtcctactgttcccaggacaagatggacggagga Alignment from Spaln_aa2Genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG cgctttcattgctgctctttggggtttttgctgtttttaatttaatgcagAGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCCAGCAAGTCCGGCAGGTGGCATCCCATGTGgtgagtggctggaggggtcctactgttcccaggacaagatggacggagga Alignment from Spaln_nt2Genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG cgctttcattgctgctctttggggtttttgctgtttttaatttaatgcagAGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCCAGCAAGTCCGGCAGGTGGCATCCCATGTGgtgagtggctggaggggtcctactgttcccaggacaagatggacggagga Alignment from Pairagon AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCT-CAGCAAGTACCGGCAGGTGGCATCCCATGTG cgctttcattgctgctctttggggtttttgctgtttttaatttaatgcagAGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCCAGCAAGT-CCGGCAGGTGGCATCCCATGTGgtgagtggctggaggggtcctactgttcccaggacaagatggacggagga Alignment from Exonerate_protein2genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG cgctttcattgctgctctttggggtttttgctgtttttaatttaatgcagAGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCCAGCAAGTCCGGCAGGTGGCATCCCATGTGgtgagtggctggaggggtcctactgttcccaggacaagatggacggagga Alignment from Exonerate_coding2genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG cgctttcattgctgctctttggggtttttgctgtttttaatttaatgcagAGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCCAGCAAGTCCGGCAGGTGGCATCCCATGTGgtgagtggctggaggggtcctactgttcccaggacaagatggacggagga Alignment from GeneWise AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG cgctttcattgctgctctttggggtttttgctgtttttaatttaatgcagAGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCCAGCAAGTCCGGCAGGTGGCATCCCATGTGgtgagtggctggaggggtcctactgttcccaggacaagatggacggagga #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTG-GCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagtcAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTGCGCCGAGAACA-CTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTG-GCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagtcAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTGCGCCGAGAAC-ACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTGCGCCGAGAACACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTGCGCCGAGAACACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTG-GCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTGCGCCGAGAACA-CTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTGCGCCGAGAACACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTGCGCCGAGAACACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cttgttccatgcccagccctagcctcataaattcattgtgtctcttgtagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTGCGCCGAGAACACTCGCGTGTTTTGTACCCCAATGATAATgtatattgcccttcagactggagactagaagcctaaatccctggggaggg #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCT-GCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTCGCCACCCTCC-AGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTCGCCACCCTCCAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTCGCCACCCTCCAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTCGCCACCCTCCAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCT-GCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTCGCCACCCTCCA-GACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTCGCCACCCTCCAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTCGCCACCCTCCAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTCGCCACCCTCCAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg #### Pygm_ID1685_9 --> 0 - 0 Original Alignment GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC-ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtccccttggtctggaagtcatcaacccttttctgcttctcacagGTGGTCATCCAGCTCAATGACACACACCCCTCTTTGGCCCATCCCGGAGC-GATGAGGATTCTGGTGGACCTGGAACGACTAGACTGGGACAAGgtacagattggccacgtcacccctgtaggacccaatctgtcacagggtgt Alignment from CESAR GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtccccttggtctggaagtcatcaacccttttctgcttctcacagGTGGTCATCCAGCTCAATGACACACACCCCTCTTTGGCCCATCCCGGAGCGATGAGGATTCTGGTGGACCTGGAACGACTAGACTGGGACAAGgtacagattggccacgtcacccctgtaggacccaatctgtcacagggtgt Alignment from Spaln_aa2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtccccttggtctggaagtcatcaacccttttctgcttctcacagGTGGTCATCCAGCTCAATGACACACACCCCTCTTTGGCCCATCCCGGAGCGATGAGGATTCTGGTGGACCTGGAACGACTAGACTGGGACAAGgtacagattggccacgtcacccctgtaggacccaatctgtcacagggtgt Alignment from Spaln_nt2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtccccttggtctggaagtcatcaacccttttctgcttctcacagGTGGTCATCCAGCTCAATGACACACACCCCTCTTTGGCCCATCCCGGAGCGATGAGGATTCTGGTGGACCTGGAACGACTAGACTGGGACAAGgtacagattggccacgtcacccctgtaggacccaatctgtcacagggtgt Alignment from Pairagon GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGG-CCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtccccttggtctggaagtcatcaacccttttctgcttctcacagGTGGTCATCCAGCTCAATGACACACACCCCTCTTTGGCCCATCCCGGAGC-GATGAGGATTCTGGTGGACCTGGAACGACTAGACTGGGACAAGgtacagattggccacgtcacccctgtaggacccaatctgtcacagggtgt Alignment from Exonerate_protein2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtccccttggtctggaagtcatcaacccttttctgcttctcacagGTGGTCATCCAGCTCAATGACACACACCCCTCTTTGGCCCATCCCGGAGCGATGAGGATTCTGGTGGACCTGGAACGACTAGACTGGGACAAGgtacagattggccacgtcacccctgtaggacccaatctgtcacagggtgt Alignment from Exonerate_coding2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtccccttggtctggaagtcatcaacccttttctgcttctcacagGTGGTCATCCAGCTCAATGACACACACCCCTCTTTGGCCCATCCCGGAGCGATGAGGATTCTGGTGGACCTGGAACGACTAGACTGGGACAAGgtacagattggccacgtcacccctgtaggacccaatctgtcacagggtgt Alignment from GeneWise GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtccccttggtctggaagtcatcaacccttttctgcttctcacagGTGGTCATCCAGCTCAATGACACACACCCCTCTTTGGCCCATCCCGGAGCGATGAGGATTCTGGTGGACCTGGAACGACTAGACTGGGACAAGgtacagattggccacgtcacccctgtaggacccaatctgtcacagggtgt #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTAT-GAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcaggTTTAAAGTCTTTGCAGATCATCGAGGAATACA-TAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from CESAR gTTTAAAGTCTTTGCAGATTAT-GAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcaggTTTAAAGTCTTTGCAGATCATCGAGGAATACA-TAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATCGAGGAATACATAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATCGAGGAATACATAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from Pairagon GTTTAAAGTCTTTGCAGATTAT-GAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATCGAGGAATACA-TAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATCGAGGAATACATAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from Exonerate_coding2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATCGAGGAATACATAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from GeneWise -TTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATCGAGGAATACATAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga #### Rab3il1_ID2647_3 --> 0 - 0 Original Alignment GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGT-GCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTCGCACAGC-GGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from CESAR GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTCGCACAGCGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from Spaln_aa2Genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTCGCACAGCGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from Spaln_nt2Genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTCGCACAGCGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from Pairagon GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGT-GCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTCGCACAGC-GGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from Exonerate_protein2genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTCGCACAGCGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from Exonerate_coding2genome GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTCGCACAGCGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt Alignment from GeneWise GAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTGCACAGCTGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAG aggaacagagtatggtcagggtaggctagatttttacctttttcttgtagGAGCTGAAGCTAAAGGATGAAGAGTGTGAACGGCTTTGCAAAGTACGTCGCACAGCGGAGCAGGAGCTTGAGGAGCTGACAGCCAGCCTGTTTGAGgtttggctgggcagcctaggaatgggtggcccatttgtccgggctctagt #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATG-GTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGCGTTCGGG-AGCAAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGCGTTCGGGAGCAAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGCGTTCGGGAGCAAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGCGTTCGGGAGCAAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGCGTTCGGGAGCAAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGCGTTCGGGAGCAAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGCGTTCGGGAGCAAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGCGTTCGGGAGCAAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc #### Rasgrp2_ID1706_5 --> 1 - 0 Original Alignment cCCTACCTACAAATGGAAGCGG-CAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagcCCTACTTACAAATGGAAGCGGCCAGGTGA-CCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from CESAR cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagcCCTACTTACAAATGGAAGCGGCCAGGTGACCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Spaln_aa2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCCAGGTGACCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Spaln_nt2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCCAGGTGACCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Pairagon CCCTACCTACAAATGGAAGCGG-CAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCCAGGTGA-CCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Exonerate_protein2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCCAGGTGACCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Exonerate_coding2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCCAGGTGACCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from GeneWise CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCCAGGTGACCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCC-ACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCCACAGCCA-GCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCCACAGCCAGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCCACAGCCAGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCCACAGCCAGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAG-CCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCCACAGCCA-GCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCCACAGCCAGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCCACAGCCAGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG aatgatgggagaggccaacaggatgctctctgtgtatttgtttctttcagTTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACTGTAGACAACCCGGTCCTGGAGCGATTCATCTCTCTCTTCAACAGTGTCCCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCCACAGCCAGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAGgtgagtacctttccggtgtgcccagactctatgtgcccattaagccttgc #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTG-TTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGCTTGGAAG-GTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from CESAR CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGCTTGGAAGGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGCTTGGAAGGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGCTTGGAAGGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Pairagon CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGCTTGGAAGGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGCTTGGAAGGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGCTTGGAAGGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGCTTGGAAGGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTC-TTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagcgTTCCAGTTCTCCTACACCGCTGTCCTTCGGTG-TTATACAGCTTTCCTCTTCATTCGCACAggtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagcgTTCCAGTTCTCCTACACCGCTGTCCTTCGGTGTTATACAGCTTTCCTCTTCATTCGCACAggtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCCTTCGGTGTTATACAGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCCTTCGGTGTTATACAGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGT-CTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCCTTCGGTG-TTATACAGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCCTTCGGTGTTATACAGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCCTTCGGTGTTATACAGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCCTTCGGTGTTATACAGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTA-CGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg atgtttctagtaactgggcactcactgccttttttttttttccccttcagccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACCGAAACCAAG-TATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTggtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg atgtttctagtaactgggcactcactgccttttttttttttccccttcagccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACCGAAACCAAGTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTggtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACCGAAACCAAGTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACCGAAACCAAGTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTA-CGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACCGAAACCAAG-TATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACCGAAACCAAGTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACCGAAACCAAGTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACCGAAACCAAGTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac #### Rce1_ID578_4 --> 0 - 1 Original Alignment ATCCTTTTCCTGGGTCCA-CTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCACCTGA-GCAGCTCTCTATGGATTGCCCTTGTGACCTAACAGATGGGCTGAAGGTTGTCCTGggtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from CESAR ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCACCTGAGCAGCTCTCTATGGATTGCCCTTGTGACCTAACAGATGGGCTGAAGGTTGTCCTGggtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from Spaln_aa2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCACCTGAGCAGCTCTCTATGGATTGCCCTTGTGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from Spaln_nt2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCACCTGAGCAGCTCTCTATGGATTGCCCTTGTGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from Pairagon ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCACCTGAGCAGCTCTCTATGGATTGCCCTTGTGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from Exonerate_protein2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCACCTGAGCAGCTCTCTATGGATTGCCCTTGTGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from Exonerate_coding2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCACCTGAGCAGCTCTCTATGGATTGCCCTTGTGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg Alignment from GeneWise ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG actggattgtgataaaggtctttcattttccttttggttcttatgcctagATCCTTTTCCCAGGTCCACCTGAGCAGCTCTCTATGGATTGCCCTTGTGACCTAACAGATGGGCTGAAGGTTGTCCTGGgtatggcttgaagactggggaaaaggtaggcacaggcagcctagaacatg #### Rcor2_ID2092_3 --> 2 - 0 Original Alignment ttGACAAGTACATTGCAATGGCCAAGGAG-AAGCATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagttGACAAGTACATCGCAATGGCCAAGGAGCAAGCATGGCT-TAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from CESAR ttGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagttGACAAGTACATCGCAATGGCCAAGGAGCAAGCATGGCTTAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from Spaln_aa2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGCAAGCATGGCTTAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from Spaln_nt2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGCAAGCATGGCTTAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from Pairagon TTGACAAGTACATTGCAATGGCCAAGGAG-AAGCATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGCAAGCATGGCT-TAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from Exonerate_protein2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGCAAGCATGGCTTAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from Exonerate_coding2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGCAAGCATGGCTTAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from GeneWise TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGCAAGCATGGCTTAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTAT-TACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCTGGTGAAGTATCTACT-CTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCTGGTGAAGTATCTACTCTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCTGGTGAAGTATCTACTCTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCTGGTGAAGTATCTACTCTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCTGGTGAAGTATCTACTCTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCTGGTGAAGTATCTACTCTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCTGGTGAAGTATCTACTCTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCTGGTGAAGTATCTACTCTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACT-GGAGACCCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagtGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTCGGAG-CCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagtGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTCGGAGCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTCGGAGCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTCGGAGCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTCGGAGCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTCGGAGCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTCGGAGCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTCGGAGCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAG-TTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg ttcatatttttagcttagtttaatggttttacttaattttcctcctcaagGCTAATACCAAGCTTCAACTCCC-CTGGACCACTGATGAGCAACTTCTAGCAGTTCAAggtaattcaggccatggtgagtcccaagaactctagagacctttaatcttt Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg ttcatatttttagcttagtttaatggttttacttaattttcctcctcaagGCTAATACCAAGCTTCAACTCCCCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAggtaattcaggccatggtgagtcccaagaactctagagacctttaatcttt Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ttcatatttttagcttagtttaatggttttacttaattttcctcctcaagGCTAATACCAAGCTTCAACTCCCCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgtaattcaggccatggtgagtcccaagaactctagagacctttaatcttt Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ttcatatttttagcttagtttaatggttttacttaattttcctcctcaagGCTAATACCAAGCTTCAACTCCCCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgtaattcaggccatggtgagtcccaagaactctagagacctttaatcttt Alignment from Pairagon GCTAATACCAAG-TTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ttcatatttttagcttagtttaatggttttacttaattttcctcctcaagGCTAATACCAAGCTTCAACTCCC-CTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgtaattcaggccatggtgagtcccaagaactctagagacctttaatcttt Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ttcatatttttagcttagtttaatggttttacttaattttcctcctcaagGCTAATACCAAGCTTCAACTCCCCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgtaattcaggccatggtgagtcccaagaactctagagacctttaatcttt Alignment from Exonerate_coding2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ttcatatttttagcttagtttaatggttttacttaattttcctcctcaagGCTAATACCAAGCTTCAACTCCCCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgtaattcaggccatggtgagtcccaagaactctagagacctttaatcttt Alignment from GeneWise GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ttcatatttttagcttagtttaatggttttacttaattttcctcctcaagGCTAATACCAAGCTTCAACTCCCCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgtaattcaggccatggtgagtcccaagaactctagagacctttaatcttt #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGA-GGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagctATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGACGGGGCTC-TGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagctATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGACGGGGCTCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGACGGGGCTCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGACGGGGCTCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGACGGGGCTCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGACGGGGCTCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGACGGGGCTCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGACGGGGCTCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGG-CTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaaggCCATCTACAGACCCACTGTATGACACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCCTGCTGATCA-CCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from CESAR gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGG-CTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaaggCCATCTACAGACCCACTGTATGACACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCCTGCTGATCA-CCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCCTGCTGATCACCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCCTGCTGATCACCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from Pairagon GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGG-CTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCCTGCTGATCA-CCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCCTGCTGATCACCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from Exonerate_coding2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCCTGCTGATCACCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from GeneWise GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCCTGCTGATCACCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggataggtGTCTCTTTGGAGGTCTCACGAGCTCA-GTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCaggtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from CESAR gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggataggtGTCTCTTTGGAGGTCTCACGAGCTCAGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCaggtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGGTCTCACGAGCTCAGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGGTCTCACGAGCTCAGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from Pairagon GTGTCTCTTTGGAGGGCTCA-GAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGGTCTCACGAGCTCA-GTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGGTCTCACGAGCTCAGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from Exonerate_coding2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGGTCTCACGAGCTCAGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct Alignment from GeneWise GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG gcacatgagggaggtcctcagagaacagtcttgcctttttgtctggatagGTGTCTCTTTGGAGGTCTCACGAGCTCAGTTCCAGGACCTGGTACAGCTCATC------TATTGTCGTACCAGgtatatctgcctggggggcacctgctgagctctcaaccccactcactcct #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGC-CGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCCGGCTTTCTG-TGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAggtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCCGGCTTTCTGTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAggtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCCGGCTTTCTGTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCCGGCTTTCTGTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCG-CCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCCGGCTTTCTGT-GATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCCGGCTTTCTGTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCCGGCTTTCTGTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtacggatccgtataaactcccctgactctcctgtctgtcccgcccacagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCGCCCGGCTTTCTGTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGgtaggacccccaccaccttcccctgtgccactgttttggagtagaaacca #### Rnaseh2c_ID1103_2 --> 2 - 0 Original Alignment ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCG-GAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagggCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGCGAGGACA-AACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from CESAR ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagggCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGCGAGGACAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from Spaln_aa2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGCGAGGACAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from Spaln_nt2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGCGAGGACAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from Pairagon GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCG-GAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGCGAGGACAAA-CAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from Exonerate_protein2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGCGAGGACAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from Exonerate_coding2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGCGAGGACAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from GeneWise GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGCGAGGACAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCC-AAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGGTCCAGATGCCCAAAGTGC-TAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGGTCCAGATGCCCAAAGTGCTAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGGTCCAGATGCCCAAAGTGCTAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from Spaln_nt2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGGTCCAGATGCCCAAAGTGCTAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATG-CCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGGTCCAGATGCCCAAAGTGC-TAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from Exonerate_protein2genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGGTCCAGATGCCCAAAGTGCTAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGgtgagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from Exonerate_coding2genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATT tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGGTCCAGATGCCCAAAGTGCTAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGGTGagtatacttaggagccctttttctcctctggcagctggtcaatcctt Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCC---CAGGTCCCTGAGGAC tgggtgagggcagtagctgctgtcccaaaactcaaagtccccttccacagGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACATTGTGGGGTCTGGAAACGGTCCCAGGTCCAGATGCCCAAAGTGCTAGGGCCCTAGGTTGGCCCAGCCTAGCAGCAGCGGTGAGTATACTTAGGAGCCCTTTTTCTcctctggcagctggtcaatcctt #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTG-AGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG aggtcctgtcctttggaattctttaattgagcactgcttctgtgttccagCAATCTGAGGAGGATGTGCAGCCAGT-TGATGCACGATTCACACGGCAGACACCAGTGGATAGTCCAGATGACACAGCCCTTACTGAGAGTGCCAACCAAGCCTTCCTGgtgctggcctggggttatgggaaaaaggattgtccctagggattggagat Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG aggtcctgtcctttggaattctttaattgagcactgcttctgtgttccagCAATCTGAGGAGGATGTGCAGCCAGTTGATGCACGATTCACACGGCAGACACCAGTGGATAGTCCAGATGACACAGCCCTTACTGAGAGTGCCAACCAAGCCTTCCTGgtgctggcctggggttatgggaaaaaggattgtccctagggattggagat Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG aggtcctgtcctttggaattctttaattgagcactgcttctgtgttccagCAATCTGAGGAGGATGTGCAGCCAGTTGATGCACGATTCACACGGCAGACACCAGTGGATAGTCCAGATGACACAGCCCTTACTGAGAGTGCCAACCAAGCCTTCCTGgtgctggcctggggttatgggaaaaaggattgtccctagggattggagat Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG aggtcctgtcctttggaattctttaattgagcactgcttctgtgttccagCAATCTGAGGAGGATGTGCAGCCAGTTGATGCACGATTCACACGGCAGACACCAGTGGATAGTCCAGATGACACAGCCCTTACTGAGAGTGCCAACCAAGCCTTCCTGgtgctggcctggggttatgggaaaaaggattgtccctagggattggagat Alignment from Pairagon CAATCAGAAGAGGATGTG-AGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG aggtcctgtcctttggaattctttaattgagcactgcttctgtgttccagCAATCTGAGGAGGATGTGCAGCCAG-TTGATGCACGATTCACACGGCAGACACCAGTGGATAGTCCAGATGACACAGCCCTTACTGAGAGTGCCAACCAAGCCTTCCTGgtgctggcctggggttatgggaaaaaggattgtccctagggattggagat Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG aggtcctgtcctttggaattctttaattgagcactgcttctgtgttccagCAATCTGAGGAGGATGTGCAGCCAGTTGATGCACGATTCACACGGCAGACACCAGTGGATAGTCCAGATGACACAGCCCTTACTGAGAGTGCCAACCAAGCCTTCCTGgtgctggcctggggttatgggaaaaaggattgtccctagggattggagat Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG aggtcctgtcctttggaattctttaattgagcactgcttctgtgttccagCAATCTGAGGAGGATGTGCAGCCAGTTGATGCACGATTCACACGGCAGACACCAGTGGATAGTCCAGATGACACAGCCCTTACTGAGAGTGCCAACCAAGCCTTCCTGgtgctggcctggggttatgggaaaaaggattgtccctagggattggagat Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG aggtcctgtcctttggaattctttaattgagcactgcttctgtgttccagCAATCTGAGGAGGATGTGCAGCCAGTTGATGCACGATTCACACGGCAGACACCAGTGGATAGTCCAGATGACACAGCCCTTACTGAGAGTGCCAACCAAGCCTTCCTGgtgctggcctggggttatgggaaaaaggattgtccctagggattggagat #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTCCGGCACATCAATTGG-GATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGCGACGACC-CTTGGCCTGCCGTGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from CESAR AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGCGACGACCCTTGGCCTGCCGTGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Spaln_aa2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGCGACGACCCTTGGCCTGCCGTGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGCGACGACCCTTGGCCTGCCGTGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Pairagon AGGCACCCCTTTTTCCGGCACATCAATTGG-GATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGCGACGA-CCCTTGGCCTGCCGTGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Exonerate_protein2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGCGACGACCCTTGGCCTGCCGTGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Exonerate_coding2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGCGACGACCCTTGGCCTGCCGTGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from GeneWise AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGCGACGACCCTTGGCCTGCCGTGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGGAACCCCACTCAGCGAATT-GGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGAACCCCACTCAGCGAATTCGGGG-TGGCCTGGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from CESAR TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGAACCCCACTCAGCGAATTCGGGGTGGCCTGGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from Spaln_aa2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGAACCCCACTCAGCGAATTCGGGGTGGCCTGGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from Spaln_nt2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGAACCCCACTCAGCGAATTCGGGGTGGCCTGGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from Pairagon TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGAACCCCACTCAGCGAATTCGGGGTGGCCTGGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGAACCCCACTCAGCGAATTCGGGGTGGCCTGGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from Exonerate_coding2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGAACCCCACTCAGCGAATTCGGGGTGGCCTGGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG ctgggcacttaccatctacttctctccagaccttccactctgtcctgcagTTTCTGAAGCGGAACCCCACTCAGCGAATTCGGGGTGGCCTGGGAGATGCTGCTGATGTCCAGgtaggcatggatatgttacagtgaacttaggctggaggatgacatggata #### Rps6kb2_ID372_10 --> 0 - 0 Original Alignment CCGCCCTTCACT-GCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttggggagatctcttccaggtcccctcccccatgtctccttcagCCGCCCTTCACTCGCCG-GAACCGGAAGAAAACTACGGATAAAATCATTAAAGGGAAGCTGGTGCTTCCCCCGTACCTCACCCCAGACGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttatttctgcctcctccctaaaccc Alignment from CESAR CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttggggagatctcttccaggtcccctcccccatgtctccttcagCCGCCCTTCACTCGCCGGAACCGGAAGAAAACTACGGATAAAATCATTAAAGGGAAGCTGGTGCTTCCCCCGTACCTCACCCCAGACGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttatttctgcctcctccctaaaccc Alignment from Spaln_aa2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttggggagatctcttccaggtcccctcccccatgtctccttcagCCGCCCTTCACTCGCCGGAACCGGAAGAAAACTACGGATAAAATCATTAAAGGGAAGCTGGTGCTTCCCCCGTACCTCACCCCAGACGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttatttctgcctcctccctaaaccc Alignment from Spaln_nt2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttggggagatctcttccaggtcccctcccccatgtctccttcagCCGCCCTTCACTCGCCGGAACCGGAAGAAAACTACGGATAAAATCATTAAAGGGAAGCTGGTGCTTCCCCCGTACCTCACCCCAGACGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttatttctgcctcctccctaaaccc Alignment from Pairagon CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttggggagatctcttccaggtcccctcccccatgtctccttcagCCGCCCTTCACTCGCCGGAACCGGAAGAAAACTACGGATAAAATCATTAAAGGGAAGCTGGTGCTTCCCCCGTACCTCACCCCAGACGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttatttctgcctcctccctaaaccc Alignment from Exonerate_protein2genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttggggagatctcttccaggtcccctcccccatgtctccttcagCCGCCCTTCACTCGCCGGAACCGGAAGAAAACTACGGATAAAATCATTAAAGGGAAGCTGGTGCTTCCCCCGTACCTCACCCCAGACGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttatttctgcctcctccctaaaccc Alignment from Exonerate_coding2genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttggggagatctcttccaggtcccctcccccatgtctccttcagCCGCCCTTCACTCGCCGGAACCGGAAGAAAACTACGGATAAAATCATTAAAGGGAAGCTGGTGCTTCCCCCGTACCTCACCCCAGACGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttatttctgcctcctccctaaaccc Alignment from GeneWise CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttggggagatctcttccaggtcccctcccccatgtctccttcagCCGCCCTTCACTCGCCGGAACCGGAAGAAAACTACGGATAAAATCATTAAAGGGAAGCTGGTGCTTCCCCCGTACCTCACCCCAGACGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttatttctgcctcctccctaaaccc #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTA-CTGGGCAAGGGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacaggACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACCTGGGCAAGG-GGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from CESAR gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacaggACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACCTGGGCAAGGGGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACCTGGGCAAGGGGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACCTGGGCAAGGGGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from Pairagon GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACCTGGGCAAGGGGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACCTGGGCAAGGGGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from Exonerate_coding2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACCTGGGCAAGGGGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACCTGGGCAAGGGGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca #### Rrp12_ID8300_23 --> 0 - 1 Original Alignment GTGATCCTGTGCACCAAG-GAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAg cacccagcctgtgcttcagttccatgtcaaggcttggtcatctgttacagGTGATCCTATGCACCAAGCGAGGTGTCAG-GGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGACATGCTTTCCTGCGCTTTGGCTCCAACCAGGAAggtacacgggctgagaactggagtggacaaactgccttggcccagagagga Alignment from CESAR GTGATCCTGTGCACCAAG-GAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAg cacccagcctgtgcttcagttccatgtcaaggcttggtcatctgttacagGTGATCCTATGCACCAAGCGAGGTGTCA-GGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGACATGCTTTCCTGCGCTTTGGCTCCAACCAGGAAggtacacgggctgagaactggagtggacaaactgccttggcccagagagga Alignment from Spaln_aa2Genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtgcttcagttccatgtcaaggcttggtcatctgttacagGTGATCCTATGCACCAAGCGAGGTGTCAGGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGACATGCTTTCCTGCGCTTTGGCTCCAACCAGGAAGgtacacgggctgagaactggagtggacaaactgccttggcccagagagga Alignment from Spaln_nt2Genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtgcttcagttccatgtcaaggcttggtcatctgttacagGTGATCCTATGCACCAAGCGAGGTGTCAGGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGACATGCTTTCCTGCGCTTTGGCTCCAACCAGGAAGgtacacgggctgagaactggagtggacaaactgccttggcccagagagga Alignment from Pairagon GTGATCCTGTGCACCAAG-GAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtgcttcagttccatgtcaaggcttggtcatctgttacagGTGATCCTATGCACCAAGCGAGGTGTCAG-GGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGACATGCTTTCCTGCGCTTTGGCTCCAACCAGGAAGgtacacgggctgagaactggagtggacaaactgccttggcccagagagga Alignment from Exonerate_protein2genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtgcttcagttccatgtcaaggcttggtcatctgttacagGTGATCCTATGCACCAAGCGAGGTGTCAGGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGACATGCTTTCCTGCGCTTTGGCTCCAACCAGGAAGgtacacgggctgagaactggagtggacaaactgccttggcccagagagga Alignment from Exonerate_coding2genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtgcttcagttccatgtcaaggcttggtcatctgttacagGTGATCCTATGCACCAAGCGAGGTGTCAGGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGACATGCTTTCCTGCGCTTTGGCTCCAACCAGGAAGgtacacgggctgagaactggagtggacaaactgccttggcccagagagga Alignment from GeneWise GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG cacccagcctgtgcttcagttccatgtcaaggcttggtcatctgttacagGTGATCCTATGCACCAAGCGAGGTGTCAGGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGACATGCTTTCCTGCGCTTTGGCTCCAACCAGGAAGgtacacgggctgagaactggagtggacaaactgccttggcccagagagga #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAA-AACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagagGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAACAACTTCC-GCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from CESAR agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagagGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAACAACTTCCGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAACAACTTCCGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAACAACTTCCGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAACAACTTCCGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAACAACTTCCGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Exonerate_coding2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAACAACTTCCGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAACAACTTCCGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag #### Rrp12_ID8315_8 --> 2 - 0 Original Alignment gtTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTG-GTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtaggtTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGCGTGAAGAGCT-CAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from CESAR gtTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtaggtTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGCGTGAAGAGCTCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from Spaln_aa2Genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGCGTGAAGAGCTCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from Spaln_nt2Genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGCGTGAAGAGCTCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from Pairagon GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTG-GTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGCGTGAAGAGCT-CAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from Exonerate_protein2genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGCGTGAAGAGCTCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from Exonerate_coding2genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGCGTGAAGAGCTCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca Alignment from GeneWise GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG agtggaagtgggagtagtctaggagaggtctctgatgtttctcattgtagGTTCCAAAGAGGCCACTACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGCGTGAAGAGCTCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagtgctagacacaggaggaaggggaaattagtgagtgagtggggcca #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGT-GGCAGTGGCAAGAGCATGAATgc gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCATATATCGTGCTCAGTCGGCAGTG-CAAGAGCATGAATgcgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCATATATCGTGCTCAGTCGGCAGTGCAAGAGCATGAATgcgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCATATATCGTGCTCAGTCGGCAGTGCAAGAGCATGAATGCgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCATATATCGTGCTCAGTCGGCAGTGCAAGAGCATGAATGCgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGT-GGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCATATATCGTGCTCAGTCGGCAGT-GCAAGAGCATGAATGCgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCATATATCGTGCTCAGTCGGCAGTGCAAGAGCATGAATGCGtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCATATATCGTGCTCAGTCGGCAGTGCAAGAGCATGAATGCGtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCGAACACCATCACCAAA gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCATATATCGTGCTCAGTCGGCAGTGCAAGAGCATGAATGCGTGGGTATGGGTAGGAgctggaagggtggggtagcaagccggaaggatgg #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCA-GCAGTGTACTGCATCGAGGATAAGat gctccgagggacctgtatgaagctgggttgcccctgctcccttcccccaggaCTGCTAGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCACGCAG-GTACTGCATAGAGGATAAGatgtaagagtggccatggcaacatgaaatagggacagctgtgaacatggggc Alignment from CESAR gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat gctccgagggacctgtatgaagctgggttgcccctgctcccttcccccaggaCTGCTAGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCACGCAGGTACTGCATAGAGGATAAGatgtaagagtggccatggcaacatgaaatagggacagctgtgaacatggggc Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccgagggacctgtatgaagctgggttgcccctgctcccttcccccagGACTGCTAGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCACGCAGGTACTGCATAGAGGATAAGATgtaagagtggccatggcaacatgaaatagggacagctgtgaacatggggc Alignment from Spaln_nt2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccgagggacctgtatgaagctgggttgcccctgctcccttcccccagGACTGCTAGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCACGCAGGTACTGCATAGAGGATAAGATgtaagagtggccatggcaacatgaaatagggacagctgtgaacatggggc Alignment from Pairagon GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCA-GCAGTGTACTGCATCGAGGATAAGAT gctccgagggacctgtatgaagctgggttgcccctgctcccttcccccagGACTGCTAGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCACGCAG-GTACTGCATAGAGGATAAGATgtaagagtggccatggcaacatgaaatagggacagctgtgaacatggggc Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccgagggacctgtatgaagctgggttgcccctgctcccttcccccagGACTGCTAGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCACGCAGGTACTGCATAGAGGATAAGATgtaagagtggccatggcaacatgaaatagggacagctgtgaacatggggc Alignment from Exonerate_coding2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccgagggacctgtatgaagctgggttgcccctgctcccttcccccagGACTGCTAGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCACGCAGGTACTGCATAGAGGATAAGATgtaagagtggccatggcaacatgaaatagggacagctgtgaacatggggc Alignment from GeneWise GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccgagggacctgtatgaagctgggttgcccctgctcccttcccccagGACTGCTAGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCACGCAGGTACTGCATAGAGGATAAGATgtaagagtggccatggcaacatgaaatagggacagctgtgaacatggggc #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCT-GGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTCGGCAACC-TGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTCGGCAACCTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTCGGCAACCTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTCGGCAACCTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCT-GGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTCGGCAACC-TGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTCGGCAACCTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTCGGCAACCTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTCGGCAACCTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTG-GAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg gtggaccagcttaggagataccatttacatggaaaattatatttttctaggCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------CGAGGAGGAGA-CCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg gtggaccagcttaggagataccatttacatggaaaattatatttttctaggCTCCGGGGCCGGGGTCGGCGCCGAGTTCCCCGAGGAGGAGAC------CTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCCCGAGGAGGAGAC------CTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCC-----CCGAGGAGGA-GACCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCC-----CCGAGGAGGAGA-CCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCCCGAGGAGGAGAC------CTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCCCGAGGAGGAGAC------CTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCCCGAGGAGGAGAC------CTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAG-TTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatggcttctggtcttgacagagtgaaactatttcagCAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAATTAGAGGGCGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGGATGGCTGATGGCCTGAGGGAACGAGAGCTTAGAAGAAA-CCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCCAGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATGgtttggcaccactttgtgatggtacaattagtcaacaggtaagcaaagtg Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatggcttctggtcttgacagagtgaaactatttcagCAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAATTAGAGGGCGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGGATGGCTGATGGCCTGAGGGAACGAGAGCTTAGAAGAAACCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCCAGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATGgtttggcaccactttgtgatggtacaattagtcaacaggtaagcaaagtg Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatggcttctggtcttgacagagtgaaactatttcagCAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAATTAGAGGGCGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGGATGGCTGATGGCCTGAGGGAACGAGAGCTTAGAAGAAACCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCCAGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATGgtttggcaccactttgtgatggtacaattagtcaacaggtaagcaaagtg Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatggcttctggtcttgacagagtgaaactatttcagCAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAATTAGAGGGCGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGGATGGCTGATGGCCTGAGGGAACGAGAGCTTAGAAGAAACCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCCAGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATGgtttggcaccactttgtgatggtacaattagtcaacaggtaagcaaagtg Alignment from Pairagon CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAG-TTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatggcttctggtcttgacagagtgaaactatttcagCAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAATTAGAGGGCGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGGATGGCTGATGGCCTGAGGGAACGAGAGCTTAGAAGAAA-CCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCCAGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATGgtttggcaccactttgtgatggtacaattagtcaacaggtaagcaaagtg Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatggcttctggtcttgacagagtgaaactatttcagCAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAATTAGAGGGCGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGGATGGCTGATGGCCTGAGGGAACGAGAGCTTAGAAGAAACCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCCAGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATGgtttggcaccactttgtgatggtacaattagtcaacaggtaagcaaagtg Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatggcttctggtcttgacagagtgaaactatttcagCAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAATTAGAGGGCGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGGATGGCTGATGGCCTGAGGGAACGAGAGCTTAGAAGAAACCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCCAGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATGgtttggcaccactttgtgatggtacaattagtcaacaggtaagcaaagtg Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatggcttctggtcttgacagagtgaaactatttcagCAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAATTAGAGGGCGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGGATGGCTGATGGCCTGAGGGAACGAGAGCTTAGAAGAAACCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCCAGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATGgtttggcaccactttgtgatggtacaattagtcaacaggtaagcaaagtg #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAA-AAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagggGTACTGCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAACGAGAAGCCTG-CTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagggGTACTGCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAACGAGAAGCCTGCTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAACGAGAAGCCTGCTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAACGAGAAGCCTGCTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAA-AAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAACGAGAAGCCTG-CTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAACGAGAAGCCTGCTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAACGAGAAGCCTGCTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAACGAGAAGCCTGCTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAG-AGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcaggAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGCAGGA-CCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcaggAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGCAGGACCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGCAGGACCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGCAGGACCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGCAGGACCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGCAGGACCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGCAGGACCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGCAGGACCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag #### Sart1_ID971_4 --> 2 - 2 Original Alignment agGCGGGCACCAAGGAGGAGCCCGTG-GCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagagGCGGGCACCAAGGAGGAATCTGTTCGCAGCCG-TGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGgggtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from CESAR agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagagGCGGGCACCAAGGAGGAATCTGTTCGCAGCCGTGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGgggtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Spaln_aa2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTCGCAGCCGTGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Spaln_nt2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTCGCAGCCGTGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Pairagon AGGCGGGCACCAAGGAGGAGCCCG-TGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTCGCAGCCG-TGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Exonerate_protein2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTCGCAGCCGTGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Exonerate_coding2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTCGCAGCCGTGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from GeneWise AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTCGCAGCCGTGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag #### Sec31b_ID9028_24 --> 0 - 0 Original Alignment AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTAT-GAGAAGCTTTGCGAGGGGACA ctagggtcaggagccattattagggtcactccttctctccgtccctgcagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACGCCTTGAATGTCTGTATCGAGAAGC-TTGTGAAGGGACAgtaagtcctctgcccagtgtacctacactcctgcccagtctcagagacat Alignment from CESAR AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagggtcaggagccattattagggtcactccttctctccgtccctgcagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACGCCTTGAATGTCTGTATCGAGAAGCTTGTGAAGGGACAgtaagtcctctgcccagtgtacctacactcctgcccagtctcagagacat Alignment from Spaln_aa2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagggtcaggagccattattagggtcactccttctctccgtccctgcagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACGCCTTGAATGTCTGTATCGAGAAGCTTGTGAAGGGACAgtaagtcctctgcccagtgtacctacactcctgcccagtctcagagacat Alignment from Spaln_nt2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTAT-GAGAAGCTTTGCGAGGGGACA ctagggtcaggagccattattagggtcactccttctctccgtccctgcagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACGCCTTGAATGTCTGTATCGAGAAGC-TTGTGAAGGGACAgtaagtcctctgcccagtgtacctacactcctgcccagtctcagagacat Alignment from Pairagon AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTAT-GAGAAGCTTTGCGAGGGGACA ctagggtcaggagccattattagggtcactccttctctccgtccctgcagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACGCCTTGAATGTCTGTATCGAGAAGC-TTGTGAAGGGACAgtaagtcctctgcccagtgtacctacactcctgcccagtctcagagacat Alignment from Exonerate_protein2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagggtcaggagccattattagggtcactccttctctccgtccctgcagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACGCCTTGAATGTCTGTATCGAGAAGCTTGTGAAGGGACAgtaagtcctctgcccagtgtacctacactcctgcccagtctcagagacat Alignment from Exonerate_coding2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagggtcaggagccattattagggtcactccttctctccgtccctgcagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACGCCTTGAATGTCTGTATCGAGAAGCTTGTGAAGGGACAgtaagtcctctgcccagtgtacctacactcctgcccagtctcagagacat Alignment from GeneWise AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagggtcaggagccattattagggtcactccttctctccgtccctgcagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACGCCTTGAATGTCTGTATCGAGAAGCTTGTGAAGGGACAgtaagtcctctgcccagtgtacctacactcctgcccagtctcagagacat #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAA-CAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACCAGGCCC-GCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACCAGGCCCGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACCAGGCCCGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACCAGGCCCGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACCAGGCCCGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACCAGGCCCGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACCAGGCCCGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACCAGGCCCGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGG-CTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTCGGCCTGAAGA-CTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTggtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTCGGCCTGAAGACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTggtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTCGGCCTGAAGACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTCGGCCTGAAGACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTCGGCCTGAAGACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTCGGCCTGAAGACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTCGGCCTGAAGACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctggacagaaggctgagggtctttctcccttccacccctccagCTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTCGGCCTGAAGACTGGAGAGAGGCGCTGGCCTTGCTACTGACATATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTGgtgagagtgactccagcatgtgccaacatattgatgcaaagtggaggcag #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACTGCCAAGGAAGCC-TCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg gtattctggcttcagtttgtatacagtctctttattttgttttcccctagGCCTCCAAACACACTGCCAAGGAAGCCCTCTG-GTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAggtaagttggtcttgggagagaggagatcactgcataggagcagatgggga Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg gtattctggcttcagtttgtatacagtctctttattttgttttcccctagGCCTCCAAACACACTGCCAAGGAAGCCCTCTGGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAggtaagttggtcttgggagagaggagatcactgcataggagcagatgggga Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG gtattctggcttcagtttgtatacagtctctttattttgttttcccctagGCCTCCAAACACACTGCCAAGGAAGCCCTCTGGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtaagttggtcttgggagagaggagatcactgcataggagcagatgggga Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG gtattctggcttcagtttgtatacagtctctttattttgttttcccctagGCCTCCAAACACACTGCCAAGGAAGCCCTCTGGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtaagttggtcttgggagagaggagatcactgcataggagcagatgggga Alignment from Pairagon GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG gtattctggcttcagtttgtatacagtctctttattttgttttcccctagGCCTCCAAACACACTGCCAAGGAAGCCCTCTGGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtaagttggtcttgggagagaggagatcactgcataggagcagatgggga Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG gtattctggcttcagtttgtatacagtctctttattttgttttcccctagGCCTCCAAACACACTGCCAAGGAAGCCCTCTGGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtaagttggtcttgggagagaggagatcactgcataggagcagatgggga Alignment from Exonerate_coding2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG gtattctggcttcagtttgtatacagtctctttattttgttttcccctagGCCTCCAAACACACTGCCAAGGAAGCCCTCTGGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtaagttggtcttgggagagaggagatcactgcataggagcagatgggga Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG gtattctggcttcagtttgtatacagtctctttattttgttttcccctagGCCTCCAAACACACTGCCAAGGAAGCCCTCTGGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtaagttggtcttgggagagaggagatcactgcataggagcagatgggga #### Sema4g_ID9247_5 --> 0 - 1 Original Alignment GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAA-TGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg ccctcgccggtcctcaggaccatcgacttttcctaatcatgattatacagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGAAACTGTCCTT-TGACCCGGCCCGGGGCTTCACAGGCCTTATCATTggtacggacagccacgcctgcagccagcccccagtcccacgattctgtgat Alignment from CESAR GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg ccctcgccggtcctcaggaccatcgacttttcctaatcatgattatacagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGAAACTGTCCTTTGACCCGGCCCGGGGCTTCACAGGCCTTATCATTggtacggacagccacgcctgcagccagcccccagtcccacgattctgtgat Alignment from Spaln_aa2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ccctcgccggtcctcaggaccatcgacttttcctaatcatgattatacagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGAAACTGTCCTTTGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtacggacagccacgcctgcagccagcccccagtcccacgattctgtgat Alignment from Spaln_nt2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ccctcgccggtcctcaggaccatcgacttttcctaatcatgattatacagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGAAACTGTCCTTTGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtacggacagccacgcctgcagccagcccccagtcccacgattctgtgat Alignment from Pairagon GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAA-TGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ccctcgccggtcctcaggaccatcgacttttcctaatcatgattatacagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGAAACTGTCCTT-TGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtacggacagccacgcctgcagccagcccccagtcccacgattctgtgat Alignment from Exonerate_protein2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ccctcgccggtcctcaggaccatcgacttttcctaatcatgattatacagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGAAACTGTCCTTTGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtacggacagccacgcctgcagccagcccccagtcccacgattctgtgat Alignment from Exonerate_coding2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ccctcgccggtcctcaggaccatcgacttttcctaatcatgattatacagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGAAACTGTCCTTTGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtacggacagccacgcctgcagccagcccccagtcccacgattctgtgat Alignment from GeneWise GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ccctcgccggtcctcaggaccatcgacttttcctaatcatgattatacagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGAAACTGTCCTTTGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtacggacagccacgcctgcagccagcccccagtcccacgattctgtgat #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTG-AGAACTGAGGAGGCACCCATGCACTGGCTCAATg tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagatGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGCAGAACTG-GGAGGCACCCATGCACTGGCTCAATggtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagatGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGCAGAACTGGGAGGCACCCATGCACTGGCTCAATggtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGCAGAACTGGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGCAGAACTGGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTG-AGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGCAGAACTG-GGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGCAGAACTGGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGCAGAACTGGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG tgttcctgattgcacatgccatatatctctaaccctgctatcttccccagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGCAGAACTGGGAGGCACCCATGCACTGGCTCAATGgtgggcagagagtaactaggggttgggggaggggggagtccatttcttac #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTGCTG-GTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagatGCTGAGTTTGTGTTCTCTGTGCTGCGTGCGGGAGA-CAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagatGCTGAGTTTGTGTTCTCTGTGCTGCGTGCGGGAGACAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGCGTGCGGGAGACAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGCGTGCGGGAGACAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTGCTG-GTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGCGTGCGGGAGA-CAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGCGTGCGGGAGACAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGCGTGCGGGAGACAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGCGTGCGGGAGACAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCAGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGG-CGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCCGGCCCT-GCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAggtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCCGGCCCTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAggtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCCGGCCCTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCCGGCCCTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCCGGCCCTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCCGGCCCTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCCGGCCCTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCCGGCCCTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTA-ATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag tatgcatgtcaccttccagaaatagatgctgccctatgctctgactgcaggCCTCCAGCAACACGTGTGAGCGATAAAGTGCATGATACCAC-AGATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCaggtgaggaattactagtctatggcaccctaggttttaattgtatttggatt Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag tatgcatgtcaccttccagaaatagatgctgccctatgctctgactgcaggCCTCCAGCAACACGTGTGAGCGATAAAGTGCATGATACCACAGATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCaggtgaggaattactagtctatggcaccctaggttttaattgtatttggatt Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtcaccttccagaaatagatgctgccctatgctctgactgcagGCCTCCAGCAACACGTGTGAGCGATAAAGTGCATGATACCACAGATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtgaggaattactagtctatggcaccctaggttttaattgtatttggatt Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtcaccttccagaaatagatgctgccctatgctctgactgcagGCCTCCAGCAACACGTGTGAGCGATAAAGTGCATGATACCACAGATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtgaggaattactagtctatggcaccctaggttttaattgtatttggatt Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTA-ATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtcaccttccagaaatagatgctgccctatgctctgactgcagGCCTCCAGCAACACGTGTGAGCGATAAAGTGCATGATACCAC-AGATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtgaggaattactagtctatggcaccctaggttttaattgtatttggatt Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtcaccttccagaaatagatgctgccctatgctctgactgcagGCCTCCAGCAACACGTGTGAGCGATAAAGTGCATGATACCACAGATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtgaggaattactagtctatggcaccctaggttttaattgtatttggatt Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtcaccttccagaaatagatgctgccctatgctctgactgcagGCCTCCAGCAACACGTGTGAGCGATAAAGTGCATGATACCACAGATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtgaggaattactagtctatggcaccctaggttttaattgtatttggatt Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtcaccttccagaaatagatgctgccctatgctctgactgcagGCCTCCAGCAACACGTGTGAGCGATAAAGTGCATGATACCACAGATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtgaggaattactagtctatggcaccctaggttttaattgtatttggatt #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGC-CCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCC-CCCACCTGGGCACCATGGCCCTCCTCCAATGggtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCCCCCACCTGGGCACCATGGCCCTCCTCCAATGggtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCCCCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCCCCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCCCCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCCCCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCCCCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCCCCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTTGAG-ACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGCACACGGCTGA-GGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from CESAR GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGCACACGGCTGAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from Spaln_aa2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGCACACGGCTGAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from Spaln_nt2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGCACACGGCTGAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from Pairagon GGGAAGGAGTTTGAG-ACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGCACACGGCTG-AGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGCACACGGCTGAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGCACACGGCTGAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from GeneWise GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGCACACGGCTGAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCC-AAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCCAAGA-CCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGggtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCCAAGACCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGggtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCCAAGACCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCCAAGACCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCCAAGACCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCCAAGACCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCCAAGACCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCCAAGACCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTAGAGCGG-CTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagggAGTCGTGAGGAGTTAGTAGAGCGGCCTGC-GACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagggAGTCGTGAGGAGTTAGTAGAGCGGCCTGCGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Exonerate_coding2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from GeneWise GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTG-GGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGa agccctggacacttgaaaagtgatccctctcttgtccgctctcctctcagAGAGCTGCGGCTGTGCGGCA-CGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGagtgagttggatggggaacacctcatacatcaggagggatccttgaatacc Alignment from CESAR AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGa agccctggacacttgaaaagtgatccctctcttgtccgctctcctctcagAGAGCTGCGGCTGTGCGGCACGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGagtgagttggatggggaacacctcatacatcaggagggatccttgaatacc Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA agccctggacacttgaaaagtgatccctctcttgtccgctctcctctcagAGAGCTGCGGCTGTGCGGCACGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGAgtgagttggatggggaacacctcatacatcaggagggatccttgaatacc Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA agccctggacacttgaaaagtgatccctctcttgtccgctctcctctcagAGAGCTGCGGCTGTGCGGCACGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGAgtgagttggatggggaacacctcatacatcaggagggatccttgaatacc Alignment from Pairagon AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA agccctggacacttgaaaagtgatccctctcttgtccgctctcctctcagAGAGCTGCGGCTGTGCGGCACGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGAgtgagttggatggggaacacctcatacatcaggagggatccttgaatacc Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA agccctggacacttgaaaagtgatccctctcttgtccgctctcctctcagAGAGCTGCGGCTGTGCGGCACGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGAgtgagttggatggggaacacctcatacatcaggagggatccttgaatacc Alignment from Exonerate_coding2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA agccctggacacttgaaaagtgatccctctcttgtccgctctcctctcagAGAGCTGCGGCTGTGCGGCACGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGAgtgagttggatggggaacacctcatacatcaggagggatccttgaatacc Alignment from GeneWise AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA agccctggacacttgaaaagtgatccctctcttgtccgctctcctctcagAGAGCTGCGGCTGTGCGGCACGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGAgtgagttggatggggaacacctcatacatcaggagggatccttgaatacc #### Sfxn2_ID9970_8 --> 2 - 0 Original Alignment tcCTGTTGCCTGTCATCATGGAGAGGCTG-GAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagtcCTGTTGCCTGTCATCATGGAGAGGCTGCGAGAGAC-ACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from CESAR tcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagtcCTGTTGCCTGTCATCATGGAGAGGCTGCGAGAGACACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from Spaln_aa2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGCGAGAGACACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from Spaln_nt2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGCGAGAGACACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from Pairagon TCCTGTTGCCTGTCATCATGGAGAGGCTG-GAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGCGAGAGAC-ACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from Exonerate_protein2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGCGAGAGACACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from Exonerate_coding2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGCGAGAGACACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from GeneWise TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGCGAGAGACACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat #### Sfxn3_ID9284_2 --> 1 - 2 Original Alignment gGCTGGTGTGGCA-ACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACag acaggtctgacccctgccacagcctctttctttttttttttttttttaaggGCTGGTGCGGCACACCCCGG-TCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGACACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACaggtagtacatatcctgtgcctcctgcctgagtgctatgcccagagcatgcc Alignment from CESAR gGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACag acaggtctgacccctgccacagcctctttctttttttttttttttttaaggGCTGGTGCGGCACACCCCGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGACACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACaggtagtacatatcctgtgcctcctgcctgagtgctatgcccagagcatgcc Alignment from Spaln_aa2Genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acaggtctgacccctgccacagcctctttctttttttttttttttttaagGGCTGGTGCGGCACACCCCGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGACACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtagtacatatcctgtgcctcctgcctgagtgctatgcccagagcatgcc Alignment from Spaln_nt2Genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acaggtctgacccctgccacagcctctttctttttttttttttttttaagGGCTGGTGCGGCACACCCCGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGACACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtagtacatatcctgtgcctcctgcctgagtgctatgcccagagcatgcc Alignment from Pairagon GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acaggtctgacccctgccacagcctctttctttttttttttttttttaagGGCTGGTGCGGCACACCCCGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGACACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtagtacatatcctgtgcctcctgcctgagtgctatgcccagagcatgcc Alignment from Exonerate_protein2genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acaggtctgacccctgccacagcctctttctttttttttttttttttaagGGCTGGTGCGGCACACCCCGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGACACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtagtacatatcctgtgcctcctgcctgagtgctatgcccagagcatgcc Alignment from Exonerate_coding2genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acaggtctgacccctgccacagcctctttctttttttttttttttttaagGGCTGGTGCGGCACACCCCGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGACACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtagtacatatcctgtgcctcctgcctgagtgctatgcccagagcatgcc Alignment from GeneWise GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAGG-- acaggtctgacccctgccacagcctctttctttttttttttttttttaagGGCTGGTGCGGCACACCCCGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGACACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGGTAgtacatatcctgtgcctcctgcctgagtgctatgcccagagcatgcc #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ggggaatattgtgtagggacagtataagccttcctctcccccctcttcaggAAGACTCCGACTGTGGTGCTTCTGGC-GTGGGTCAATCAATCATTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGcggtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from CESAR gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ggggaatattgtgtagggacagtataagccttcctctcccccctcttcaggAAGACTCCGACTGTGGTGCTTCTGGCGTGGGTCAATCAATCATTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGcggtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCGTGGGTCAATCAATCATTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCGTGGGTCAATCAATCATTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from Pairagon GAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGC-GTGGGTCAATCAATCATTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCGTGGGTCAATCAATCATTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from Exonerate_coding2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCGTGGGTCAATCAATCATTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggggaatattgtgtagggacagtataagccttcctctcccccctcttcagGAAGACTCCGACTGTGGTGCTTCTGGCGTGGGTCAATCAATCATTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCGgtgagagacccccatcctcagccattcctggtccccatgacccctgtgcc #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACT-GCTCTGGGACTCAAGTCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctaggCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTCGCTCTGGGAC-CAAGTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctaggCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTCGCTCTGGGACCAAGTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTCGCTCTGGGACCAAGTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTCGCTCTGGGACCAAGTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACT-GCTCTGGGACTCAAGTCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTCGCTCTGGGAC-CAAGTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTCGCTCTGGGACCAAGTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTCGCTCTGGGACCAAGTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTCGCTCTGGGACCAAGTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment gaCAACCCATCTCAGAG-AGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga gccaggaggatgtttattccttcagaccagtccttttctattctccttagggCAACCCATCTCAGAGCAGTGGAGATC-CAAGGAAGCTTTAAAGTGTGATTCTgagtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from CESAR gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga gccaggaggatgtttattccttcagaccagtccttttctattctccttagggCAACCCATCTCAGAGCAGTGGAGATCCAAGGAAGCTTTAAAGTGTGATTCTgagtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from Spaln_aa2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGCAGTGGAGATCCAAGGAAGCTTTAAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from Spaln_nt2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGCAGTGGAGATCCAAGGAAGCTTTAAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from Pairagon GACAACCCATCTCAGAG-AGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGCAGTGGAGA-TCCAAGGAAGCTTTAAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from Exonerate_protein2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGCAGTGGAGATCCAAGGAAGCTTTAAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from Exonerate_coding2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGCAGTGGAGATCCAAGGAAGCTTTAAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from GeneWise GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGCAGTGGAGATCCAAGGAAGCTTTAAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGG-CAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagttATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCCAGTCCA-CTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGggtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagttATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCCAGTCCACTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGggtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCCAGTCCACTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCCAGTCCACTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGG-CAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCCAGTCCA-CTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCCAGTCCACTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCCAGTCCACTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCCAGTCCACTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACT-GACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagcTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTCGACAGAG-AACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtttttttgtttgtttg Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagcTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTCGACAGAGAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtctttttccttttttg Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTCGACAGAGAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtttttttgtttgtttg Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTCGACAGAGAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtttttttgtttgtttg Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACT-GACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTCGACAGAG-AACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtttttttgtttgtttg Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTCGACAGAGAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtttttttgtttgtttg Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTCGACAGAGAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtttttttgtttgtttg Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCC----------------------------------------------------- tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTCGACAGAGAACACCCCCTTCCCAGGTGAGTTGCAGAGGTGACATTGGATGCTACACCGTTTTTTTGTTTGTTTG #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTAC-ACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagcgGATTCCACGGGCACACACTCACTCTACCACCACCTACC-AGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagcgGATTCCACGGGCACACACTCACTCTACCACCACCTACCAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACCACCACCTACCAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACCACCACCTACCAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTA-CACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACCACCACCTACC-AGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACCACCACCTACCAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACCACCACCTACCAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACCACCACCTACCAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGA-GGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagaaCATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGACGGGGCCA-CCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaacagggt Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagaaCATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGACGGGGCCACCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaaaatgat Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGACGGGGCCACCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaacagggt Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGACGGGGCCACCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaacagggt Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGACGGGGCCACCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaacagggt Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGACGGGGCCACCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaacagggt Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGACGGGGCCACCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaacagggt Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGACGGGGCCACCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaacagggt #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCCTTC-CTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagtgTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGA-TGCCAAGTCACTGCAGGGAATTGGCTCCTCTTGCTCATCTGTGGCTggtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagtgTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATGCCAAGTCACTGCAGGGAATTGGCTCCTCTTGCTCATCTGTGGCTggtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATGCCAAGTCACTGCAGGGAATTGGCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATGCCAAGTCACTGCAGGGAATTGGCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from Pairagon TGTTTGCCTTCTCCAGCAGCTATGCCTT-CCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGAT-GCCAAGTCACTGCAGGGAATTGGCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATGCCAAGTCACTGCAGGGAATTGGCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATGCCAAGTCACTGCAGGGAATTGGCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG aggcaggggcatgatcttgctatgagggttttctctgtcttgctttgcagTGTTTGCCTTCTCCAGTAGCTATGCCTTCCCTGCTGATGCCAAGTCACTGCAGGGAATTGGCTCCTCTTGCTCATCTGTGGCTGgtaagcatgaaatcatcagtgtgtggggagctgagctggggacttatgtg #### Slc18a2_ID12938_6 --> 2 - 1 Original Alignment tgGGACCCCCCTTTGGAAGTGTG-CTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAg gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagtgGGACCCCCATTTGGCAGCGTGCCTCTATG-GTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAggtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from CESAR tgGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAg gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagtgGGACCCCCATTTGGCAGCGTGCCTCTATGGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAggtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Spaln_aa2Genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCCTCTATGGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Spaln_nt2Genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCCTCTATGGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Pairagon TGGGACCCCCCTTTGGAAGTGTG-CTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCCTCTATG-GTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Exonerate_protein2genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCCTCTATGGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Exonerate_coding2genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCCTCTATGGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from GeneWise TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCCTCTATGGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGC-GCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGGGCCGCCTTCA-CTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCaggtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGGGCCGCCTTCACTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCaggtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGGGCCGCCTTCACTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGGGCCGCCTTCACTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGG-CGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGGGCCGCCTTCA-CTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGGGCCGCCTTCACTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGGGCCGCCTTCACTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCTGGGGGGCCGCCTTCACTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTG-GTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTTCTGCGTGT-CGTGTCCGGCACAGCTGCTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCtgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTTCTGCGTGTCGTGTCCGGCACAGCTGCTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCtgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTTCTGCGTGTCGTGTCCGGCACAGCTGCTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTTCTGCGTGTCGTGTCCGGCACAGCTGCTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTG-GTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTTCTGCGTGT-CGTGTCCGGCACAGCTGCTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTTCTGCGTGTCGTGTCCGGCACAGCTGCTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTTCTGCGTGTCGTGTCCGGCACAGCTGCTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT ccagagctgtggttgctggccattagcgtgtaggtgtgtctcttccccagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTTCTGCGTGTCGTGTCCGGCACAGCTGCTGCCTTCATGCCCACCTTCCCCCTTCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaagacccctgattagtgtgaggtcgtgaaggctgcatgccggacccag #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTG-GTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGA-CACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAaggtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAaggtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTG-GTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGA-CACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGCGTGACACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCAT-CGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCATCCGCGCCT-CCGCCAGCTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCATCCGCGCCTCCGCCAGCTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from Spaln_aa2Genome gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagtggaaccttgtgtgctctcatccgcgcctccgccagctggcccagtcactgttcatggtgggagtgttactgggagccatgatgtttggctacctggcggacaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGG- gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCATCCGCgcctccgccagctggcccagtcactgttcatggtgggagtgttactgggagccatgatgtttggctacctggcggacaggtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCATCCGCGCCTCCGCCAGCTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAGgtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCATCCGCGCCTCCGCCAGCTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAGgtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from Exonerate_coding2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCATCCGCGCCTCCGCCAGCTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAGgtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gggtttcttgtgctcttcactgttcaacgtttctcctttctttaccacagTGGAACCTTGTGTGCTCTCATCCGCGCCTCCGCCAGCTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAGgtgagtcctgggaagccaaagagcttggctgaactgggattgggggcccc #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGG-CTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttaggTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCCTGGACC-CACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttaggTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCCTGGACCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCCTGGACCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCCTGGACCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCCTGGACCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCCTGGACCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCCTGGACCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGTAGGCCTGGACCCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCC-TTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagaaATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCCTTCAGCT-CCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCaggtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagaaATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCCTTCAGCTCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCaggtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCCTTCAGCTCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCCTTCAGCTCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCT-CCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCCTTCAGCT-CCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCCTTCAGCTCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCCTTCAGCTCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCCTTCAGCTCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTGGGG-CACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttaggaGCTGTGGGCCTGGTCCTGGGGCCACCCAT-CGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttaggaGCTGTGGGCCTGGTCCTGGGGCCACCCATCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from Exonerate_coding2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from GeneWise GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg #### Slc29a2_ID791_5 --> 2 - 1 Original Alignment ccTTCTGTGCCGTGCTT-CAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagccTTCTGTGCCGTGCTTCCAAG-CAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCagtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from CESAR ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagccTTCTGTGCCGTGCTTCCAAGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCagtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Spaln_aa2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCCAAGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Spaln_nt2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCCAAGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Pairagon CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCCAAGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Exonerate_protein2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCCAAGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Exonerate_coding2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCCAAGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from GeneWise CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCCAAGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCG-TGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCACTGGA-TGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCACTGGATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Spaln_aa2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCACTGGATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCACTGGATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCACTGGATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCACTGGATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCACTGGATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCACTGGATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTG-AACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagcCACCTGGAGTTGCAACGGAA-CAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGatgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from CESAR cCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagcCACCTGGAGTTGCAACGGAACAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGatgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Spaln_aa2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGCAACGGAACAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Spaln_nt2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGCAACGGAACAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Pairagon CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGCAACGGAACAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Exonerate_protein2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGCAACGGAACAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Exonerate_coding2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGCAACGGAACAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGCAACGGAACAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATT-GGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCA-AAAGGATCAGTATTTCCTAGATAAGAAGATGGTCacgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCacgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATT-GGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCC-AAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATG-AAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gtgcttctactgttgtcctgcttatgactttcttctccctgctccatcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAA-AGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAAGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGGgtaaggcactactgcaaatgaaggccatggtgaatgccagtctagtgaag Alignment from CESAR GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gtgcttctactgttgtcctgcttatgactttcttctccctgctccatcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAAGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGGgtaaggcactactgcaaatgaaggccatggtgaatgccagtctagtgaag Alignment from Spaln_aa2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gtgcttctactgttgtcctgcttatgactttcttctccctgctccatcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAAGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGGgtaaggcactactgcaaatgaaggccatggtgaatgccagtctagtgaag Alignment from Spaln_nt2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gtgcttctactgttgtcctgcttatgactttcttctccctgctccatcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAAGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGGgtaaggcactactgcaaatgaaggccatggtgaatgccagtctagtgaag Alignment from Pairagon GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gtgcttctactgttgtcctgcttatgactttcttctccctgctccatcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAAGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGGgtaaggcactactgcaaatgaaggccatggtgaatgccagtctagtgaag Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gtgcttctactgttgtcctgcttatgactttcttctccctgctccatcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAAGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGGgtaaggcactactgcaaatgaaggccatggtgaatgccagtctagtgaag Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gtgcttctactgttgtcctgcttatgactttcttctccctgctccatcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAAGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGGgtaaggcactactgcaaatgaaggccatggtgaatgccagtctagtgaag Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG gtgcttctactgttgtcctgcttatgactttcttctccctgctccatcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCGGCCATGCAAAGAAGAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAAGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGGgtaaggcactactgcaaatgaaggccatggtgaatgccagtctagtgaag #### Smc5_ID5113_20 --> 0 - 0 Original Alignment GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAA-GAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAACGAAAGGT-AAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from CESAR GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAACGAAAGGTAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Spaln_aa2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAACGAAAGGTAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Spaln_nt2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAACGAAAGGTAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Pairagon GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAACGAAAGGTAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Exonerate_protein2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAACGAAAGGTAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Exonerate_coding2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAACGAAAGGTAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from GeneWise GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAACGAAAGGTAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc #### Snx32_ID1068_10 --> 0 - 0 Original Alignment AAACTGGAAGGCCGGGTAGCCTCTGATGAGGAC-CTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCCTGAAGCTGT-TGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from CESAR AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCCTGAAGCTGTTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from Spaln_aa2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCCTGAAGCTGTTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from Spaln_nt2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCCTGAAGCTGTTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from Pairagon AAACTGGAAGGCCGGGTAGCCTCTGATGAGGA-CCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCCTGAAGCTGT-TGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from Exonerate_protein2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCCTGAAGCTGTTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from Exonerate_coding2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCCTGAAGCTGTTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from GeneWise AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCCTGAAGCTGTTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCTATCTCTGCTGCA-CTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gggtggggcttggtgtgcacattcatctcatttttcttttccacttccaggcCTGGCAGACAACTATATCCCCATTTCTGCTGCACCTGAGCA-TCTCGGAACCCAGGAAGTCAACCAACTCAAGaggtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from CESAR gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gggtggggcttggtgtgcacattcatctcatttttcttttccacttccaggcCTGGCAGACAACTATATCCCCATTTCTGCTGCACCTGAGCATCTCGGAACCCAGGAAGTCAACCAACTCAAGaggtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggggcttggtgtgcacattcatctcatttttcttttccacttccagGCCTGGCAGACAACTATATCCCCATTTCTGCTGCACCTGAGCATCTCGGAACCCAGGAAGTCAACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggggcttggtgtgcacattcatctcatttttcttttccacttccagGCCTGGCAGACAACTATATCCCCATTTCTGCTGCACCTGAGCATCTCGGAACCCAGGAAGTCAACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from Pairagon GCCTGGCAGACAACTATATCCCTATCTCTGCTGCA-CTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggggcttggtgtgcacattcatctcatttttcttttccacttccagGCCTGGCAGACAACTATATCCCCATTTCTGCTGCACCTGAGCA-TCTCGGAACCCAGGAAGTCAACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggggcttggtgtgcacattcatctcatttttcttttccacttccagGCCTGGCAGACAACTATATCCCCATTTCTGCTGCACCTGAGCATCTCGGAACCCAGGAAGTCAACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gggtggggcttggtgtgcacattcatctcatttttcttttccacttccagGCCTGGCAGACAACTATATCCCCATTTCTGCTGCACCTGAGCATCTCGGAACCCAGGAAGTCAACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg Alignment from GeneWise ----------------------------------------------------CTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG GGGTGGGGCTTGGTGTGCACATTCATCTCATTTTTCTTTTCCACTTCCAGGCCTGGCAGACAACTATATCCCCATTTCTGCTGCACCTGAGCATCTCGGAACCCAGGAAGTCAACCAACTCAAGAGgtatgagttcacactgtggctgtgttcacactgtgctcgcaccatggctg #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGACGACACCT-CCAGAGGGCCGACCGTGTTATGCACTCCCACAAGtgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGACGACACCTCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGtgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGACGACACCTCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGACGACACCTCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGACGACACCT-CCAGAGGGCCGACCGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGACGACACCTCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from Exonerate_coding2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGACGACACCTCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccgcgcctagtacctggataaatgaccataccggtttcctgtagGAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGACGACACCTCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGTgtgaggcagatctgagggtccacaccatgggtggggcttggtgtgcacat #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATC-ACC---GGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAGTCCTCATCCACCGGCG-CATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAGTCCTCATCCACCGGCGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATC---ACCGGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAGTCCTCATCCACCGGCGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATC-ACCGGC--ATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAGTCCTCATCCACCGGCGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCAT-CACCG--GCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAGTCCTCATCCACCGGCGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATC---ACCGGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAGTCCTCATCCACCGGCGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATC---ACCGGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAGTCCTCATCCACCGGCGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATC---ACCGGCATATCAGGGCTCAAG------------ acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAGTCCTCATCCACCGGCGCATATCAGGGCTCAAGGCAAGTCTTTCTgtgggaggagacccatgaacagagcgggctcccaggga #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTG-CAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCCAAAAGT-GGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAgcgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCCAAAAGTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAgcgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCCAAAAGTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCCAAAAGTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Pairagon ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCCAAAAGTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCCAAAAGTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCCAAAAGTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCCAAAAGTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCACAACTTT-ACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagaTACCCCAATGTCAATGTGCACAACTTTCACCACCAGTT-GAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcggtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagaTACCCCAATGTCAATGTGCACAACTTTCACCACCAGTTGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcggtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTCACCACCAGTTGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTCACCACCAGTTGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Pairagon ATACCCCAATGTCAATGTGCACAACTTT-ACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTCACCACCAGTT-GAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Exonerate_protein2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTCACCACCAGTTGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Exonerate_coding2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTCACCACCAGTTGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTCACCACCAGTTGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag #### Sptbn2_ID627_22 --> 0 - 0 Original Alignment ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAG-CAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCTGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCCGGGAGT-ACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from CESAR ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCTGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCCGGGAGTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from Spaln_aa2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCTGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCCGGGAGTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from Spaln_nt2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCTGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCCGGGAGTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from Pairagon ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCTGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCCGGGAGTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from Exonerate_protein2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCTGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCCGGGAGTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from Exonerate_coding2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCTGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCCGGGAGTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag Alignment from GeneWise ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccttttgcaagcctttcattgcccctgccccgggccccctcagACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTCTGGGGACAGCCGCAGCAGGTCCAGAGTTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGAGATGCTGCAGAGGCTGAGGCTTGGATGGGTGATCCGGGAGTACACATGATGGGCCAGGAAAAGGCCAAGgtaagcgtcagaggaatggctgctttgctgcccattctcttacccccaag #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCA-GCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagcACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCACGCCTCCC-TGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from CESAR cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagcACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCACGCCTCCCTGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Spaln_aa2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCACGCCTCCCTGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Spaln_nt2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCACGCCTCCCTGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Pairagon CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCACGCCTCCCTGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Exonerate_protein2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCACGCCTCCCTGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Exonerate_coding2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCACGCCTCCCTGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from GeneWise CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCACGCCTCCCTGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATT-GACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagaGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTCGACATGGGCC-GGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from CESAR gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagaGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTCGACATGGGCCGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTCGACATGGGCCGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTCGACATGGGCCGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Pairagon GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATT-GACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTCGACAT-GGGCCGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTCGACATGGGCCGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTCGACATGGGCCGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from GeneWise GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTCGACATGGGCCGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAG-CTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg gagaccatggtaaagctccattaatcatatgcctgtctgtctttccacagATCTCAGAGAAGCCTGTCTCAGC-ACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTggtgagtcacttggcaatgtcacaggagggaggggtcttgtgagggtgcac Alignment from CESAR ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg gagaccatggtaaagctccattaatcatatgcctgtctgtctttccacagATCTCAGAGAAGCCTGTCTCAGCACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTggtgagtcacttggcaatgtcacaggagggaggggtcttgtgagggtgcac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gagaccatggtaaagctccattaatcatatgcctgtctgtctttccacagATCTCAGAGAAGCCTGTCTCAGCACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTGgtgagtcacttggcaatgtcacaggagggaggggtcttgtgagggtgcac Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gagaccatggtaaagctccattaatcatatgcctgtctgtctttccacagATCTCAGAGAAGCCTGTCTCAGCACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTGgtgagtcacttggcaatgtcacaggagggaggggtcttgtgagggtgcac Alignment from Pairagon ATCTCAGAGAAG-CTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gagaccatggtaaagctccattaatcatatgcctgtctgtctttccacagATCTCAGAGAAGCCTGTCTCAGC-ACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTGgtgagtcacttggcaatgtcacaggagggaggggtcttgtgagggtgcac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gagaccatggtaaagctccattaatcatatgcctgtctgtctttccacagATCTCAGAGAAGCCTGTCTCAGCACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTGgtgagtcacttggcaatgtcacaggagggaggggtcttgtgagggtgcac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gagaccatggtaaagctccattaatcatatgcctgtctgtctttccacagATCTCAGAGAAGCCTGTCTCAGCACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTGgtgagtcacttggcaatgtcacaggagggaggggtcttgtgagggtgcac Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gagaccatggtaaagctccattaatcatatgcctgtctgtctttccacagATCTCAGAGAAGCCTGTCTCAGCACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTGgtgagtcacttggcaatgtcacaggagggaggggtcttgtgagggtgcac #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCA-TTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCACTTGGTGC-AAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCACTTGGTGCAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCACTTGGTGCAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCACTTGGTGCAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCA-TTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCACTTGGTGC-AAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCACTTGGTGCAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCACTTGGTGCAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCACTTGGTGCAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt #### Sptbn2_ID636_31 --> 1 - 0 Original Alignment gACTCAGTCAAAATTGCCACCATCC-ACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcaggACTCAGTCAAAATTGCCACCGTCGCACACAAG-ACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from CESAR gACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcaggACTCAGTCAAAATTGCCACCGTCGCACACAAGACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Spaln_aa2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAATTGCCACCGTCGCACACAAGACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Spaln_nt2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAATTGCCACCGTCGCACACAAGACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Pairagon GACTCAGTCAAAATTGCCACCATC-CACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAATTGCCACCGTCGCACACAAG-ACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Exonerate_protein2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAATTGCCACCGTCGCACACAAGACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Exonerate_coding2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAATTGCCACCGTCGCACACAAGACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from GeneWise GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAATTGCCACCGTCGCACACAAGACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGC-CGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCCGCAAACAAG-AATGGAAGCCTTCAACAAGAAAGCTGCCAACaggtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from CESAR GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCCGCAAACAAGAATGGAAGCCTTCAACAAGAAAGCTGCCAACaggtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCCGCAAACAAGAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCCGCAAACAAGAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Pairagon GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTG-CCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCCGCAAACAAGA-ATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCCGCAAACAAGAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCCGCAAACAAGAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCCGCAAACAAGAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg #### Sptbn2_ID639_34 --> 1 - 2 Original Alignment gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGG-AGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcaggTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGCAGCCTTG-CTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgggtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from CESAR gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcaggTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGCAGCCTTGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgggtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Spaln_aa2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGCAGCCTTGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Spaln_nt2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGCAGCCTTGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Pairagon GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGCAGCCTTGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Exonerate_protein2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGCAGCCTTGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Exonerate_coding2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGCAGCCTTGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from GeneWise GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGCAGCCTTGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg #### Sptbn2_ID640_35 --> 1 - 0 Original Alignment cTTACAGGATGGC-AAAGAATACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagcTTACAGGATGGTCAAGGAAT-CCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from CESAR cTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagcTTACAGGATGGTCAAGGAATCCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from Spaln_aa2Genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTCAAGGAATCCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from Spaln_nt2Genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTCAAGGAATCCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from Pairagon CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTCAAGGAATCCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from Exonerate_protein2genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTCAAGGAATCCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from Exonerate_coding2genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTCAAGGAATCCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from GeneWise CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTCAAGGAATCCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt #### Ssh3_ID446_10 --> 0 - 2 Original Alignment TTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTG-GAGGAACTTCAGAAAAACag TTCCCCCACCTCTACTTGgtaaggggcccccacttccactgccttcccagGGCTCTGAGTGGAATGCTGCCAACCTGCGAGG-ACTTCAGAAGAACaggtaagttttccagccttgggtctgccgcttcttctctcagcctctctgtg Alignment from CESAR TTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag TTCCCCCACCTCTACTTGgtaaggggcccccacttccactgccttcccagGGCTCTGAGTGGAATGCTGCCAACCTGCGAGGACTTCAGAAGAACaggtaagttttccagccttgggtctgccgcttcttctctcagcctctctgtg Alignment from Spaln_aa2Genome TTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTCCCCCACCTCTACTTGgtaaggggcccccacttccactgccttcccagGGCTCTGAGTGGAATGCTGCCAACCTGCGAGGACTTCAGAAGAACAGgtaagttttccagccttgggtctgccgcttcttctctcagcctctctgtg Alignment from Spaln_nt2Genome TTCCCCCACCTCTACTT--------------------------------GGGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTCCCCCACCTCTACTTGGTAAGGGGCCCCCACTTCCACTGCCTTCCCAGGGCTCTGAGTGGAATGCTGCCAACCTGCGAGGACTTCAGAAGAACAGgtaagttttccagccttgggtctgccgcttcttctctcagcctctctgtg Alignment from Pairagon TTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTCCCCCACCTCTACTTGgtaaggggcccccacttccactgccttcccagGGCTCTGAGTGGAATGCTGCCAACCTGCGAGGACTTCAGAAGAACAGgtaagttttccagccttgggtctgccgcttcttctctcagcctctctgtg Alignment from Exonerate_protein2genome TTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTCCCCCACCTCTACTTGgtaaggggcccccacttccactgccttcccagGGCTCTGAGTGGAATGCTGCCAACCTGCGAGGACTTCAGAAGAACAGgtaagttttccagccttgggtctgccgcttcttctctcagcctctctgtg Alignment from Exonerate_coding2genome TTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTCCCCCACCTCTACTTGgtaaggggcccccacttccactgccttcccagGGCTCTGAGTGGAATGCTGCCAACCTGCGAGGACTTCAGAAGAACAGgtaagttttccagccttgggtctgccgcttcttctctcagcctctctgtg Alignment from GeneWise TTCCCCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG TTCCCCCACCTCTACTTGgtaaggggcccccacttccactgccttcccagGGCTCTGAGTGGAATGCTGCCAACCTGCGAGGACTTCAGAAGAACAGgtaagttttccagccttgggtctgccgcttcttctctcagcctctctgtg #### Stambpl1_ID6902_9 --> 1 - 0 Original Alignment cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAG-AAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcccggatggtccttaactttgtgtagtagcatttacctcctcttagcACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGCAAGGGCT-CCATCCTCACACCAAGGACCCCAAGCTGTTCAGTgtaagtagacatcatggatgattgttattgtatattatcatcatcatcat Alignment from CESAR cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcccggatggtccttaactttgtgtagtagcatttacctcctcttagcACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGCAAGGGCTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGTgtaagtagacatcatggatgattgttattgtatattatcatcatcatcat Alignment from Spaln_aa2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcccggatggtccttaactttgtgtagtagcatttacctcctcttagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGCAAGGGCTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGTgtaagtagacatcatggatgattgttattgtatattatcatcatcatcat Alignment from Spaln_nt2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcccggatggtccttaactttgtgtagtagcatttacctcctcttagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGCAAGGGCTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGTgtaagtagacatcatggatgattgttattgtatattatcatcatcatcat Alignment from Pairagon CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcccggatggtccttaactttgtgtagtagcatttacctcctcttagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGCAAGGGCTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGTgtaagtagacatcatggatgattgttattgtatattatcatcatcatcat Alignment from Exonerate_protein2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcccggatggtccttaactttgtgtagtagcatttacctcctcttagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGCAAGGGCTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGTgtaagtagacatcatggatgattgttattgtatattatcatcatcatcat Alignment from Exonerate_coding2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcccggatggtccttaactttgtgtagtagcatttacctcctcttagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGCAAGGGCTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGTgtaagtagacatcatggatgattgttattgtatattatcatcatcatcat Alignment from GeneWise ---------------------GGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcccggatggtccttaactttgtgtagtagCATTTACCTCCTCTTAGCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGCAAGGGCTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGTgtaagtagacatcatggatgattgttattgtatattatcatcatcatcat #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTG-TACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagtcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGCTACCAAA-AGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagtcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGCTACCAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGCTACCAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGCTACCAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGCTACCAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGCTACCAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGCTACCAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGCTACCAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg #### Sufu_ID9897_5 --> 0 - 2 Original Alignment ATTGTTGGTGTC-TGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCCTGCACTG-GGAGTTACATTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCatgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from CESAR ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCCTGCACTGGGAGTTACATTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCatgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Spaln_aa2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCCTGCACTGGGAGTTACATTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Spaln_nt2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCCTGCACTGGGAGTTACATTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Pairagon ATTGTTGGTGT-CTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCCTGCACTG-GGAGTTACATTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Exonerate_protein2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCCTGCACTGGGAGTTACATTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Exonerate_coding2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCCTGCACTGGGAGTTACATTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from GeneWise ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCCTGCACTGGGAGTTACATTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAAC-ATCTCCTGGCTCTTCCACTGCCGCATCGTCt ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACCATCTCCT-GCTCTTCCACTGCCGCATTGTCtgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACCATCTCCTGCTCTTCCACTGCCGCATTGTCtgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACCATCTCCTGCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACCATCTCCTGCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from Pairagon ATGGAACGCAGCCCCAA-CATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACCATCTCCT-GCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACCATCTCCTGCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from Exonerate_coding2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACCATCTCCTGCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from GeneWise ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACCATCTCCTGCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCT-TCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTCTCTG-GCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTCTCTGGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTCTCTGGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTCTCTGGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTCTCTGGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTCTCTGGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTCTCTGGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTCTCTGGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag #### Syvn1_ID1391_10 --> 1 - 1 Original Alignment cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTC-CTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt gggcattggctcatggggacctgctgacatcttctatttttgtacttcagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGCCTGACATGCCGCATGGATGTCCCTGCGGGCAT-ATTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATtgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from CESAR cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt gggcattggctcatggggacctgctgacatcttctatttttgtacttcagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGCCTGACATGCCGCATGGATGTCCCTGCGGGCATATTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATtgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from Spaln_aa2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGCCTGACATGCCGCATGGATGTCCCTGCGGGCATATTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from Spaln_nt2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGCCTGACATGCCGCATGGATGTCCCTGCGGGCATATTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from Pairagon CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGT-CCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGCCTGACATGCCGCATGGATGTCCCTGCGGGCAT-ATTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from Exonerate_protein2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGCCTGACATGCCGCATGGATGTCCCTGCGGGCATATTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from Exonerate_coding2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGT-CCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGCCTGACATGCCGCATGGATGTCCCTGCGGGCATA-TTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc Alignment from GeneWise CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT gggcattggctcatggggacctgctgacatcttctatttttgtacttcagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGCCTGACATGCCGCATGGATGTCCCTGCGGGCATATTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCCGACCAAGGACCACCCCCTGCACCTCATCCCCAACCACTGCTGCCACAGCCCCCTAATTgtgaggggcacttcatttgcccacagagtaccttttttgtcctcaggtgc #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCT-GGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg tggcagttggatctggagaccaggagatcctctctgctgctcccctttagctGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTCGGCACCA-TCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCGCCTTTTggtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg tggcagttggatctggagaccaggagatcctctctgctgctcccctttagctGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTCGGCACCATCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCGCCTTTTggtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTCGGCACCATCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTCGGCACCATCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCT-GGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTCGGCACCA-TCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTCGGCACCATCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTCGGCACCATCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG tggcagttggatctggagaccaggagatcctctctgctgctcccctttagCTGTTTCTCGGCCTAGTGGAGCAGCGACCACCACAGCTGCTCGGCACCATCCTTCTGCCCCGGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCGCCTTTTGgtgagttggccattctcttggatctggggtggaaagctgaggctcaggta #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACT-GCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcaggCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTCGCGTCTA-TGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcaggCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTCGCGTCTATGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTCGCGTCTATGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTCGCGTCTATGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACT-GCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTCGCGTCTAT-GTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTCGCGTCTATGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTCGCGTCTATGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTCGCGTCTATGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTC-CCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCCTGGCTACT-TGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCCTGGCTACTTGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCCTGGCTACTTGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCCTGGCTACTTGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCT-CCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCCTGGCTACT-TGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCCTGGCTACTTGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCCTGGCTACTTGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCCTGGCTACTTGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATT-GGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTCGGCAGAGACT-GCACCGTCAGTTTCCTCTGCACGAGATGTTTGTGTCACCTCAGGGACACgggtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from CESAR GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTCGGCAGAGACTGCACCGTCAGTTTCCTCTGCACGAGATGTTTGTGTCACCTCAGGGACACgggtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Spaln_aa2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTCGGCAGAGACTGCACCGTCAGTTTCCTCTGCACGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Spaln_nt2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTCGGCAGAGACTGCACCGTCAGTTTCCTCTGCACGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Pairagon GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATT-GGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTCGGCAGAGAC-TGCACCGTCAGTTTCCTCTGCACGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Exonerate_protein2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTCGGCAGAGACTGCACCGTCAGTTTCCTCTGCACGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Exonerate_coding2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTCGGCAGAGACTGCACCGTCAGTTTCCTCTGCACGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from GeneWise GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTCGGCAGAGACTGCACCGTCAGTTTCCTCTGCACGAGATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGT-GGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTCGGGGCCCGGA-GTGTCAGAAGAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTCGGGGCCCGGAGTGTCAGAAGAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTCGGGGCCCGGAGTGTCAGAAGAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTCGGGGCCCGGAGTGTCAGAAGAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGT-GGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTCGGGGCCCGGA-GTGTCAGAAGAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTCGGGGCCCGGAGTGTCAGAAGAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTCGGGGCCCGGAGTGTCAGAAGAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaaaccctgataaaaaaaatcatgaatcctagGTAAAGATACAGTGCCGCAAGGGCATTCCCTCAGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTCGGGGCCCGGAGTGTCAGAAGAACAACCCTGGCACATATCAGgtaaagaagttggcaggatcttttcaaccctttctgagagctccttgcca #### Tbx10_ID258_3 --> 1 - 2 Original Alignment gAGGATGTTCCCAACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTC-ATG------GACTTTATCCCGTTGGATGACAAGAGATACag caggggctagggggaggggcagagccagtctaatatctgcatttttgcaggAGGATGTTCCCAACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCCATGGTGATGG-CTTTATACCATTGGATGACAAGAGATACaggtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from CESAR gAGGATGTTCCCAACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTCATG------GACTTTATCCCGTTGGATGACAAGAGATACag caggggctagggggaggggcagagccagtctaatatctgcatttttgcaggAGGATGTTCCCAACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCCATGGTGATGGCTTTATACCATTGGATGACAAGAGATACaggtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from Spaln_aa2Genome GAGGATGTTCCCAACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTCATG------GACTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCAACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCCATGGTGATGGCTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from Spaln_nt2Genome GAGGATGTTCCCAACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTC-ATGGA-----CTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCAACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCCATGGTGATGGCTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from Pairagon GAGGATGTTCCCAACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTC-------ATGGACTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCAACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCCATGGTGATGG-CTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from Exonerate_protein2genome GAGGATGTTCCCAACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTCATG------GACTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCAACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCCATGGTGATGGCTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from Exonerate_coding2genome GAGGATGTTCCCAACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTCATG------GACTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCAACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCCATGGTGATGGCTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from GeneWise GAGGATGTTCCCAACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTCATGGAC------TTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCAACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCCATGGTGATGGCTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta #### Tbx10_ID261_6 --> 0 - 2 Original Alignment ATCACGCAGCTGAAAATTGCTAGCAACCCCTTTGCCAAAGGTTTC-AGAGAGGCTGACCCAGACTCAtg ctaagtgtgggctctggagcccaatctatataatgttccttcttttctagATCACGCAGCTGAAAATTGCTAGCAACCCATTTGCCAAAGGTTTCCAGAG-GGCTGACCCAGACTCAtggtaagttctaactcctgccttcttgctctacatccagctgtgccttcccc Alignment from CESAR ATCACGCAGCTGAAAATTGCTAGCAACCCCTTTGCCAAAGGTTTCAGAGAGGCTGACCCAGACTCAtg ctaagtgtgggctctggagcccaatctatataatgttccttcttttctagATCACGCAGCTGAAAATTGCTAGCAACCCATTTGCCAAAGGTTTCCAGAGGGCTGACCCAGACTCAtggtaagttctaactcctgccttcttgctctacatccagctgtgccttcccc Alignment from Spaln_aa2Genome ATCACGCAGCTGAAAATTGCTAGCAACCCCTTTGCCAAAGGTTTCAGAGAGGCTGACCCAGACTCATG ctaagtgtgggctctggagcccaatctatataatgttccttcttttctagATCACGCAGCTGAAAATTGCTAGCAACCCATTTGCCAAAGGTTTCCAGAGGGCTGACCCAGACTCATGgtaagttctaactcctgccttcttgctctacatccagctgtgccttcccc Alignment from Spaln_nt2Genome ATCACGCAGCTGAAAATTGCTAGCAACCCCTTTGCCAAAGGTTTCAGAGAGGCTGACCCAGACTCATG ctaagtgtgggctctggagcccaatctatataatgttccttcttttctagATCACGCAGCTGAAAATTGCTAGCAACCCATTTGCCAAAGGTTTCCAGAGGGCTGACCCAGACTCATGgtaagttctaactcctgccttcttgctctacatccagctgtgccttcccc Alignment from Pairagon ATCACGCAGCTGAAAATTGCTAGCAACCCCTTTGCCAAAGGTTTCAGAGAGGCTGACCCAGACTCATG ctaagtgtgggctctggagcccaatctatataatgttccttcttttctagATCACGCAGCTGAAAATTGCTAGCAACCCATTTGCCAAAGGTTTCCAGAGGGCTGACCCAGACTCATGgtaagttctaactcctgccttcttgctctacatccagctgtgccttcccc Alignment from Exonerate_protein2genome ATCACGCAGCTGAAAATTGCTAGCAACCCCTTTGCCAAAGGTTTCAGAGAGGCTGACCCAGACTCATG ctaagtgtgggctctggagcccaatctatataatgttccttcttttctagATCACGCAGCTGAAAATTGCTAGCAACCCATTTGCCAAAGGTTTCCAGAGGGCTGACCCAGACTCATGgtaagttctaactcctgccttcttgctctacatccagctgtgccttcccc Alignment from Exonerate_coding2genome ATCACGCAGCTGAAAATTGCTAGCAACCCCTTTGCCAAAGGTTTCAGAGAGGCTGACCCAGACTCATG ctaagtgtgggctctggagcccaatctatataatgttccttcttttctagATCACGCAGCTGAAAATTGCTAGCAACCCATTTGCCAAAGGTTTCCAGAGGGCTGACCCAGACTCATGgtaagttctaactcctgccttcttgctctacatccagctgtgccttcccc Alignment from GeneWise ATCACGCAGCTGAAAATTGCTAGCAACCCCTTTGCCAAAGGTTTCAGAGAGGCTGACCCAGACTCATG ctaagtgtgggctctggagcccaatctatataatgttccttcttttctagATCACGCAGCTGAAAATTGCTAGCAACCCATTTGCCAAAGGTTTCCAGAGGGCTGACCCAGACTCATGgtaagttctaactcctgccttcttgctctacatccagctgtgccttcccc #### Tbx10_ID262_7 --> 1 - 1 Original Alignment gCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGT-CCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAg tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccaggCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCCTGCC-CCTTAAGGGCTCTGCCGAACGAGAGAAAggtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from CESAR gCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAg tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccaggCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCCTGCCCCTTAAGGGCTCTGCCGAACGAGAGAAAggtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Spaln_aa2Genome GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCCTGCCCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Spaln_nt2Genome GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCCTGCCCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Pairagon GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCCTGCCCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Exonerate_protein2genome GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCCTGCCCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Exonerate_coding2genome GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCCTGCCCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from GeneWise GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCCTGCCCCTTAAGGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATG-GGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagagCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGCGGCCGAG-GATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATtggtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagagCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGCGGCCGAGGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATtggtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGCGGCCGAGGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGCGGCCGAGGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATG-GGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGCGGCCGAG-GATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGCGGCCGAGGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGCGGCCGAGGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGCGGCCGAGGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTG-CTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCCTGC-CCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCCTGCCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCCTGCCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCCTGCCCAGCACCGACACAGAAGAAACACTCAGAGAAG---AGCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCCTGCCCAGCACCGACACAGAAGAAACACTCAGAGAAG---AGCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCCTGCCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCCTGCCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCCTGCCCAGCACCGACACAGAAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCC-GTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCCGTCTACA-TGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGatgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCCGTCTACATGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGatgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCCGTCTACATGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCCGTCTACATGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCT-CCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCCGTCTACA-TGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATGTACTTCCTATAACCCTTCCTATGCAGCCAGGGCACCTGGCCAACTGTGC Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCCGTCTACATGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCCGTCTACATGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCCGTCTACATGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc #### Tcirg1_ID180_7 --> 1 - 0 Original Alignment cTTCCACTGTCATGTC-TTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagcTTCCACTGTCATGTCCTTCTCAT-CCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from CESAR cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagcTTCCACTGTCATGTCCTTCTCATCCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from Spaln_aa2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCCTTCTCATCCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from Spaln_nt2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCCTTCTCATCCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from Pairagon CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCCTTCTCATCCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from Exonerate_protein2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCCTTCTCATCCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from Exonerate_coding2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCCTTCTCATCCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg Alignment from GeneWise CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA gctctacctcgtgactccgacttagcccaacccagctccgtgctttgtagCTTCCACTGTCATGTCCTTCTCATCCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAgtgagagcccatgtgacctgaaccctaatagctccctcaaggcttccttg #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTAC-TGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACCTGGGGTG-GCAGATCGGACAGAAGATCCGAAAGATCACAGACtggtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from CESAR CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACGgtaattttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACCTGGGGTGGCAGATCGGACAGAAGATCCGAAAGATCACAGACtggtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from Spaln_aa2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACCTGGGGTGGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from Spaln_nt2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACCTGGGGTGGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from Pairagon CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTA-CTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACCTGGGGTG-GCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from Exonerate_protein2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACCTGGGGTGGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from Exonerate_coding2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACCTGGGGTGGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from GeneWise CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACCTGGGGTGGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCA-CATTCAGACCTGAAGGTCaa tcaagatatacatgccatggctagggcatgttctggggatttgcttctagGTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACCATT-TGACCTGAAGGTCaagtaagatggggcagtttgtctttgctggacagcccttaggcactggctaa Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa tcaagatatacatgccatggctagggcatgttctggggatttgcttctagGTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACCATTTGACCTGAAGGTCaagtaagatggggcagtttgtctttgctggacagcccttaggcactggctaa Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA tcaagatatacatgccatggctagggcatgttctggggatttgcttctagGTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACCATTTGACCTGAAGGTCAAgtaagatggggcagtttgtctttgctggacagcccttaggcactggctaa Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA tcaagatatacatgccatggctagggcatgttctggggatttgcttctagGTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACCATTTGACCTGAAGGTCAAgtaagatggggcagtttgtctttgctggacagcccttaggcactggctaa Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA tcaagatatacatgccatggctagggcatgttctggggatttgcttctagGTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACCATTTGACCTGAAGGTCAAgtaagatggggcagtttgtctttgctggacagcccttaggcactggctaa Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA tcaagatatacatgccatggctagggcatgttctggggatttgcttctagGTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACCATTTGACCTGAAGGTCAAgtaagatggggcagtttgtctttgctggacagcccttaggcactggctaa Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA tcaagatatacatgccatggctagggcatgttctggggatttgcttctagGTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACCATTTGACCTGAAGGTCAAgtaagatggggcagtttgtctttgctggacagcccttaggcactggctaa Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA tcaagatatacatgccatggctagggcatgttctggggatttgcttctagGTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACCATTTGACCTGAAGGTCAAgtaagatggggcagtttgtctttgctggacagcccttaggcactggctaa #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTG-CACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagccTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGC-GCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagccTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTG-CACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGC-GCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGCGCCTTCCAG-AGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGCAGACGCT-TGTGGTAGATGTCCGGCGCTGTGAGGAACTGGAGAAGACGTTTagtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGCAGACGCTTGTGGTAGATGTCCGGCGCTGTGAGGAACTGGAGAAGACGTTTagtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGCAGACGCTTGTGGTAGATGTCCGGCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGCAGACGCTTGTGGTAGATGTCCGGCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Pairagon CTCAACGAATCCGTGAGCGCCTTCCAG-AGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGCAGACGCTT-GTGGTAGATGTCCGGCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGCAGACGCTTGTGGTAGATGTCCGGCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGCAGACGCTTGTGGTAGATGTCCGGCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGCAGACGCTTGTGGTAGATGTCCGGCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCG-GTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGCGTGGGAGCTG-GGGACTTTGTGCGGAGAGCAACCCTGCAggtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGCGTGGGAGCTGGGGACTTTGTGCGGAGAGCAACCCTGCAggtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGCGTGGGAGCTGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGCGTGGGAGCTGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCG-GTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGCGTGGGAGCT-GGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGCGTGGGAGCTGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGCGTGGGAGCTGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ccttggttgttgaatccagcctcacagcattttaccgttttcacccacagGCCGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGCGTGGGAGCTGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtgagtccggtgcaggagtgcactggcctttggctttctcttggaattag #### Tctn3_ID7999_2 --> 2 - 2 Original Alignment ctTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGC-TGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAag caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagctTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCCTGCT-TGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAaggtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from CESAR ctTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAag caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagctTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCCTGCTTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAaggtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from Spaln_aa2Genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCCTGCTTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from Spaln_nt2Genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCCTGCTTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from Pairagon CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCCTGCTTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from Exonerate_protein2genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCCTGCTTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from Exonerate_coding2genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCCTGCTTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from GeneWise CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCCTGCTTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc #### Tdrd1_ID12222_23 --> 2 - 0 Original Alignment agATACCACACAGCAGAGACTGCTGTTGC-ACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagagATACCACACAGCAGAGACTGCTGTTGCCACAG-ATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from CESAR agATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagagATACCACACAGCAGAGACTGCTGTTGCCACAGATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from Spaln_aa2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCTGTTGCCACAGATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from Spaln_nt2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCTGTTGCCACAGATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from Pairagon AGATACCACACAGCAGAGACTGCTGTTG-CACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCTGTTGCCACAGA-TTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from Exonerate_protein2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCTGTTGCCACAGATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from Exonerate_coding2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCTGTTGCCACAGATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from GeneWise AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCTGTTGCCACAGATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata #### Tex40_ID1868_4 --> 0 - 1 Original Alignment CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTG-GATATTCTCAAAAAAGCCCTCATCa accacttcagctttccataggactggttatgtcttctcttttcttaccagCTGCCTCTCCCCCTGATGGAGTTCATGGAGACTGAAGTTTTGCGATATTC-CAAAAAAGCCCTCATCagtataaactccaccctaccccaaccctagcttccacaaaagatcctgtgg Alignment from CESAR CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa accacttcagctttccataggactggttatgtcttctcttttcttaccagCTGCCTCTCCCCCTGATGGAGTTCATGGAGACTGAAGTTTTGCGATATTCCAAAAAAGCCCTCATCagtataaactccaccctaccccaaccctagcttccacaaaagatcctgtgg Alignment from Spaln_aa2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctttccataggactggttatgtcttctcttttcttaccagCTGCCTCTCCCCCTGATGGAGTTCATGGAGACTGAAGTTTTGCGATATTCCAAAAAAGCCCTCATCAgtataaactccaccctaccccaaccctagcttccacaaaagatcctgtgg Alignment from Spaln_nt2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctttccataggactggttatgtcttctcttttcttaccagCTGCCTCTCCCCCTGATGGAGTTCATGGAGACTGAAGTTTTGCGATATTCCAAAAAAGCCCTCATCAgtataaactccaccctaccccaaccctagcttccacaaaagatcctgtgg Alignment from Pairagon CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTG-GATATTCTCAAAAAAGCCCTCATCA accacttcagctttccataggactggttatgtcttctcttttcttaccagCTGCCTCTCCCCCTGATGGAGTTCATGGAGACTGAAGTTTTGCGATATTC-CAAAAAAGCCCTCATCAgtataaactccaccctaccccaaccctagcttccacaaaagatcctgtgg Alignment from Exonerate_protein2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctttccataggactggttatgtcttctcttttcttaccagCTGCCTCTCCCCCTGATGGAGTTCATGGAGACTGAAGTTTTGCGATATTCCAAAAAAGCCCTCATCAgtataaactccaccctaccccaaccctagcttccacaaaagatcctgtgg Alignment from Exonerate_coding2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctttccataggactggttatgtcttctcttttcttaccagCTGCCTCTCCCCCTGATGGAGTTCATGGAGACTGAAGTTTTGCGATATTCCAAAAAAGCCCTCATCAgtataaactccaccctaccccaaccctagcttccacaaaagatcctgtgg Alignment from GeneWise CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctttccataggactggttatgtcttctcttttcttaccagCTGCCTCTCCCCCTGATGGAGTTCATGGAGACTGAAGTTTTGCGATATTCCAAAAAAGCCCTCATCAgtataaactccaccctaccccaaccctagcttccacaaaagatcctgtgg #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAAC-TACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccaggtCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACCTACC-GGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTggtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccaggtCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACCTACCGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTggtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACCTACCGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACCTACCGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACCTACCGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACCTACCGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACCTACCGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACCTACCGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACA-GCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccaggcTTCCAGGCCCTGGTGCTAACACGCCC-GTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAggtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccaggcTTCCAGGCCCTGGTGCTAACACGCCCGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAggtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACACGCCCGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACACGCCCGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACACGCCCGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACACGCCCGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACACGCCCGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACACGCCCGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCAAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTG-GAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttaggcGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGT-GAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttaggcGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTG-GAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGT-GAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGCGAGGAGCTGTGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTC-CTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagaGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCCTAA-CTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTaggtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagaGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCCTAACTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTaggtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCCTAACTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCCTAACTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCCTAACTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCCTAACTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCCTAACTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacctcggctaacggatttttatttttacaattagAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCCTAACTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGgtatggggtgagggagggaagcctaacacggactgtccttctgtggggga #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGT-GTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTCGTCGCCGCAC-CAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACaggtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGT-GTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTCGTCGCCGCA-CCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACaggtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTCGTCGCCGCACCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTCGTCGCCGCACCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCAT---AGATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGT-GTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTCGTCGCCGCAC-CAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCAT---AGATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTCGTCGCCGCACCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTCGTCGCCGCACCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTCGTCGCCGCACCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct #### Tmem180_ID9861_3 --> 1 - 2 Original Alignment gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCC-TTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacaggTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCCTTGTCAG-CTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgggtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from CESAR gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacaggTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCCTTGTCAGCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgggtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Spaln_aa2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCCTTGTCAGCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Spaln_nt2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCCTTGTCAGCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Pairagon GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCT-CCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCCTTGTCAG-CTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Exonerate_protein2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCCTTGTCAGCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Exonerate_coding2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCCTTGTCAGCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from GeneWise GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCCTTGTCAGCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc #### Trmt112_ID1862_3 --> 0 - 0 Original Alignment TTAAACTTGGCCGAG-GTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGCGTGCCCA-AGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from CESAR TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGCGTGCCCAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from Spaln_aa2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGCGTGCCCAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from Spaln_nt2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGCGTGCCCAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from Pairagon TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGCGTGCCCAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from Exonerate_protein2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGCGTGCCCAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from Exonerate_coding2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGCGTGCCCAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from GeneWise TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAGGTT----------------------------------------------- aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGCGTGCCCAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGGTCGGTATCCTGGGGCATTGCCTGCCCAGGCCTCCCATGGTTACCAGTGC #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACA-TTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACACTTCTGGA-GCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCggtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACACTTCTGGAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCggtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACACTTCTGGAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACACTTCTGGAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCC---AGACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACACTTCTGGAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCC---AGACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACACTTCTGGAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACACTTCTGGAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACACTTCTGGAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc #### Trpt1_ID1983_6 --> 2 - 1 Original Alignment atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAA-GGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc atggaagggcactatcatgtggtcacattctattttctttatggctctagatGGAATCCCTTTCTTCTGCTTCGCCAATGGGGTGATTCTGACTCCAGGGAATGCTGAACGGCTTCCTGC-TCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACAcgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from CESAR atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc atggaagggcactatcatgtggtcacattctattttctttatggctctagatGGAATCCCTTTCTTCTGCTTCGCCAATGGGGTGATTCTGACTCCAGGGAATGCTGAACGGCTTCCTGCTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACAcgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from Spaln_aa2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGGTGATTCTGACTCCAGGGAATGCTGAACGGCTTCCTGCTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from Spaln_nt2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGGTGATTCTGACTCCAGGGAATGCTGAACGGCTTCCTGCTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from Pairagon ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAA-GGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGGTGATTCTGACTCCAGGGAATGCTGAACGGCTTCCTGC-TCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from Exonerate_protein2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGGTGATTCTGACTCCAGGGAATGCTGAACGGCTTCCTGCTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from Exonerate_coding2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGGTGATTCTGACTCCAGGGAATGCTGAACGGCTTCCTGCTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from GeneWise ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGGTGATTCTGACTCCAGGGAATGCTGAACGGCTTCCTGCTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc #### Tut1_ID2554_7 --> 2 - 1 Original Alignment gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTG-TTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg ccgggcttgtaaatactacttcccaactgactcttcttcattttctgcaggaGGTGGCCCCCTTCTCAATAACTATGCCTTGACGTTGCTTGGTGA-CTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAggtaattcagaatggcctctactgtcatgaccacagcttcatcttacccct Alignment from CESAR gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg ccgggcttgtaaatactacttcccaactgactcttcttcattttctgcaggaGGTGGCCCCCTTCTCAATAACTATGCCTTGACGTTGCTTGGTGACTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAggtaattcagaatggcctctactgtcatgaccacagcttcatcttacccct Alignment from Spaln_aa2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccgggcttgtaaatactacttcccaactgactcttcttcattttctgcagGAGGTGGCCCCCTTCTCAATAACTATGCCTTGACGTTGCTTGGTGACTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtaattcagaatggcctctactgtcatgaccacagcttcatcttacccct Alignment from Spaln_nt2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccgggcttgtaaatactacttcccaactgactcttcttcattttctgcagGAGGTGGCCCCCTTCTCAATAACTATGCCTTGACGTTGCTTGGTGACTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtaattcagaatggcctctactgtcatgaccacagcttcatcttacccct Alignment from Pairagon GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTG-TTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccgggcttgtaaatactacttcccaactgactcttcttcattttctgcagGAGGTGGCCCCCTTCTCAATAACTATGCCTTGACGTTGCTTGGTGA-CTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtaattcagaatggcctctactgtcatgaccacagcttcatcttacccct Alignment from Exonerate_protein2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccgggcttgtaaatactacttcccaactgactcttcttcattttctgcagGAGGTGGCCCCCTTCTCAATAACTATGCCTTGACGTTGCTTGGTGACTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtaattcagaatggcctctactgtcatgaccacagcttcatcttacccct Alignment from Exonerate_coding2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccgggcttgtaaatactacttcccaactgactcttcttcattttctgcagGAGGTGGCCCCCTTCTCAATAACTATGCCTTGACGTTGCTTGGTGACTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtaattcagaatggcctctactgtcatgaccacagcttcatcttacccct Alignment from GeneWise GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccgggcttgtaaatactacttcccaactgactcttcttcattttctgcagGAGGTGGCCCCCTTCTCAATAACTATGCCTTGACGTTGCTTGGTGACTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTAACCCAGAGAGCAGgtaattcagaatggcctctactgtcatgaccacagcttcatcttacccct #### Tut1_ID2555_8 --> 2 - 1 Original Alignment gtGAAGGGGAACAGGTAGAAGTT-GATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCa gactctggggtaattggctcttggctgactccttccctcttgctttgcaggtGAAGGGGAACAGGTAGAAGTTCGATGGTT-GGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCagtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from CESAR gtGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCa gactctggggtaattggctcttggctgactccttccctcttgctttgcaggtGAAGGGGAACAGGTAGAAGTTCGATGGTTGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCagtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from Spaln_aa2Genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTCGATGGTTGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from Spaln_nt2Genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTCGATGGTTGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from Pairagon GTGAAGGGGAACAGGTAGAAGTT-GATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTCGATGGTT-GGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from Exonerate_protein2genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTCGATGGTTGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from Exonerate_coding2genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTCGATGGTTGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from GeneWise GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTCGATGGTTGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCCCTCACAGGG-AACCAGGGCATCGAGGCTGCGATGGATtg tgactgcccccatggcttgcaggcactacttttctttgaatttttttaaggGAGAAGGCTCTGGCCCTCACAGGGCAACC-GGGCATCGAGGCTGCGATGGCTtggtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from CESAR gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg tgactgcccccatggcttgcaggcactacttttctttgaatttttttaaggGAGAAGGCTCTGGCCCTCACAGGGCAACCGGGCATCGAGGCTGCGATGGCTtggtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from Spaln_aa2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGCAACCGGGCATCGAGGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGCAACCGGGCATCGAGGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from Pairagon GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGCAACCGGGCATCGAGGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGCAACCGGGCATCGAGGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from Exonerate_coding2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGCAACCGGGCATCGAGGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from GeneWise GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGCAACCGGGCATCGAGGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCC-GATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcaggCTGATGGAGCATGAAGACGACCCTCGATGTGG-TGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAggtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcaggCTGATGGAGCATGAAGACGACCCTCGATGTGGTGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAggtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTCGATGTGGTGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTCGATGTGGTGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from Pairagon GCTGATGGAGCATGAAGACGACCC-CGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTCGATGTGG-TGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTCGATGTGGTGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTCGATGTGGTGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ctgctgggcaaggtggcctccaggataagcccgatctcctgcccctgcagGCTGATGGAGCATGAAGACGACCCTCGATGTGGTGAGCCTCTGGAGACTCCCCTCAGTCATGTCTTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGgtaagaactgggagacatcttgattctagagaccttaaaagggccctgag #### Unc93b1_ID211_2 --> 0 - 1 Original Alignment TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGC-CTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCCTTGGAGTGG-TAAGAATGTGCTGGCAGCCAGCACGGGTGTCACCCTTACTTATGGCATCTACCTGggtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from CESAR TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCCTTGGAGTGGTAAGAATGTGCTGGCAGCCAGCACGGGTGTCACCCTTACTTATGGCATCTACCTGggtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from Spaln_aa2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCCTTGGAGTGGTAAGAATGTGCTGGCAGCCAGCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from Spaln_nt2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCCTTGGAGTGGTAAGAATGTGCTGGCAGCCAGCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from Pairagon TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCG-CCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCCTTGGAGTGGT-AAGAATGTGCTGGCAGCCAGCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from Exonerate_protein2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCCTTGGAGTGGTAAGAATGTGCTGGCAGCCAGCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from Exonerate_coding2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCCTTGGAGTGGTAAGAATGTGCTGGCAGCCAGCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from GeneWise TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCCTTGGAGTGGTAAGAATGTGCTGGCAGCCAGCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAG-CAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcaggATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCCAGCGCCCAC-ACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcaggATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCCAGCGCCCACACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCCAGCGCCCACACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCCAGCGCCCACACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCatgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAG-CAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCCAGCGCCCA-CACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCCAGCGCCCACACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCCAGCGCCCACACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCCAGCGCCCACACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTGCCCATG-ATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGCATTTACTTCC-CAACAACTATCTGTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTggtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGCATTTACTTCCCAACAACTATCTGTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTggtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGCATTTACTTCCCAACAACTATCTGTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGCATTTACTTCCCAACAACTATCTGTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCCCATG-ATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGCATTTACTTCC-CAACAACTATCTGTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGCATTTACTTCCCAACAACTATCTGTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGCATTTACTTCCCAACAACTATCTGTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGCATTTACTTCCCAACAACTATCTGTATGACTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg #### Vegfb_ID1955_5 --> 1 - 2 Original Alignment aCCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACag acgagtgtaagaggtttgggtttctttattatcccttttccctcccgcagaCCTAAAAAAAAGGAGCACAG-TGTGAAGCCAGACcggtaagcttttgggattctcggtgctggtccaggagagagagctcatttgg Alignment from CESAR aCCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACag acgagtgtaagaggtttgggtttctttattatcccttttccctcccgcagaCCTAAAAAAAAGGAGCACAGTGTGAAGCCAGACcggtaagcttttgggattctcggtgctggtccaggagagagagctcatttgg Alignment from Spaln_aa2Genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG acgagtgtaagaggtttgggtttctttattatcccttttccctcccgcagACCTAAAAAAAAGGAGCACAGTGTGAAGCCAGACCGgtaagcttttgggattctcggtgctggtccaggagagagagctcatttgg Alignment from Spaln_nt2Genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG acgagtgtaagaggtttgggtttctttattatcccttttccctcccgcagACCTAAAAAAAAGGAGCACAGTGTGAAGCCAGACCGgtaagcttttgggattctcggtgctggtccaggagagagagctcatttgg Alignment from Pairagon ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG acgagtgtaagaggtttgggtttctttattatcccttttccctcccgcagACCTAAAAAAAAGGAGCACAGTGTGAAGCCAGACCGgtaagcttttgggattctcggtgctggtccaggagagagagctcatttgg Alignment from Exonerate_protein2genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG acgagtgtaagaggtttgggtttctttattatcccttttccctcccgcagACCTAAAAAAAAGGAGCACAGTGTGAAGCCAGACCGgtaagcttttgggattctcggtgctggtccaggagagagagctcatttgg Alignment from Exonerate_coding2genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG acgagtgtaagaggtttgggtttctttattatcccttttccctcccgcagACCTAAAAAAAAGGAGCACAGTGTGAAGCCAGACCGgtaagcttttgggattctcggtgctggtccaggagagagagctcatttgg Alignment from GeneWise ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG acgagtgtaagaggtttgggtttctttattatcccttttccctcccgcagACCTAAAAAAAAGGAGCACAGTGTGAAGCCAGACCGgtaagcttttgggattctcggtgctggtccaggagagagagctcatttgg #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCC-CTGGAAGAACACAGCCAATGTGAATGCag ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAG-ACACAGCCAATGTGAATGCaggtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from CESAR ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCaggtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from Pairagon ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCCTGGAAGACACAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTG-GTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGCGCACCAC-GAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGCGCACCACGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGCGCACCACGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGCGCACCACGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGCGCACCACGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGCGCACCACGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGCGCACCACGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGCGCACCACGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg #### Vegfb_ID1958_2 --> 0 - 1 Original Alignment GCCCCTGTGTCCCAGTTT-GATGGCCCCAGCCACCAGAAGAAAg gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTCGATG-CCCCAGCCACCAGAAGAAAggtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from CESAR GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAg gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTCGATGCCCCAGCCACCAGAAGAAAggtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from Spaln_aa2Genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTCGATGCCCCAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from Spaln_nt2Genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTCGATGCCCCAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from Pairagon GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTCGATGCCCCAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from Exonerate_protein2genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTCGATGCCCCAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from Exonerate_coding2genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTCGATGCCCCAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from GeneWise GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTCGATGCCCCAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat #### Vldlr_ID5807_6 --> 2 - 1 Original Alignment ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGG-CAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg cagaagccatttggctgccttcattccagcccctttatctgtacttccagctTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACCAATGTA-TGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACagtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from CESAR ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg cagaagccatttggctgccttcattccagcccctttatctgtacttccagctTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACCAATGTATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACagtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from Spaln_aa2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACCAATGTATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from Spaln_nt2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACCAATGTATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from Pairagon CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACCAATGTATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from Exonerate_protein2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACCAATGTATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from Exonerate_coding2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACCAATGTATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from GeneWise CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACCAATGTATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGAT-CTTGCCACTGGCGTGTGCAAGGCAGTAg catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagatATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCCTTGCCACTG-CGTGTGCAAGGCAGTAggtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagatATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCCTTGCCACTGCGTGTGCAAGGCAGTAggtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCCTTGCCACTGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCCTTGCCACTGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGAT-CTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCCTTGCCACT-GCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCCTTGCCACTGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCCTTGCCACTGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG catctagtggggcataggaagaacaaaaaaacgtttgttctgtctttcagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGATCCTTGCCACTGCGTGTGCAAGGCAGTAGgtatgtagacttgggctggcgttgctctggtacctttttgagttagtgat #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTCGTGGAGGGAA-GGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTCGTGGAGGGAAGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTCGTGGAGGGAAGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTCGTGGAGGGAAGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTCGTGGAGGGAA-GGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTCGTGGAGGGAAGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTCGTGGAGGGAAGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTCGTGGAGGGAAGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg catttctaaaactttccttgtgttgttagaggatatttgtattgttatagctTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGGCACGAATTAT-TTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAggtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg catttctaaaactttccttgtgttgttagaggatatttgtattgttatagctTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGGCACGAATTATTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAggtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGGCACGAATTATTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGGCACGAATTATTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGGCACGAATTAT-TTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGGCACGAATTATTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGGCACGAATTATTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATGAAGATATTATTACCTTGCAGCTTTTGGCACGAATTATTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca #### Vps13a_ID4114_9 --> 0 - 0 Original Alignment CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTT-TATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTCTATCTGA-TGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from CESAR CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTCTATCTGATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from Spaln_aa2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTCTATCTGATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from Spaln_nt2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTCTATCTGATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from Pairagon CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTT-TATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTCTATCTG-ATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from Exonerate_protein2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTCTATCTGATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from Exonerate_coding2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTCTATCTGATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from GeneWise CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTCTATCTGATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGTGGGAGTGGC-ATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg agcctgtgcattgccagggcttgctcctcgtgggcctgtttgctttgcagccCTCTGCTCCTTTGGCTGTGGGAGTGGCCATCTGCA-CACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAggtatgtgtgatggaaaagggcagatgggggtcaccaaaataatatgaaga Alignment from CESAR ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg agcctgtgcattgccagggcttgctcctcgtgggcctgtttgctttgcagccCTCTGCTCCTTTGGCTGTGGGAGTGGCCATCTGCACACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAggtatgtgtgatggaaaagggcagatgggggtcaccaaaataatatgaaga Alignment from Spaln_aa2Genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agcctgtgcattgccagggcttgctcctcgtgggcctgtttgctttgcagCCCTCTGCTCCTTTGGCTGTGGGAGTGGCCATCTGCACACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtatgtgtgatggaaaagggcagatgggggtcaccaaaataatatgaaga Alignment from Spaln_nt2Genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agcctgtgcattgccagggcttgctcctcgtgggcctgtttgctttgcagCCCTCTGCTCCTTTGGCTGTGGGAGTGGCCATCTGCACACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtatgtgtgatggaaaagggcagatgggggtcaccaaaataatatgaaga Alignment from Pairagon CCCTCTGCTCCTTTGGCTGTGGGAGTGG-CATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agcctgtgcattgccagggcttgctcctcgtgggcctgtttgctttgcagCCCTCTGCTCCTTTGGCTGTGGGAGTGGCCATCTGCA-CACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtatgtgtgatggaaaagggcagatgggggtcaccaaaataatatgaaga Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agcctgtgcattgccagggcttgctcctcgtgggcctgtttgctttgcagCCCTCTGCTCCTTTGGCTGTGGGAGTGGCCATCTGCACACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtatgtgtgatggaaaagggcagatgggggtcaccaaaataatatgaaga Alignment from Exonerate_coding2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agcctgtgcattgccagggcttgctcctcgtgggcctgtttgctttgcagCCCTCTGCTCCTTTGGCTGTGGGAGTGGCCATCTGCACACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtatgtgtgatggaaaagggcagatgggggtcaccaaaataatatgaaga Alignment from GeneWise CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agcctgtgcattgccagggcttgctcctcgtgggcctgtttgctttgcagCCCTCTGCTCCTTTGGCTGTGGGAGTGGCCATCTGCACACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtatgtgtgatggaaaagggcagatgggggtcaccaaaataatatgaaga #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGT-GGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTCGGGAAAG-AAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTCGGGAAAGAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTCGGGAAAGAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTCGGGAAAGAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTCGGGAAAGAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTCGGGAAAGAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTCGGGAAAGAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTCGGGAAAGAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTG-CAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagggCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGTC-CCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagggCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGTCCCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGTCCCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGTCCCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTG-CAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGTC-CCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGTCCCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGTCCCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCCAGTGTCCCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCT-CAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCCAGCTGAACT-CCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCCAGCTGAACTCCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCCAGCTGAACTCCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCCAGCTGAACTCCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from Pairagon GTTTATCTCAAGTCT-CAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCCAGCTGAACT-CCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCCAGCTGAACTCCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCCAGCTGAACTCCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCCAGCTGAACTCCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCA-GAGAGACAAGACATTTGCAATGAGATAg atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCACGAGAGACAAG-CATTTGTAATGAAATAggtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from CESAR ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCACGAGAGACAAGCATTTGTAATGAAATAggtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCACGAGAGACAAGCATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCA-GAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCACGAGAGACAAG-CATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from Pairagon ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCA-GAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCACGAGAGACAAG-CATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCACGAGAGACAAGCATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCACGAGAGACAAGCATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG atcaactctttgaacattgttttggggtacttttgtaaatgtgcttctagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCTCACGAGAGACAAGCATTTGTAATGAAATAGgtaattactttttttcaatcaatcaaagggattctaacagtcatagctcc #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGAT-GCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATCGCCCTCG-GACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from CESAR ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATCGCCCTCGGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATCGCCCTCGGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATCGCCCTCGGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from Pairagon GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGAT-GCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATCGCCCTCG-GACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATCGCCCTCGGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATCGCCCTCGGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag Alignment from GeneWise GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agctcacaaagctttggactcagggacttaacaaggtttcactaacacagGGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAATTTGTGGATCGCCCTCGGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtagtgcctgcagctgtcggaactagggagccagcttcatccagtatcag #### Yif1a_ID831_3 --> 0 - 0 Original Alignment CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCC-TATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCCTACGTTG-TAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from CESAR CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCCTACGTTGTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Spaln_aa2Genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCCTACGTTGTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Spaln_nt2Genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCCTACGTTGTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Pairagon CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAG-CCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCCTACGTTG-TAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Exonerate_protein2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCCTACGTTGTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Exonerate_coding2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCCTACGTTGTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from GeneWise CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCCTACGTTGTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTG-GCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg agctgacccaccttgggcctaccctgacttttcatctgttacatattaaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGCGCCA-TGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGgggtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg agctgacccaccttgggcctaccctgacttttcatctgttacatattaaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGCGCCATGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGgggtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGCGCCATGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGCGCCATGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGCGCCATGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGCGCCATGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGCGCCATGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGCGCCATGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCC-ATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCCATCACCA-TCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCCATCACCATCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCCATCACCATCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCCATCACCATCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGG-CCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCCATCACCA-TCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCCATCACCATCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCCATCACCATCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGGCCCATCACCATCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc #### Zdhhc16_ID8350_7 --> 1 - 0 Original Alignment tTCTGTGGCCCTG-GCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagtTCTGTGGCCCTGCGCCCTGG-TGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from CESAR tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagtTCTGTGGCCCTGCGCCCTGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from Spaln_aa2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGCGCCCTGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from Spaln_nt2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGCGCCCTGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from Pairagon TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGCGCCCTGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from Exonerate_protein2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGCGCCCTGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from Exonerate_coding2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGCGCCCTGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from GeneWise TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGCGCCCTGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTC-AAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCACGGTGTTGCTCCTTCCAAGG-GCCCCGCTCCTCTATGGGAGCCACAggtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCACGGTGTTGCTCCTTCCAAGGGCCCCGCTCCTCTATGGGAGCCACAggtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCACGGTGTTGCTCCTTCCAAGGGCCCCGCTCCTCTATGGGAGCCACAGgtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCACGGTGTTGCTCCTTCCAAGGGCCCCGCTCCTCTATGGGAGCCACAGgtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCACGGTGTTGCTCCTTCCAAGGGCCCCGCTCCTCTATGGGAGCCACAGgtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCACGGTGTTGCTCCTTCCAAGGGCCCCGCTCCTCTATGGGAGCCACAGgtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCACGGTGTTGCTCCTTCCAAGGGCCCCGCTCCTCTATGGGAGCCACAGgtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtgccctccatttgcaaagggtcacacccaccatgtctccttgatgccagCGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCACGGTGTTGCTCCTTCCAAGGGCCCCGCTCCTCTATGGGAGCCACAGgtaggtgaggaggcctgtgggaaggactgaggctgccctgcatagagcaa #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCAC-AACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagggCGTCGACGATCCTCTGGTCACCACCAACATCA-TCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAggtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagggCGTCGACGATCCTCTGGTCACCACCAACATCATCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAggtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACCAACATCATCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACCAACATCATCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCA-CAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACCAACATCA-TCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACCAACATCATCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACCAACATCATCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACCAACATCATCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGG-GAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagatAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGCGAACCAG-CTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATgggtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagatAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGCGAACCAGCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATgggtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGCGAACCAGCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGCGAACCAGCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGG-GAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGCGAACCAG-CTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGCGAACCAGCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGCGAACCAGCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGCGAACCAGCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAA-GATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAACGATGTCA-GCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAggtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAACGATGTCAGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAggtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAACGATGTCAGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAACGATGTCAGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCA------TCTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAA-GATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAACGATGTCA-GCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCA------TCTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAACGATGTCAGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAACGATGTCAGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAACGATGTCAGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta ####