#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGC-GAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCCGAGAATG-GGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCCGAGAATGGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCCGAGAATGGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCCGAGAATGGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTG-CGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCCGAGAATG-GGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCCGAGAATGGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCCGAGAATGGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCCGAGAATGGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc #### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTG-ATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGCCTGGTACTTATCATTGCACCCTGGAATTATCCTGTGAACTTGCATGATCA-ACCCTTGGTGGGGGCTATTGCTACAggtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGCCTGGTACTTATCATTGCACCCTGGAATTATCCTGTGAACTTGCATGATCAACCCTTGGTGGGGGCTATTGCTACAggtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGCCTGGTACTTATCATTGCACCCTGGAATTATCCTGTGAACTTGCATGATCAACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGCCTGGTACTTATCATTGCACCCTGGAATTATCCTGTGAACTTGCATGATCAACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from Pairagon CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTG-ATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGCCTGGTACTTATCATTGCACCCTGGAATTATCCTGTGAACTTGCATGATCA-ACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGCCTGGTACTTATCATTGCACCCTGGAATTATCCTGTGAACTTGCATGATCAACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGCCTGGTACTTATCATTGCACCCTGGAATTATCCTGTGAACTTGCATGATCAACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggctgtccttactcgtctggtttaacttttgtgttccttgcagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGCCTGGTACTTATCATTGCACCCTGGAATTATCCTGTGAACTTGCATGATCAACCCTTGGTGGGGGCTATTGCTACAGgtaggtggggttccaagtttcactagtctgatccgtcttcctaaggacac #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAG-AAAGAAAAAGCAGCCATGGAAg ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtaggTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGCAAAC-AAAAGCAGCCATGGAAggtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtaggTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGCAAACAAAAGCAGCCATGGAAggtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGCAAACAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGCAAACAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Pairagon GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGCAAACAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGCAAACAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGCAAACAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGCAAACAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCA-GAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagagTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGA-AGTGGTCCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCagtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagagTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGAAGTGGTCCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCagtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGAAGTGGTCCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGAAGTGGTCCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGAAGTGGTCCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGAAGTGGTCCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGAAGTGGTCCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctcccaagctacaaatatttgttctcttccagAGTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGAAGTGGTCCTTTTAGATTCTGAGGACAACCCATCTCTTCCCACTAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgaggcaccaaggaagctttggtttagtaggacatcctgtgctaagggg #### Abcc2_ID8821_5 --> 0 - 0 Original Alignment GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTAT-GGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCC-GATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from CESAR GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_aa2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_nt2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Pairagon GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_protein2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_coding2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from GeneWise GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATCGGTTTCCGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTT-TCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttataggtCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTCTCAGTAA-CAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttataggtCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTCTCAGTAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTCTCAGTAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTT-TCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTCTCAGT-AACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTT-TCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTCTCAGT-AACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTCTCAGTAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTCTCAGTAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTCTCAGTAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGGATGATGGAGCCCGACGACTTC-CGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCCGAGCTT-TCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from CESAR AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_aa2Genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_nt2Genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Pairagon AAGCGGAATGGGATGATGGAGCCCGACGACTT-CCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCCGAGCTT-TCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_protein2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_coding2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from GeneWise AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCCGAGCTTTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc #### Actn3_ID692_18 --> 0 - 0 Original Alignment CACATTCGTGTG-GGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGCGGCT-GGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from CESAR CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGCGGCTGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from Spaln_aa2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGCGGCTGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from Spaln_nt2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGCGGCTGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from Pairagon CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGCGGCTGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from Exonerate_protein2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGCGGCTGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from Exonerate_coding2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGCGGCTGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from GeneWise CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGCGGCTGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCAC-ACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAG-CTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCA-CACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAG-CTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgctaagtctcacccttgggaaaaagggaagggaaagggaagtgatgacat Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG----- tcacagagcagtgtgttaagagagcttacatccccgcttttgtctttcagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGGCTAAgtctcacccttgggaaaaagggaagggaaagggaagtgatgacat #### Actn3_ID694_16 --> 0 - 0 Original Alignment GTCAGA---AAGCTGGTA-CCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG catcttatcaccctcatagttggctattatggtggttacgataactatagGTCAGAAAAAAGCTGGTACCCCAGCC-TGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAATGAGAGGCTGCGGCGACAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgttggtgttgggaggctgggccaacgcagggattggcatgaagcccagct Alignment from CESAR GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG catcttatcaccctcatagttggctattatggtggttacgataactatagGTCAGAAAAAAGCTGGTACCCCAGCCTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAATGAGAGGCTGCGGCGACAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgttggtgttgggaggctgggccaacgcagggattggcatgaagcccagct Alignment from Spaln_aa2Genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG catcttatcaccctcatagttggctattatggtggttacgataactatagGTCAGAAAAAAGCTGGTACCCCAGCCTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAATGAGAGGCTGCGGCGACAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgttggtgttgggaggctgggccaacgcagggattggcatgaagcccagct Alignment from Spaln_nt2Genome GTCAGAAAGCTGGTAC---CCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG catcttatcaccctcatagttggctattatggtggttacgataactatagGTCAGAAAAAAGCTGGTACCCCAGCCTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAATGAGAGGCTGCGGCGACAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgttggtgttgggaggctgggccaacgcagggattggcatgaagcccagct Alignment from Pairagon GTCAG---AAAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG catcttatcaccctcatagttggctattatggtggttacgataactatagGTCAGAAAAAAGCTGGTACCCCAGCCTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAATGAGAGGCTGCGGCGACAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgttggtgttgggaggctgggccaacgcagggattggcatgaagcccagct Alignment from Exonerate_protein2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG catcttatcaccctcatagttggctattatggtggttacgataactatagGTCAGAAAAAAGCTGGTACCCCAGCCTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAATGAGAGGCTGCGGCGACAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgttggtgttgggaggctgggccaacgcagggattggcatgaagcccagct Alignment from Exonerate_coding2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG catcttatcaccctcatagttggctattatggtggttacgataactatagGTCAGAAAAAAGCTGGTACCCCAGCCTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAATGAGAGGCTGCGGCGACAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgttggtgttgggaggctgggccaacgcagggattggcatgaagcccagct Alignment from GeneWise GTCAGAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG catcttatcaccctcatagttggctattatggtggttacgataactatagGTCAGAAAAAAGCTGGTACCCCAGCCTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAATGAGAGGCTGCGGCGACAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgttggtgttgggaggctgggccaacgcagggattggcatgaagcccagct #### Actn3_ID697_13 --> 1 - 0 Original Alignment tGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGC-CAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagtGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCCAAGCCA-CTGTGACCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from CESAR tGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagtGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCCAAGCCACTGTGACCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from Spaln_aa2Genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCCAAGCCACTGTGACCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from Spaln_nt2Genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCCAAGCCACTGTGACCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from Pairagon TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTG-CCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCCAAGCCA-CTGTGACCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from Exonerate_protein2genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCCAAGCCACTGTGACCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from Exonerate_coding2genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCCAAGCCACTGTGACCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc Alignment from GeneWise TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ctcccaccagggtctaactctacacatagtctgtttctgtcccccctcagTGAGCTTGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCCAAGCCACTGTGACCAGTGGGATAACTTAGGTACACTGACCCAGAAGAGGAGAGATGCATTAGAGgtaattggcagggccagggaaccaagggcaaggagataagaccagcaggc #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTAT-CGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCCAACACCTGC-CAAGCCTCCCTGTGTACAGGAGAAGTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCCAACACCTGCCAAGCCTCCCTGTGTACAGGAGAAGTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCCAACACCTGCCAAGCCTCCCTGTGTACAGGAGAAGTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCCAACACCTGCCAAGCCTCCCTGTGTACAGGAGAAGTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTAT-CGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCCAACACCTGC-CAAGCCTCCCTGTGTACAGGAGAAGTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCCAACACCTGCCAAGCCTCCCTGTGTACAGGAGAAGTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCCAACACCTGCCAAGCCTCCCTGTGTACAGGAGAAGTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCCAACACCTGCCAAGCCTCCCTGTGTACAGGAGAAGTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTT-CTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag caggctcttacccacttctcagccaacactttattaatgtcaacccatagagACCGCATCCAAAGAAGGCTTGTTCCCTCTGGT-TCAGCGGAAAATAGCACCATACCGCAATGTCAATGTACAGAACTTCCATACTaggtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag caggctcttacccacttctcagccaacactttattaatgtcaacccatagagACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTTCAGCGGAAAATAGCACCATACCGCAATGTCAATGTACAGAACTTCCATACTaggtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTTCAGCGGAAAATAGCACCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTTCAGCGGAAAATAGCACCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCT-TCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGT-TCAGCGGAAAATAGCACCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTTCAGCGGAAAATAGCACCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTTCAGCGGAAAATAGCACCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG caggctcttacccacttctcagccaacactttattaatgtcaacccatagAGACCGCATCCAAAGAAGGCTTGTTCCCTCTGGTTCAGCGGAAAATAGCACCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtatggctgatgggctccagtggatgcaagtgaggtgtatgctggcccta #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACC-CTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagaaATTGTTGACGGGAACCTGAAAATGACCCCTTGGCA-GATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAggtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagaaATTGTTGACGGGAACCTGAAAATGACCCCTTGGCAGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAggtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCCTTGGCAGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCCTTGGCAGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCCTTGGCAGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCCTTGGCAGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCCTTGGCAGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCCTTGGCAGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac #### Actr1a_ID9870_10 --> 0 - 2 Original Alignment ATATCTGCACCCCAGGAGAGA-CTGTATTCCACATGGATTgg gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACCTGT-TTCCACATGGATCgggtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from CESAR ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTgg gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACCTGTTTCCACATGGATCgggtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from Spaln_aa2Genome ATATCTGCACCCCAGGAGAGACT GTATTCCACATGGATTGGAG gATATCAGCACCCCAGGAGAGACTgtactgagccgttttcactgctgcagatatctgcaccccaggagcgacctgtttccacatggatcgggtaataagcccttctaatagG------AGTAGGATGGGAAgtaagctttt Alignment from Spaln_nt2Genome ATATCTGCACCCCAGGAGAGACT GTA--------TTCCACATGGATTGG gATATCAGCACCCCAGGAGAGACTgtactgagccgttttcactgctgcagatatctgcaccccagGAGCGACCTGTTTCCACATGGATCGGgtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from Pairagon ATATCTGCACCCCAGGAGAGACTGTA-------------------------------------------------TTCCACATGGATTGG gATATCAGCACCCCAGGAGAGACTGTACTGAGCCGTTTTCACTGCTGCAGATATCTGCACCCCAGGAGCGACCTGTTTCCACATGGATCGGgtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from Exonerate_protein2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACCTGTTTCCACATGGATCGGgtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from Exonerate_coding2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACCTGTTTCCACATGGATCGGgtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from GeneWise gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagatatctgcaccccaggagcgacctgtttccacatggatcgggtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat #### Actr1a_ID9872_8 --> 0 - 1 Original Alignment ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGA-GGTTCTACCCTGTTCAAAg gggggtctcagtccgcacccaacctccttctcttttttaatttggttcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGACGGTT-TACCCTGTTTAAAggtgagtatatccacttttgaccctacaggggttagccaaccacagaaatg Alignment from CESAR ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg gggggtctcagtccgcacccaacctccttctcttttttaatttggttcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGACGGTTTACCCTGTTTAAAggtgagtatatccacttttgaccctacaggggttagccaaccacagaaatg Alignment from Spaln_aa2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gggggtctcagtccgcacccaacctccttctcttttttaatttggttcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGACGGTTTACCCTGTTTAAAGgtgagtatatccacttttgaccctacaggggttagccaaccacagaaatg Alignment from Spaln_nt2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gggggtctcagtccgcacccaacctccttctcttttttaatttggttcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGACGGTTTACCCTGTTTAAAGgtgagtatatccacttttgaccctacaggggttagccaaccacagaaatg Alignment from Pairagon ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gggggtctcagtccgcacccaacctccttctcttttttaatttggttcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGACGGTTTACCCTGTTTAAAGgtgagtatatccacttttgaccctacaggggttagccaaccacagaaatg Alignment from Exonerate_protein2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gggggtctcagtccgcacccaacctccttctcttttttaatttggttcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGACGGTTTACCCTGTTTAAAGgtgagtatatccacttttgaccctacaggggttagccaaccacagaaatg Alignment from Exonerate_coding2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gggggtctcagtccgcacccaacctccttctcttttttaatttggttcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGACGGTTTACCCTGTTTAAAGgtgagtatatccacttttgaccctacaggggttagccaaccacagaaatg Alignment from GeneWise ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gggggtctcagtccgcacccaacctccttctcttttttaatttggttcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGACGGTTTACCCTGTTTAAAGgtgagtatatccacttttgaccctacaggggttagccaaccacagaaatg #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATT-CTGGACTTCATCGAGCTCTTCAACCAAg atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcaggtCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCCTGGACTTCA-TGAGCTCTTTAACCAAggtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from CESAR gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcaggtCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCCTGGACTTCATGAGCTCTTTAACCAAggtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCCTGGACTTCATGAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTC-TGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCCTGGACTTCAT-GAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from Pairagon GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATT-CTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCCTGGACTTCAT-GAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCCTGGACTTCATGAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCCTGGACTTCATGAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCCTGGACTTCATGAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta #### Add3_ID11215_7 --> 0 - 0 Original Alignment GTGCTCGTCCTCAGGAAC-CATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCCATGGCATGG-GGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from CESAR GTGCTCGTCCTCAGGAAC------CATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCCATGGCATGGG------GGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from Spaln_aa2Genome GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCCATGGCATGGGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from Spaln_nt2Genome GTGCTCGTCCTCAGGAACC-ATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCCATGGCATGG-GGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from Pairagon GTGCTCGTCCTCAGGAA-CCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCCATGGCATGG-GGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from Exonerate_protein2genome GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCCATGGCATGGGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from Exonerate_coding2genome GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCCATGGCATGGGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from GeneWise GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCCATGGCATGGGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt #### Adrbk1_ID476_19 --> 0 - 0 Original Alignment CAGAGCCTCCTG-ACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tggaccctgggaccttccttcacagtttatctgtgtcccttcccatacagCAGAGCCTCCTGCACTATGG-GGAAATACAGTCAGTCGAAGAGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgtgtgtgagtgaggggtgagcttagggtataggtggggggtgggtgct Alignment from CESAR CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tggaccctgggaccttccttcacagtttatctgtgtcccttcccatacagCAGAGCCTCCTGCACTATGGGGAAATACAGTCAGTCGAAGAGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgtgtgtgagtgaggggtgagcttagggtataggtggggggtgggtgct Alignment from Spaln_aa2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tggaccctgggaccttccttcacagtttatctgtgtcccttcccatacagCAGAGCCTCCTGCACTATGGGGAAATACAGTCAGTCGAAGAGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgtgtgtgagtgaggggtgagcttagggtataggtggggggtgggtgct Alignment from Spaln_nt2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tggaccctgggaccttccttcacagtttatctgtgtcccttcccatacagCAGAGCCTCCTGCACTATGGGGAAATACAGTCAGTCGAAGAGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgtgtgtgagtgaggggtgagcttagggtataggtggggggtgggtgct Alignment from Pairagon CAGAGCCTCCTG-ACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tggaccctgggaccttccttcacagtttatctgtgtcccttcccatacagCAGAGCCTCCTGCACTATGG-GGAAATACAGTCAGTCGAAGAGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgtgtgtgagtgaggggtgagcttagggtataggtggggggtgggtgct Alignment from Exonerate_protein2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tggaccctgggaccttccttcacagtttatctgtgtcccttcccatacagCAGAGCCTCCTGCACTATGGGGAAATACAGTCAGTCGAAGAGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgtgtgtgagtgaggggtgagcttagggtataggtggggggtgggtgct Alignment from Exonerate_coding2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tggaccctgggaccttccttcacagtttatctgtgtcccttcccatacagCAGAGCCTCCTGCACTATGGGGAAATACAGTCAGTCGAAGAGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgtgtgtgagtgaggggtgagcttagggtataggtggggggtgggtgct Alignment from GeneWise CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tggaccctgggaccttccttcacagtttatctgtgtcccttcccatacagCAGAGCCTCCTGCACTATGGGGAAATACAGTCAGTCGAAGAGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgtgtgtgagtgaggggtgagcttagggtataggtggggggtgggtgct #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCC-TTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagacTATGCCTTGGGTAAGGACTGCATTGTAGATGGCTACATGTCCAAGATGGGCAACCCCCTTCC-GACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagacTATGCCTTGGGTAAGGACTGCATTGTAGATGGCTACATGTCCAAGATGGGCAACCCCCTTCCGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCTACATGTCCAAGATGGGCAACCCCCTTCCGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCTACATGTCCAAGATGGGCAACCCCCTTCCGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from Pairagon ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCTACATGTCCAAGATGGGCAACCCCCTTCCGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCTACATGTCCAAGATGGGCAACCCCCTTCCGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCTACATGTCCAAGATGGGCAACCCCCTTCCGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtgactgggtggggtgggcgctttgcgagtgttctgtgtgtgctgcagACTATGCCTTGGGTAAGGACTGCATTGTAGATGGCTACATGTCCAAGATGGGCAACCCCCTTCCGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCAAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCGgtaagtaaaaggtcaggcagagcatggtgtgggtatcagggtggaccctg #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGT-TCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaaggGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATCTCTCTGG-TTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from CESAR gGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaaggGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATCTCTCTGGTTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Spaln_aa2Genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATCTCTCTGGTTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Spaln_nt2Genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGT-TCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATCTCTCTGG-TTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Pairagon GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATCTCTCTGGTTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Exonerate_protein2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATCTCTCTGGTTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Exonerate_coding2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATCTCTCTGGTTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from GeneWise -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATCTCTCTGGTTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCC-TATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg actccaaccacaaccttcttcctctttgagtaatgaattttttcttacaggGGCACACATGGGTACATGGCCCCCGAAGTACTACAAAAGGGCGTAGCCCTATG-CAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAgggtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from CESAR gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg actccaaccacaaccttcttcctctttgagtaatgaattttttcttacaggGGCACACATGGGTACATGGCCCCCGAAGTACTACAAAAGGGCGTAGCCCTATGCAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAgggtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from Spaln_aa2Genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACAAAAGGGCGTAGCCCTATGCAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from Spaln_nt2Genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACAAAAGGGCGTAGCCCTATGCAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from Pairagon GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGG-CCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACAAAAGGGCGTAGCCCTATG-CAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from Exonerate_protein2genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACAAAAGGGCGTAGCCCTATGCAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from Exonerate_coding2genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACAAAAGGGCGTAGCCCTATGCAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from GeneWise GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACAAAAGGGCGTAGCCCTATGCAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATG-TCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGG gaccccagccttggcctgccttccctaaagtccatttttctcctctgtagGACTGTCCCTTCACTGTGTGCATGCTCAT-TGCATTCCACACGCCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACggtaccttagcttaggggatggaggggctgtgtatcttcttcccaggtGGG Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGG gaccccagccttggcctgccttccctaaagtccatttttctcctctgtagGACTGTCCCTTCACTGTGTGCATGCTCATTGCATTCCACACGCCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACggtaccttagcttaggggatggagtaacctactctgtcccctgcaggtGGG Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGG gaccccagccttggcctgccttccctaaagtccatttttctcctctgtagGACTGTCCCTTCACTGTGTGCATGCTCATTGCATTCCACACGCCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaccttagcttaggggatggaggggctgtgtatcttcttcccagGTGGG Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGG gaccccagccttggcctgccttccctaaagtccatttttctcctctgtagGACTGTCCCTTCACTGTGTGCATGCTCATTGCATTCCACACGCCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaccttagcttaggggatggaggggctgtgtatcttcttcccagGTGGG Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGG gaccccagccttggcctgccttccctaaagtccatttttctcctctgtagGACTGTCCCTTCACTGTGTGCATGCTCATTGCATTCCACACGCCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaccttagcttaggggatggaggggctgtgtatcttcttcccagGTGGG Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGG gaccccagccttggcctgccttccctaaagtccatttttctcctctgtagGACTGTCCCTTCACTGTGTGCATGCTCATTGCATTCCACACGCCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaccttagcttaggggatggaggggctgtgtatcttcttcccagGTGGG Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGG gaccccagccttggcctgccttccctaaagtccatttttctcctctgtagGACTGTCCCTTCACTGTGTGCATGCTCATTGCATTCCACACGCCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaccttagcttaggggatggaggggctgtgtatcttcttcccagGTGGG Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGG gaccccagccttggcctgccttccctaaagtccatttttctcctctgtagGACTGTCCCTTCACTGTGTGCATGCTCATTGCATTCCACACGCCAGATAAGCTAAGCTTCATCCTGGACCTCATGAACGgtaccttagcttaggggatggaggggctgtgtatcttcttcccagGTGGG #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATG-GTGCCGTAAAGCGGATACAGGCAAGatgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGTGCCGTAAAGCGGATACAGGCAAGatgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Spaln_nt2Genome ACCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacAGCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTAT-GGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Pairagon CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTAT-GGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Exonerate_protein2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Exonerate_coding2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGGTTCTGCCAGTGGAAG-AATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagtGATAAGTTCACACATTTCTGTCAGTGGAAGCAATA-TGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from CESAR tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagtGATAAGTTCACACATTTCTGTCAGTGGAAGCAATATGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from Spaln_aa2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATTTCTGTCAGTGGAAGCAATATGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from Spaln_nt2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATTTCTGTCAGTGGAAGCAATATGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from Pairagon TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATTTCTGTCAGTGGAAGCAATATGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from Exonerate_protein2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATTTCTGTCAGTGGAAGCAATATGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from Exonerate_coding2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATTTCTGTCAGTGGAAGCAATATGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATTTCTGTCAGTGGAAGCAATATGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAATGCT-ACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAAAATGCTCACAGAGC-TGTCCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from CESAR CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAAAATGCTCACAGAGCTGTCCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAAAATGCTCACAGAGCTGTCCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAAAATGCTCACAGAGCTGTCCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from Pairagon CCCTTTTCAAAGAATGCT-ACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAAAATGCTCACAGAGC-TGTCCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAAAATGCTCACAGAGCTGTCCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from Exonerate_coding2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAAAATGCTCACAGAGCTGTCCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ttaaaagggaaagaaagagccttattcaacattcttttcattcttctcagCCCTTTTCAAAAAATGCTCACAGAGCTGTCCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTCTTTCAGgtaagagttgggtgctcctcatggccccattccctacccacccagatctc #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTG-GTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCTGGAGACAGAGGAGGAACGTGTGCGTCCGCA-CCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCTGGAGACAGAGGAGGAACGTGTGCGTCCGCACCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCTGGAGACAGAGGAGGAACGTGTGCGTCCGCACCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCTGGAGACAGAGGAGGAACGTGTGCGTCCGCACCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTG-GTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCTGGAGACAGAGGAGGAACGTGTGCGTCCGCA-CCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCTGGAGACAGAGGAGGAACGTGTGCGTCCGCACCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCTGGAGACAGAGGAGGAACGTGTGCGTCCGCACCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctcgattgtgtctgctccacagATCAAGAAATATGAAAAGCTGGAGACAGAGGAGGAACGTGTGCGTCCGCACCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCCTGCTCACATgtaagggttcagtggggtgtgaatccatctgttgatcctagctatgtggg #### Afap1l2_ID12248_15 --> 0 - 0 Original Alignment GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCA-GGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACACAGAGTCACCACGGAG-CCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from CESAR GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACACAGAGTCACCACGGAGCCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Spaln_aa2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACACAGAGTCACCACGGAGCCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Spaln_nt2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACACAGAGTCACCACGGAGCCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Pairagon GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACACAGAGTCACCACGGAGCCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Exonerate_protein2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACACAGAGTCACCACGGAGCCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Exonerate_coding2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACACAGAGTCACCACGGAGCCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from GeneWise GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACACAGAGTCACCACGGAGCCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTAT-TGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATCTGCC-GTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATCTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATCTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATCTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATCTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATCTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATCTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATCTGCCGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTG-ACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg cccgctccctgtgaggccccacagaaccctcttcccttgcactctgacagGCTACACAGTTGGACTCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGCACACTTGTGC-ACTGGTGGGGGCTGTAGCCGCAggtaggtagttcttaaccctccaacagccctccacatggggctacctgaga Alignment from CESAR GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg cccgctccctgtgaggccccacagaaccctcttcccttgcactctgacagGCTACACAGTTGGACTCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGCACACTTGTGCACTGGTGGGGGCTGTAGCCGCAggtaggtagttcttaaccctccaacagccctccacatggggctacctgaga Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cccgctccctgtgaggccccacagaaccctcttcccttgcactctgacagGCTACACAGTTGGACTCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGCACACTTGTGCACTGGTGGGGGCTGTAGCCGCAGgtaggtagttcttaaccctccaacagccctccacatggggctacctgaga Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTG-ACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cccgctccctgtgaggccccacagaaccctcttcccttgcactctgacagGCTACACAGTTGGACTCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGCACACTTGTG-CACTGGTGGGGGCTGTAGCCGCAGgtaggtagttcttaaccctccaacagccctccacatggggctacctgaga Alignment from Pairagon GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTG-ACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cccgctccctgtgaggccccacagaaccctcttcccttgcactctgacagGCTACACAGTTGGACTCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGCACACTTGTG-CACTGGTGGGGGCTGTAGCCGCAGgtaggtagttcttaaccctccaacagccctccacatggggctacctgaga Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cccgctccctgtgaggccccacagaaccctcttcccttgcactctgacagGCTACACAGTTGGACTCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGCACACTTGTGCACTGGTGGGGGCTGTAGCCGCAGgtaggtagttcttaaccctccaacagccctccacatggggctacctgaga Alignment from Exonerate_coding2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cccgctccctgtgaggccccacagaaccctcttcccttgcactctgacagGCTACACAGTTGGACTCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGCACACTTGTGCACTGGTGGGGGCTGTAGCCGCAGgtaggtagttcttaaccctccaacagccctccacatggggctacctgaga Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG cccgctccctgtgaggccccacagaaccctcttcccttgcactctgacagGCTACACAGTTGGACTCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGCACACTTGTGCACTGGTGGGGGCTGTAGCCGCAGgtaggtagttcttaaccctccaacagccctccacatggggctacctgaga #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATA-CCTTTAGTGGGGGCCATTGCTGCAg tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCCTTTAGTGG-GGCCATTGCTGCGggtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCCTTTAGTGGGGCCATTGCTGCGggtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCCTTTAGTGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACC-TTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCCTTTAGTGGGG-CCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATA-CCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCCTTTAGT-GGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCCTTTAGTGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCCTTTAGTGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCCTTTAGTGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGG-CAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg tagttgccctgccctgtgtctgactactacacctgttttcctttttacagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGAGGAGACCAGGCCAGCTGC-GGAACACAAATTCGACTATATCTTCTTCACAggtgagcagagccctgaggatatgggggccctgtccaggacctggggtaga Alignment from CESAR AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg tagttgccctgccctgtgtctgactactacacctgttttcctttttacagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGAGGAGACCAGGCCAGCTGCGGAACACAAATTCGACTATATCTTCTTCACAggtgagcagagccctgaggatatgggggccctgtccaggacctggggtaga Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG tagttgccctgccctgtgtctgactactacacctgttttcctttttacagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGAGGAGACCAGGCCAGCTGCGGAACACAAATTCGACTATATCTTCTTCACAGgtgagcagagccctgaggatatgggggccctgtccaggacctggggtaga Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG tagttgccctgccctgtgtctgactactacacctgttttcctttttacagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGAGGAGACCAGGCCAGCTGCGGAACACAAATTCGACTATATCTTCTTCACAGgtgagcagagccctgaggatatgggggccctgtccaggacctggggtaga Alignment from Pairagon AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGG-CAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG tagttgccctgccctgtgtctgactactacacctgttttcctttttacagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGAGGAGACCAGGCCAGCTGC-GGAACACAAATTCGACTATATCTTCTTCACAGgtgagcagagccctgaggatatgggggccctgtccaggacctggggtaga Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG tagttgccctgccctgtgtctgactactacacctgttttcctttttacagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGAGGAGACCAGGCCAGCTGCGGAACACAAATTCGACTATATCTTCTTCACAGgtgagcagagccctgaggatatgggggccctgtccaggacctggggtaga Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG tagttgccctgccctgtgtctgactactacacctgttttcctttttacagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGAGGAGACCAGGCCAGCTGCGGAACACAAATTCGACTATATCTTCTTCACAGgtgagcagagccctgaggatatgggggccctgtccaggacctggggtaga Alignment from GeneWise AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACA- tagttgccctgccctgtgtctgactactacacctgttttcctttttacagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGAGGAGACCAGGCCAGCTGCGGAACACAAATTCGACTATATCTTCTTCACAGgtgagcagagccctgaggatatgggggccctgtccaggacctggggtaga #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTAT-TTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccaggaAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATCTTCAATG-TGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTggtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccaggaAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATCTTCAATGTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTggtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTATGAT---GACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATCTTCAATGTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATCTTCAATGTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTAT-TTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATCTTCAATG-TGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATCTTCAATGTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATCTTCAATGTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from GeneWise TCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccaggaagCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATCTTCAATGTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATG-GCCCAGCAGCACTCCTCCCACACTTTG ttacttaagtaggcaagaatttcctcatctgtgtgcccccttcctcccagggGGGAAGACTCCATTCCAGTCCTTCTTGGGTATGCGCCCAGC-GCACTCTTCCCACACTTTGgtaaaattggcgaggggagggctgggacaagcctgggtgggtggggccct Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG ttacttaagtaggcaagaatttcctcatctgtgtgcccccttcctcccagggGGGAAGACTCCATTCCAGTCCTTCTTGGGTATGCGCCCAGCGCACTCTTCCCACACTTTGgtaaaattggcgaggggagggctgggacaagcctgggtgggtggggccct Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG ttacttaagtaggcaagaatttcctcatctgtgtgcccccttcctcccagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGTATGCGCCCAGCGCACTCTTCCCACACTTTGgtaaaattggcgaggggagggctgggacaagcctgggtgggtggggccct Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG ttacttaagtaggcaagaatttcctcatctgtgtgcccccttcctcccagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGTATGCGCCCAGCGCACTCTTCCCACACTTTGgtaaaattggcgaggggagggctgggacaagcctgggtgggtggggccct Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATG-GCCCAGCAGCACTCCTCCCACACTTTG ttacttaagtaggcaagaatttcctcatctgtgtgcccccttcctcccagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGTATGCGCCCAGC-GCACTCTTCCCACACTTTGgtaaaattggcgaggggagggctgggacaagcctgggtgggtggggccct Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG ttacttaagtaggcaagaatttcctcatctgtgtgcccccttcctcccagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGTATGCGCCCAGCGCACTCTTCCCACACTTTGgtaaaattggcgaggggagggctgggacaagcctgggtgggtggggccct Alignment from Exonerate_coding2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG ttacttaagtaggcaagaatttcctcatctgtgtgcccccttcctcccagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGTATGCGCCCAGCGCACTCTTCCCACACTTTGgtaaaattggcgaggggagggctgggacaagcctgggtgggtggggccct Alignment from GeneWise GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG ttacttaagtaggcaagaatttcctcatctgtgtgcccccttcctcccagGGGGGAAGACTCCATTCCAGTCCTTCTTGGGTATGCGCCCAGCGCACTCTTCCCACACTTTGgtaaaattggcgaggggagggctgggacaagcctgggtgggtggggccct #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAAC-TTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACCTTGG-GTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTggtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACCTTGGGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTggtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACCTTGGGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACCTTGGGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACCTTGGGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACCTTGGGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Exonerate_coding2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACCTTGGGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACCTTGGGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt #### Ankrd2_ID8374_8 --> 0 - 0 Original Alignment GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATC-AAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCCAAACTGCTGC-CTTACATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from CESAR GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCCAAACTGCTGCCTTACATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Spaln_aa2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCCAAACTGCTGCCTTACATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Spaln_nt2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCCAAACTGCTGCCTTACATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Pairagon GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCAT-CAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCCAAACTGCTGC-CTTACATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Exonerate_protein2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCCAAACTGCTGCCTTACATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Exonerate_coding2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCCAAACTGCTGCCTTACATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from GeneWise GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCCAAACTGCTGCCTTACATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg #### BC049760_ID1437_2 --> 0 - 2 Original Alignment CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAAC-ACTCCGGTGCCCATAGACGATGAGACGac atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTGAACCACACCAGTGC-AATAGATGATGAGACAacgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from CESAR CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTGAACCACACCAGTGCAATAGATGATGAGACAacgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from Spaln_aa2Genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTGAACCACACCAGTGCAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from Spaln_nt2Genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAAC-ACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTGAACCACACCAGTG-CAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from Pairagon CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAA-CACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTGAACCACACCAGTGCA-ATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from Exonerate_protein2genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTGAACCACACCAGTGCAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from Exonerate_coding2genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTGAACCACACCAGTGCAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg Alignment from GeneWise CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC atttggatgcctcatgctgttcggggttgaattttcttttttcttcctagCCATCTTCCGAGCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTGAACCACACCAGTGCAATAGATGATGAGACAACgtcagtctgactgaaaagttgcccgaataatgcatattagtgaggaattg #### Bbs1_ID728_6 --> 1 - 2 Original Alignment gGAAAAGGCAGACGTG-CCTTTGTCTGTGCAGTCACTCag tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcaggGAAAAGGCAGATGTACCCTTTGT-TGTGCAGTCACTTaggtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from CESAR gGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCag tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcaggGAAAAGGCAGATGTACCCTTTGTTGTGCAGTCACTTaggtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from Spaln_aa2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagGGAAAAGGCAGATGTACCCTTTGTTGTGCAGTCACTTAGgtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from Spaln_nt2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagGGAAAAGGCAGATGTACCCTTTGTTGTGCAGTCACTTAGgtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from Pairagon GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagGGAAAAGGCAGATGTACCCTTTGTTGTGCAGTCACTTAGgtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from Exonerate_protein2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagGGAAAAGGCAGATGTACCCTTTGTTGTGCAGTCACTTAGgtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from Exonerate_coding2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagGGAAAAGGCAGATGTACCCTTTGTTGTGCAGTCACTTAGgtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from GeneWise GGA tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagggaaaaggcagatgtaccctttgttgtgcagtcacttaggtatgcgtccattgcagagagggtgggggggatgtccatagaggtagCTA #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGC-TTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCCTTTG-TGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCCTTTGTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCCTTTGTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCCTTTGTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCCTTTGTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCCTTTGTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCCTTTGTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCCTTTGTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGAT-AACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg tcctacggaggggagtcatgcctcactgtaacctctctcctacctcatagGTTAATACCCGACAAAGGGATCAACTCAC-CCATGGAGCCCCGCACCGCATCTCACACCATCAGCCAggtgagttagttggttgatagaagtgtaggctggctgggcatgagggttgg Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg tcctacggaggggagtcatgcctcactgtaacctctctcctacctcatagGTTAATACCCGACAAAGGGATCAACTCACCCATGGAGCCCCGCACCGCATCTCACACCATCAGCCAggtgagttagttggttgatagaagtgtaggctggctgggcatgagggttgg Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tcctacggaggggagtcatgcctcactgtaacctctctcctacctcatagGTTAATACCCGACAAAGGGATCAACTCACCCATGGAGCCCCGCACCGCATCTCACACCATCAGCCAGgtgagttagttggttgatagaagtgtaggctggctgggcatgagggttgg Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGAT-AACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tcctacggaggggagtcatgcctcactgtaacctctctcctacctcatagGTTAATACCCGACAAAGGGATCAACTCAC-CCATGGAGCCCCGCACCGCATCTCACACCATCAGCCAGgtgagttagttggttgatagaagtgtaggctggctgggcatgagggttgg Alignment from Pairagon GTTAATATCCGACAAAGGGAT-AACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tcctacggaggggagtcatgcctcactgtaacctctctcctacctcatagGTTAATACCCGACAAAGGGATCAACTCAC-CCATGGAGCCCCGCACCGCATCTCACACCATCAGCCAGgtgagttagttggttgatagaagtgtaggctggctgggcatgagggttgg Alignment from Exonerate_protein2genome TCGCGCCATC TCCTACGGAGgggagtcatgcctcactgtaacctctctcctacctcataggttaatacccgacaaagggatcaactcacccatggagccccgcaccgcatctcacaccatcagccaggtgagttagttggttgatagaagtgtaggctggctgggcatgagggttgg Alignment from Exonerate_coding2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tcctacggaggggagtcatgcctcactgtaacctctctcctacctcatagGTTAATACCCGACAAAGGGATCAACTCACCCATGGAGCCCCGCACCGCATCTCACACCATCAGCCAGgtgagttagttggttgatagaagtgtaggctggctgggcatgagggttgg Alignment from GeneWise GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tcctacggaggggagtcatgcctcactgtaacctctctcctacctcatagGTTAATACCCGACAAAGGGATCAACTCACCCATGGAGCCCCGCACCGCATCTCACACCATCAGCCAGgtgagttagttggttgatagaagtgtaggctggctgggcatgagggttgg #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGT-CAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtaagctgctattgttcatacagatcctcttttttctacttcacttacagcTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCCAGCTCCTTG-GATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACtggcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from CESAR cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtaagctgctattgttcatacagatcctcttttttctacttcacttacagcTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCCAGCTCCTTGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACtggcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCCAGCTCCTTGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCCAGCTCCTTGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Pairagon CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCCAGCTCCTTGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCCAGCTCCTTGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCCAGCTCCTTGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from GeneWise CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGAC---------------TG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCCAGCTCCTTGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGGCAAGTGAATGCTACgttctataataggcctggtatcccttggcaaatga #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAAT-GGAGATGGCCTGGTTGACTTTGAAg gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATCGGAGATGGCC-GGTTGACTTTGAAggtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAAT-GGAGATGGCCTGGTTGACTTTGAAg gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATCGGAGATGGC-CGGTTGACTTTGAAggtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATCGGAGATGGCCGGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAAT-GGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATCGGAGATGGCC-GGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAAT-GGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATCGGAGATGGCC-GGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATCGGAGATGGCCGGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATCGGAGATGGCCGGTTGACTTTGAAggtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA---GAATTTGTTCGGATGATGTCTCGG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATCGGAGATGGCCGGTTGACTTTGAAGGTAAGTTTTCCCCTACTTATTTCCACatggcagcatttctgaatagtgtg #### Cabp4_ID342_2 --> 0 - 1 Original Alignment GATCGTGAACTG-GGCCCTGAGGAGTTGGAGg gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGCGGCC-TGAGGAGTTGGAGggtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from CESAR GATCGTGAACTGGGCCCTGAGGAGTTGGAGg gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGCGGCCTGAGGAGTTGGAGggtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from Spaln_aa2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGCGGCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from Spaln_nt2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGCGGCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from Pairagon GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGCGGCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from Exonerate_protein2genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGCGGCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from Exonerate_coding2genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGCGGCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from GeneWise gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccaggatcgtgaactgcggcctgaggagttggagggtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGACACAGAC-CTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagggTTTTCCAAACTTCTGGACACAGGCCCTGGATG-TGTTGTGACCTTTGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagggTTTTCCAAACTTCTGGACACAGGCCCTGGATGTGTTGTGACCTTTGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagGGTTTTCCAAACTTCTGGACACAGGCCCTGGATGTGTTGTGACCTTTGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagGGTTTTCCAAACTTCTGGACACAGGCCCTGGATGTGTTGTGACCTTTGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from Pairagon GGTTTTTCAAACTTCTGGACACAGA-CCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagGGTTTTCCAAACTTCTGGACACAGGCCCTGGAT-GTGTTGTGACCTTTGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagGGTTTTCCAAACTTCTGGACACAGGCCCTGGATGTGTTGTGACCTTTGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from Exonerate_coding2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagGGTTTTCCAAACTTCTGGACACAGGCCCTGGATGTGTTGTGACCTTTGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from GeneWise tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagggttttccaaacttctggacacaggccctggatgtgttgtgacctttgatctctttaaggtgagataatcccccctactaacctaacccagccaggacgggcatccaca #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGCAAGC-GGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGCAAGCGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGCAAGCGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGCAAGCGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from Pairagon CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGCAAGCGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGCAAGCGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from Exonerate_coding2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGCAAGCGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgcaagtggcaggatgttccctgggaccacatgtggaaacaaagctccatt Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTGACCATCTTCCGG-- ctcacataagtactttaggccaagtagttgtctgatctttccccatccagCGAGATGGAAATGGGCAAGCGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGGCAAGTGGCAGGATgttccctgggaccacatgtggaaacaaagctccatt #### Capn1_ID1363_13 --> 1 - 0 Original Alignment gGAACTAGATGACCAG-ATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcaggGAACTAGATGACCAGCATTCAGGCTA-CCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from CESAR gGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcaggGAACTAGATGACCAGCATTCAGGCTACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from Spaln_aa2Genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagGGAACTAGATGACCAGCATTCAGGCTACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from Spaln_nt2Genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagGGAACTAGATGACCAGCATTCAGGCTACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from Pairagon GGAACTAGATGACCAG-ATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagGGAACTAGATGACCAGCATTCAGGCT-ACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from Exonerate_protein2genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagGGAACTAGATGACCAGCATTCAGGCTACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from Exonerate_coding2genome ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagggaactagatgaccagcattcaggctacctccctgatgaagtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from GeneWise GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagGGAACTAGATGACCAGCATTCAGGCTACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGA-TTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGACTTGCTGG-GAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAggtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGACTTGCTGGGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAggtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGACTTGCTGGGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGACTTGCTGGGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGA-TTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGACTTGCTGG-GAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGACTTGCTGGGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGACTTGCTGGGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaagctcctcctttccccacccatagGTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCATGGCCAACAGGCATTGCCTCTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTGGGACTTGCTGGGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCAATATGCCCACCTGTCCGGCTGCCCTTACCAGgtaaatgcccgagctaggcagaaactgggagtagagacaggcctctatac #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACC-TTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg gacccatggacaagacccttgattaatgttgtctatttgttcttgcctaggcTGCCCTGGGGCAGAGGTGACCCTTGTGCA-TCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTggtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg gacccatggacaagacccttgattaatgttgtctatttgttcttgcctaggcTGCCCTGGGGCAGAGGTGACCCTTGTGCATCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTggtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCCTTGTGCATCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCCTTGTGCATCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGA-CCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCCTTGTGCA-TCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCCTTGTGCATCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCCTTGTGCATCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCCTTGTGCATCTTGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTT-ACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctgattacagtgatggtattcttcctccttattttaatagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTCACCACAC-CTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctgattacagtgatggtattcttcctccttattttaatagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTCACCACACCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTCACCACACCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTCACCACACCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTT-ACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTCACCACAC-CTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTCACCACACCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTCACCACACCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTCACCACACCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCG-TTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagcCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCCTGCTCA-AGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagcCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCCTGCTCAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCCTGCTCAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCCTGCTCAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Pairagon CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCG-TTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCCTGCTC-AAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCCTGCTCAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCCTGCTCAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCCTGCTCAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTC-AGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg cctccctgtgtttggatgacccttctccgccttgcattcatccactctagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCCAGTT-CCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAggtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg cctccctgtgtttggatgacccttctccgccttgcattcatccactctagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCCAGTTCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAggtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCCAGTTCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCCAGTTCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCCAGTTCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCCAGTTCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCCAGTTCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCCAGTTCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTC-ATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcaggAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCCATTCGGC-CCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcaggAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCCATTCGGCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCCATTCGGCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCCATTCGGCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCCATTCGGCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCCATTCGGCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Exonerate_coding2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCCATTCGGCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCCATTCGGCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAA-CAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtaagtatgctcagggtcagctgaatgcattgtcttcctcaggGACCAGCTTAATGCCTTGCACCAGGAGAAACCAGAAGC-GGTTGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTaagtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from CESAR GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtgagtatgctcagggtcagctgaatgcattgtcttcctcaggGACCAGCTTAATGCCTTGCACCAGGAGAAACCAGAAGCGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTaagtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from Spaln_aa2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACCAGAAGCGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from Spaln_nt2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAAC-AGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACCAGAAGC-GGTTGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from Pairagon GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAA-CAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACCAGAAGCGGTTG----AGATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from Exonerate_protein2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACCAGAAGCGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from Exonerate_coding2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACCAGAAGCGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from GeneWise GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACCAGAAGCGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGG-GAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gGACCAGC ctggacagtctagggccgggtattcaactttaacctatttctgccctaagCTTCTGACCCAGCTTCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCAAGGCCCTGAGTCGGCAAGAACA-GGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCGAGAGTATctgtgagtatgctcagggtcaggtgactttgtctctgtttccaggGACCAGC Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gGACCAGC ctggacagtctagggccgggtattcaactttaacctatttctgccctaagCTTCTGACCCAGCTTCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCAAGGCCCTGAGTCGGCAAGAACAGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCGAGAGTATctgtgagtatgctcagggtcagctgaatgcattgtcttcctcaggGACCAGC Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtctagggccgggtattcaactttaacctatttctgccctaagCTTCTGACCCAGCTTCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCAAGGCCCTGAGTCGGCAAGAACAGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCGAGAGTATCTgtgagtatgctcagggtcaggtgactttgtctctgtttccagGGACCAGC Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtctagggccgggtattcaactttaacctatttctgccctaagCTTCTGACCCAGCTTCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCAAGGCCCTGAGTCGGCAAGAACAGGAGCTGCTGGAGCGTAGTTTGGAGA---GTGACCCTCTGCATCGTGAGCAGCGAGAGTATCTgtgagtatgctcagggtcaggtgactttgtctctgtttccagGGACCAGC Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtctagggccgggtattcaactttaacctatttctgccctaagCTTCTGACCCAGCTTCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCAAGGCCCTGAGTCGGCAAGAACAGGAGCTGCTGGAGCGTAGTTTGGAGA---GTGACCCTCTGCATCGTGAGCAGCGAGAGTATCTgtgagtatgctcagggtcaggtgactttgtctctgtttccagGGACCAGC Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtctagggccgggtattcaactttaacctatttctgccctaagCTTCTGACCCAGCTTCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCAAGGCCCTGAGTCGGCAAGAACAGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCGAGAGTATCTgtgagtatgctcagggtcaggtgactttgtctctgtttccagGGACCAGC Alignment from Exonerate_coding2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtctagggccgggtattcaactttaacctatttctgccctaagCTTCTGACCCAGCTTCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCAAGGCCCTGAGTCGGCAAGAACAGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCGAGAGTATCTgtgagtatgctcagggtcaggtgactttgtctctgtttccagGGACCAGC Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtctagggccgggtattcaactttaacctatttctgccctaagCTTCTGACCCAGCTTCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCAAGGCCCTGAGTCGGCAAGAACAGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCGAGAGTATCTgtgagtatgctcagggtcaggtgactttgtctctgtttccagGGACCAGC #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGG-GAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccacccttatgattgaccttgggcattcgctcctctgactcctgcagaGCTCAAATGCTACTGGCAGAGGTGTCACGGGGGTGTGGGGAGATCCAAGGTGAACGTGGGCGAGC-GCGGGGCCGCCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAAgtgagttacagtgtgcatgtggcctggcgcagctaagggaggcaagccaa Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccacccttatgattgaccttgggcattcgctcctctgactcctgcagaGCTCAAATGCTACTGGCAGAGGTGTCACGGGGGTGTGGGGAGATCCAAGGTGAACGTGGGCGAGCGCGGGGCCGCCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAAgtgagttacagtgtgcatgtggcctggcgcagctaagggaggcaagccaa Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccacccttatgattgaccttgggcattcgctcctctgactcctgcagAGCTCAAATGCTACTGGCAGAGGTGTCACGGGGGTGTGGGGAGATCCAAGGTGAACGTGGGCGAGCGCGGGGCCGCCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAAgtgagttacagtgtgcatgtggcctggcgcagctaagggaggcaagccaa Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccacccttatgattgaccttgggcattcgctcctctgactcctgcagAGCTCAAATGCTACTGGCAGAGGTGTCACGGGGGTGTGGGGAGATCCAAGGTGAACGTGGGCGAGCGCGGGGCCGCCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAAgtgagttacagtgtgcatgtggcctggcgcagctaagggaggcaagccaa Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccacccttatgattgaccttgggcattcgctcctctgactcctgcagAGCTCAAATGCTACTGGCAGAGGTGTCACGGGGGTGTGGGGAGATCCAAGGTGAACGTGGGCGAGCGCGGGGCCGCCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAAgtgagttacagtgtgcatgtggcctggcgcagctaagggaggcaagccaa Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccacccttatgattgaccttgggcattcgctcctctgactcctgcagAGCTCAAATGCTACTGGCAGAGGTGTCACGGGGGTGTGGGGAGATCCAAGGTGAACGTGGGCGAGCGCGGGGCCGCCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAAgtgagttacagtgtgcatgtggcctggcgcagctaagggaggcaagccaa Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccacccttatgattgaccttgggcattcgctcctctgactcctgcagAGCTCAAATGCTACTGGCAGAGGTGTCACGGGGGTGTGGGGAGATCCAAGGTGAACGTGGGCGAGCGCGGGGCCGCCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAAgtgagttacagtgtgcatgtggcctggcgcagctaagggaggcaagccaa Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccacccttatgattgaccttgggcattcgctcctctgactcctgcagAGCTCAAATGCTACTGGCAGAGGTGTCACGGGGGTGTGGGGAGATCCAAGGTGAACGTGGGCGAGCGCGGGGCCGCCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAAgtgagttacagtgtgcatgtggcctggcgcagctaagggaggcaagccaa #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGG-GCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGCGCTCAGG-GCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from CESAR AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGCGCTCAGGGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGCGCTCAGGGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGG-GCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGCGCTCAGG-GCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGG-GCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGCGCTCAGG-GCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGCGCTCAGGGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGCGCTCAGGGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from GeneWise --------------------------------------------------AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG GGGATGGCAGGGCTAACAACTTTAACACATCACAACAACCCCTCTCACAGAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGCGCTCAGGGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTAC-CCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGG-CCTG---GCTGGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGCCTGGCT---GGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGCCTGGCT---GGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGCCTGG---CTGGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGCCTGG---CTGGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGCCTGGCT---GGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGCCTGGCT---GGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCCAGTGGCCTGGCT---GGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTG-CAGCTGGAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccaggTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCCAGT-GGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from CESAR gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccaggTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCCAGTGGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from Spaln_aa2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCCAGTGGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from Spaln_nt2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCCAGTGGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from Pairagon GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCCAGTGGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from Exonerate_protein2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCCAGTGGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from Exonerate_coding2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCCAGTGGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCCAGTGGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGG-CATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCCACCAGCTGG-GCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGggtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCCACCAGCTGGGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGggtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCCACCAGCTGGGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCCACCAGCTGGGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Pairagon GACCTGGACTCTCTGCGG-CATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCCACCAGCTGG-GCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCCACCAGCTGGGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCCACCAGCTGGGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCCACCAGCTGGGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCC-GGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAG---GAGGCTCGGTCACCTGC-ACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCA---CGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG------GCTCGGTCACCTGCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG---GCTCGGTCACCTGCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGA--GGCTCGGTCACCTG-CACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGA--GGCTCGGTCACCTG-CACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG---GCTCGGTCACCTGCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Exonerate_coding2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG---GCTCGGTCACCTGCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG---GCTCGGTCACCTGCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAG-GTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccaggGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGCGTTCAG---T-GGAAGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from CESAR gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccaggGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAG---CGTTCAGTGGAAGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAG---CGTTCAGTGGAAGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAG-GTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGCGTTCAG----TGGAAGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from Pairagon GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAG-GTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGCGTTCAG----TGGAAGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAG---CGTTCAGTGGAAGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from Exonerate_coding2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAG---CGTTCAGTGGAAGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatccccacttttcttgcccccccagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAG---CGTTCAGTGGAAGCTGAAATTCGAAGACTCCGCCAGGAGgtaagatctaacttcttccccccaacacaccctccaccacccactctata #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTG-CTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCCTGCTGG-GCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCCTGCTGGGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCCTGCTGGGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCCTGCTGGGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCCTGCTGGGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCCTGCTGGGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCCTGCTGGGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCCTGCTGGGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTT-CGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagtGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCA-GGGGCGGGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTT-CGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagtGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGG-GCGGGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGCGGGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTC-GAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGG-CGGGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTT-CGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGCGG-GATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGCGGGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGCGGGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaagtctgtctggatccaggcttacacccagagctctctctctcctgcagTGCTCCGAGTTCCCAAGGGGGACTTCCGTATGGTCAGGGGCGGGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTACCAGgtaagttatcaggagggtgaagcgtgaggcccagcagcacctgttaggat #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAAT-TATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagatTATGCATTTCTAAATCTATGCAC-TTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagatTATGCATTTCTAAATCTATGCACTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATCTATGCACTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATCTATGCACTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Pairagon ATTATGCCTTTCTAAAT-TATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATCTATGCA-CTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATCTATGCACTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATCTATGCACTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from GeneWise -------------------------------------------------GATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT TGGTGACTTAAGTGTTTTGTTGTTCAGGTCTCGAACTCTGACTGTTCTAGATTATGCATTTCTAAATCTATGCACTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc #### Cd6_ID3012_12 --> 2 - 1 Original Alignment ggCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTC-CAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagggCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCCAGCCACCAC-CCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAggtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from CESAR ggCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagggCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCCAGCCACCACCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAggtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from Spaln_aa2Genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCCAGCCACCACCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from Spaln_nt2Genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCCAGCCACCACCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from Pairagon GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTT-CCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCCAGCCACCA-CCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from Exonerate_protein2genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCCAGCCACCACCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from Exonerate_coding2genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCCAGCCACCACCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct Alignment from GeneWise GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggctcctggcagagaataagtaactgagttcttccacagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCCAGCCACCACCCAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgggttcagggatgggccacagaggatgtgggtatgaagaaatct #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTC-CGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCCGGGAGGAAC-AGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCCGGGAGGAACAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCCGGGAGGAACAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Spaln_nt2Genome ACGGCCTGTTTCC-GGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCCGGGAGGAAC-AGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Pairagon ACGGCCTGTTT-CCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCCGGGAGGAAC-AGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCCGGGAGGAACAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCCGGGAGGAACAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCCGGGAGGAACAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc #### Cdc42bpg_ID1575_5 --> 0 - 2 Original Alignment TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCT-GAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACag ctgtcattctgtgtcaggattggatctaacttttctgtttgttcccttagTACCTGCTGATGGACTACTATGCTGGTGGAGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGACTCCCGCCTGAGCTGGCCCAGTTCTATTTGGCTCGAGA-GGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACaggtgagttatgttgtgtcacttccgcccccagtctttaatgcagcggggac Alignment from CESAR TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACag ctgtcattctgtgtcaggattggatctaacttttctgtttgttcccttagTACCTGCTGATGGACTACTATGCTGGTGGAGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGACTCCCGCCTGAGCTGGCCCAGTTCTATTTGGCTCGAGAGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACaggtgagttatgttgtgtcacttccgcccccagtctttaatgcagcggggac Alignment from Spaln_aa2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtcaggattggatctaacttttctgtttgttcccttagTACCTGCTGATGGACTACTATGCTGGTGGAGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGACTCCCGCCTGAGCTGGCCCAGTTCTATTTGGCTCGAGAGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgagttatgttgtgtcacttccgcccccagtctttaatgcagcggggac Alignment from Spaln_nt2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtcaggattggatctaacttttctgtttgttcccttagTACCTGCTGATGGACTACTATGCTGGTGGAGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGACTCCCGCCTGAGCTGGCCCAGTTCTATTTGGCTCGAGAGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgagttatgttgtgtcacttccgcccccagtctttaatgcagcggggac Alignment from Pairagon TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtcaggattggatctaacttttctgtttgttcccttagTACCTGCTGATGGACTACTATGCTGGTGGAGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGACTCCCGCCTGAGCTGGCCCAGTTCTATTTGGCTCGAGAGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgagttatgttgtgtcacttccgcccccagtctttaatgcagcggggac Alignment from Exonerate_protein2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtcaggattggatctaacttttctgtttgttcccttagTACCTGCTGATGGACTACTATGCTGGTGGAGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGACTCCCGCCTGAGCTGGCCCAGTTCTATTTGGCTCGAGAGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgagttatgttgtgtcacttccgcccccagtctttaatgcagcggggac Alignment from Exonerate_coding2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtcaggattggatctaacttttctgtttgttcccttagTACCTGCTGATGGACTACTATGCTGGTGGAGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGACTCCCGCCTGAGCTGGCCCAGTTCTATTTGGCTCGAGAGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgagttatgttgtgtcacttccgcccccagtctttaatgcagcggggac Alignment from GeneWise TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG ctgtcattctgtgtcaggattggatctaacttttctgtttgttcccttagTACCTGCTGATGGACTACTATGCTGGTGGAGACCTTCTCACACTGCTGAGCCGCTTTGAGGACCGACTCCCGCCTGAGCTGGCCCAGTTCTATTTGGCTCGAGAGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgagttatgttgtgtcacttccgcccccagtctttaatgcagcggggac #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTA-CAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACCAACAGGAGA-GGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACCAACAGGAGAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACCAACAGGAGAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTAC-AACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACCAACAGGAG-AGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTA-CAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACCAACAGGAG-AGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACCAACAGGAGAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACCAACAGGAGAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggcggagttgtcctaagggcaactgatgttgtttgttttttatagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACCAACAGGAGAGGACCGCCTTCAGCAGgtaaggatgatgatgagaattttgtcgtgtgttttttggcagtataaatg #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCC-CAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCCAACTGAGGA-GGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAgggtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCCAACTGAGGAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAgggtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCCAACTGAGGAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCCAACTGAGGAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGG-CCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCCAACTGAGG-AGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCCAACTGAGGAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCCAACTGAGGAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCCAACTGAGGAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAG-CTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCCTGGAACTGG-GCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtggtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCCTGGAACTGGGCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtggtaagtatacacagccaggtggcacctctaatactgaggacccaggtcac Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCCTGGAACTGGGCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from Spaln_nt2Genome CTGGCAGGAGAGC-TGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCCTGGAACTGG-GCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from Pairagon CTGGCAGGAGAG-CTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCCTGGAACTGG-GCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCCTGGAACTGGGCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCCTGGAACTGGGCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCCTGGAACTGGGCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat #### Cdc42bpg_ID1588_18 --> 1 - 0 Original Alignment gGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACG-CAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacaggGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCCAGACACTCC-TACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from CESAR gGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacaggGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCCAGACACTCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from Spaln_aa2Genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCCAGACACTCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from Spaln_nt2Genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCCAGACACTCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from Pairagon GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACG-CAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCCAGACACT-CCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from Exonerate_protein2genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCCAGACACTCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from Exonerate_coding2genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCCAGACACTCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt Alignment from GeneWise GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctaatactgaggacccaggtcacatgtcgctcccctacccacagGGTGAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCCAGACACTCCTACCCGGCCTTTGgtaatgcccctgcagatgaaacatgtgtgtgtgtgcttgtgtggatgtgt #### Cdc42bpg_ID1589_19 --> 0 - 2 Original Alignment GATCACCAGTGG-AAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAcg gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGCAAAGCTC-GAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAtggtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgg Alignment from CESAR GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAcg gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGCAAAGCTCGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAtggtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtga Alignment from Spaln_aa2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGCAAAGCTCGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgg Alignment from Spaln_nt2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGCAAAGCTCGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgg Alignment from Pairagon GATCACCAGTGG-AAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGCAAAGCTC-GAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgg Alignment from Exonerate_protein2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGCAAAGCTCGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgg Alignment from Exonerate_coding2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGCAAAGCTCGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgg Alignment from GeneWise GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGCAAAGCTCGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgg #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTAC-GCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACCGCTG-CCTCAGTGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAaggtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from CESAR GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACCGCTGCCTCAGTGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAaggtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from Spaln_aa2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACCGCTGCCTCAGTGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from Spaln_nt2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACCGCTGCCTCAGTGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from Pairagon GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACCGCTGCCTCAGTGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from Exonerate_protein2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACCGCTGCCTCAGTGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from Exonerate_coding2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACCGCTGCCTCAGTGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct Alignment from GeneWise GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaacgagggccagtccagccctctgtccctttctgtcctgcagGTGCGACAGCCCTCATGTGTCCGTTGGGACTGGCAGCGGGTGTACCGCTGCCTCAGTGATTCCCGTCTGTTGTTGTTCGATGCTCCCGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagcaggggtggtatct #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCC-ACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacaggGACCCCCAGTTTTCAGCCCACCCCTGTCT-GGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacaggGACCCCCAGTTTTCAGCCCACCCCTGTCTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCCACCCCTGTCTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCCACCCCTGTCTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Pairagon GGACCCCCAGTTCTCAG-CCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCCACCCCTGTC-TGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCCACCCCTGTCTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCCACCCCTGTCTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagcaggggtggtatctctctgattggctcctttccacagGGACCCCCAGTTTTCAGCCCACCCCTGTCTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtatgtgctcagggtgagatggcccatcctccatatctccacctgtgctt #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagaaAAGGATGAGTTTGAGATTCCCGACCCTGACAGACA-CAGCCGGCGCCAGCTGTTCCGCAGCAAGAGCAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTaggtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from CESAR agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagaaAAGGATGAGTTTGAGATTCCCGACCCTGACAGACACAGCCGGCGCCAGCTGTTCCGCAGCAAGAGCAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTaggtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACCCTGACAGACACAGCCGGCGCCAGCTGTTCCGCAGCAAGAGCAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACCCTGACAGACACAGCCGGCGCCAGCTGTTCCGCAGCAAGAGCAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGACCTCACGGACA---ACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACC---CTGACAGACACAGCCGGCGCCAGCTGTTCCGCAGCAAGAGCAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACCCTGACAGACACAGCCGGCGCCAGCTGTTCCGCAGCAAGAGCAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACCCTGACAGACACAGCCGGCGCCAGCTGTTCCGCAGCAAGAGCAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtcagtagctgtgacgtggctctggctactgggtgggaccttcctattct Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAGGGAG caggcccgctgtgacaagtgaacagctcccacgttcttctctgcgcacagAAAAGGATGAGTTTGAGATTCCCGACCCTGACAGACACAGCCGGCGCCAGCTGTTCCGCAGCAAGAGCAAGCGCCGCTTCTTCTTCCGGGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGGTCAgtagctgtgacgtggctctggctactgggtgggaccttcctattct #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAG-TTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccaggGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAACTTCATCT-ACCGCCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccaggGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAACTTCATCTACCGCCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAACTTCATCTACCGCCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAACTTCATCTACCGCCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAG-TTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAACTTCATCT-ACCGCCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAACTTCATCTACCGCCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAACTTCATCTACCGCCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gggtgaggcctgcatgctggcccagcacttttttttgccctccaatccagGGAGATGCTGAAGGACCCCTTTGTGCGCTCCAAACTTCATCTACCGCCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGGCCCAACACCAGGGATGGGACCCGGgtaagccttgtgcaggtaatcacagaacatgccgcagggttgttggtcca #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACT-GTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTCGTGG-TTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTCGTGGTTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTCGTGGTTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTCGTGGTTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTCGTGGTTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTCGTGGTTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTCGTGGTTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTCGTGGTTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGG-CCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttagctcttactcattcttggatgtcttcttatgatttttttttctaggtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCAACCTG-TCCCAGAGGGAACAAAGGAGAGAAGGGGGACAAAggtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from CESAR gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttagctcttactcattcttggatgtcttcttatgatttttttttctaggtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCAACCTGTCCCAGAGGGAACAAAGGAGAGAAGGGGGACAAAggtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCAACCTGTCCCAGAGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCAACCTGTCCCAGAGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCAACCTGTCCCAGAGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCAACCTGTCCCAGAGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCAACCTGTCCCAGAGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from GeneWise GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCAACCTGTCCCAGAGGGAACAAAGGAGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTG-GGAACCCCAGGCCCCAAAg tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagccTATGGCACTATCCCAGGACCACCTGGCCAGAAAGGAGATGTACGGGA-CCCAGGCCCCAAAggtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from CESAR ccTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagccTATGGCACTATCCCAGGACCACCTGGCCAGAAAGGAGATGTACGGGACCCAGGCCCCAAAggtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from Spaln_aa2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGAAAGGAGATGTACGGGACCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from Spaln_nt2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGAAAGGAGATGTACGGGACCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from Pairagon CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGAAAGGAGATGTACGGGACCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from Exonerate_protein2genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGAAAGGAGATGTACGGGACCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from Exonerate_coding2genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGAAAGGAGATGTACGGGACCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from GeneWise CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGAAAGGAGATGTACGGGACCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTC-AGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa gatagacactattgggcttctcgattcagaacaacatgtcttggtatcaggaAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCCAGTGGAG-AGGGTCTCTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa gatagacactattgggcttctcgattcagaacaacatgtcttggtatcaggaAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCCAGTGGAGAGGGTCTCTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGT---------GTCCAGTGGAGAGGGTCTCTACTGTCTGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTC-AGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCCAGTGGAGA-GGGTCTCTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGT-CAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCCAGTGGAGA-GGGTCTCTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCCAGTGGAGAGGGTCTCTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCCAGTGGAGAGGGTCTCTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCCAGTGGAGAGGGTCTCTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGC-TTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagcaTCAGGGTATAGTGCTGGCCTTGTCCTCTG-TTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAcgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagcaTCAGGGTATAGTGCTGGCCTTGTCCTCTGTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAcgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCCTTGTCCTCTGTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGC-TTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCCTTGTCCTCTG-TTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from Pairagon CATCAGGCTACGGTGCTGG-CTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCCTTGTCCTCTG-TTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCCTTGTCCTCTGTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCCTTGTCCTCTGTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCCTTGTCCTCTGTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagggGCATCATCAAGCACTCCTGTACA-GCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAagtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from CESAR ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagggGCATCATCAAGCACTCCTGTACAGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAagtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from Spaln_aa2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCCTGTACAGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCCTGTACAGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from Pairagon GGGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCCTGTACA-GCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCCTGTACAGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCCTGTACAGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt Alignment from GeneWise GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagtcgattgatcgttgactctcctagGGGCATCATCAAGCACTCCTGTACAGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtaagagcttcgacaccccacaccatggacaggaggggaaaaaggagggt #### Col17a1_ID10283_39 --> 2 - 1 Original Alignment ggGAAGGCGTACCAGGCCCACCCGGGCCACCAGGA-TCCTTCCTGACTGACTCAg atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagggGAGGGTGTACCAGGCCCACCTGGGCCACCAGGACTCTT-TTTGACTGACTCAggtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from CESAR ggGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagggGAGGGTGTACCAGGCCCACCTGGGCCACCAGGACTCTTTTTGACTGACTCAggtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Spaln_aa2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGACTCTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Spaln_nt2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGACTCTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Pairagon GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGACTCTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Exonerate_protein2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGACTCTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Exonerate_coding2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGACTCTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from GeneWise GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGACTCTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga #### Col17a1_ID10284_38 --> 2 - 1 Original Alignment ggCCTTCCATCCCAGGCCCGCCA-GGACCCAGAGGTCCACCAg agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagggCCTTCCATTCCAGGCCCGCCACGGAC-CCGAAGTCCACCAggtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from CESAR ggCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAg agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagggCCTTCCATTCCAGGCCCGCCACGGACCCGAAGTCCACCAggtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from Spaln_aa2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagGGCCTTCCATTCCAGGCCCGCCACGGACCCGAAGTCCACCAGgtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from Spaln_nt2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagGGCCTTCCATTCCAGGCCCGCCACGGACCCGAAGTCCACCAGgtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from Pairagon GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagGGCCTTCCATTCCAGGCCCGCCACGGACCCGAAGTCCACCAGgtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from Exonerate_protein2genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagGGCCTTCCATTCCAGGCCCGCCACGGACCCGAAGTCCACCAGgtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from Exonerate_coding2genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagGGCCTTCCATTCCAGGCCCGCCACGGACCCGAAGTCCACCAGgtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from GeneWise GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagGGCCTTCCATTCCAGGCCCGCCACGGACCCGAAGTCCACCAGgtaagagctgaactgttttcccataggagggggcaaggacaggggaagca #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGA-GGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagaaGGGGTTGACTTACGTCGGTCCCC-TGGCCCACCTGGACCCCGAGGGCCACCAggtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from CESAR aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagaaGGGGTTGACTTACGTCGGTCCCCTGGCCCACCTGGACCCCGAGGGCCACCAggtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTCGGTCCCCTGGCCCACCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTCGGTCCCCTGGCCCACCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from Pairagon AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTCGGTCCCCTGGCCCACCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from Exonerate_protein2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTCGGTCCCCTGGCCCACCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTCGGTCCCCTGGCCCACCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from GeneWise AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTCGGTCCCCTGGCCCACCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca #### Col17a1_ID10296_26 --> 2 - 1 Original Alignment gtGACAAAGGACTCATG-GGACCACCAGGACCCAAAg ggcaaaccactacaggcttgccacactatttctgttcttctcctctccaggtGACAAGGGACTGATACGGAC-GCCTGGACCCAAAggtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from CESAR gtGACAAAGGACTCATGGGACCACCAGGACCCAAAg ggcaaaccactacaggcttgccacactatttctgttcttctcctctccaggtGACAAGGGACTGATACGGACGCCTGGACCCAAAggtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from Spaln_aa2Genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcttgccacactatttctgttcttctcctctccagGTGACAAGGGACTGATACGGACGCCTGGACCCAAAGgtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from Spaln_nt2Genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcttgccacactatttctgttcttctcctctccagGTGACAAGGGACTGATACGGACGCCTGGACCCAAAGgtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from Pairagon GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcttgccacactatttctgttcttctcctctccagGTGACAAGGGACTGATACGGACGCCTGGACCCAAAGgtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from Exonerate_protein2genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcttgccacactatttctgttcttctcctctccagGTGACAAGGGACTGATACGGACGCCTGGACCCAAAGgtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from Exonerate_coding2genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcttgccacactatttctgttcttctcctctccagGTGACAAGGGACTGATACGGACGCCTGGACCCAAAGgtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from GeneWise GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcttgccacactatttctgttcttctcctctccagGTGACAAGGGACTGATACGGACGCCTGGACCCAAAGgtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAA-GGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaaggtGCTGTGGGTCCCCAACGGGCTCC-AGGTGACGTGGGACTACCTGGTGTCAAAggtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaaggtGCTGTGGGTCCCCAACGGGCTCCAGGTGACGTGGGACTACCTGGTGTCAAAggtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAACGGGCTCCAGGTGACGTGGGACTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAACGGGCTCCAGGTGACGTGGGACTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAACGGGCTCCAGGTGACGTGGGACTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAACGGGCTCCAGGTGACGTGGGACTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from Exonerate_coding2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAACGGGCTCCAGGTGACGTGGGACTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from GeneWise GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAACGGGCTCCAGGTGACGTGGGACTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGCGCAT-CCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGCGCATCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGCGCATCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGCGCATCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGCGCATCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGCGCATCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGCGCATCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGCGCATCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGAC-CTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccaggcTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCCTCA-CTATAATGTGAGCTGGAACCACATTGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccaggcTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCCTCACTATAATGTGAGCTGGAACCACATTGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCCTCACTATAATGTGAGCTGGAACCACATTGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCCTCACTATAATGTGAGCTGGAACCACATTGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCCTCACTATAATGTGAGCTGGAACCACATTGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCCTCACTATAATGTGAGCTGGAACCACATTGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCCTCACTATAATGTGAGCTGGAACCACATTGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctacaagtacatgtctggctaattgaatacctttctgtgttttcaccagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCTGACCCTCACTATAATGTGAGCTGGAACCACATTGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTTCGAATCATTGATCCTAGGCGGGGCACCCTGGTTGCAgtgagtatctccaaagggcaaatagtacaatgtccaaattcagggccttg #### Coro1b_ID355_5 --> 0 - 0 Original Alignment GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTC-ACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCCACCA-GGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from CESAR GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCCACCAGGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from Spaln_aa2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCCACCAGGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from Spaln_nt2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCCACCAGGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from Pairagon GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCCACCAGGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from Exonerate_protein2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCCACCAGGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from Exonerate_coding2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCCACCAGGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca Alignment from GeneWise GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtactaaatagatatattttcctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCCACCAGGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagagatatagcaagactattgcgggcaggtctgtgacctaggcctca #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCAC-TTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCC---CACATCCACCTTCCTGA-TACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCaggtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCACCTTCCTGATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCaggtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCACCTTCCTGATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCACCTTCCTGATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCCC---ACATCCACCTTCCTGATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCACCTTCCTGATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCACCTTCCTGATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCC---CACATCCACCTTCCTGATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCC-GACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcaggTTGGAGGTGACACGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTCGACGACG-GCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcaggTTGGAGGTGACACGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTCGACGACGGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTCGACGACGGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTCGACGACGGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Pairagon GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTC-CGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTCGACGACG-GCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTCGACGACGGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Exonerate_coding2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTCGACGACGGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from GeneWise GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTCGACGACGGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGC-CCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCTGCCCCCC-TGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTGggtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCTGCCCCCCTGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTGggtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCTGCCCCCCTGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCTGCCCCCCTGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCTGCCCCCCTGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCTGCCCCCCTGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCTGCCCCCCTGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCTGCCCCCCTGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCA-GGAAGCACACCCCGGAAG ctcgcttgccacactccaaatcctcagcggcatccctcctacacacacagAGCGCAGAACCACGGAA-CACACCCCGGCAGgtaacttgagttgatgcaggaactgacctggattgcaggaatagagggga Alignment from CESAR AGCGCAGAGCCAGGAAGCACACCCCGGAAG ctcgcttgccacactccaaatcctcagcggcatccctcctacacacacagAGCGCAGAACCACGGAACACACCCCGGCAGgtaacttgagttgatgcaggaactgacctggattgcaggaatagagggga Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG ctcgcttgccacactccaaatcctcagcggcatccctcctacacacacagAGCGCAGAACCACGGAACACACCCCGGCAGgtaacttgagttgatgcaggaactgacctggattgcaggaatagagggga Alignment from Spaln_nt2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG ctcgcttgccacactccaaatcctcagcggcatccctcctacacacacagAGCGCAGAACCACGGAACACACCCCGGCAGgtaacttgagttgatgcaggaactgacctggattgcaggaatagagggga Alignment from Pairagon -----------------------------------------------CAGAGCGCAGAGCCAGGAAGCACACCCCGGAAG CTCGCTTGCCACACTCCAAATCCTCAGCGGCATCCCTCCTACACACACAGAGCGCAGAACCACGGAACACACCCCGGCAGgtaacttgagttgatgcaggaactgacctggattgcaggaatagagggga Alignment from Exonerate_protein2genome ctcgcttgccacactccaaatcctcagcggcatccctcctacacacacagagcgcagaaccacggaacacaccccggcaggtaacttgagttgatgcaggaactgacctggattgcaggaatagagggga Alignment from Exonerate_coding2genome ctcgcttgccacactccaaatcctcagcggcatccctcctacacacacagagcgcagaaccacggaacacaccccggcaggtaacttgagttgatgcaggaactgacctggattgcaggaatagagggga Alignment from GeneWise ctcgcttgccacactccaaatcctcagcggcatccctcctacacacacagagcgcagaaccacggaacacaccccggcaggtaacttgagttgatgcaggaactgacctggattgcaggaatagagggga #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCA-TCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtaagtgatagctcttcttttctctcctctcaccttagagCGACTTGGTCCCCCACGTGATGTCACCGCATCCTGTAACTCTTCCCATTGCACCGTTTCATGGGCCCCACCCTCAACCTGGGCACTCCCTGA-GGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtacccagggcctctcctttttggcaaggcacaagggaggatatgccaag Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtaagtgatagctcttcttttctctcctctcaccttagagCGACTTGGTCCCCCACGTGATGTCACCGCATCCTGTAACTCTTCCCATTGCACCGTTTCATGGGCCCCACCCTCAACCTGGGCACTCCCTGAGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtacccagggcctctcctttttggcaaggcacaagggaggatatgccaag Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtaagtgatagctcttcttttctctcctctcaccttagAGCGACTTGGTCCCCCACGTGATGTCACCGCATCCTGTAACTCTTCCCATTGCACCGTTTCATGGGCCCCACCCTCAACCTGGGCACTCCCTGAGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtacccagggcctctcctttttggcaaggcacaagggaggatatgccaag Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCA-TCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtaagtgatagctcttcttttctctcctctcaccttagAGCGACTTGGTCCCCCACGTGATGTCACCGCATCCTGTAACTCTTCCCATTGCACCGTTTCATGGGCCCCACCCTCAACCTGGGCACTCCCTGA-GGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtacccagggcctctcctttttggcaaggcacaagggaggatatgccaag Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCA-TCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtaagtgatagctcttcttttctctcctctcaccttagAGCGACTTGGTCCCCCACGTGATGTCACCGCATCCTGTAACTCTTCCCATTGCACCGTTTCATGGGCCCCACCCTCAACCTGGGCACTCCCTGA-GGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtacccagggcctctcctttttggcaaggcacaagggaggatatgccaag Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtaagtgatagctcttcttttctctcctctcaccttagAGCGACTTGGTCCCCCACGTGATGTCACCGCATCCTGTAACTCTTCCCATTGCACCGTTTCATGGGCCCCACCCTCAACCTGGGCACTCCCTGAGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtacccagggcctctcctttttggcaaggcacaagggaggatatgccaag Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtaagtgatagctcttcttttctctcctctcaccttagAGCGACTTGGTCCCCCACGTGATGTCACCGCATCCTGTAACTCTTCCCATTGCACCGTTTCATGGGCCCCACCCTCAACCTGGGCACTCCCTGAGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtacccagggcctctcctttttggcaaggcacaagggaggatatgccaag Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtaagtgatagctcttcttttctctcctctcaccttagAGCGACTTGGTCCCCCACGTGATGTCACCGCATCCTGTAACTCTTCCCATTGCACCGTTTCATGGGCCCCACCCTCAACCTGGGCACTCCCTGAGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtacccagggcctctcctttttggcaaggcacaagggaggatatgccaag #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAg gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGC-GAGCTTCGTCAATGAAggtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCGAGCTTCGTCAATGAAggtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTG-ACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagctCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGCACAT-GGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagctCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGCACATGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGCACATGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACC------GTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGCACATGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGCACATGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGCACATGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGCACATGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGCACATGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACA-CTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACCTAG-GGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACCTAGGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACCTAGGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACCTAGGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACCTAGGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACCTAGGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACCTAGGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaggggaggcttggccagtcatgtttcctcttctctctagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACCTAGGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtgagtaagtggtcacctattatttaccctgggtagtaaataattataat #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCC-TCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagagCTCTTGGACTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCCTCCAATG-CTATGCAGCCATAAAGAATCTGggtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from CESAR agCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagagCTCTTGGACTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCCTCCAATGCTATGCAGCCATAAAGAATCTGggtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from Spaln_aa2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCCTCCAATGCTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCCTCCAATGCTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from Pairagon AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCCTCCAATGCTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCCTCCAATGCTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCCTCCAATGCTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga Alignment from GeneWise AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcttagtagtcatcatttttcagAGCTCTTGGACTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCCTCCAATGCTATGCAGCCATAAAGAATCTGGgtgagattgatctggtttggggaagcagcaagtaccacctaattgtagga #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTAC-ATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacaggaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACCATCA-TGATTCAGTGGAGCTGAGTCAGAATGAAAATagtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacaggaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACCATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATagtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACCATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACCATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACCATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACCATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACCATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACCATCATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATC-TCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagagATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCCTCAGTTG-CATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from CESAR agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagagATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCCTCAGTTGCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Spaln_aa2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCCTCAGTTGCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATC-TCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCCTCAGTTG-CATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Pairagon AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTAT-CTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCCTCAGTTG-CATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCCTCAGTTGCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCCTCAGTTGCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from GeneWise AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCCTCAGTTGCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc #### Ctsf_ID685_13 --> 2 - 0 Original Alignment gcTCTAACATTCCTTACTGGGCCATC-AAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG aacaggtgagtgagggtttctggctcatccctgttccatcttccccacaggcTCTAACATTCCTTACTGGGCGATCCAAGAACAGCT-GGGCAGCGACTGGGGCGAGGAGgtaagttttgcccagtcaacctttcacccccctctggcccctcccctacc Alignment from CESAR gcTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG aacaggtgagtgagggtttctggctcatccctgttccatcttccccacaggcTCTAACATTCCTTACTGGGCGATCCAAGAACAGCTGGGCAGCGACTGGGGCGAGGAGgtaagttttgcccagtcaacctttcacccccctctggcccctcccctacc Alignment from Spaln_aa2Genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG aacaggtgagtgagggtttctggctcatccctgttccatcttccccacagGCTCTAACATTCCTTACTGGGCGATCCAAGAACAGCTGGGCAGCGACTGGGGCGAGGAGgtaagttttgcccagtcaacctttcacccccctctggcccctcccctacc Alignment from Spaln_nt2Genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG aacaggtgagtgagggtttctggctcatccctgttccatcttccccacagGCTCTAACATTCCTTACTGGGCGATCCAAGAACAGCTGGGCAGCGACTGGGGCGAGGAGgtaagttttgcccagtcaacctttcacccccctctggcccctcccctacc Alignment from Pairagon GCTCTAACATTCCTTACTGGGCCAT-CAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG aacaggtgagtgagggtttctggctcatccctgttccatcttccccacagGCTCTAACATTCCTTACTGGGCGATCCAAGAACAGCT-GGGCAGCGACTGGGGCGAGGAGgtaagttttgcccagtcaacctttcacccccctctggcccctcccctacc Alignment from Exonerate_protein2genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG aacaggtgagtgagggtttctggctcatccctgttccatcttccccacagGCTCTAACATTCCTTACTGGGCGATCCAAGAACAGCTGGGCAGCGACTGGGGCGAGGAGgtaagttttgcccagtcaacctttcacccccctctggcccctcccctacc Alignment from Exonerate_coding2genome GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG aacaggtgagtgagggtttctggctcatccctgttccatcttccccacagGCTCTAACATTCCTTACTGGGCGATCCAAGAACAGCTGGGCAGCGACTGGGGCGAGGAGgtaagttttgcccagtcaacctttcacccccctctggcccctcccctacc Alignment from GeneWise GCTCTAACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCAGTGACTGGGGTGAGGAG aacaggtgagtgagggtttctggctcatccctgttccatcttccccacagGCTCTAACATTCCTTACTGGGCGATCCAAGAACAGCTGGGCAGCGACTGGGGCGAGGAGgtaagttttgcccagtcaacctttcacccccctctggcccctcccctacc #### Ctsw_ID1020_6 --> 2 - 1 Original Alignment agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCA-TATCTAACTGTCCTCAACAACa tgtgtcaagccatggaacctgctcacctaatccgtcctccctatccccagagCTGTTGGATTGTGAACGCTGTGGCAATGGCTGTAATGATGGCTTTGTATGGGATGCACTATCTAA-TGTCCTCAACAACagtgggttactaggccttatgggagatgagtagggctagtgagtgctcagc Alignment from CESAR agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa tgtgtcaagccatggaacctgctcacctaatccgtcctccctatccccagagCTGTTGGATTGTGAACGCTGTGGCAATGGCTGTAATGATGGCTTTGTATGGGATGCACTATCTAATGTCCTCAACAACagtgggttactaggccttatgggagatgagtagggctagtgagtgctcagc Alignment from Spaln_aa2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggaacctgctcacctaatccgtcctccctatccccagAGCTGTTGGATTGTGAACGCTGTGGCAATGGCTGTAATGATGGCTTTGTATGGGATGCACTATCTAATGTCCTCAACAACAgtgggttactaggccttatgggagatgagtagggctagtgagtgctcagc Alignment from Spaln_nt2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggaacctgctcacctaatccgtcctccctatccccagAGCTGTTGGATTGTGAACGCTGTGGCAATGGCTGTAATGATGGCTTTGTATGGGATGCACTATCTAATGTCCTCAACAACAgtgggttactaggccttatgggagatgagtagggctagtgagtgctcagc Alignment from Pairagon AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCA-TATCTAACTGTCCTCAACAACA tgtgtcaagccatggaacctgctcacctaatccgtcctccctatccccagAGCTGTTGGATTGTGAACGCTGTGGCAATGGCTGTAATGATGGCTTTGTATGGGATGCACTATCTAA-TGTCCTCAACAACAgtgggttactaggccttatgggagatgagtagggctagtgagtgctcagc Alignment from Exonerate_protein2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggaacctgctcacctaatccgtcctccctatccccagAGCTGTTGGATTGTGAACGCTGTGGCAATGGCTGTAATGATGGCTTTGTATGGGATGCACTATCTAATGTCCTCAACAACAgtgggttactaggccttatgggagatgagtagggctagtgagtgctcagc Alignment from Exonerate_coding2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggaacctgctcacctaatccgtcctccctatccccagAGCTGTTGGATTGTGAACGCTGTGGCAATGGCTGTAATGATGGCTTTGTATGGGATGCACTATCTAATGTCCTCAACAACAgtgggttactaggccttatgggagatgagtagggctagtgagtgctcagc Alignment from GeneWise AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggaacctgctcacctaatccgtcctccctatccccagAGCTGTTGGATTGTGAACGCTGTGGCAATGGCTGTAATGATGGCTTTGTATGGGATGCACTATCTAATGTCCTCAACAACAgtgggttactaggccttatgggagatgagtagggctagtgagtgctcagc #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGC-TGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCCTGCTGGG-CATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGggtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcagag Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCCTGCTGGGCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGggtgtgtggggttggacatgtgtcaagccatggaacctgctcacctaatcc Alignment from Spaln_aa2Genome GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCCTGCTGGGCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcagag Alignment from Spaln_nt2Genome GGAAGCTGCAA---------------------------ATGC-TGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCCTGCTGGG-CATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcagag Alignment from Pairagon GGAAGCTGCAA---------------------------ATG-CTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCCTGCTGGG-CATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcagag Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagagaagttgcaaccatttccccggcccaTGGATCGGTGTATGCCTGCTGGGCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcagag Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagagaagttgcaaccatttccccggcccaTGGATCGGTGTATGCCTGCTGGGCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcagag Alignment from GeneWise GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCCTGCTGGGCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcacctcagag #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCT-CAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagagTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTC-AAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCggtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagagTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCggtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCT-CAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTC-AAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCCAGGCTCAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTG-CAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG agtccagccccggagctgagggggactcttgctttatctttcctccccagCGGAGGAAGTTTCTGCCAGATGAAGC-CAGGAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtgagtatcagcaggccaccccttggccggcagggcgacttcatcctatg Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG agtccagccccggagctgagggggactcttgctttatctttcctccccagCGGAGGAAGTTTCTGCCAGATGAAGCCAGGAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtgagtatcagcaggccaccccttggccggcagggcgacttcatcctatg Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG agtccagccccggagctgagggggactcttgctttatctttcctccccagCGGAGGAAGTTTCTGCCAGATGAAGCCAGGAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtgagtatcagcaggccaccccttggccggcagggcgacttcatcctatg Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG agtccagccccggagctgagggggactcttgctttatctttcctccccagCGGAGGAAGTTTCTGCCAGATGAAGCCAGGAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtgagtatcagcaggccaccccttggccggcagggcgacttcatcctatg Alignment from Pairagon CGGAGGAAGTTTCTG-CAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG agtccagccccggagctgagggggactcttgctttatctttcctccccagCGGAGGAAGTTTCTGCCAGATGAAGC-CAGGAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtgagtatcagcaggccaccccttggccggcagggcgacttcatcctatg Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG agtccagccccggagctgagggggactcttgctttatctttcctccccagCGGAGGAAGTTTCTGCCAGATGAAGCCAGGAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtgagtatcagcaggccaccccttggccggcagggcgacttcatcctatg Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG agtccagccccggagctgagggggactcttgctttatctttcctccccagCGGAGGAAGTTTCTGCCAGATGAAGCCAGGAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtgagtatcagcaggccaccccttggccggcagggcgacttcatcctatg Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG agtccagccccggagctgagggggactcttgctttatctttcctccccagCGGAGGAAGTTTCTGCCAGATGAAGCCAGGAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtgagtatcagcaggccaccccttggccggcagggcgacttcatcctatg #### Cyp26a1_ID7418_6 --> 0 - 0 Original Alignment GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAG-GAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tttggagtacacagggatcccatcactccgttcccacattgcatacacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGCGAGACCC-GCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccaccacacccagcccttgctctcgtccactct Alignment from CESAR GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tttggagtacacagggatcccatcactccgttcccacattgcatacacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGCGAGACCCGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccaccacacccagcccttgctctcgtccactct Alignment from Spaln_aa2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tttggagtacacagggatcccatcactccgttcccacattgcatacacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGCGAGACCCGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccaccacacccagcccttgctctcgtccactct Alignment from Spaln_nt2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tttggagtacacagggatcccatcactccgttcccacattgcatacacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGCGAGACCCGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccaccacacccagcccttgctctcgtccactct Alignment from Pairagon GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAG-GAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tttggagtacacagggatcccatcactccgttcccacattgcatacacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGCGAGACCC-GCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccaccacacccagcccttgctctcgtccactct Alignment from Exonerate_protein2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tttggagtacacagggatcccatcactccgttcccacattgcatacacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGCGAGACCCGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccaccacacccagcccttgctctcgtccactct Alignment from Exonerate_coding2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tttggagtacacagggatcccatcactccgttcccacattgcatacacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGCGAGACCCGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccaccacacccagcccttgctctcgtccactct Alignment from GeneWise GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tttggagtacacagggatcccatcactccgttcccacattgcatacacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGCGAGACCCGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccaccacacccagcccttgctctcgtccactct #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTC-TCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtccctaggaggtactctatagctgacggacttcttttttaaggcCTTACATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCCTCACTCA-GCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATggtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtccctaggaggtactctatagctgacggacttcttttttaaggcCTTACATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCCTCACTCAGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATggtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCCTCACTCAGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCCTCACTCAGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCG-TTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCCTCACTCA-GCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCCTCACTCAGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCCTCACTCAGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCCTCACTCAGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGG-CGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aaaagattgcagagcccaactctgtctatgcctccattctccccacccaggaATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCCGCTTCT-ACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aaaagattgcagagcccaactctgtctatgcctccattctccccacccaggaATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCCGCTTCTACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCCGCTTCTACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCCGCTTCTACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGG-CGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCCGCTTCT-ACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCCGCTTCTACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCCGCTTCTACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCCGCTTCTACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAAT-TTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtataacaaggtttcactaacacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCA-GGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtataacaaggtttcactaacacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCAGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCAGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCAGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAAT-TTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCA-GGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCAGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCAGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCAGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct #### Dagla_ID2759_11 --> 0 - 0 Original Alignment GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTC-CCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCCTGTGGAGG-ACACAGAGGCACCTGGTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from CESAR GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCCTGTGGAGGACACAGAGGCACCTGGTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from Spaln_aa2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCCTGTGGAGGACACAGAGGCACCTGGTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from Spaln_nt2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCCTGTGGAGGACACAGAGGCACCTGGTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from Pairagon GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCC-TCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCCTGTGGA-GGACACAGAGGCACCTGGTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from Exonerate_protein2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCCTGTGGAGGACACAGAGGCACCTGGTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from Exonerate_coding2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCCTGTGGAGGACACAGAGGCACCTGGTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from GeneWise GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCCTGTGGAGGACACAGAGGCACCTGGTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCCTTCTACGTAGCTGTG-GACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctggggtcacaccacctcatgcaatttctttgacagGTCTATGAGACTCCCTTTTACGTAGCTGTTCGACCATG-TAAGAAGAAAGTGGTGATCAGTATCCGGGGAACTCTGTCCCCTAAGgtgagagcacatgcatctactccacaggctccagtacttgctgtccttgt Alignment from CESAR GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctggggtcacaccacctcatgcaatttctttgacagGTCTATGAGACTCCCTTTTACGTAGCTGTTCGACCATGTAAGAAGAAAGTGGTGATCAGTATCCGGGGAACTCTGTCCCCTAAGgtgagagcacatgcatctactccacaggctccagtacttgctgtccttgt Alignment from Spaln_aa2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctggggtcacaccacctcatgcaatttctttgacagGTCTATGAGACTCCCTTTTACGTAGCTGTTCGACCATGTAAGAAGAAAGTGGTGATCAGTATCCGGGGAACTCTGTCCCCTAAGgtgagagcacatgcatctactccacaggctccagtacttgctgtccttgt Alignment from Spaln_nt2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctggggtcacaccacctcatgcaatttctttgacagGTCTATGAGACTCCCTTTTACGTAGCTGTTCGACCATGTAAGAAGAAAGTGGTGATCAGTATCCGGGGAACTCTGTCCCCTAAGgtgagagcacatgcatctactccacaggctccagtacttgctgtccttgt Alignment from Pairagon GTCTATGAAACTCCCTTCTACGTAGCTG-TGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctggggtcacaccacctcatgcaatttctttgacagGTCTATGAGACTCCCTTTTACGTAGCTGTTCGACCATG-TAAGAAGAAAGTGGTGATCAGTATCCGGGGAACTCTGTCCCCTAAGgtgagagcacatgcatctactccacaggctccagtacttgctgtccttgt Alignment from Exonerate_protein2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctggggtcacaccacctcatgcaatttctttgacagGTCTATGAGACTCCCTTTTACGTAGCTGTTCGACCATGTAAGAAGAAAGTGGTGATCAGTATCCGGGGAACTCTGTCCCCTAAGgtgagagcacatgcatctactccacaggctccagtacttgctgtccttgt Alignment from Exonerate_coding2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctggggtcacaccacctcatgcaatttctttgacagGTCTATGAGACTCCCTTTTACGTAGCTGTTCGACCATGTAAGAAGAAAGTGGTGATCAGTATCCGGGGAACTCTGTCCCCTAAGgtgagagcacatgcatctactccacaggctccagtacttgctgtccttgt Alignment from GeneWise GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctggggtcacaccacctcatgcaatttctttgacagGTCTATGAGACTCCCTTTTACGTAGCTGTTCGACCATGTAAGAAGAAAGTGGTGATCAGTATCCGGGGAACTCTGTCCCCTAAGgtgagagcacatgcatctactccacaggctccagtacttgctgtccttgt #### Dak_ID2898_15 --> 1 - 0 Original Alignment gTATGGAAAGGCT-GCACCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtaggTATGGAAAGGCTCGCACCAG-AGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggcta Alignment from CESAR gTATGGAAAGGCTGCACCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtaggTATGGAAAGGCTCGCACCAGAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggctc Alignment from Spaln_aa2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtagGTATGGAAAGGCTCGCACCAGAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggcta Alignment from Spaln_nt2Genome GTATGGAAAGGCT-GCACCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtagGTATGGAAAGGCTCGCACCA-GAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggcta Alignment from Pairagon GTATGGAAAGGCT-GCACCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtagGTATGGAAAGGCTCGCACCA-GAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggcta Alignment from Exonerate_protein2genome GTATGGAAAG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtaggtatggaaaggctcgcaccagagacaggacaatggtaagttccccttccccctttgagcctccctaagtgtcagG---GCTTGG Alignment from Exonerate_coding2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtagGTATGGAAAGGCTCGCACCAGAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggcta Alignment from GeneWise -AAGTATGGAAAGGCT acttggctcctgtgtctacacctaaagattgcttggctttctccctgtaggtatggaaaggctcgcaccagagacaggacaatggtaagttccccttccccctttgagcctccctaagTGTCAGGGCTTGGCTA #### Dak_ID2899_14 --> 0 - 2 Original Alignment CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCC-GGCTTAGAGTCCATGCAGaa tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCCGGCC-AGAGTCCATGCAGaagtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from CESAR CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCCGGCCAGAGTCCATGCAGaagtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from Spaln_aa2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCCGGCCAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from Spaln_nt2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCCGGCCAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from Pairagon CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCCGGCCAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from Exonerate_protein2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCCGGCCAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from Exonerate_coding2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCCGGCCAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from GeneWise CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCCGGCCAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCA-TCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagccATTCAGGGGTGGCTGAAGGAAGGCCCACTCTC-AACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagccATTCAGGGGTGGCTGAAGGAAGGCCCACTCTCAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCACTCTCAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCACTCTCAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCACTCTCAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCACTCTCAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCACTCTCAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCACTCTCAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc #### Dak_ID2902_11 --> 2 - 1 Original Alignment atGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCT-GTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagatGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTCGTGACTGGGA-GAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAggtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from CESAR atGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCT-GTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagatGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTCGTGACTGGGA-GAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAggtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Spaln_aa2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTCGTGACTGGGAGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Spaln_nt2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCT-GTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTCGTGACTGGGA-GAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Pairagon ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCT-GTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTCGTGACTGGGA-GAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Exonerate_protein2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTCGTGACTGGGAGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Exonerate_coding2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCC---TATGGCCAAGGTCTCTCGTGACTGGGAGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from GeneWise ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTCGTGACTGGGAGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAG-GTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag cagctcttgccctgttttctttccttcttctttgcctttttgtgggacaggtTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGCGTGAACT-TATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag cagctcttgccctgttttctttccttcttctttgcctttttgtgggacaggtTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGCGTGAACTTATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGCGTGAACTTATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGCGTGAACTTATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAG-GTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGCGTGAACT-TATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGCGTGAACTTATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGCGTGAACTTATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGCGTGAACTTATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta #### Ddb1_ID2932_17 --> 1 - 2 Original Alignment tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATC-CAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tatcctttattgttaacttactcaatacttttcttttgttttgaaattagtCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGC-CCACATTCGCACAGTTCCCCTCTACGAGTCTCCCaggtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from CESAR tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tatcctttattgttaacttactcaatacttttcttttgttttgaaattagtCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCaggtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from Spaln_aa2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from Spaln_nt2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from Pairagon TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGAT-CCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGC-CCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from Exonerate_protein2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from Exonerate_coding2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from GeneWise TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCT-GAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagtgCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTCGAAGAGG-AGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATggtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagtgCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTCGAAGAGGAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATggtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTCGAAGAGGAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTCGAAGAGGAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCT-GAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTCGAAGAGG-AGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTCGAAGAGGAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTCGAAGAGGAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTCGAAGAGGAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTC-TTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagtGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCCTTCCACC-GGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAggtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagtGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCCTTCCACCGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAggtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCCTTCCACCGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCCTTCCACCGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCCTTCCACCGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCCTTCCACCGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCCTTCCACCGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCCTTCCACCGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag #### Dpf2_ID1304_9 --> 2 - 0 Original Alignment ggCATCCGTCCTGCCTGCAGTTCACC-CCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagggCATCCATCCTGCCTGCAGTTCACCCCCTGTGA-GATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from CESAR ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagggCATCCATCCTGCCTGCAGTTCACCCCCTGTGAGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Spaln_aa2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCCTGTGAGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Spaln_nt2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCCTGTGAGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Pairagon GGCATCCGTCCTGCCTGCAGTTCA-CCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCCTGTGA-GATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Exonerate_protein2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCCTGTGAGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Exonerate_coding2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCCTGTGAGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from GeneWise GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCCTGTGAGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGAT-GGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagccAAGAAAGGACCTGATCGGATTGGCCC-GCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagccAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Pairagon CCAAGAAAGGACCTGAT-GGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATCGGATTGGCCC-GCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATCGGATTGGCCCGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct #### Dpf2_ID1309_5 --> 0 - 0 Original Alignment CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAA-GATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAACGATACAC-AAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaagtacatcatcatcacaatcgatttctccatagAGTAAGGGTGTGAG Alignment from CESAR CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAACGATACACAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaagtacatcatccaatctcatcctcatgtcttagAGTAAGGGTGTGAG Alignment from Spaln_aa2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAACGATACACAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaagtacatcatcatcacaatcgatttctccatagAGTAAGGGTGTGAG Alignment from Spaln_nt2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAACGATACACAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaagtacatcatcatcacaatcgatttctccatagAGTAAGGGTGTGAG Alignment from Pairagon CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAA-GATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAACGATACA-CAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaagtacatcatcatcacaatcgatttctccatagAGTAAGGGTGTGAG Alignment from Exonerate_protein2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAACGATACACAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaagtacatcatcatcacaatcgatttctccatagAGTAAGGGTGTGAG Alignment from Exonerate_coding2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAACGATACACAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaagtacatcatcatcacaatcgatttctccatagAGTAAGGGTGTGAG Alignment from GeneWise CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAACGATACACAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaagtacatcatcatcacaatcgatttctccatagAGTAAGGGTGTGAG #### Dpp3_ID739_14 --> 1 - 0 Original Alignment gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAG-GCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccaggATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGCGCAG-CAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from CESAR gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccaggATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGCGCAGCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Spaln_aa2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGCGCAGCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Spaln_nt2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAG-GCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGCGCAG-CAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Pairagon GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGCGCAGCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Exonerate_protein2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGCGCAGCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Exonerate_coding2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGCGCAGCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from GeneWise GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCAGCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGCGCAGCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGT-CTCAACCCCCAAGTGCTGga tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCA-CCCCCAAGTGTTGgagtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCACCCCCAAGTGTTGgagtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Exonerate_coding2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTT-AAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagacGATGACCTGAGACAGACAGAAGGCTTTCAAGA-TGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagacGATGACCTGAGACAGACAGAAGGCTTTCAAGATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTCAAGATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTCAAGATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTCAAGATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTCAAGATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTCAAGATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTCAAGATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg #### Drap1_ID985_5 --> 1 - 0 Original Alignment ag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGC-ACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG aggtgagtagccaagacatggtctgcagtgtgcatttccctttgattcaggGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCCACAGGAA-CAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from CESAR ag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG aggtagaaagccaagacatggtctgcagtgtgcatttccctttgattcaggGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCCACAGGAACAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Spaln_aa2Genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCCACAGGAACAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Spaln_nt2Genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCCACAGGAACAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Pairagon AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCCACAGGAACAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Exonerate_protein2genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCCACAGGAACAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Exonerate_coding2genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCCACAGGAACAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from GeneWise AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCCACAGGAACAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAG-CAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gG caagtgtttgaggggccttatttggacctaccccatttccttccttgcaggAAGCAGTGCATTGAACTTGAGCAGCCAGTTTG-CTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGACAAGGGTCCTCGAaggtagaaagccaagacatggtctgcagtttatcccatttgtttctcaaggG Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gG caagtgtttgaggggccttatttggacctaccccatttccttccttgcaggAAGCAGTGCATTGAACTTGAGCAGCCAGTTTGCTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGACAAGGGTCCTCGAaggtagaaagccaagacatggtctgcagtgtgcatttccctttgattcaggG Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccttatttggacctaccccatttccttccttgcagGAAGCAGTGCATTGAACTTGAGCAGCCAGTTTGCTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGACAAGGGTCCTCGAAGgtagaaagccaagacatggtctgcagtttatcccatttgtttctcaagGG Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccttatttggacctaccccatttccttccttgcagGAAGCAGTGCATTGAACTTGAGCAGCCAGTTTGCTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGACAAGGGTCCTCGAAGgtagaaagccaagacatggtctgcagtttatcccatttgtttctcaagGG Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAG-CAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccttatttggacctaccccatttccttccttgcagGAAGCAGTGCATTGAACTTGAGCAGCCAGTTTG-CTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGACAAGGGTCCTCGAAGgtagaaagccaagacatggtctgcagtttatcccatttgtttctcaagGG Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccttatttggacctaccccatttccttccttgcagGAAGCAGTGCATTGAACTTGAGCAGCCAGTTTGCTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGACAAGGGTCCTCGAAGgtagaaagccaagacatggtctgcagtttatcccatttgtttctcaagGG Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccttatttggacctaccccatttccttccttgcagGAAGCAGTGCATTGAACTTGAGCAGCCAGTTTGCTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGACAAGGGTCCTCGAAGgtagaaagccaagacatggtctgcagtttatcccatttgtttctcaagGG Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccttatttggacctaccccatttccttccttgcagGAAGCAGTGCATTGAACTTGAGCAGCCAGTTTGCTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGACAAGGGTCCTCGAAGgtagaaagccaagacatggtctgcagtttatcccatttgtttctcaagGG #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGC-CAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggggtgggactacagcactccacttttctgttaacacccacttgccctagccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGG-GACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACctgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggggtgggactacagcactccacttttctgttaacacccacttgccctagccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACctgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGG-GTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagtaAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGCGTCAGCT-TGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagtaAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGCGTCAGCTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGCGTCAGCTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGCGTCAGCTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGG-GTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGCGTCAGC-TTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGCGTCAGCTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGCGTCAGCTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGCGTCAGCTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAG-TTGGGACCTAACAACCGCTCTTGTGTGg aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagacATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGCTTGGGAC-TAACAACCGCTCTTGTGTGggtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagacATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGCTTGGGACTAACAACCGCTCTTGTGTGggtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGCTTGGGACTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGCTTGGGACTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from Pairagon ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGCTTGGGACTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGCTTGGGACTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGCTTGGGACTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGCTTGGGACTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTG-GAGCCCTATGTCCAAGTGTCAGACaa acttactatgagtactatactagacccccacaactagcctctttcctcagatATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTTGTGTGCGAGC-CTATGTCCAAGTGTCAGACaagtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttactatgagtactatactagacccccacaactagcctctttcctcagatATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTTGTGTGCGAGCCTATGTCCAAGTGTCAGACaagtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTTGTGTGCGAGCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTTGTGTGCGAGCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Pairagon ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTTGTGTGCGAGCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTTGTGTGCGAGCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTTGTGTGCGAGCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTTGTGTGCGAGCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg #### Ehbp1l1_ID1228_7 --> 2 - 1 Original Alignment atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCAC-ATACGGCCCCAGCAGGCAg aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagatCTGTCTCGAGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACCATAC-TCCCCAGCAGTCAagtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from CESAR atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagatCTGTCTCGAGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACCATACTCCCCAGCAGTCAagtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from Spaln_aa2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACCATACTCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from Spaln_nt2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCAC-ATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACCATAC-TCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from Pairagon ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCA-CATACGGCCCCAGCAGGC---------------------------------------------------- aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACCATAC-TCCCCAGCAGTCAAGTTTGTCCTGGCCTGGGAATGGGGTTGCAGACTGAACCTACATAACGATG Alignment from Exonerate_protein2genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACCATACTCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from Exonerate_coding2genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACCATACTCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from GeneWise ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACCATACTCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg #### Ehbp1l1_ID1229_6 --> 1 - 1 Original Alignment gGATGATGACATGCAG-AGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg tggcttgtgacctgtgagcccagcccttcctggtgtcctgtcctttgcaggGATGATGACATGCAACAGTCTGGCCA-CCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGATGATTTTGCTGAGAGTGATGAGGAGGAAGCTAACGGCCCTGGGGCTCCCGAGGTCCAGACTCGAGGCCCCCAGTCAggtgagttcacagttgggctgacctgccagtacctgagatggatgcaactt Alignment from CESAR gGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg tggcttgtgacctgtgagcccagcccttcctggtgtcctgtcctttgcaggGATGATGACATGCAACAGTCTGGCCACCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGATGATTTTGCTGAGAGTGATGAGGAGGAAGCTAACGGCCCTGGGGCTCCCGAGGTCCAGACTCGAGGCCCCCAGTCAggtgagttcacagttgggctgacctgccagtacctgagatggatgcaactt Alignment from Spaln_aa2Genome GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tggcttgtgacctgtgagcccagcccttcctggtgtcctgtcctttgcagGGATGATGACATGCAACAGTCTGGCCACCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGATGATTTTGCTGAGAGTGATGAGGAGGAAGCTAACGGCCCTGGGGCTCCCGAGGTCCAGACTCGAGGCCCCCAGTCAGgtgagttcacagttgggctgacctgccagtacctgagatggatgcaactt Alignment from Spaln_nt2Genome GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tggcttgtgacctgtgagcccagcccttcctggtgtcctgtcctttgcagGGATGATGACATGCAACAGTCTGGCCACCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGATGATTTTGCTGAGAGTGATGAGGAGGAAGCTAACGGCCCTGGGGCTCCCGAGGTCCAGACTCGAGGCCCCCAGTCAGgtgagttcacagttgggctgacctgccagtacctgagatggatgcaactt Alignment from Pairagon GGATGATGACATGCAG-AGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tggcttgtgacctgtgagcccagcccttcctggtgtcctgtcctttgcagGGATGATGACATGCAACAGTCTGGCCA-CCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGATGATTTTGCTGAGAGTGATGAGGAGGAAGCTAACGGCCCTGGGGCTCCCGAGGTCCAGACTCGAGGCCCCCAGTCAGgtgagttcacagttgggctgacctgccagtacctgagatggatgcaactt Alignment from Exonerate_protein2genome GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tggcttgtgacctgtgagcccagcccttcctggtgtcctgtcctttgcagGGATGATGACATGCAACAGTCTGGCCACCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGATGATTTTGCTGAGAGTGATGAGGAGGAAGCTAACGGCCCTGGGGCTCCCGAGGTCCAGACTCGAGGCCCCCAGTCAGgtgagttcacagttgggctgacctgccagtacctgagatggatgcaactt Alignment from Exonerate_coding2genome GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tggcttgtgacctgtgagcccagcccttcctggtgtcctgtcctttgcagGGATGATGACATGCAACAGTCTGGCCACCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGATGATTTTGCTGAGAGTGATGAGGAGGAAGCTAACGGCCCTGGGGCTCCCGAGGTCCAGACTCGAGGCCCCCAGTCAGgtgagttcacagttgggctgacctgccagtacctgagatggatgcaactt Alignment from GeneWise GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tggcttgtgacctgtgagcccagcccttcctggtgtcctgtcctttgcagGGATGATGACATGCAACAGTCTGGCCACCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGATGATTTTGCTGAGAGTGATGAGGAGGAAGCTAACGGCCCTGGGGCTCCCGAGGTCCAGACTCGAGGCCCCCAGTCAGgtgagttcacagttgggctgacctgccagtacctgagatggatgcaactt #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCA-GGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCACGGGC-TGTACCTGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCacgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCACGGGCTGTACCTGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCacgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCACGGGCTGTACCTGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCACGGGCTGTACCTGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGG---GCTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCACGGGCTGTACCTGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGG---GCTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from Exonerate_protein2genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCACGGGCTGTACCTGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from Exonerate_coding2genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCACGGGCTGTACCTGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactacctatcttctcacttcccagcctccatgccattcctgcagGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACTTAGACCATCACGCACGGGCTGTACCTGCCCAGATTTCACTTCGACTGCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAGCTGAGCCTCACCCTTGCTGGG---CTGCTGCAAGAAGGCCGTGCCACgtatgcacacaccaatcctctactgcgctccctggcttgtgacctgtgag #### Ehbp1l1_ID1231_4 --> 0 - 0 Original Alignment GACCCTCATGTG-GACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGCGACCAGTACG-AACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from CESAR GACCCTCATGTG-GACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGCGACCAGTACG-AACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from Spaln_aa2Genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGCGACCAGTACGAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from Spaln_nt2Genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGCGACCAGTACGAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from Pairagon GACCCTCATGTG-GACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGCGACCAGTACG-AACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from Exonerate_protein2genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGCGACCAGTACGAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from Exonerate_coding2genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGCGACCAGTACGAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from GeneWise GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGCGACCAGTACGAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt #### Ehbp1l1_ID1232_3 --> 0 - 0 Original Alignment GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTT-CCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCCTG-GAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from CESAR GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCCTGGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from Spaln_aa2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCCTGGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from Spaln_nt2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCCTGGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from Pairagon GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCCTGGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from Exonerate_protein2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCCTGGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from Exonerate_coding2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCCTGGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from GeneWise GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCCTGGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAAC-AATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACCAATCTGC-TGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAggtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACCAATCTGCTGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAggtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACCAATCTGCTGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACCAATCTGCTGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from Pairagon GTCCTCAGGACTCCTGGGAA-CAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACCAATCTGC-TGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACCAATCTGCTGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACCAATCTGCTGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACCAATCTGCTGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta #### Eif3a_ID13316_14 --> 0 - 0 Original Alignment ATTGACTATTTTGAGAGAGCTAAG-CGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCCGCTTGG-GGAAATTCCTTTGATAAAGAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from CESAR ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCCGCTTGGGGAAATTCCTTTGATAAAGAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from Spaln_aa2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCCGCTTGGGGAAATTCCTTTGATAAAGAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from Spaln_nt2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCCGCTTGGGGAAATTCCTTTGATAAAGAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from Pairagon ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCCGCTTGGGGAAATTCCTTTGATAAAGAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from Exonerate_protein2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCCGCTTGGGGAAATTCCTTTGATAAAGAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from Exonerate_coding2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCCGCTTGGGGAAATTCCTTTGATAAAGAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from GeneWise ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCCGCTTGGGGAAATTCCTTTGATAAAGAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAA-GAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAACGAAAAAA-GGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAACGAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAACGAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAACGAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAACGAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAACGAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAACGAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAACGAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGC-ATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTCATGCCTTCAG-ACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTCATGCCTTCAGACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTCATGCCTTCAGACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTCATGCCTTCAGACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAG-CATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTCATGCCTTCAGA-CAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTCATGCCTTCAGACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTCATGCCTTCAGACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTCATGCCTTCAGACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAA-GAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAACGAAGAGT-CCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAACGAAGAGTCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAACGAAGAGTCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAACGAAGAGTCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAA-GAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAACGAAGAGT-CCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAACGAAGAGTCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAACGAAGAGTCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAACGAAGAGTCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGG-GCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGCGCAG-CTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACacgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGCGCAGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACacgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGCGCAGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGCGCAGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGCGCAGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGCGCAGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGCGCAGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGCGCAGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGC-ATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt tgctctggggcctccaagaaggaggcttactctgctgtctttccttgcagaaGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCCATCCGAAGTC-TGAGGAGCTGCCTAGTGGCCCACCACCAGAGACCCTGACCCTCGACTGGgtgtaagttattaagaactgtgggaatcacccccacccacaatgggtaccct Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt tgctctggggcctccaagaaggaggcttactctgctgtctttccttgcagaaGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCCATCCGAAGTCTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACCCTGACCCTCGACTGGgtgtaagttattaagaactgtgggaatcacccccacccacaatgggtaccct Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttactctgctgtctttccttgcagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCCATCCGAAGTCTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACCCTGACCCTCGACTGGGTgtaagttattaagaactgtgggaatcacccccacccacaatgggtaccct Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttactctgctgtctttccttgcagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCCATCCGAAGTCTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACCCTGACCCTCGACTGGGTgtaagttattaagaactgtgggaatcacccccacccacaatgggtaccct Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGG-CATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttactctgctgtctttccttgcagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCCATCCGAAGTC-TGAGGAGCTGCCTAGTGGCCCACCACCAGAGACCCTGACCCTCGACTGGGTgtaagttattaagaactgtgggaatcacccccacccacaatgggtaccct Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttactctgctgtctttccttgcagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCCATCCGAAGTCTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACCCTGACCCTCGACTGGGTgtaagttattaagaactgtgggaatcacccccacccacaatgggtaccct Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttactctgctgtctttccttgcagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCCATCCGAAGTCTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACCCTGACCCTCGACTGGGTgtaagttattaagaactgtgggaatcacccccacccacaatgggtaccct Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttactctgctgtctttccttgcagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCCATCCGAAGTCTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACCCTGACCCTCGACTGGGTgtaagttattaagaactgtgggaatcacccccacccacaatgggtaccct #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGAC-TCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAG-GACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGG-GCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGACGCCATTG-TGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgactcctctctgcctctctccagGGACACACTGACGAGCTC Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGACGCCATTGTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgatgttttcatatccacttttagGGACACACTGACGAGCTC Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGACGCCATTGTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGGTAAGGACTGACTCCTCTCTGCCTCTCtcCAGGGACACACTGACGAGCTC Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTA--------------------------------TCCAGGGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGACGCCATTGTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGGTAAGGACTGACTCCTCTCTGCCTCTCTCCAGGGACACACTGACGAGCTC Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGG-GCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGACGCCATTG-TGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgactcctctctgcctctctccagGGACACACTGACGAGCTC Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGACGCCATTGTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgactcctctctgcctctctccagGGACACACTGACGAGCTC Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGACGCCATTGTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgactcctctctgcctctctccagGGACACACTGACGAGCTC Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGACGCCATTGTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgactcctctctgcctctctccagGGACACACTGACGAGCTC #### Eml3_ID2518_17 --> 1 - 1 Original Alignment gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAA-CAGCTCTCAGTTGTCCGGTACAGCCCAg aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccaggTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACCAGC-CTCAGTTGTCCGGTACAGCCCAggtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from CESAR gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccaggTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACCAGCCTCAGTTGTCCGGTACAGCCCAggtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from Spaln_aa2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACCAGCCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from Spaln_nt2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACCAGCCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from Pairagon GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACCAGCCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from Exonerate_protein2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACCAGCCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from Exonerate_coding2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACCAGCCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from GeneWise GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACCAGCCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGAC-CGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcaggTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCCGAAATG-GGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcaggTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCCGAAATGGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCCGAAATGGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCCGAAATGGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCCGAAATGGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCCGAAATGGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCCGAAATGGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCCGAAATGGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCAC-CATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCCATGCCA-ACCCAACATCTTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCCATGCCAACCCAACATCTTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCCATGCCAACCCAACATCTTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCCATGCCAACCCAACATCTTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCA-CCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCCATGCC-AACCCAACATCTTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCCATGCCAACCCAACATCTTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCCATGCCAACCCAACATCTTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgcaagtaggagttttgtcccccacagctaagggggcctaatggagactga Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG--------------- ccaggctggagcacagcataactcggcccccaagttcttttttattgaagGACTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCCATGCCAACCCAACATCTTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGGCAAGTAGGAGTTTTgtcccccacagctaagggggcctaatggagactga #### Fads3_ID2664_7 --> 2 - 0 Original Alignment ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTT-GAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagttGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTCGAAA-TCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from CESAR ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagttGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTCGAAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from Spaln_aa2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTCGAAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from Spaln_nt2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTCGAAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from Pairagon TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTCGAAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from Exonerate_protein2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTCGAAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from Exonerate_coding2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTCGAAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from GeneWise TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTCGAAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTG-CTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCCTTC-CTTTGTTGCTGTCaggtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCCTTCCTTTGTTGCTGTCaggtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCCTTCCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCCTTCCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCCTTCCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCCTTCCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCCTTCCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcatggatttttgttaaattttatttcagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTGCCTTCCTTTGTTGCTGTCAGgtatggccagactcagagtgattgggagttaggaggcctcacaaccatgg #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTCGTGTGGATC-ACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcaggGTGCTGGAGAGCCACTGGTTCGTGTGGATCCACACAGATGA-CCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcaggGTGCTGGAGAGCCACTGGTTCGTGTGGATCCACACAGATGACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCCACACAGATGACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCCACACAGATGACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from Pairagon GGTGCTGGAGAGCCACTGGTTCGTGTGGAT-CACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCCACACAGATG-ACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCCACACAGATGACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCCACACAGATGACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaacctaatcaaggatgctgtctctactacttctattgatcagGGTGCTGGAGAGCCACTGGTTCGTGTGGATCCACACAGATGACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGgtatgtactgggaagcctgatgggagtatatactagccatggagtgacca #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTT-TTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTCTTAGTAC-CTATACCAAGCTTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTCTTAGTACCTATACCAAGCTTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTCTTAGTACCTATACCAAGCTTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTCTTAGTACCTATACCAAGCTTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTCTTAGTACCTATACCAAGCTTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTCTTAGTACCTATACCAAGCTTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTCTTAGTACCTATACCAAGCTTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTCTTAGTACCTATACCAAGCTTCTGGAACGAATCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCCAAAGCCA-CCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGacgtatgtgtcctctcactttgcagaactaaccatgctgtatgtttttacat Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCCAAAGCCACCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGacgtatgtgtcctctcactttgcagaactaaccatgctgtaatcttcatttc Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCCAAAGCCACCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatgtttttacat Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCCAAAGCCACCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatgtttttacat Alignment from Pairagon ACTGCTGCTGTTGCTCTCG-CCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCCAAAGCCA-CCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatgtttttacat Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCCAAAGCCACCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatgtttttacat Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCCAAAGCCACCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatgtttttacat Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCCAAAGCCACCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatgtttttacat #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTG-ACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagcTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGCACCTCGGACG-CCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagcTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGCACCTCGGACGCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGCACCTCGGACGCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGCACCTCGGACGCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTG-ACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGCACCTCGGACG-CCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGCACCTCGGACGCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGCACCTCGGACGCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGCACCTCGGACGCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCAT-CCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagaGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCCA-AAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACaggtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagaGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCCAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACaggtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCCAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCCAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCCAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCCAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCCAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcataataagtggtgctacgcctcatgctcctacctctagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCCAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaacgcacatgattgcggtgagtgtgtcatgcatttgagctgggctgct #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTATGGTTGTTG-ACCATCCTTGTTTTGTTAATTCCACTTg cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccaggtCCCAGAAATTGCCTATGGTTGTTGCACCATCC-TGTTTTGTTGATTCCACTTggtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTg cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccaggtCCCAGAAATTGCCTATGGTTGTTGCACCATCCTGTTTTGTTGATTCCACTTggtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCCTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCCTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from Pairagon GTCCCAGAAATCGCCTATGGTTGTTG-ACCATCCTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCC-TGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from Exonerate_protein2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCCTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCCTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGCACCATCCTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag #### Fau_ID1402_2 --> 0 - 1 Original Alignment GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTA-GAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTACGAGGCCC-GACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAggtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from CESAR GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTACGAGGCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAggtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Spaln_aa2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTACGAGGCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Spaln_nt2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTACGAGGCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Pairagon GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTACGAGGCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Exonerate_protein2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTACGAGGCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Exonerate_coding2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTACGAGGCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from GeneWise GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTACGAGGCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTG-CCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagaCTCCTTGACCTGCCCTTGGG-AGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagaCTCCTTGACCTGCCCTTGGGAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCCTTGGGAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCCTTGGGAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCCTTGGGAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCCTTGGGAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCCTTGGGAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCCTTGGGAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAG-CCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGG-TGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from Exonerate_coding2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg Alignment from GeneWise CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcatgagccagggagtggctctctcccgccaacaccgCAGGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgggttcagactccctcatgcctgggtttgtctatccattccaggcttg #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATT-CCTCCCTCCCGACAGACACTCCTCATCGAGag tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagtgAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCCTCCCT-CCGCCAGACGCTCCTCATCGAGaggtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagtgAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCCTCCCTCCGCCAGACGCTCCTCATCGAGaggtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCCTCCCTCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCCTCCCTCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCCTCCCTCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCCTCCCTCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCCTCCCTCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCCTCCCTCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTT-CTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagacTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCCTCCAAG-CTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGaggtaagtgtggggtgcatgaggcataggatacaacacacttagtttataga Alignment from CESAR acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagacTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCCTCCAAGCTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGaggtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagc Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCCTCCAAGCTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttataga Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCCTCCAAGCTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttataga Alignment from Pairagon ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCCTCCAAGCTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttataga Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCCTCCAAGCTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttataga Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCCTCCAAGCTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttataga Alignment from GeneWise ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCCTCCAAGCTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttataga #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACTGCCCTCCGGGGAAAGCTG-GGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagcCTGGTGTGCACTGCCCTCCGGGGAAAGCTCCGGTGTCT-CTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagcCTGGTGTGCACTGCCCTCCGGGGAAAGCTCCGGTGTCTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCCGGTGTCTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCCGGTGTCTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGAAAGCT-GGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCCGGTGTC-TCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCCGGTGTCTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCCGGTGTCTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCCGGTGTCTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTAT-TCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATCTCAGTGT-AGTCCATTCCCTGGATGGCTTCcggtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATCTCAGTGTAGTCCATTCCCTGGATGGCTTCcggtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATCTCAGTGTAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATCTCAGTGTAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTAT-TCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATCTCAGTGT-AGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATCTCAGTGTAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATCTCAGTGTAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from GeneWise TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATCTCAGTGTAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc #### Fkbp2_ID1945_4 --> 2 - 1 Original Alignment ggTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAg gt agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagggTATGGAGAGCGGGGACGCCC-CCCAAAGATCCCAggtaagacccctgccaccctgacttcacttttttatttttgaaaataaggt Alignment from CESAR ggTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAg gt agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagggTATGGAGAGCGGGGACGCCCCCCAAAGATCCCAggtaagacccctgccaccctgacttcagttttgctcttgtctctggcaggt Alignment from Spaln_aa2Genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGACGCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcacttttttatttttgaaaataagGT Alignment from Spaln_nt2Genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGACGCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcacttttttatttttgaaaataagGT Alignment from Pairagon GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGACGCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcacttttttatttttgaaaataagGT Alignment from Exonerate_protein2genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGACGCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcacttttttatttttgaaaataagGT Alignment from Exonerate_coding2genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGACGCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcacttttttatttttgaaaataagGT Alignment from GeneWise GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGACGCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcacttttttatttttgaaaataagGT #### Fkbp2_ID1946_3 --> 1 - 1 Original Alignment gATGTGTGAAGGGGAAAAGCGGAAG-TTGGTGATCCCATCCGAGCTGg tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcaggATGTGTGAAGGAGAAAGGCGGAAGCTTGGTGA-CCCATCAGAGCTGggtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from CESAR gATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGg tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcaggATGTGTGAAGGAGAAAGGCGGAAGCTTGGTGACCCATCAGAGCTGggtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from Spaln_aa2Genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGAAGCTTGGTGACCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from Spaln_nt2Genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGAAGCTTGGTGACCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from Pairagon GATGTGTGAAGGGGAAAAGCGGAAG-TTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGAAGCTTGGTGA-CCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from Exonerate_protein2genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGAAGCTTGGTGACCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from Exonerate_coding2genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGAAGCTTGGTGACCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from GeneWise GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGAAGCTTGGTGACCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa #### Frmd8_ID1284_4 --> 2 - 0 Original Alignment atGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTT-TTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagatGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTCTTCCCCA-GCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from CESAR atGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagatGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTCTTCCCCAGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from Spaln_aa2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTCTTCCCCAGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from Spaln_nt2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTCTTCCCCAGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from Pairagon ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTCTTCCCCAGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from Exonerate_protein2genome TCGCCATGGATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgGGTCTGCAGATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTCTTCCCCAGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from Exonerate_coding2genome TCGCCATGGATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgGGTCTGCAGATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTCTTCCCCAGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from GeneWise ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTCTTCCCCAGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTG-TATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga gagattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaaggcCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGCTATG-GATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTgagtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from CESAR gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga tcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaaggcCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGCTATGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTgagtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gagattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGCTATGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gagattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGCTATGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Pairagon GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gagattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGCTATGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gagattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGCTATGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gagattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGCTATGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from GeneWise -------------------------------------------------GGCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA GAGATTGGGCAAGACCAAAGAGAAGTGCCTGCTGTTCTGTTTACCGAAAGGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGCTATGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCAT-GGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATCGGACTGTATG-TAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAggtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCAT-GGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATCGGACTGTATG-TAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAggtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCAC------ATCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATCGGACTGTATGTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATCGGACTGTATGTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCAT-GGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATCGGACTGTATG-TAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATCGGACTGTATGTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATCGGACTGTATGTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATCGGACTGTATGTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata #### Ganab_ID2475_14 --> 2 - 0 Original Alignment gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGG-ATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcaggcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGCATGA-GGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from CESAR gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcaggcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGCATGAGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from Spaln_aa2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGCATGAGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from Spaln_nt2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGCATGAGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from Pairagon GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGG-ATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGCATGA-GGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from Exonerate_protein2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGCATGAGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from Exonerate_coding2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGCATGAGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from GeneWise GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGCATGAGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCA-CTGGTGGGGCTTTCCTTCTGTGGAg gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACCTGGTGG-GCTTTCCTTCTGTGGAggtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACCTGGTGGGCTTTCCTTCTGTGGAggtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACCTGGTGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACCTGGTGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACCTGGTGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACCTGGTGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACCTGGTGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACCTGGTGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTG-CCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCCAG-AACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCCAGAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCCAGAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCCAGAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCCAGAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCCAGAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCCAGAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaatccctatgtactgggtgaagacatctttctcatgtcacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTGCCCAGAACTTTGAGCAGTgtaagtatgtctctctagctaccatctctgtttgcttgtcctttcccaga #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGA-ACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGACACCATTG-GCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGACACCATTGGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGACACCATTGGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGACACCATTGGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGA-ACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGACACCATTG-GCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGACACCATTGGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGACACCATTGGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGACACCATTGGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg #### Ganab_ID2484_23 --> 0 - 2 Original Alignment GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTC-TCTTTCTCTGGCAGCACACTGGTCTCTag ggtgaaggcaccccctcttcggcttaggatatacatgtatacttccacagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTCCTCTTTCT-TGGCAGCACACTGGTGTCTaggtgagtggtatcctctatatgccttgccttcaagggtgctcaggtttgct Alignment from CESAR GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag ggtgaaggcaccccctcttcggcttaggatatacatgtatacttccacagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTCCTCTTTCTTGGCAGCACACTGGTGTCTaggtgagtggtatcctctatatgccttgccttcaagggtgctcaggtttgct Alignment from Spaln_aa2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaaggcaccccctcttcggcttaggatatacatgtatacttccacagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTCCTCTTTCTTGGCAGCACACTGGTGTCTAGgtgagtggtatcctctatatgccttgccttcaagggtgctcaggtttgct Alignment from Spaln_nt2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaaggcaccccctcttcggcttaggatatacatgtatacttccacagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTCCTCTTTCTTGGCAGCACACTGGTGTCTAGgtgagtggtatcctctatatgccttgccttcaagggtgctcaggtttgct Alignment from Pairagon GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTT-CTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaaggcaccccctcttcggcttaggatatacatgtatacttccacagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTCCTCTTTCT-TGGCAGCACACTGGTGTCTAGgtgagtggtatcctctatatgccttgccttcaagggtgctcaggtttgct Alignment from Exonerate_protein2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaaggcaccccctcttcggcttaggatatacatgtatacttccacagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTCCTCTTTCTTGGCAGCACACTGGTGTCTAGgtgagtggtatcctctatatgccttgccttcaagggtgctcaggtttgct Alignment from Exonerate_coding2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaaggcaccccctcttcggcttaggatatacatgtatacttccacagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTCCTCTTTCTTGGCAGCACACTGGTGTCTAGgtgagtggtatcctctatatgccttgccttcaagggtgctcaggtttgct Alignment from GeneWise GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaaggcaccccctcttcggcttaggatatacatgtatacttccacagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTCCTCTTTCTTGGCAGCACACTGGTGTCTAGgtgagtggtatcctctatatgccttgccttcaagggtgctcaggtttgct #### Ganab_ID2485_24 --> 1 - 1 Original Alignment tTCAGCAGACCCCAAAGGCCACCTTGAGACA-CCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg tgcccttgctgcccatttctccaagtggaacagcgcgttctctcctccagtTTAGCGGACCCCAAGGGCCACCTGGAGACACCCTATTT-GATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAggtaagcgataggtccagcattgaaattgagagaagaagcagtagcagggt Alignment from CESAR tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg tgcccttgctgcccatttctccaagtggaacagcgcgttctctcctccagtTTAGCGGACCCCAAGGGCCACCTGGAGACACCCTATTTGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAggtaagcgataggtccagcattgaaattgagagaagaagcagtagcagggt Alignment from Spaln_aa2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgcccttgctgcccatttctccaagtggaacagcgcgttctctcctccagTTTAGCGGACCCCAAGGGCCACCTGGAGACACCCTATTTGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagcgataggtccagcattgaaattgagagaagaagcagtagcagggt Alignment from Spaln_nt2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgcccttgctgcccatttctccaagtggaacagcgcgttctctcctccagTTTAGCGGACCCCAAGGGCCACCTGGAGACACCCTATTTGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagcgataggtccagcattgaaattgagagaagaagcagtagcagggt Alignment from Pairagon TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgcccttgctgcccatttctccaagtggaacagcgcgttctctcctccagTTTAGCGGACCCCAAGGGCCACCTGGAGACACCCTATTTGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagcgataggtccagcattgaaattgagagaagaagcagtagcagggt Alignment from Exonerate_protein2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgcccttgctgcccatttctccaagtggaacagcgcgttctctcctccagTTTAGCGGACCCCAAGGGCCACCTGGAGACACCCTATTTGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagcgataggtccagcattgaaattgagagaagaagcagtagcagggt Alignment from Exonerate_coding2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgcccttgctgcccatttctccaagtggaacagcgcgttctctcctccagTTTAGCGGACCCCAAGGGCCACCTGGAGACACCCTATTTGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagcgataggtccagcattgaaattgagagaagaagcagtagcagggt Alignment from GeneWise TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tgcccttgctgcccatttctccaagtggaacagcgcgttctctcctccagTTTAGCGGACCCCAAGGGCCACCTGGAGACACCCTATTTGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtaagcgataggtccagcattgaaattgagagaagaagcagtagcagggt #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAA-GAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt aggtgaagtatattcctaccacaagtcttcctttgctgctcttcatgcagAATGCCTTCCCTGTATCTGGTCAGCTCTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAACGAGA-AAAAGAGACACCTAGACCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGtgtacccagcatcttatactgttcttattctttttcttttttgtccttact Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt aggtgaagtatattcctaccacaagtcttcctttgctgctcttcatgcagAATGCCTTCCCTGTATCTGGTCAGCTCTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAACGAGAAAAAGAGACACCTAGACCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGtgtacccagcatcttatactgttcttattctttttcttttttgtccttact Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctaccacaagtcttcctttgctgctcttcatgcagAATGCCTTCCCTGTATCTGGTCAGCTCTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAACGAGAAAAAGAGACACCTAGACCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtacccagcatcttatactgttcttattctttttcttttttgtccttact Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctaccacaagtcttcctttgctgctcttcatgcagAATGCCTTCCCTGTATCTGGTCAGCTCTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAACGAGAAAAAGAGACACCTAGACCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtacccagcatcttatactgttcttattctttttcttttttgtccttact Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctaccacaagtcttcctttgctgctcttcatgcagAATGCCTTCCCTGTATCTGGTCAGCTCTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAACGAGAAAAAGAGACACCTAGACCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtacccagcatcttatactgttcttattctttttcttttttgtccttact Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctaccacaagtcttcctttgctgctcttcatgcagAATGCCTTCCCTGTATCTGGTCAGCTCTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAACGAGAAAAAGAGACACCTAGACCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtacccagcatcttatactgttcttattctttttcttttttgtccttact Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctaccacaagtcttcctttgctgctcttcatgcagAATGCCTTCCCTGTATCTGGTCAGCTCTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAACGAGAAAAAGAGACACCTAGACCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtacccagcatcttatactgttcttattctttttcttttttgtccttact Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctaccacaagtcttcctttgctgctcttcatgcagAATGCCTTCCCTGTATCTGGTCAGCTCTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAACGAGAAAAAGAGACACCTAGACCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtacccagcatcttatactgttcttattctttttcttttttgtccttact #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCAT-TTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg accgattgatttcctgcctataagtcatctattcattctttccctcacagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATCTTTCCAA-TGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCagtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg accgattgatttcctgcctataagtcatctattcattctttccctcacagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATCTTTCCAATGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCagtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATCTTTCCAATGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATCTTTCCAATGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATCTTTCCAATGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATCTTTCCAATGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATCTTTCCAATGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATCTTTCCAATGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGC-CTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttcgacctcctctctttgtaagcaggAAGTGTGCCATGATCTCTGCCCACTATGGCCCTCAGCG-TGTGTTTGACAATCTCATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacggtggttagaggagagtgaacctcttcctccc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttcgacctcctctctttgtaagcaggAAGTGTGCCATGATCTCTGCCCACTATGGCCCTCAGCGTGTGTTTGACAATCTCATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacggtggttagaggagagtgaacctcttcctccc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttcgacctcctctctttgtaagcagGAAGTGTGCCATGATCTCTGCCCACTATGGCCCTCAGCGTGTGTTTGACAATCTCATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacggtggttagaggagagtgaacctcttcctccc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttcgacctcctctctttgtaagcagGAAGTGTGCCATGATCTCTGCCCACTATGGCCCTCAGCGTGTGTTTGACAATCTCATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacggtggttagaggagagtgaacctcttcctccc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGG-CCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttcgacctcctctctttgtaagcagGAAGTGTGCCATGATCTCTGCCCACTATGGCCCTCAGCG-TGTGTTTGACAATCTCATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacggtggttagaggagagtgaacctcttcctccc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttcgacctcctctctttgtaagcagGAAGTGTGCCATGATCTCTGCCCACTATGGCCCTCAGCGTGTGTTTGACAATCTCATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacggtggttagaggagagtgaacctcttcctccc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttcgacctcctctctttgtaagcagGAAGTGTGCCATGATCTCTGCCCACTATGGCCCTCAGCGTGTGTTTGACAATCTCATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacggtggttagaggagagtgaacctcttcctccc Alignment from GeneWise -AGGAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttcgacctcctctctttgtaagCAGGAAGTGTGCCATGATCTCTGCCCACTATGGCCCTCAGCGTGTGTTTGACAATCTCATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacggtggttagaggagagtgaacctcttcctccc #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATCGGCAAGA-CTCTCTACAGCGCGAGGAGACACCATCTAACcggtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from CESAR GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATCGGCAAGACTCTCTACAGCGCGAGGAGACACCATCTAACcggtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATCGGCAAGACTCTCTACAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATCGGCAAGACTCTCTACAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Pairagon GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATCGGCAAGA-CTCTCTACAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATCGGCAAGACTCTCTACAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATCGGCAAGACTCTCTACAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATCGGCAAGACTCTCTACAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCA-TCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG gtagtagttgtcagaatgtcagcactcacctttctccctgtttctctcagaGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCACTCTACAG-GAACCAGGAGGCTAAGAGAGTGGCCTTAGACTGTATTAAGgtaaaagattgctctctcatgggaactcctaaagagctgtgaccctatga Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG gtagtagttgtcagaatgtcagcactcacctttctccctgtttctctcagaGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCACTCTACAGGAACCAGGAGGCTAAGAGAGTGGCCTTAGACTGTATTAAGgtaaaagattgctctctcatgggaactcctaaagagctgtgaccctatga Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG gtagtagttgtcagaatgtcagcactcacctttctccctgtttctctcagAGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCACTCTACAGGAACCAGGAGGCTAAGAGAGTGGCCTTAGACTGTATTAAGgtaaaagattgctctctcatgggaactcctaaagagctgtgaccctatga Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG gtagtagttgtcagaatgtcagcactcacctttctccctgtttctctcagAGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCACTCTACAGGAACCAGGAGGCTAAGAGAGTGGCCTTAGACTGTATTAAGgtaaaagattgctctctcatgggaactcctaaagagctgtgaccctatga Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCA-TCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG gtagtagttgtcagaatgtcagcactcacctttctccctgtttctctcagAGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCACTCTACAG-GAACCAGGAGGCTAAGAGAGTGGCCTTAGACTGTATTAAGgtaaaagattgctctctcatgggaactcctaaagagctgtgaccctatga Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG gtagtagttgtcagaatgtcagcactcacctttctccctgtttctctcagAGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCACTCTACAGGAACCAGGAGGCTAAGAGAGTGGCCTTAGACTGTATTAAGgtaaaagattgctctctcatgggaactcctaaagagctgtgaccctatga Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG gtagtagttgtcagaatgtcagcactcacctttctccctgtttctctcagAGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCACTCTACAGGAACCAGGAGGCTAAGAGAGTGGCCTTAGACTGTATTAAGgtaaaagattgctctctcatgggaactcctaaagagctgtgaccctatga Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG gtagtagttgtcagaatgtcagcactcacctttctccctgtttctctcagAGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCACTCTACAGGAACCAGGAGGCTAAGAGAGTGGCCTTAGACTGTATTAAGgtaaaagattgctctctcatgggaactcctaaagagctgtgaccctatga #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTC-CAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCCAGCTGGAAT-ACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCCAGCTGGAATACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCCAGCTGGAATACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCCAGCTGGAATACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Pairagon CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCT-CCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCCAGCTGGAAT-ACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCCAGCTGGAATACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCCAGCTGGAATACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCCAGCTGGAATACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc #### Gbf1_ID9811_30 --> 2 - 0 Original Alignment gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACT-TCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcaggaGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTCTCCG-CTCAGAGGTATACACGGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from CESAR gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcaggaGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTCTCCGCTCAGAGGTATACACGGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from Spaln_aa2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTCTCCGCTCAGAGGTATACACGGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from Spaln_nt2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTCTCCGCTCAGAGGTATACACGGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from Pairagon GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTCTCCGCTCAGAGGTATACACGGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from Exonerate_protein2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTCTCCGCTCAGAGGTATACACGGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from Exonerate_coding2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTCTCCGCTCAGAGGTATACACGGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag Alignment from GeneWise GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctgataactttctgtttctctcagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGACGTCAGCCTTGACCGAGGGTACACTCTCCGCTCAGAGGTATACACGGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaagtctactcttattttaggcgtaaaacaaatgggttttagttctcag #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATG-GAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGCGAAGAGACCC-GATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATG-GAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGCGAAGAGACCC-GATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGCGAAGAGACCCGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGCGAAGAGACCCGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATG-GAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGCGAAGAGACCC-GATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGCGAAGAGACCCGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGCGAAGAGACCCGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGCGAAGAGACCCGATGCGGGCTTCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTC-AAGCAGACTGTCATCCAGg gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCCAAGC-GACTGTCATCCAGggtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCCAAGCGACTGTCATCCAGggtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCCAAGCGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCCAAGCGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCCAAGCGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCCAAGCGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCCAAGCGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccatcttaaagcactactcctcttgtccttggcttctccaatccagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCCAAGCGACTGTCATCCAGGgtgagcgcgcatttgatctcaactcctctgttcactgtgctaagaattat #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGGTAT-ATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagtTATCACTCAGAAACCAATCTTGTCCGTTACCATGAAGAAAC-GGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagtTATCACTCAGAAACCAATCTTGTCCGTTACCATGAAGAAACGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCTTGTCCGTTACCATGAAGAAACGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCTTGTCCGTTACCATGAAGAAACGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTA-TATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCTTGTCCGTTACCATGAAGAAAC-GGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCTTGTCCGTTACCATGAAGAAACGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCTTGTCCGTTACCATGAAGAAACGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggactggcctgactcttatttacataattgtgtgatttttccagTTATCACTCAGAAACCAATCTTGTCCGTTACCATGAAGAAACGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagtgtgtgtgtggctagccatatacacctgtaggtcaaattcaatgc #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGG-GATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagagAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCTACTGGCGATGCAG-GAAGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagagAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGGAAGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGGAAGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGGAAGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGG-GATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCTACTGGCGATGCAG-GAAGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGGAAGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGGAAGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG tgaccttgcctaataggcacgcaccagccatcttttctttcctcatttagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTTAAGGACATTCGGCCCTATTGCTACTGGCGATGCAGGAAGAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtaagtgatacagaagagcagtggagagttctgtttaggtgcagcaagaa #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTA-GGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTACGGGAACA-AGGTTACCTGGTGTTTGGTCTCATCCTC---TTTTGGGAACTGCTGCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTACGGGAACAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTACGGGAACAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTACGGGAACAAGGTTACCTGGTGTTTGGTC---TCATCCTCTTTTGGGAACTGCTGCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTACGGGAACAAGGTTACCTGGTGTTTGGTCTCATCCTCT---TTTGGGAACTGCTGCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTACGGGAACAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTACGGGAACAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ttgccatcagcctctgtattgacataatttttttaattgtattttattagGCAGATCTGGTCAATGACCTACGGGAACAAGGTTACCTGGTGTTTGGTCTCATCCTCTTT---TGGGAACTGCTGCCCACCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaagtaccccttgccaacctcctctcagtgtagtatagaggtctggacc #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGT-GCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTCGCCC-CTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTCGCCCCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTCGCCCCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTCGCCCCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTCGCCCCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTCGCCCCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Exonerate_coding2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTCGCCCCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from GeneWise GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTCGCCCCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGAC-AACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagtgGGTGGGCAGCGCCGAGGCTACGACCAACCGGG-CTATGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagtgGGTGGGCAGCGCCGAGGCTACGACCAACCGGGCTATGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACCAACCGGGCTATGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACCAACCGGGCTATGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACCAACCGGGCTATGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACCAACCGGGCTATGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACCAACCGGGCTATGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACCAACCGGGCTATGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc agggcacataaacaactgcccctgcctattctctcctccccatcttacaggGAGAGGCTTCTGCGACTGGAAGG-CTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTtcgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from CESAR gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc agggcacataaacaactgcccctgcctattctctcctccccatcttacaggGAGAGGCTTCTGCGACTGGAAGGCTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTtcgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagGGAGAGGCTTCTGCGACTGGAAGGCTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from Spaln_nt2Genome GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagGGAGAGGCTTCTGCGACTGGAAGG-CTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from Pairagon GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagGGAGAGGCTTCTGCGACTGGAAGG-CTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from Exonerate_protein2genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagGGAGAGGCTTCTGCGACTGGAAGGCTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from Exonerate_coding2genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagGGAGAGGCTTCTGCGACTGGAAGGCTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from GeneWise GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagGGAGAGGCTTCTGCGACTGGAAGGCTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCC-CAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcaggTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCCAGCACC-ACAGGACCAAGCCCAGAAACTTATGaagtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcaggTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCCAGCACCACAGGACCAAGCCCAGAAACTTATGaagtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCCAGCACCACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCCAGCACCACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTG-CCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCCAGCACC-ACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCCAGCACCACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Exonerate_coding2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCCAGCACCACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCCAGCACCACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCC-ACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCA-GAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from CESAR AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from Pairagon AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from Exonerate_coding2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tctgccattctgactgcacctctcgggatatttccaatttttcattgtagAGGAGACCCAAAAGCAGCCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGAGTTCCAGGGAGACAgtaagagctaggccctctggcagaatagggtgtctccatctatcttccct #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAA-AAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccaggGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAACAAGGAAC-ACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccaggGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAACAAGGAACACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAACAAGGAACACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAACAAGGAACACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAACAAGGAACACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAACAAGGAACACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAACAAGGAACACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAACAAGGAACACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGT-TTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacaggtCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCCTACGAG-CTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacaggtCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCCTACGAGCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCCTACGAGCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCCTACGAGCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGT-TTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCCTACGAG-CTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCCTACGAGCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCCTACGAGCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCCTACGAGCTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAA-ACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccaggcTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGG-GATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCaagtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccaggcTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCaagtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAA-ACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGG-GATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAACACCATCTTGGGATCCTGATGGGGCTGAAGTCGGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAA-GATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGCGATTACAACA-AGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCagtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from CESAR GAAAAGGAATCCACAGAA-GATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGCGATTACAAC-AAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCagtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGCGATTACAACAAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAA-GATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGCGATTACAA-CAAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Pairagon GAAAAGGAATCCACAGAA-GATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGCGATTACAACA-AGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGCGATTACAACAAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGCGATTACAACAAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAGAGCGATTACAACAAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAAC-GGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagtcAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGGCCCAGACACCTACCAAGAATCGGACTTC-TGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagtcAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGGCCCAGACACCTACCAAGAATCGGACTTCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGGCCCAGACACCTACCAAGAATCGGACTTCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGGCCCAGACACCTACCAAGAATCGGACTTCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAA-CGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGGCCCAGACACCTACCAAGAATCGGACTT-CTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGGCCCAGACACCTACCAAGAATCGGACTTCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGGCCCAGACACCTACCAAGAATCGGACTTCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGGCCCAGACACCTACCAAGAATCGGACTTCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAG-GACAACGAAGATGAGTGGc gagccggaggcctgccagtacccagcccttgactattcttctcctcttagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCAACGATA-TGAAGATGAGTGGcgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from CESAR GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagccggaggcctgccagtacccagcccttgactattcttctcctcttagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCAACGATATGAAGATGAGTGGcgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from Spaln_aa2Genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccggaggcctgccagtacccagcccttgactattcttctcctcttagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCAACGATATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from Spaln_nt2Genome GGG-AGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccggaggcctgccagtacccagcccttgactattcttctcctcttagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCAACGATATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from Pairagon ----------------------------------------------------GGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC GAGCCGGAGGCCTGCCAGTACCCAGCCCTTGACTATTCTTCTCCTCTTAGGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCAACGATATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccggaggcctgccagtacccagcccttgactattcttctcctcttagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCAACGATATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from Exonerate_coding2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccggaggcctgccagtacccagcccttgactattcttctcctcttagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCAACGATATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg Alignment from GeneWise GCGGAGGTGGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccggaggcctgccagtacccagcccttgactattcttctcctcttag---------GGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCAATCAACGATATGAAGATGAGTGGCgtaagtgttctctgggggcaggtccaaagaagctgagggcggggggcagg #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAGGACGGC-GTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgagtgaagatttcactcacccattcccttaactcctgtctcttcatcagAAGATGGACAGAAACAAGGATGGTCGTGGTGA-CATTGAGGAATTCATTGAGTCTTGTCAACAGgtgaaaatacactctctaaacatctctgtactgaagtgaagttcagacct Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgagtgaagatttcactcacccattcccttaactcctgtctcttcatcagAAGATGGACAGAAACAAGGATGGTCGTGGTGACATTGAGGAATTCATTGAGTCTTGTCAACAGgtgaaaatacactctctaaacatctctgtactgaagtgaagttcagacct Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgagtgaagatttcactcacccattcccttaactcctgtctcttcatcagAAGATGGACAGAAACAAGGATGGTCGTGGTGACATTGAGGAATTCATTGAGTCTTGTCAACAGgtgaaaatacactctctaaacatctctgtactgaagtgaagttcagacct Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgagtgaagatttcactcacccattcccttaactcctgtctcttcatcagAAGATGGACAGAAACAAGGATGGTCGTGGTGACATTGAGGAATTCATTGAGTCTTGTCAACAGgtgaaaatacactctctaaacatctctgtactgaagtgaagttcagacct Alignment from Pairagon AAGATGGACAGAAACAAGGACGG-CGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgagtgaagatttcactcacccattcccttaactcctgtctcttcatcagAAGATGGACAGAAACAAGGATGGTCGTGGTGA-CATTGAGGAATTCATTGAGTCTTGTCAACAGgtgaaaatacactctctaaacatctctgtactgaagtgaagttcagacct Alignment from Exonerate_protein2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgagtgaagatttcactcacccattcccttaactcctgtctcttcatcagAAGATGGACAGAAACAAGGATGGTCGTGGTGACATTGAGGAATTCATTGAGTCTTGTCAACAGgtgaaaatacactctctaaacatctctgtactgaagtgaagttcagacct Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgagtgaagatttcactcacccattcccttaactcctgtctcttcatcagAAGATGGACAGAAACAAGGATGGTCGTGGTGACATTGAGGAATTCATTGAGTCTTGTCAACAGgtgaaaatacactctctaaacatctctgtactgaagtgaagttcagacct Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgagtgaagatttcactcacccattcccttaactcctgtctcttcatcagAAGATGGACAGAAACAAGGATGGTCGTGGTGACATTGAGGAATTCATTGAGTCTTGTCAACAGgtgaaaatacactctctaaacatctctgtactgaagtgaagttcagacct #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTC-CGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCCGGGAGG-AGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCCGGGAGGAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCCGGGAGGAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCCGGGAGGAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCCGGGAGGAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCCGGGAGGAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCCGGGAGGAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCCGGGAGGAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGA-GACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa attcttccatggtttattcttatctttctctttttatttatctacaacagatTTTAATGTCGAATATATCCAGCGGGGTGGCTTGAGACGACCCTCTCA-TTTCAAGAATTCTGATGGACTTGGAATAaggtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from CESAR atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa attcttccatggtttattcttatctttctctttttatttatctacaacagatTTTAATGTCGAATATATCCAGCGGGGTGGCTTGAGACGACCCTCTCATTTCAAGAATTCTGATGGACTTGGAATAaggtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCGGGGTGGCTTGAGACGACCCTCTCATTTCAAGAATTCTGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCGGGGTGGCTTGAGACGACCCTCTCATTTCAAGAATTCTGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from Pairagon ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGA-GACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCGGGGTGGCTTGAGACGACCCTCTCA-TTTCAAGAATTCTGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCGGGGTGGCTTGAGACGACCCTCTCATTTCAAGAATTCTGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCGGGGTGGCTTGAGACGACCCTCTCATTTCAAGAATTCTGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA attcttccatggtttattcttatctttctctttttatttatctacaacagATTTTAATGTCGAATATATCCAGCGGGGTGGCTTGAGACGACCCTCTCATTTCAAGAATTCTGATGGACTTGGAATAAGgtatgagctcatgggccccaagcctgacatagttgcaaattttacaccca #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTT-ATTATGGGCTATAATTGCACCATCTTCgc acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTACATTATGG-CTATAATTGTACCATCTCCgcgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from CESAR GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTACATTATGGCTATAATTGTACCATCTCCgcgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTACATTATGGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTT-ATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTACATTAT-GGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGT-TATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTACATTAT-GGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTACATTATGGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTACATTATGGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from GeneWise GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTACATTATGGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGT-GAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGACACTTAAGTCGAGAAAAGCT-TGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGT---GAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGACACTTAAGTCGAGAAAAG---CTTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Spaln_aa2Genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacagGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGACACTTAAGTCGAGAAAAGCTTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Spaln_nt2Genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacagGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGACACTTAAGTCGAGAAAAGCTTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGT-GAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGACACTTAAGTCGAGAAAAGCT-TGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Exonerate_protein2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatCCACAGGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGACACTTAAGTCGAGAAAAGCTTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Exonerate_coding2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatCCACAGGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGACACTTAAGTCGAGAAAAGCTTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from GeneWise GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacagGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATCCTTGGACACTTAAGTCGAGAAAAGCTTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGA-AAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGACATGTGTGTCA-TGTTTTGAAGAACAGTGAAAAGTCAaagtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGACATGTGTGTCATGTTTTGAAGAACAGTGAAAAGTCAaagtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGACATGTGTGTCATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGACATGTGTGTCATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAA-GTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGACATGTGTGTC-ATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGACATGTGTGTCATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGACATGTGTGTCATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGACATGTGTGTCATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa #### Kif20b_ID7006_11 --> 1 - 0 Original Alignment gGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATA-TGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG agccaacattaagatatggtgtatcatacttctggacatttcaccgccaggGTTCAGCATGTGCCTTTCCGTGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATACTGCATGA-CATAAACATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTCCTCAAGTTCTCAATCACTGCGCAGAGGgtaagggtttttagatttatactaaagcattaactgcttggcctgtaaaa Alignment from CESAR gGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG agccaacattaagatatggtgtatcatacttctggacatttcaccgccaggGTTCAGCATGTGCCTTTCCGTGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATACTGCATGACATAAACATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTCCTCAAGTTCTCAATCACTGCGCAGAGGgtaagggtttttagatttatactaaagcattaactgcttggcctgtaaaa Alignment from Spaln_aa2Genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG agccaacattaagatatggtgtatcatacttctggacatttcaccgccagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATACTGCATGACATAAACATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTCCTCAAGTTCTCAATCACTGCGCAGAGGgtaagggtttttagatttatactaaagcattaactgcttggcctgtaaaa Alignment from Spaln_nt2Genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG agccaacattaagatatggtgtatcatacttctggacatttcaccgccagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATACTGCATGACATAAACATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTCCTCAAGTTCTCAATCACTGCGCAGAGGgtaagggtttttagatttatactaaagcattaactgcttggcctgtaaaa Alignment from Pairagon GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATA-TGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG agccaacattaagatatggtgtatcatacttctggacatttcaccgccagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATACTGCATGA-CATAAACATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTCCTCAAGTTCTCAATCACTGCGCAGAGGgtaagggtttttagatttatactaaagcattaactgcttggcctgtaaaa Alignment from Exonerate_protein2genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG agccaacattaagatatggtgtatcatacttctggacatttcaccgccagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATACTGCATGACATAAACATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTCCTCAAGTTCTCAATCACTGCGCAGAGGgtaagggtttttagatttatactaaagcattaactgcttggcctgtaaaa Alignment from Exonerate_coding2genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG agccaacattaagatatggtgtatcatacttctggacatttcaccgccagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATACTGCATGACATAAACATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTCCTCAAGTTCTCAATCACTGCGCAGAGGgtaagggtttttagatttatactaaagcattaactgcttggcctgtaaaa Alignment from GeneWise GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG agccaacattaagatatggtgtatcatacttctggacatttcaccgccagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATACTGCATGACATAAACATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTCCTCAAGTTCTCAATCACTGCGCAGAGGgtaagggtttttagatttatactaaagcattaactgcttggcctgtaaaa #### Klc2_ID852_14 --> 1 - 0 Original Alignment gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAG-AGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCA-GGAGCCC---CAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from CESAR gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCAGGAGCCC---CAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from Spaln_aa2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCAGGAGCCC---CAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from Spaln_nt2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAG-AGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGT-CAGGAGCC---CCAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from Pairagon GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGT----------CCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAG-------------CAGTGTCAGGAGCCCCAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from Exonerate_protein2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCAGGAGCCC---CAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from Exonerate_coding2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCAGGAGCCC---CAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from GeneWise GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCAGGAGCCC---CAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag #### Klc2_ID853_13 --> 0 - 2 Original Alignment GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGG-AAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGCAAAC-CCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTaggtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from CESAR GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGCAAACCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTaggtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from Spaln_aa2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGCAAACCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from Spaln_nt2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGCAAACCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from Pairagon -------------------------------------------------GGACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG GGCGGGCTGTAAGACTACCAAGAAGGGATTCTTTTTGTTCCACATTGTAGGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGCAAACCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from Exonerate_protein2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGCAAACCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from Exonerate_coding2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGCAAACCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from GeneWise GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGCAAACCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGA-GGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGACGGAC-CCGCCGTGGCAGCAGAGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattcct Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGACGGACCCGCCGTGGCAGCAGAGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattctt Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGACGGACCCGCCGTGGCAGCAGAGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattcct Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGACGGACCCGCCGTGGCAGCAGAGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattcct Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGACGGACCCGCCGTGGCAGCAGAGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattcct Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGACGGACCCGCCGTGGCAGCAGAGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattcct Alignment from Exonerate_coding2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGACGGACCCGCCGTGGCAGCAGAGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattcct Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGACGGACCCGCCGTGGCAGCAGAGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattcct #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCC-CTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagcCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCCTGTACT-GCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagcCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCCTGTACTGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCCTGTACTGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCCTGTACTGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCG-CCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCCTGTACT-GCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCCTGTACTGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Exonerate_coding2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCCTGTACTGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCCTGTACTGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCT-GATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTCGAAGACCCCA-TGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTCGAAGACCCCATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTCGAAGACCCCATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTCGAAGACCCCATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCT-GATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTCGAAGACCCC-ATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTCGAAGACCCCATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from Exonerate_coding2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTCGAAGACCCCATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggtaactctgaaactgagtctcctttctcggcagGTCCTCGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCAGAGAGGCCTGGAGATCTATGCCACACGCCTTGGTCCTCGAAGACCCCATGTGGCAAAGACCAAGAACAACCTGgtaggttgtagtggggtgggaagctagtaaggaaggaggcggggagagag #### Klc2_ID860_6 --> 0 - 0 Original Alignment GTGGCTGCGACCCTCAAC-AATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagacaggtccttctctctccctaaagGTGGCTGCGACCCTCAACCAATC-GGCTGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTGTGCAAGAGGGCGCTTGAAATCCGGGAGAAGgtaggtacaggtacggcagcagggcaagagtgccgagcaaacagtagaat Alignment from CESAR GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagacaggtccttctctctccctaaagGTGGCTGCGACCCTCAACCAATCGGCTGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTGTGCAAGAGGGCGCTTGAAATCCGGGAGAAGgtaggtacaggtacggcagcagggcaagagtgccgagcaaacagtagaat Alignment from Spaln_aa2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagacaggtccttctctctccctaaagGTGGCTGCGACCCTCAACCAATCGGCTGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTGTGCAAGAGGGCGCTTGAAATCCGGGAGAAGgtaggtacaggtacggcagcagggcaagagtgccgagcaaacagtagaat Alignment from Spaln_nt2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagacaggtccttctctctccctaaagGTGGCTGCGACCCTCAACCAATCGGCTGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTGTGCAAGAGGGCGCTTGAAATCCGGGAGAAGgtaggtacaggtacggcagcagggcaagagtgccgagcaaacagtagaat Alignment from Pairagon GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagacaggtccttctctctccctaaagGTGGCTGCGACCCTCAACCAATCGGCTGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTGTGCAAGAGGGCGCTTGAAATCCGGGAGAAGgtaggtacaggtacggcagcagggcaagagtgccgagcaaacagtagaat Alignment from Exonerate_protein2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagacaggtccttctctctccctaaagGTGGCTGCGACCCTCAACCAATCGGCTGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTGTGCAAGAGGGCGCTTGAAATCCGGGAGAAGgtaggtacaggtacggcagcagggcaagagtgccgagcaaacagtagaat Alignment from Exonerate_coding2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagacaggtccttctctctccctaaagGTGGCTGCGACCCTCAACCAATCGGCTGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTGTGCAAGAGGGCGCTTGAAATCCGGGAGAAGgtaggtacaggtacggcagcagggcaagagtgccgagcaaacagtagaat Alignment from GeneWise GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagacaggtccttctctctccctaaagGTGGCTGCGACCCTCAACCAATCGGCTGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTGTGCAAGAGGGCGCTTGAAATCCGGGAGAAGgtaggtacaggtacggcagcagggcaagagtgccgagcaaacagtagaat #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCC-AAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCCAAAGACTCCC-CGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAggtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCCAAAGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAggtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCCAAAGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCCAAAGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Pairagon GAGGAGAAGGGTGATGT-CCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCCAAAGACTCCCC-GACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCCAAAGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Exonerate_coding2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCCAAAGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCCAAAGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCC-CGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCCGAGACT-CCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCCGAGACTCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCCGAGACTCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCCGAGACTCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAG-CCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCCGAGACT-CCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCCGAGACTCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCCGAGACTCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCCGAGACTCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGC-CGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCCGGTTGT-CTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCCGGTTGTCTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCCGGTTGTCTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCCGGTTGTCTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from Pairagon GTGTGTGTGGAAGG-CCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCCGGTTGT-CTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCCGGTTGTCTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCCGGTTGTCTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCCGGTTGTCTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTC-TGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCCTGGTGGGATG-TTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATagtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCCTGGTGGGATGTTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATagtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCCTGGTGGGATGTTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCCTGGTGGGATGTTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from Pairagon GAGTGTGACAATCT-CTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCCTGGTGGGATG-TTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCCTGGTGGGATGTTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCCTGGTGGGATGTTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from GeneWise GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCCTGGTGGGATGTTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcaggAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTAC-GAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from CESAR gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcaggAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from Pairagon GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from GeneWise GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc #### Loxl4_ID8568_7 --> 2 - 0 Original Alignment ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACAT-GCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagggCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATCGCAAATG-TGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from CESAR ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagggCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATCGCAAATGTGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from Spaln_aa2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATCGCAAATGTGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from Spaln_nt2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATCGCAAATGTGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from Pairagon GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACAT-GCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATCGCAAATG-TGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from Exonerate_protein2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATCGCAAATGTGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from Exonerate_coding2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATCGCAAATGTGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from GeneWise GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATCGCAAATGTGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact #### Loxl4_ID8570_5 --> 1 - 0 Original Alignment gCTCAACAGCCTGACAAAAAAGAATTCCTTC-TGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcaggCTCAACAGCCTCACAAAAGAGAATTCATTCCTGGATTC-CAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from CESAR gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcaggCTCAACAGCCTCACAAAAGAGAATTCATTCCTGGATTCCAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from Spaln_aa2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCCTGGATTCCAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from Spaln_nt2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCCTGGATTCCAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from Pairagon GCTCAACAGCCTGACAAAAAAGAATTCCTT-CTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCCTGGATTC-CAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from Exonerate_protein2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCCTGGATTCCAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from Exonerate_coding2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCCTGGATTCCAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa Alignment from GeneWise GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG tttcaccttctcatccctactcaagcaccactgtcttgttgccctttcagGCTCAACAGCCTCACAAAAGAGAATTCATTCCTGGATTCCAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtacatccccaggacgctgatcaatctgtcggtgcagagatcctgaccaa #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTAC-TGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACCTGTG-TGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatattc Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACCTGTGTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatatcc Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACCTGTGTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatattc Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACCTGTGTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatattc Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTA-CTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACCTGTG-TGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatattc Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACCTGTGTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatattc Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACCTGTGTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatattc Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccctgattttgtacttcttggctccagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACCTGTGTGCTCCCATCACAGATgtaagtgaagccccacgctgacagctcacatgcactcactgacaatattc #### Ltbp3_ID1252_4 --> 0 - 1 Original Alignment TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGT-AGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGt gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTCAGCATCG-TACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGtgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from CESAR TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGt gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTCAGCATCGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGtgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from Spaln_aa2Genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTCAGCATCGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from Spaln_nt2Genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTCAGCATCGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from Pairagon TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGT-AGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTCAGCATC-GTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from Exonerate_protein2genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTCAGCATCGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from Exonerate_coding2genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTCAGCATCGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from GeneWise TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTCAGCATCGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAACGAGCGCTCAG-GCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCTAggtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from CESAR CCAGTGAGTGAGGAGCGATCGGTG---CAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGT---GAACGAGCGCTCAGGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCTAggtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAACGAGCGCTCAGGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from Spaln_nt2Genome CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAACGAGCGCTCAG-GCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from Pairagon CCAGTGAGTGAG-GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAACGAGCGCTCAG-GCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagCCAGTGAGTGAACGAGCGCTCAGGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from Exonerate_coding2genome GAGTGACCATGGATCCA------CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagagGGGTCACTGCTTTTGCTTTCTAGCCAGTGAGTGAACGAGCGCTCAGGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg Alignment from GeneWise GCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggaaggcttgtggtaccatcaggagaggggtcactgcttttgctttctagccagtgagtgaacgagcgctcagGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCTAGgtgagcgaggcaggggggggtgagctaaaccactgggacagatatgcatg #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACC-AAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagacCTGAATGAGTGCACCCAAGC-TCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagacCTGAATGAGTGCACCCAAGCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCCAAGCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCCAAGCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCCAAGCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCCAAGCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from Exonerate_coding2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCCAAGCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG ggcctgtttctactcttgaccccaccccaactgtctccgatgccctacagACCTGAATGAGTGCACCCAAGCTCACCTGTGTGGGGATGGTGGCTTTTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaccatatcaccccaaccaaagcaggcataattatcatccctcgactta #### Ltbp3_ID1268_20 --> 2 - 1 Original Alignment agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGC-TCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg tcagggctaatatgactgtctctatgaagtgcctcttcttcctgctgcagagGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCCTCTCTGG-AGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCGTCTACAGCTCAggtatccgggatatacctaacccttcctagagctctcttttggcctgaaac Alignment from CESAR agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg tcagggctaatatgactgtctctatgaagtgcctcttcttcctgctgcagagGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCCTCTCTGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCGTCTACAGCTCAggtatccgggatatacctaacccttcctagagctctcttttggcctgaaac Alignment from Spaln_aa2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctaatatgactgtctctatgaagtgcctcttcttcctgctgcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCCTCTCTGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCGTCTACAGCTCAGgtatccgggatatacctaacccttcctagagctctcttttggcctgaaac Alignment from Spaln_nt2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctaatatgactgtctctatgaagtgcctcttcttcctgctgcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCCTCTCTGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCGTCTACAGCTCAGgtatccgggatatacctaacccttcctagagctctcttttggcctgaaac Alignment from Pairagon AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTG-CTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctaatatgactgtctctatgaagtgcctcttcttcctgctgcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCCTCTCT-GGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCGTCTACAGCTCAGgtatccgggatatacctaacccttcctagagctctcttttggcctgaaac Alignment from Exonerate_protein2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctaatatgactgtctctatgaagtgcctcttcttcctgctgcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCCTCTCTGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCGTCTACAGCTCAGgtatccgggatatacctaacccttcctagagctctcttttggcctgaaac Alignment from Exonerate_coding2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctaatatgactgtctctatgaagtgcctcttcttcctgctgcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCCTCTCTGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCGTCTACAGCTCAGgtatccgggatatacctaacccttcctagagctctcttttggcctgaaac Alignment from GeneWise AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctaatatgactgtctctatgaagtgcctcttcttcctgctgcagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCCTCTCTGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCGTCTACAGCTCAGgtatccgggatatacctaacccttcctagagctctcttttggcctgaaac #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATT-GTGAACTATGGCATTCCTGCCCACCGTg tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagccGAATTTCACAGCCTGTGTCCTGATGGTAAAGGCTATACTCAGGACAACAACATTCGTGA-CTATGGCATTCCTGCCCACCGGggtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagccGAATTTCACAGCCTGTGTCCTGATGGTAAAGGCTATACTCAGGACAACAACATTCGTGACTATGGCATTCCTGCCCACCGGggtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTAAAGGCTATACTCAGGACAACAACATTCGTGACTATGGCATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTAAAGGCTATACTCAGGACAACAACATTCGTGACTATGGCATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTAAAGGCTATACTCAGGACAACAACATTCGTGACTATGGCATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTAAAGGCTATACTCAGGACAACAACATTCGTGACTATGGCATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from Exonerate_coding2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTAAAGGCTATACTCAGGACAACAACATTCGTGACTATGGCATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtggtaagtacatacgtgaaccctccgtcatcagatcctctgtcctcagCCGAATTTCACAGCCTGTGTCCTGATGGTAAAGGCTATACTCAGGACAACAACATTCGTGACTATGGCATTCCTGCCCACCGGGgtgagtaagctacatccttctgtctccttgcttctttctctgacagtttg #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATG-TGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGCTGTATGG-GCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTggtaccttacccctgagggacgagctttttcttcttccttttcagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGCTGTATGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTggtaccttacccctgagggacgaccttccctattgatatccacagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGCTGTATGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgagctttttcttcttccttttcagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGCTGTATGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgagctttttcttcttccttttcagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATG-TGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGCTGTAT-GGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgagctttttcttcttccttttcagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGCTGTATGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgagctttttcttcttccttttcagGGTCCC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGCTGTATGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgagctttttcttcttccttttcagGGTCCC Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGCTGTATGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgagctttttcttcttccttttcagGGTCCC #### Macrod1_ID2052_7 --> 0 - 1 Original Alignment GCTTTCCCGTGC-ATCTCCACAGGCGTGTTTg cagaagggtcatggtcagggttatacgtcaccttgtctcttcctttccagGCTTTTCCATGCCATCT-CACGGGTGTGATTagtaagtctagaagaaccaaatctggtgtgggcagtggcttctgccctgcc Alignment from CESAR GCTTTCCCGTGCATCTCCACAGGCGTGTTTg cagaagggtcatggtcagggttatacgtcaccttgtctcttcctttccagGCTTTTCCATGCCATCTCACGGGTGTGATTagtaagtctagaagaaccaaatctggtgtgggcagtggcttctgccctgcc Alignment from Spaln_aa2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG cagaagggtcatggtcagggttatacgtcaccttgtctcttcctttccagGCTTTTCCATGCCATCTCACGGGTGTGATTAgtaagtctagaagaaccaaatctggtgtgggcagtggcttctgccctgcc Alignment from Spaln_nt2Genome GCTTTCCCGTGC-ATCTCCACAGGCGTGTTTG cagaagggtcatggtcagggttatacgtcaccttgtctcttcctttccagGCTTTTCCATGCCATCT-CACGGGTGTGATTAgtaagtctagaagaaccaaatctggtgtgggcagtggcttctgccctgcc Alignment from Pairagon GCTTTCCCGTGCATCTCCACAGGCGTGTTTG cagaagggtcatggtcagggttatacgtcaccttgtctcttcctttccagGCTTTTCCATGCCATCTCACGGGTGTGATTAgtaagtctagaagaaccaaatctggtgtgggcagtggcttctgccctgcc Alignment from Exonerate_protein2genome TCCACAGGCGTGT CAGAAGGGTCATGgtcagggttatacgtcaccttgtctcttcctttccaggcttttccatgccatctcacgggtgtgattagtaagtctagaagaaccaaatctggtgtgggcagtggcttctgccctgcc Alignment from Exonerate_coding2genome TCCACAGGCGTGT CAGAAGGGTCATGgtcagggttatacgtcaccttgtctcttcctttccaggcttttccatgccatctcacgggtgtgattagtaagtctagaagaaccaaatctggtgtgggcagtggcttctgccctgcc Alignment from GeneWise cagaagggtcatggtcagggttatacgtcaccttgtctcttcctttccaggcttttccatgccatctcacgggtgtgattagtaagtctagaagaaccaaatctggtgtgggcagtggcttctgccctgcc #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAA-TGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttataggcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAACTGGCTGG-GCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttataggcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAACTGGCTGGGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAACTGGCTGGGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAACTGGCTGGGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAA-TGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAACTGGCTGG-GCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAACTGGCTGGGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Exonerate_coding2genome GCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatGTTTTATAGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAACTGGCTGGGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from GeneWise ---------GCTTTCCCGTGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gtggggccagATATGGTATATTTTTAAATGTTTT------------ATAGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAACTGGCTGGGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAG-GTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGCGTGC-CTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGCGTGCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGCGTGCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGCGTGCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGCGTGCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGCGTGCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGCGTGCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGCGTGCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGG-CCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagacTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACT-TGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagacTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCGACTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct #### Map4k2_ID1622_2 --> 0 - 1 Original Alignment GCCCGTGACACC-GTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAg atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCCGTCACATCCG-ACTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAggtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from CESAR GCCCGTGACACC-GTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAg atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCCGTCACATCCG-ACTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAggtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from Spaln_aa2Genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCCGTCACATCCGACTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from Spaln_nt2Genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCCGTCACATCCGACTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from Pairagon GCCCGTGACA-CCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCCGTCACATCCG-ACTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from Exonerate_protein2genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCCGTCACATCCGACTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from Exonerate_coding2genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCCGTCACATCCGACTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from GeneWise GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCCGTCACATCCGACTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTGTGGATCTGTATG-GAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtaggAATGACCGATTGTGGATCTGTATGCGAGT-CTGTGGAGGAGGGTCACTACAGGAGGTTTACCACggtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from CESAR gAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtaggAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGAGGAGGGTCACTACAGGAGGTTTACCACggtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from Spaln_aa2Genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGAGGAGGGTCACTACAGGAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from Spaln_nt2Genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGAGGAGGGTCACTACAGGAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from Pairagon GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGAGGAGGGTCACTACAGGAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from Exonerate_protein2genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGAGGAGGGTCACTACAGGAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from Exonerate_coding2genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGAGGAGGGTCACTACAGGAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg Alignment from GeneWise GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctcctgtgtccattgtgccaaatgttttgcccgcctgtgtagGAATGACCGATTGTGGATCTGTATGCGAGTCTGTGGAGGAGGGTCACTACAGGAGGTTTACCACGgtaagtaccagactccatggacatggcctttcctgatcccaatatagggg #### Map4k2_ID1627_6 --> 0 - 0 Original Alignment GGGCTCCACCACCTGCATTCT-CAGGGGAAAATTCACCGAGACATTAAG gagataattagtgccagttgtccctgggttgtttttcaatttatgcacagGGCCTCCACCACCTGCATTCTCCAGGGAA-AATTCACCGAGACATTAAGgtgagagttcaaccaagtgcatggttcaagtgaggaggaagccgacaggc Alignment from CESAR GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG gagataattagtgccagttgtccctgggttgtttttcaatttatgcacagGGCCTCCACCACCTGCATTCTCCAGGGAAAATTCACCGAGACATTAAGgtgagagttcaaccaagtgcatggttcaagtgaggaggaagccgacaggc Alignment from Spaln_aa2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG gagataattagtgccagttgtccctgggttgtttttcaatttatgcacagGGCCTCCACCACCTGCATTCTCCAGGGAAAATTCACCGAGACATTAAGgtgagagttcaaccaagtgcatggttcaagtgaggaggaagccgacaggc Alignment from Spaln_nt2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG gagataattagtgccagttgtccctgggttgtttttcaatttatgcacagGGCCTCCACCACCTGCATTCTCCAGGGAAAATTCACCGAGACATTAAGgtgagagttcaaccaagtgcatggttcaagtgaggaggaagccgacaggc Alignment from Pairagon GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG gagataattagtgccagttgtccctgggttgtttttcaatttatgcacagGGCCTCCACCACCTGCATTCTCCAGGGAAAATTCACCGAGACATTAAGgtgagagttcaaccaagtgcatggttcaagtgaggaggaagccgacaggc Alignment from Exonerate_protein2genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG gagataattagtgccagttgtccctgggttgtttttcaatttatgcacagGGCCTCCACCACCTGCATTCTCCAGGGAAAATTCACCGAGACATTAAGgtgagagttcaaccaagtgcatggttcaagtgaggaggaagccgacaggc Alignment from Exonerate_coding2genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG gagataattagtgccagttgtccctgggttgtttttcaatttatgcacagGGCCTCCACCACCTGCATTCTCCAGGGAAAATTCACCGAGACATTAAGgtgagagttcaaccaagtgcatggttcaagtgaggaggaagccgacaggc Alignment from GeneWise GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG gagataattagtgccagttgtccctgggttgtttttcaatttatgcacagGGCCTCCACCACCTGCATTCTCCAGGGAAAATTCACCGAGACATTAAGgtgagagttcaaccaagtgcatggttcaagtgaggaggaagccgacaggc #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGA-CGTTCTTTCATTGGCACTCCATACtg gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagcaGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACCATTCTTTCA-TGGCACTCCATACtggtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagcaGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACCATTCTTTCATGGCACTCCATACtggtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACCATTCTTTCATGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACCATTCTTTCATGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Pairagon CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGA-CGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACCATTCTTTCA-TGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACCATTCTTTCATGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACCATTCTTTCATGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACCATTCTTTCATGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCT-ACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctaggACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAG-GAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctaggACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCT-ACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAG-GAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAG-CATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCCATCTCCCTC-AGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCCATCTCCCTCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCCATCTCCCTCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCCATCTCCCTCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Pairagon CACCCATTCACGACCCAG-CATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCCATCTCCCT-CAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCCATCTCCCTCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCCATCTCCCTCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCCATCTCCCTCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta #### Map4k2_ID1634_13 --> 0 - 1 Original Alignment ACCCATGACATGTTTCCAGATACCATC-CATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCAGACACCATTCCATTCCC-CAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGtgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from CESAR ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCAGACACCATTCCATTCCCCAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGtgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from Spaln_aa2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCAGACACCATTCCATTCCCCAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from Spaln_nt2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCAGACACCATTCCATTCCCCAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from Pairagon ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCAGACACCATTCCATTCCCCAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from Exonerate_protein2genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCAGACACCATTCCATTCCCCAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from Exonerate_coding2genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCAGACACCATTCCATTCCCCAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg Alignment from GeneWise ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT gatctgtcatttgtgttttttcacaggcgaaaaaacctcttgtttttcagACCCATGATATGTTTCCAGACACCATTCCATTCCCCAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtgagtcttctggtagcattaaatgcccactttgatctgttgtcatttgg #### Map4k2_ID1635_14 --> 2 - 0 Original Alignment ttCACCAAGTGAAATTCGGTGCT-CCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG cccactctgagacttggaacaccttttactttctgttgcaatttccacagttCACCAAGTGAAATTTGGTGCTCCCTCGTCGGA-GGAGACAGACCCTCTAAATGAACCAgtggggcactgactaatatgtgtgtagtggggttcaggggagggaggcct Alignment from CESAR ttCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG cccactctgagacttggaacaccttttactttctgttgcaatttccacagttCACCAAGTGAAATTTGGTGCTCCCTCGTCGGAGGAGACAGACCCTCTAAATGAACCAgtggggcactgactaatatgtgtgtagtggggttcaggggagggaggcct Alignment from Spaln_aa2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG cccactctgagacttggaacaccttttactttctgttgcaatttccacagTTCACCAAGTGAAATTTGGTGCTCCCTCGTCGGAGGAGACAGACCCTCTAAATGAACCAgtggggcactgactaatatgtgtgtagtggggttcaggggagggaggcct Alignment from Spaln_nt2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG cccactctgagacttggaacaccttttactttctgttgcaatttccacagTTCACCAAGTGAAATTTGGTGCTCCCTCGTCGGAGGAGACAGACCCTCTAAATGAACCAgtggggcactgactaatatgtgtgtagtggggttcaggggagggaggcct Alignment from Pairagon TTCACCAAGTGAAATTCGGTGCT-CCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG cccactctgagacttggaacaccttttactttctgttgcaatttccacagTTCACCAAGTGAAATTTGGTGCTCCCTCGTCGG-AGGAGACAGACCCTCTAAATGAACCAgtggggcactgactaatatgtgtgtagtggggttcaggggagggaggcct Alignment from Exonerate_protein2genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG cccactctgagacttggaacaccttttactttctgttgcaatttccacagTTCACCAAGTGAAATTTGGTGCTCCCTCGTCGGAGGAGACAGACCCTCTAAATGAACCAgtggggcactgactaatatgtgtgtagtggggttcaggggagggaggcct Alignment from Exonerate_coding2genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG cccactctgagacttggaacaccttttactttctgttgcaatttccacagTTCACCAAGTGAAATTTGGTGCTCCCTCGTCGGAGGAGACAGACCCTCTAAATGAACCAgtggggcactgactaatatgtgtgtagtggggttcaggggagggaggcct Alignment from GeneWise TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG cccactctgagacttggaacaccttttactttctgttgcaatttccacagTTCACCAAGTGAAATTTGGTGCTCCCTCGTCGGAGGAGACAGACCCTCTAAATGAACCAgtggggcactgactaatatgtgtgtagtggggttcaggggagggaggcct #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTgg cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCTCCCTGGGAA-AGAGGAACTGAGTgggtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from CESAR TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgg cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTgggtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from Pairagon TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGGAGCCT cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTG------AGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa #### Map4k2_ID1638_17 --> 1 - 0 Original Alignment gAGCCTGACTATCCGG-CCAGCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcaggAGCCTGACTATCCGGCCCAG-CTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from CESAR gAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcaggAGCCTGACTATCCGGCCCAGCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from Spaln_aa2Genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcagGAGCCTGACTATCCGGCCCAGCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from Spaln_nt2Genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcagGAGCCTGACTATCCGGCCCAGCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from Pairagon GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcagGAGCCTGACTATCCGGCCCAGCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from Exonerate_protein2genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcagGAGCCTGACTATCCGGCCCAGCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from Exonerate_coding2genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcagGAGCCTGACTATCCGGCCCAGCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from GeneWise GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcagGAGCCTGACTATCCGGCCCAGCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc #### Map4k2_ID1643_22 --> 2 - 0 Original Alignment acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAA-CTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagacCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCTCAACCTGCACAAACCTGC-TGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from CESAR acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagacCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCTCAACCTGCACAAACCTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from Spaln_aa2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCTCAACCTGCACAAACCTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from Spaln_nt2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCTCAACCTGCACAAACCTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from Pairagon ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCTCAACCTGCACAAACCTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from Exonerate_protein2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCTCAACCTGCACAAACCTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from Exonerate_coding2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCTCAACCTGCACAAACCTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga Alignment from GeneWise ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACCTGCACGAACTGCACGAGGACACAATGGAGAAG ggctagaaacatatggcagcataacatggtgaccactcttgactctttagACCAGTTCCTGGTGGTAGGGGCTAAGGAGGGCTTCTATACCCTCAACCTGCACAAACCTGCTGAGGACAGAATGGAGAAGgtgagccttgttggcagtttaggacagaggcaaaggatggtggctactga #### Map4k2_ID1647_26 --> 2 - 0 Original Alignment ttCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTG-CAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagttCGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCCAAT-GTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from CESAR ttCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagttCGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from Spaln_aa2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from Spaln_nt2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from Pairagon TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from Exonerate_protein2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from Exonerate_coding2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca Alignment from GeneWise TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctgccctgtgacacacccgctcccagTTCGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCGAGCCTGCTACTGTTGCCAATGTATGAGCCTCTGCAGAAATTCCTGCTGCTAAAGgtagttgaccagaggacccttaaggaggtggggagccaacagactgaaca #### Map4k2_ID1650_29 --> 2 - 1 Original Alignment gcTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACC-TTTGACTTCACTATTGAGACTGTGg gttttagcagcaagccaggtgtaactacccagtgtctttggtattcccaggcTGTGTAAGGATTGTTAACCTACAGGGGGAACCCACTGCTGCACTTGCCCCTGAACTAACCCTTTG-CTTCACCATTGAGACTGTGggtatgaatgccagctgtggacgcaataatatctagtctggaagtctgtaa Alignment from CESAR gcTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGg gttttagcagcaagccaggtgtaactacccagtgtctttggtattcccaggcTGTGTAAGGATTGTTAACCTACAGGGGGAACCCACTGCTGCACTTGCCCCTGAACTAACCCTTTGCTTCACCATTGAGACTGTGggtatgaatgccagctgtggacgcaataatatctagtctggaagtctgtaa Alignment from Spaln_aa2Genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gttttagcagcaagccaggtgtaactacccagtgtctttggtattcccagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCCACTGCTGCACTTGCCCCTGAACTAACCCTTTGCTTCACCATTGAGACTGTGGgtatgaatgccagctgtggacgcaataatatctagtctggaagtctgtaa Alignment from Spaln_nt2Genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gttttagcagcaagccaggtgtaactacccagtgtctttggtattcccagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCCACTGCTGCACTTGCCCCTGAACTAACCCTTTGCTTCACCATTGAGACTGTGGgtatgaatgccagctgtggacgcaataatatctagtctggaagtctgtaa Alignment from Pairagon GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gttttagcagcaagccaggtgtaactacccagtgtctttggtattcccagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCCACTGCTGCACTTGCCCCTGAACTAACCCTTTGCTTCACCATTGAGACTGTGGgtatgaatgccagctgtggacgcaataatatctagtctggaagtctgtaa Alignment from Exonerate_protein2genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gttttagcagcaagccaggtgtaactacccagtgtctttggtattcccagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCCACTGCTGCACTTGCCCCTGAACTAACCCTTTGCTTCACCATTGAGACTGTGGgtatgaatgccagctgtggacgcaataatatctagtctggaagtctgtaa Alignment from Exonerate_coding2genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gttttagcagcaagccaggtgtaactacccagtgtctttggtattcccagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCCACTGCTGCACTTGCCCCTGAACTAACCCTTTGCTTCACCATTGAGACTGTGGgtatgaatgccagctgtggacgcaataatatctagtctggaagtctgtaa Alignment from GeneWise GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gttttagcagcaagccaggtgtaactacccagtgtctttggtattcccagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCCACTGCTGCACTTGCCCCTGAACTAACCCTTTGCTTCACCATTGAGACTGTGGgtatgaatgccagctgtggacgcaataatatctagtctggaagtctgtaa #### Map4k2_ID1651_30 --> 2 - 0 Original Alignment tgTGTCTGCAGGATAGTGTGCTG-GCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagtgTGTCTGCAGGATAGTGTGCTGCGCGTTCT-GAGCCATGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from CESAR tgTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagtgTGTCTGCAGGATAGTGTGCTGCGCGTTCTGAGCCATGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from Spaln_aa2Genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGCGCGTTCTGAGCCATGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from Spaln_nt2Genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGCGCGTTCTGAGCCATGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from Pairagon TGTGTCTGCAGGATAGTGTGCTG-GCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGCGCGTTCT-GAGCCATGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from Exonerate_protein2genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGCGCGTTCTGAGCCATGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from Exonerate_coding2genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGCGCGTTCTGAGCCATGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from GeneWise TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGCGCGTTCTGAGCCATGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag #### Map4k2_ID1652_31 --> 0 - 2 Original Alignment GTGACGCAGGAG-ATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACag ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGCATAACAG-TGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACaggtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from CESAR GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACag ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGCATAACAGTGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACaggtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from Spaln_aa2Genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGCATAACAGTGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from Spaln_nt2Genome GTGACGCAGGAG-ATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGCATAACAG-TGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from Pairagon GTGACGCAGGAG-ATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGCATAACAG-TGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from Exonerate_protein2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGCATAACAGTGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from Exonerate_coding2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGCATAACAGTGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from GeneWise GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGCATAACAGTGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCC-ACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCCACCAGCACAA-CCGAAGCAGGAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCCACCAGCACAACCGAAGCAGGAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCCACCAGCACAACCGAAGCAGGAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCCACCAGCACAACCGAAGCAGGAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Pairagon AACAGCGTCCTTT-CCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCCACCAGCAC-AACCGAAGCAGGAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCCACCAGCACAACCGAAGCAGGAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCCACCAGCACAACCGAAGCAGGAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCCACCAGCACAACCGAAGCAGGAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTC-ATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacagtgacaaagtgtttgtttttagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCCATTGTTC-TAGAGATCTAAAGgtaagctatgttcctatccctgtgacttgcagtgagtagtctgggtgacc Alignment from CESAR ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacagtgacaaagtgtttgtttttagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCCATTGTTCTAGAGATCTAAAGgtaagctatgttcctatccctgtgacttgcagtgagtagtctgggtgacc Alignment from Spaln_aa2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacagtgacaaagtgtttgtttttagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCCATTGTTCTAGAGATCTAAAGgtaagctatgttcctatccctgtgacttgcagtgagtagtctgggtgacc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacagtgacaaagtgtttgtttttagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCCATTGTTCTAGAGATCTAAAGgtaagctatgttcctatccctgtgacttgcagtgagtagtctgggtgacc Alignment from Pairagon ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTT-CATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacagtgacaaagtgtttgtttttagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCCATTGTTC-TAGAGATCTAAAGgtaagctatgttcctatccctgtgacttgcagtgagtagtctgggtgacc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacagtgacaaagtgtttgtttttagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCCATTGTTCTAGAGATCTAAAGgtaagctatgttcctatccctgtgacttgcagtgagtagtctgggtgacc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacagtgacaaagtgtttgtttttagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCCATTGTTCTAGAGATCTAAAGgtaagctatgttcctatccctgtgacttgcagtgagtagtctgggtgacc Alignment from GeneWise ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgccatttcctgtttcactttcagacagtgacaaagtgtttgtttttagATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCCATTGTTCTAGAGATCTAAAGgtaagctatgttcctatccctgtgacttgcagtgagtagtctgggtgacc #### Mark2_ID2116_5 --> 2 - 1 Original Alignment ttAAGTTGTTTGAAGTGATC-GAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg aatctggacacaggtgtgcctctgagcctccctccctgtccttcccccagttAAGTGGTTTGAGGTCATTCGATACTG-GAAGACACTCTACCTTGTTATGGAGTATGCCAGTGGTggtatgtctgacactgtcccccatgtttgtctctcccctctctgctcttgg Alignment from CESAR ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg aatctggacacaggtgtgcctctgagcctccctccctgtccttcccccagttAAGTGGTTTGAGGTCATTCGATACTGGAAGACACTCTACCTTGTTATGGAGTATGCCAGTGGTggtatgtctgacactgtcccccatgtttgtctctcccctctctgctcttgg Alignment from Spaln_aa2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagcctccctccctgtccttcccccagTTAAGTGGTTTGAGGTCATTCGATACTGGAAGACACTCTACCTTGTTATGGAGTATGCCAGTGGTGgtatgtctgacactgtcccccatgtttgtctctcccctctctgctcttgg Alignment from Spaln_nt2Genome TTAAGTTGTTTGAAGTGAT-CGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagcctccctccctgtccttcccccagTTAAGTGGTTTGAGGTCATTCGATACTG-GAAGACACTCTACCTTGTTATGGAGTATGCCAGTGGTGgtatgtctgacactgtcccccatgtttgtctctcccctctctgctcttgg Alignment from Pairagon TTAAGTTGTTTGAAGTGA-TCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagcctccctccctgtccttcccccagTTAAGTGGTTTGAGGTCATTCGATACTG-GAAGACACTCTACCTTGTTATGGAGTATGCCAGTGGTGgtatgtctgacactgtcccccatgtttgtctctcccctctctgctcttgg Alignment from Exonerate_protein2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagcctccctccctgtccttcccccagTTAAGTGGTTTGAGGTCATTCGATACTGGAAGACACTCTACCTTGTTATGGAGTATGCCAGTGGTGgtatgtctgacactgtcccccatgtttgtctctcccctctctgctcttgg Alignment from Exonerate_coding2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagcctccctccctgtccttcccccagTTAAGTGGTTTGAGGTCATTCGATACTGGAAGACACTCTACCTTGTTATGGAGTATGCCAGTGGTGgtatgtctgacactgtcccccatgtttgtctctcccctctctgctcttgg Alignment from GeneWise TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagcctccctccctgtccttcccccagTTAAGTGGTTTGAGGTCATTCGATACTGGAAGACACTCTACCTTGTTATGGAGTATGCCAGTGGTGgtatgtctgacactgtcccccatgtttgtctctcccctctctgctcttgg #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTAC-TTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACCTTGC-GAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAggtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACCTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAggtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACCTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACCTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACCTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACCTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACCTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACCTTGCGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAAC-CCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccaggGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCCACGGCCAT-CGCCATGCCGCGAATAGTGGCAGAATACcgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccaggGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCCACGGCCATCGCCATGCCGCGAATAGTGGCAGAATACcgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCCACGGCCATCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCCACGGCCATCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAA-CCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCCACGGCCAT-CGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCCACGGCCATCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCCACGGCCATCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCCACGGCCATCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg #### Mta2_ID2532_5 --> 1 - 0 Original Alignment gGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATC-TTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcaggGTAAAGTGCAGCGTGACTCTCTTGAATGAGACAGACATCCTTAAACCAGT-TCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from CESAR gGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcaggGTAAAGTGCAGCGTGACTCTCTTGAATGAGACAGACATCCTTAAACCAGTTCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from Spaln_aa2Genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagGGTAAAGTGCAGCGTGACTCTCTTGAATGAGACAGACATCCTTAAACCAGTTCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from Spaln_nt2Genome ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagggtaaagtgcagcgtgactctcttgaatgagacagacatccttaaaccagttctagacaaggaagtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from Pairagon GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACAT-CTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagGGTAAAGTGCAGCGTGACTCTCTTGAATGAGACAGACATCCTTAAACCAGT-TCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from Exonerate_protein2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagGGTAAAGTGCAGCGTGACTCTCTTGAATGAGACAGACATCCTTAAACCAGTTCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from Exonerate_coding2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagGGTAAAGTGCAGCGTGACTCTCTTGAATGAGACAGACATCCTTAAACCAGTTCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from GeneWise GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagGGTAAAGTGCAGCGTGACTCTCTTGAATGAGACAGACATCCTTAAACCAGTTCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAA-TTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg gcagagggtctgcaacagaaccaacttgcccttggctctgttctctgcagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGCTTCCAAG-TGAAATCCCAGATCGTTTGGCAGAGggtgagcaacagaaccaggttgaacatgacattttctgttgacagcttgat Alignment from CESAR GCAGAGg GCAGAGggtctgcaacagaaccaacttgcccttggctctgttctctgcaggagtgctttttctattcactggtgtttgatcctgtgcagaagacacttctggcagatcaaggggagatcagggttggttgcacgcttccaagtgaaatcccagatcgtttggcagagggtgagcaacagaaccaggttgaacatgacattttctgttgacagcttgat Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcagagggtctgcaacagaaccaacttgcccttggctctgttctctgcagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGCTTCCAAGTGAAATCCCAGATCGTTTGGCAGAGGgtgagcaacagaaccaggttgaacatgacattttctgttgacagcttgat Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcagagggtctgcaacagaaccaacttgcccttggctctgttctctgcagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGCTTCCAAGTGAAATCCCAGATCGTTTGGCAGAGGgtgagcaacagaaccaggttgaacatgacattttctgttgacagcttgat Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcagagggtctgcaacagaaccaacttgcccttggctctgttctctgcagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGCTTCCAAGTGAAATCCCAGATCGTTTGGCAGAGGgtgagcaacagaaccaggttgaacatgacattttctgttgacagcttgat Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcagagggtctgcaacagaaccaacttgcccttggctctgttctctgcagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGCTTCCAAGTGAAATCCCAGATCGTTTGGCAGAGGgtgagcaacagaaccaggttgaacatgacattttctgttgacagcttgat Alignment from Exonerate_coding2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcagagggtctgcaacagaaccaacttgcccttggctctgttctctgcagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGCTTCCAAGTGAAATCCCAGATCGTTTGGCAGAGGgtgagcaacagaaccaggttgaacatgacattttctgttgacagcttgat Alignment from GeneWise GCAGAGG GCAGAGGgtctgcaacagaaccaacttgcccttggctctgttctctgcaggagtgctttttctattcactggtgtttgatcctgtgcagaagacacttctggcagatcaaggggagatcagggttggttgcacgcttccaagtgaaatcccagatcgtttggcagagggtgagcaacagaaccaggttgaacatgacattttctgttgacagcttgat #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCT-CTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg tatgacttatttccctttctccctccagttctctgtttttcctattttaggaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCCTCACAG-CCGACAGATTGATCAATTTCTTGTGGTGGCCcggtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg tatgacttatttccctttctccctccagttctctgtttttcctattttaggaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCCTCACAGCCGACAGATTGATCAATTTCTTGTGGTGGCCcggtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCCTCACAGCCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCCTCACAGCCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAA-CCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCCTCACAG-CCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCCTCACAGCCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCCTCACAGCCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCGA-- tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCCTCACAGCCGACAGATTGATCAATTTCTTGTGGTGGCCCGGTAgttgggatgatcagggaggtggcctagggcgcaatggactgaaatct #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCCCTAGAC-TGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagcGCTGTGGGAACTTTTGTGAGAGCCCTAGACCTGCACCAGCT-AATTCGGCAGTCAAGCTTGCACATGAGTGCA------GCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagcGCTGTGGGAACTTTTGTGAGAGCCCTAGACCTGCACCAGCTAATTCGGCAGTCAAGCTTGCACATGAGTGCA------GCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTGTGAGAGCCCTAGACCTGCACCAGCTAATTCGGCAGTCAAGCTTGCACATGAGT------GCAGCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTGTGAGAGCCCTAGACCTGCACCAGCTAATTCGGCAGTCAAGCTTGCACATGAG------TGCAGCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGA-CTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTGTGAGAGCCCTAGACCTGCACCAGCT-AATTCGGCAGTCAAGCTTGCACATGAGTGCA------GCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTGTGAGAGCCCTAGACCTGCACCAGCTAATTCGGCAGTCAAGCTTGCACATGAGT------GCAGCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTGTGAGAGCCCTAGACCTGCACCAGCTAATTCGGCAGTCAAGCTTGCACATGAGT------GCAGCGTCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaatttcgatggggagaaccctcctctagtctttgtttattgttcagCGCTGTGGGAACTTTTGTGAGAGCCCTAGACCTGCACCAGCTAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCG------TCCCGAGATATCACTCTGgtaagagccaactgacagatagttgggtaggttaaggtgagagtggaggg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTG-GAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcatttagagagtagcaagcccttagttcctccttgggctttccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGCGAGA-GTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagggatcaagactaagaggggagagaatgatgatggcactgggaaca Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcatttagagagtagcaagcccttagttcctccttgggctttccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGCGAGAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagggatcaagactaagaggggagagaatgatgatggcactgggaaca Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcatttagagagtagcaagcccttagttcctccttgggctttccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGCGAGAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagggatcaagactaagaggggagagaatgatgatggcactgggaaca Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcatttagagagtagcaagcccttagttcctccttgggctttccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGCGAGAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagggatcaagactaagaggggagagaatgatgatggcactgggaaca Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcatttagagagtagcaagcccttagttcctccttgggctttccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGCGAGAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagggatcaagactaagaggggagagaatgatgatggcactgggaaca Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcatttagagagtagcaagcccttagttcctccttgggctttccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGCGAGAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagggatcaagactaagaggggagagaatgatgatggcactgggaaca Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcatttagagagtagcaagcccttagttcctccttgggctttccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGCGAGAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagggatcaagactaagaggggagagaatgatgatggcactgggaaca Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aggcatttagagagtagcaagcccttagttcctccttgggctttccttagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCCATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTCTGCGAGAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagggatcaagactaagaggggagagaatgatgatggcactgggaaca #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCTGCT-GAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTta atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCACGAAGCAGACA-CAAACTGAAACAGGTCTACATCCCCACTtagtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTta atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCACGAAGCAGACACAAACTGAAACAGGTCTACATCCCCACTtagtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCACGAAGCAGACACAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Spaln_nt2Genome AAAAGATTGAAAGCTGCT-GAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCACGAAGCAGACA-CAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Pairagon AAAAGATTGAAAGCTGC-TGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCACGAAGCAGACA-CAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCACGAAGCAGACACAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Exonerate_coding2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCACGAAGCAGACACAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from GeneWise AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCACGAAGCAGACACAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGC-CTGACTTGTGAGAGCTGCCACa ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagtACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCCTGACTT-TGAGAGCTGTCACagtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagtACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCCTGACTTTGAGAGCTGTCACagtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCCTGACTTTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCC-TGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCCTGACTT-TGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGG-CCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCCTGACTT-TGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCCTGACTTTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCCTGACTTTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCCTGACTTTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATG-CAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagccACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCCAGTACCGAC-TTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagccACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCCAGTACCGACTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCCAGTACCGACTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCCAGTACCGACTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATG-CAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCCAGTACCGAC-TTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCCAGTACCGACTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCCAGTACCGACTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCCAGTACCGACTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGAC-ATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACCATCACAC-CAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACCATCACACCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACCATCACACCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACCATCACACCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGA-CATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACCATCACACC-AAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACCATCACACCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACCATCACACCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG atgacagtatctgctgggccattggacgataacttatttgtttcttttagGGTAAAGATGAATTTTTAGGTCAAAGCATCTGCTCTCCCCTGGTGAAACTGAACTCACAAACGGACCATCACACCAAGCTTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTCGTTACCGCAGAGTTGATTTTGAGGAACAAGgtaatgtatgttcatgctcatggattccacaagcttcttagagcacctca #### Myrf_ID2718_19 --> 1 - 1 Original Alignment cAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCC-ATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagtAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGA-CACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGggtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from CESAR cAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagtAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGggtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Spaln_aa2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Spaln_nt2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Pairagon CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCT-CCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGA-CACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Exonerate_protein2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Exonerate_coding2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from GeneWise CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTC-CCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagcCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCCACA-AAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from CESAR cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagcCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCCACAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCCACAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCCACAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCCACAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCCACAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCCACAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCCACAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGC-CACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCCACAAGC-GGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from CESAR GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCCACAAGCGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from Spaln_aa2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCCACAAGCGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from Spaln_nt2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCCACAAGCGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from Pairagon GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAG-CCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCCACAAGC-GGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCCACAAGCGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from Exonerate_coding2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCCACAAGCGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from GeneWise GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCCACAAGCGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAG-AAGGGCAAGCCCAACCCTGACCAGag tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccaggGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGCAAGGGCAAGC-CAACCCTGACCAGaggtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccaggGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGCAAGGGCAAGCCAACCCTGACCAGaggtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGCAAGGGCAAGCCAACCCTGACCAGAGgtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGCAAGGGCAAGCCAACCCTGACCAGAGgtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAG-AAGGGCAAGCCCAACCCTGACCAGAG tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGCAAGGGCAAG-CCAACCCTGACCAGAGgtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGCAAGGGCAAGCCAACCCTGACCAGAGgtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGCAAGGGCAAGCCAACCCTGACCAGAGgtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGG-- tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATTTCACTGAGACCACTGCCAACAACATGCGCAAGCAAGGGCAAGCCAACCCTGACCAGAGGTGgtgaggctgacctggccccaggacccctctcaccccctttccgatga #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGC-GCCTATCAGTTCTTCCGAGAGGCACTGca aatgagcactgactatgtctctaaaatgcagtgtttttgtattattctagcACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGTCGCCTATCAGT-CTTCCAGGAGACACTTcagtagccaataagacctaggtgtggtgcctcaaggtggtgagggaagtccc Alignment from CESAR cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca aatgagcactgactatgtctctaaaatgcagtgtttttgtattattctagcACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGTCGCCTATCAGTCTTCCAGGAGACACTTcagtagccaataagacctaggtgtggtgcctcaaggtggtgagggaagtccc Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaaatgcagtgtttttgtattattctagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGTCGCCTATCAGTCTTCCAGGAGACACTTCAgtagccaataagacctaggtgtggtgcctcaaggtggtgagggaagtccc Alignment from Spaln_nt2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGG-CGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaaatgcagtgtttttgtattattctagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGTCGCCTATCAG-TCTTCCAGGAGACACTTCAgtagccaataagacctaggtgtggtgcctcaaggtggtgagggaagtccc Alignment from Pairagon CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGG-CGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaaatgcagtgtttttgtattattctagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGTCGCCTATCAG-TCTTCCAGGAGACACTTCAgtagccaataagacctaggtgtggtgcctcaaggtggtgagggaagtccc Alignment from Exonerate_protein2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaaatgcagtgtttttgtattattctagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGTCGCCTATCAGTCTTCCAGGAGACACTTCAgtagccaataagacctaggtgtggtgcctcaaggtggtgagggaagtccc Alignment from Exonerate_coding2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaaatgcagtgtttttgtattattctagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGTCGCCTATCAGTCTTCCAGGAGACACTTCAgtagccaataagacctaggtgtggtgcctcaaggtggtgagggaagtccc Alignment from GeneWise CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaaatgcagtgtttttgtattattctagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGTCGCCTATCAGTCTTCCAGGAGACACTTCAgtagccaataagacctaggtgtggtgcctcaaggtggtgagggaagtccc #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATT-CAGATCCTGCAGCTCATGGCCAACag caggctcctttattgggtctaagcactcgatcccggccctgctctcccagcTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCCAGA-CCTCCAGCTCATGGCCAACaggtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from CESAR cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag caggctcctttattgggtctaagcactcgatcccggccctgctctcccagcTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCCAGACCTCCAGCTCATGGCCAACaggtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCCAGACCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCCAGACCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Pairagon CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCCAGACCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCCAGACCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCCAGACCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTTCTCATTCCAGACCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCT-TGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccaggTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGCTGGGAAAACA-TTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACtggtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccaggTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGCTGGGAAAACATTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACtggtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGCTGGGAAAACATTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGCTGGGAAAACATTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGC-TTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGCTGGGAAAACA-TTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGCTGGGAAAACATTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGCTGGGAAAACATTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG taaatagctgtcttcagaggtccctgtcttctcttctctccttctcccagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACTGATGATCGTGCCTGGTACCTCATTGCGCTGGGAAAACATTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCTTGTACTGgtgagtacttacgccaacagtggggtagagcggaggaagaggaggaagct #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACA-GCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg agtcagaggcttccactaatagattttataccagactcctccctcctcagaGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACACGCACCTGGGC-GGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTggtgagctcaagtccaggaatgtcagggggggaaggccacatctttctgtg Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg agtcagaggcttccactaatagattttataccagactcctccctcctcagaGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACACGCACCTGGGCGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTggtgagctcaagtccaggaatgtcagggggggaaggttttctctttcatgt Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACACGCACCTGGGCGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggccacatctttctgtg Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACACGCACCTGGGCGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggccacatctttctgtg Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACACGCACCTGGGCGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggccacatctttctgtg Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACACGCACCTGGGCGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggccacatctttctgtg Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACACGCACCTGGGCGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggccacatctttctgtg Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACACGCACCTGGGCGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGGTGAGCTCAAGTCCAGGAATGTCAGGGGGGGAAGGCCACATCTTTCTGTG #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGG-GCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagtAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGGGGCGCCCTAGGCT-TGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGaggtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagtAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGGGGCGCCCTAGGCTTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGaggtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGGGGCGCCCTAGGCTTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGGGGCGCCCTAGGCTTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGG-GCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGGGGCGCCCTAGGCT-TGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGGGGCGCCCTAGGCTTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from Exonerate_coding2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGGGGCGCCCTAGGCTTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGGGGCGCCCTAGGCTTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct #### Naaladl1_ID1448_7 --> 1 - 1 Original Alignment tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGG-ACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagtGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGCACCTCTT-CAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTggtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from CESAR tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagtGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGCACCTCTTCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTggtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Spaln_aa2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGCACCTCTTCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Spaln_nt2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGCACCTCTTCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Pairagon TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGG-ACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGCACCTCTT-CAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Exonerate_protein2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGCACCTCTTCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Exonerate_coding2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGCACCTCTTCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from GeneWise TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGCACCTCTTCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc #### Naaladl1_ID1451_10 --> 0 - 1 Original Alignment GAGTTTCTCAGCAAGCTGCAGGAGCGCACG-GTGGCCTACATCAATGTGGACATCTCTGTTTTCt ggtggtggattgatgtcacttgtcctgctggtgttgctgtctgcgagcagGAGTTTCTCAGCAAGCTGCAAGAGCGCACACGTGGACTATA-CAATGTGGACATCTCTGTTTTTtgtaacgcagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from CESAR GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt ggtggtggattgatgtcacttgtcctgctggtgttgctgtctgcgagcagGAGTTTCTCAGCAAGCTGCAAGAGCGCACACGTGGACTATACAATGTGGACATCTCTGTTTTTtgtaacgcagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Spaln_aa2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT ggtggtggattgatgtcacttgtcctgctggtgttgctgtctgcgagcagGAGTTTCTCAGCAAGCTGCAAGAGCGCACACGTGGACTATACAATGTGGACATCTCTGTTTTTTgtaacgcagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Spaln_nt2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT ggtggtggattgatgtcacttgtcctgctggtgttgctgtctgcgagcagGAGTTTCTCAGCAAGCTGCAAGAGCGCACACGTGGACTATACAATGTGGACATCTCTGTTTTTTgtaacgcagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Pairagon GAGTTTCTCAGCAAGCTGCAGGAGCGCACG-GTGGCCTACATCAATGTGGACATCTCTGTTTTCT ggtggtggattgatgtcacttgtcctgctggtgttgctgtctgcgagcagGAGTTTCTCAGCAAGCTGCAAGAGCGCACACGTGGACTATA-CAATGTGGACATCTCTGTTTTTTgtaacgcagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Exonerate_protein2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT ggtggtggattgatgtcacttgtcctgctggtgttgctgtctgcgagcagGAGTTTCTCAGCAAGCTGCAAGAGCGCACACGTGGACTATACAATGTGGACATCTCTGTTTTTTgtaacgcagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Exonerate_coding2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT ggtggtggattgatgtcacttgtcctgctggtgttgctgtctgcgagcagGAGTTTCTCAGCAAGCTGCAAGAGCGCACACGTGGACTATACAATGTGGACATCTCTGTTTTTTgtaacgcagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from GeneWise GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT ggtggtggattgatgtcacttgtcctgctggtgttgctgtctgcgagcagGAGTTTCTCAGCAAGCTGCAAGAGCGCACACGTGGACTATACAATGTGGACATCTCTGTTTTTTgtaacgcagggttggccagctgggctcaggctgggaaggggacgggttag #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCACAGGGA-ACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagccAATGCTACTCTCCAGGCCCAGGGACACACCAC-TGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagccAATGCTACTCTCCAGGCCCAGGGACACACCACTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGACACACCACTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGACACACCACTGTACAAAGTGTACTATTCTCTTCAACCAAAGatgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Pairagon CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGACACACCACTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGACACACCACTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGACACACCACTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGACACACCACTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt #### Naaladl1_ID1453_12 --> 0 - 2 Original Alignment ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACC-AACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtgttaaagctgggttttgccagctatttcattccctctccctgtccagATCAGTGCGCCAGGGTCCAGTGGCCTCAGGATCTATGATAACTGGATCCGATATACCCAACCGCA-TAGTCCAGTATATGGACTGGTTCCCaggtaagaccagaaaccagttaggtagggggcccattggcccagtatgtcca Alignment from CESAR ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtgttaaagctgggttttgccagctatttcattccctctccctgtccagATCAGTGCGCCAGGGTCCAGTGGCCTCAGGATCTATGATAACTGGATCCGATATACCCAACCGCATAGTCCAGTATATGGACTGGTTCCCaggtaagaccagaaaccagttaggtagggggcccattggcccagtatgtcca Alignment from Spaln_aa2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttgccagctatttcattccctctccctgtccagATCAGTGCGCCAGGGTCCAGTGGCCTCAGGATCTATGATAACTGGATCCGATATACCCAACCGCATAGTCCAGTATATGGACTGGTTCCCAGgtaagaccagaaaccagttaggtagggggcccattggcccagtatgtcca Alignment from Spaln_nt2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttgccagctatttcattccctctccctgtccagATCAGTGCGCCAGGGTCCAGTGGCCTCAGGATCTATGATAACTGGATCCGATATACCCAACCGCATAGTCCAGTATATGGACTGGTTCCCAGgtaagaccagaaaccagttaggtagggggcccattggcccagtatgtcca Alignment from Pairagon ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATA-CCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttgccagctatttcattccctctccctgtccagATCAGTGCGCCAGGGTCCAGTGGCCTCAGGATCTATGATAACTGGATCCGATATACCCAACCGCA-TAGTCCAGTATATGGACTGGTTCCCAGgtaagaccagaaaccagttaggtagggggcccattggcccagtatgtcca Alignment from Exonerate_protein2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttgccagctatttcattccctctccctgtccagATCAGTGCGCCAGGGTCCAGTGGCCTCAGGATCTATGATAACTGGATCCGATATACCCAACCGCATAGTCCAGTATATGGACTGGTTCCCAGgtaagaccagaaaccagttaggtagggggcccattggcccagtatgtcca Alignment from Exonerate_coding2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttgccagctatttcattccctctccctgtccagATCAGTGCGCCAGGGTCCAGTGGCCTCAGGATCTATGATAACTGGATCCGATATACCCAACCGCATAGTCCAGTATATGGACTGGTTCCCAGgtaagaccagaaaccagttaggtagggggcccattggcccagtatgtcca Alignment from GeneWise ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagctgggttttgccagctatttcattccctctccctgtccagATCAGTGCGCCAGGGTCCAGTGGCCTCAGGATCTATGATAACTGGATCCGATATACCCAACCGCATAGTCCAGTATATGGACTGGTTCCCAGgtaagaccagaaaccagttaggtagggggcccattggcccagtatgtcca #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAG-TTAGAGAAACAGAACATCAGCCTGg gacaaaaggatgggatgtagatgtggcctgctttgtttgttttttaataggtTTTAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTTGGCACCCAGCTTAGAGAAGC-GAATGTCAGCCTGggtaagtcagggaactctgcatccgcaggtagggcttgacatgtttcactc Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaaaggatgggatgtagatgtggcctgctttgtttgttttttaataggtTTTAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTTGGCACCCAGCTTAGAGAAGCGAATGTCAGCCTGggtaagtcagggaactctgcatccgcaggtagggctactatgtttcttgtg Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaaggatgggatgtagatgtggcctgctttgtttgttttttaatagGTTTTAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTTGGCACCCAGCTTAGAGAAGCGAATGTCAGCCTGGgtaagtcagggaactctgcatccgcaggtagggcttgacatgtttcactc Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAG-TTAGAGAAACAGAACATCAGCCTGG gacaaaaggatgggatgtagatgtggcctgctttgtttgttttttaatagGTTTTAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTTGGCACCCAGCTTAGAGAAGC-GAATGTCAGCCTGGgtaagtcagggaactctgcatccgcaggtagggcttgacatgtttcactc Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAG-TTAGAGAAACAGAACATCAGCCTGG gacaaaaggatgggatgtagatgtggcctgctttgtttgttttttaatagGTTTTAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTTGGCACCCAGCTTAGAGAAGC-GAATGTCAGCCTGGgtaagtcagggaactctgcatccgcaggtagggcttgacatgtttcactc Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaaggatgggatgtagatgtggcctgctttgtttgttttttaatagGTTTTAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTTGGCACCCAGCTTAGAGAAGCGAATGTCAGCCTGGgtaagtcagggaactctgcatccgcaggtagggcttgacatgtttcactc Alignment from Exonerate_coding2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaaggatgggatgtagatgtggcctgctttgtttgttttttaatagGTTTTAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTTGGCACCCAGCTTAGAGAAGCGAATGTCAGCCTGGgtaagtcagggaactctgcatccgcaggtagggcttgacatgtttcactc Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaaggatgggatgtagatgtggcctgctttgtttgttttttaatagGTTTTAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTTGGCACCCAGCTTAGAGAAGCGAATGTCAGCCTGGgtaagtcagggaactctgcatccgcaggtagggcttgacatgtttcactc #### Naaladl1_ID1457_16 --> 2 - 2 Original Alignment ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCA-TCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagggCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTGCCCTCATTGG-TGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTgagtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from CESAR ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagggCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTGCCCTCATTGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTgagtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from Spaln_aa2Genome GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTGCCCTCATTGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from Spaln_nt2Genome GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTGCCCTCATTGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from Pairagon GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTGCCCTCATTGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from Exonerate_protein2genome GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTGCCCTCATTGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from Exonerate_coding2genome GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTGCCCTCATTGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from GeneWise -------------------------------------------------GGGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA AGGGAACTCTGCATCCGCAGGTAGGGCTACTATGTTTCTTGTGCTTATAGGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTGCCCTCATTGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg #### Ndufs8_ID193_3 --> 2 - 1 Original Alignment agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATT---CTGATG-TGGACAGAACTCATCCGAg cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagagTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGCTGGA-AGAACTAATCCGGggtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from CESAR agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAg cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagagTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGCTGGAAGAACTAATCCGGggtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from Spaln_aa2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGCTGGAAGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from Spaln_nt2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG----TGGACAGAACTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGCTGGA-AGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from Pairagon AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATG----TGGACAGAACTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGCTGGA-AGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from Exonerate_protein2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGG---ACAGAACTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGCTGGAAGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from Exonerate_coding2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGG---ACAGAACTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGCTGGAAGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from GeneWise AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAA---CTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGCTGGAAGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCAC-ACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcaggtGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACCACCA-TTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcaggtGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACCACCATTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACCACCATTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACCACCATTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACCACCATTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACCACCATTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACCACCATTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACCACCATTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAAC-CTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggctctgtaggagagccatgacagcccgtcattcttgtcttccaggtGGTGTCACAGGTGGCTGGGATAATCCTCCTTG-TGTGACTCCTGGTGGCTCATCTACTCCATTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtttctgacctcaaactcccttaaactcctcacagctgggagtgttcccc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggctctgtaggagagccatgacagcccgtcattcttgtcttccaggtGGTGTCACAGGTGGCTGGGATAATCCTCCTTGTGTGACTCCTGGTGGCTCATCTACTCCATTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtttctgacctcaaactcccttaaactcctcacagctgggagtgttcccc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggctctgtaggagagccatgacagcccgtcattcttgtcttccagGTGGTGTCACAGGTGGCTGGGATAATCCTCCTTGTGTGACTCCTGGTGGCTCATCTACTCCATTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtttctgacctcaaactcccttaaactcctcacagctgggagtgttcccc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggctctgtaggagagccatgacagcccgtcattcttgtcttccagGTGGTGTCACAGGTGGCTGGGATAATCCTCCTTGTGTGACTCCTGGTGGCTCATCTACTCCATTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtttctgacctcaaactcccttaaactcctcacagctgggagtgttcccc Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAA-CCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggctctgtaggagagccatgacagcccgtcattcttgtcttccagGTGGTGTCACAGGTGGCTGGGATAATCCTCCTTG-TGTGACTCCTGGTGGCTCATCTACTCCATTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtttctgacctcaaactcccttaaactcctcacagctgggagtgttcccc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggctctgtaggagagccatgacagcccgtcattcttgtcttccagGTGGTGTCACAGGTGGCTGGGATAATCCTCCTTGTGTGACTCCTGGTGGCTCATCTACTCCATTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtttctgacctcaaactcccttaaactcctcacagctgggagtgttcccc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG gagagggctctgtaggagagccatgacagcccgtcattcttgtcttccagGTGGTGTCACAGGTGGCTGGGATAATCCTCCTTGTGTGACTCCTGGTGGCTCATCTACTCCATTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtttctgacctcaaactcccttaaactcctcacagctgggagtgttcccc Alignment from GeneWise ----------------------------------------------------GGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG GAGAGGGCTCTGTAGGAGAGCCATGACAGCCCGTCATTCTTGTCTTCCAGGTGGTGTCACAGGTGGCTGGGATAATCCTCCTTGTGTGACTCCTGGTGGCTCATCTACTCCATTGATTCCCAAATCTGTGTGTGAGACAGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACAGCTGCAGTTATTGTTATGGATCGCTCAgtttctgacctcaaactcccttaaactcctcacagctgggagtgttcccc #### Ndufv1_ID280_2 --> 0 - 2 Original Alignment ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGG-ATCTTTACCAACCTGTATGGGCGCCATGACTGGag ccaacctcatggttgctaagtctggatccgtttgcttgtttgttttccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGCATCTTTACCA-TCTGTATGGGCGCCATGACTGGaggtaggtcaggggccatggcctcagaacagaactatcttccctatctaccg Alignment from CESAR ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGag ccaacctcatggttgctaagtctggatccgtttgcttgtttgttttccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGCATCTTTACCATCTGTATGGGCGCCATGACTGGaggtaggtcaggggccatggcctcagaacagaactttttgtctcttctttat Alignment from Spaln_aa2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaagtctggatccgtttgcttgtttgttttccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGCATCTTTACCATCTGTATGGGCGCCATGACTGGAGgtaggtcaggggccatggcctcagaacagaactatcttccctatctaccg Alignment from Spaln_nt2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaagtctggatccgtttgcttgtttgttttccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGCATCTTTACCATCTGTATGGGCGCCATGACTGGAGgtaggtcaggggccatggcctcagaacagaactatcttccctatctaccg Alignment from Pairagon ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGG-ATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaagtctggatccgtttgcttgtttgttttccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGCATCTTTACC-ATCTGTATGGGCGCCATGACTGGAGgtaggtcaggggccatggcctcagaacagaactatcttccctatctaccg Alignment from Exonerate_protein2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaagtctggatccgtttgcttgtttgttttccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGCATCTTTACCATCTGTATGGGCGCCATGACTGGAGgtaggtcaggggccatggcctcagaacagaactatcttccctatctaccg Alignment from Exonerate_coding2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaagtctggatccgtttgcttgtttgttttccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGCATCTTTACCATCTGTATGGGCGCCATGACTGGAGgtaggtcaggggccatggcctcagaacagaactatcttccctatctaccg Alignment from GeneWise ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaagtctggatccgtttgcttgtttgttttccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGCATCTTTACCATCTGTATGGGCGCCATGACTGGAGgtaggtcaggggccatggcctcagaacagaactatcttccctatctaccg #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGA-CCCAAGGACATGACTGCTca gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCCA-GGACATGACTGCTcagtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCCAGGACATGACTGCTcagtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCCAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCCAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCCAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCCAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCCAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCCAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATC-TCCCAGCCCATCCATGACAGCa gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagagGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCCTCCCAGC-CATCCATGACAGCagtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagagGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCCTCCCAGCCATCCATGACAGCagtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCCTCCCAGCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCCTCCCAGCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCCTCCCAGCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCCTCCCAGCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCCTCCCAGCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCCTCCCAGCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGG-ACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAg tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGCACACCAC-CTATCACAAGATGAAGATCGAGAGGCCTGTAACAGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAggtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAg tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGCACACCACCTATCACAAGATGAAGATCGAGAGGCCTGTAACAGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAggtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGCACACCACCTATCACAAGATGAAGATCGAGAGGCCTGTAACAGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGCACACCACCTATCACAAGATGAAGATCGAGAGGCCTGTAACAGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Pairagon TATGCCATTGTGTTCCGG-ACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGCACACCA-CCTATCACAAGATGAAGATCGAGAGGCCTGTAACAGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGCACACCACCTATCACAAGATGAAGATCGAGAGGCCTGTAACAGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGCACACCACCTATCACAAGATGAAGATCGAGAGGCCTGTAACAGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGCACACCACCTATCACAAGATGAAGATCGAGAGGCCTGTAACAGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGA-CGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tccgggagagtcctggatggcactttagttactctgattctcttttataggtGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACCGGGATA-CGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAggtgggtgtcaggaatgcttgagggttagcatgcaccatactgtatttctc Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tccgggagagtcctggatggcactttagttactctgattctcttttataggtGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACCGGGATACGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAggtgggtgtcaggaatgcttgagggttagcatgcaccactgtgtgtttctg Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACCGGGATACGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccatactgtatttctc Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACCGGGATACGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccatactgtatttctc Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACCGGGATACGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccatactgtatttctc Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACCGGGATACGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccatactgtatttctc Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACCGGGATACGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccatactgtatttctc Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACCGGGATACGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccatactgtatttctc #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTC-ACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagcCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTTATCATGCTCAGTACCTTGGCGTAATAAACCTCCACCA-CCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagcCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTTATCATGCTCAGTACCTTGGCGTAATAAACCTCCACCACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTTATCATGCTCAGTACCTTGGCGTAATAAACCTCCACCACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTTATCATGCTCAGTACCTTGGCGTAATAAACCTCCACCACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTTATCATGCTCAGTACCTTGGCGTAATAAACCTCCACCACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTTATCATGCTCAGTACCTTGGCGTAATAAACCTCCACCACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTTATCATGCTCAGTACCTTGGCGTAATAAACCTCCACCACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtaactggggttttgaagaacaacagaacttggggtcatctacagCCCACTGCACCTAGCCATCATCCACGGGCAGACAGGTGTCATTGAGCAGATAGCCCATGTCATTTATCATGCTCAGTACCTTGGCGTAATAAACCTCCACCACCACCTGCACCAGgtactcggaaggcttttttaagagattgaaagcaagaagtctaaagctgg #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCAC-GGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCAGACCCCACGCTGCTGGATAGGCATCGGAGACTCTG-CCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGggtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCAC-GGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCAGACCCCACGCTGCTGGATAGGCATCGGAGACTCTG-CCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGggtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCAGACCCCACGCTGCTGGATAGGCATCGGAGACTCTGCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCAGACCCCACGCTGCTGGATAGGCATCGGAGACTCTGCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCA-CGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCAGACCCCACGCTGCTGGATAGGCATCGGAGACTCTG-CCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCAGACCCCACGCTGCTGGATAGGCATCGGAGACTCTGCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCAGACCCCACGCTGCTGGATAGGCATCGGAGACTCTGCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCAGACCCCACGCTGCTGGATAGGCATCGGAGACTCTGCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGAC-CTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactaggtGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGACCCTCA-TTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactaggtGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGACCCTCATTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGACCCTCATTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGACCCTCATTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGACCCTCATTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGACCCTCATTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGACCCTCATTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGACCCTCATTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACC-ACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCCACAG-GCCACCCCTGGCCCCACCCAGCCCTGCAggtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from CESAR GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCCACAGGCCACCCCTGGCCCCACCCAGCCCTGCAggtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCCACAGGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCCACAGGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Pairagon GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCCACAGGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCCACAGGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCCACAGGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCCACAGGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag #### Nfkb2_ID9843_21 --> 0 - 1 Original Alignment CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAA-GGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg actccacaccctaatcatcactcagacccctgtgtgccctttctctacagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAACGGTC-TGAGACCCGTGACAAGCTGCCAAGCACAggcaagtacaagcaccctggaaggtgtgtctgggcttagaggagaaagcat Alignment from CESAR CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg actccacaccctaatcatcactcagacccctgtgtgccctttctctacagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAACGGTCTGAGACCCGTGACAAGCTGCCAAGCACAggcaagtacaagcaccctggaaggtgtgtctgggcttagaggagaaagcat Alignment from Spaln_aa2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagacccctgtgtgccctttctctacagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAACGGTCTGAGACCCGTGACAAGCTGCCAAGCACAGgcaagtacaagcaccctggaaggtgtgtctgggcttagaggagaaagcat Alignment from Spaln_nt2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagacccctgtgtgccctttctctacagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAACGGTCTGAGACCCGTGACAAGCTGCCAAGCACAGgcaagtacaagcaccctggaaggtgtgtctgggcttagaggagaaagcat Alignment from Pairagon CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagacccctgtgtgccctttctctacagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAACGGTCTGAGACCCGTGACAAGCTGCCAAGCACAGgcaagtacaagcaccctggaaggtgtgtctgggcttagaggagaaagcat Alignment from Exonerate_protein2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagacccctgtgtgccctttctctacagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAACGGTCTGAGACCCGTGACAAGCTGCCAAGCACAGgcaagtacaagcaccctggaaggtgtgtctgggcttagaggagaaagcat Alignment from Exonerate_coding2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagacccctgtgtgccctttctctacagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAACGGTCTGAGACCCGTGACAAGCTGCCAAGCACAGgcaagtacaagcaccctggaaggtgtgtctgggcttagaggagaaagcat Alignment from GeneWise CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAGCA-- actccacaccctaatcatcactcagacccctgtgtgccctttctctacagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAACGGTCTGAGACCCGTGACAAGCTGCCAAGCACAGGCAAgtacaagcaccctggaaggtgtgtctgggcttagaggagaaagcat #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACAT-CTCTACAAGACACTGTTCACATTACATGCAg gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcataggaGATGTTTTGAATATTGACCCTATGAAATTTTATACACATCCTCTTCC-GACACTGTTTACGTTACATGCAggtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from CESAR gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcataggaGATGTTTTGAATATTGACCCTATGAAATTTTATACACATCCTCTTCCGACACTGTTTACGTTACATGCAggtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTGACCCTATGAAATTTTATACACATCCTCTTCCGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTGACCCTATGAAATTTTATACACATCCTCTTCCGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Pairagon GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTGACCCTATGAAATTTTATACACATCCTCTTCCGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTGACCCTATGAAATTTTATACACATCCTCTTCCGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTGACCCTATGAAATTTTATACACATCCTCTTCCGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from GeneWise -------------------------------------------------GGTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG GTCACTGAAGACTGATTTAACCAAAGTTTTCTACCTTTGTGTCTTCATAGGAGATGTTTTGAATATTGACCCTATGAAATTTTATACACATCCTCTTCCGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTT-CAAACTGCTTTTCATATTCTTTCTGGACAAg agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCCAAACTG-TTTTCATATTCTTTCTGGACAAggtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCCAAACTGTTTTCATATTCTTTCTGGACAAggtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCCAAACTGTTTTCATATTCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCCAAACTGTTTTCATATTCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCCAAACTGTTTTCATATTCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCCAAACTGTTTTCATATTCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCCAAACTGTTTTCATATTCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA--------------------------------------------------- agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCCAAACTGTTTTCATATTCTTTCTGGACAAGGTAAGTTAGTCCATTTGGCCTCCTTTCCCCTGTCACTGAAGACTGATTTA #### Npas4_ID776_5 --> 1 - 1 Original Alignment tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTA-CACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt ttttgagtaaggtacacagaaggccgactttgacttgtgcttcccttcagtGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACCACCCTG-GGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGtgtaagattccagggaggccatacatcagtgttgtctgactccggcttttt Alignment from CESAR tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt ttttgagtaaggtacacagaaggccgactttgacttgtgcttcccttcagtGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACCACCCTGGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGtgtaagattccagggaggccatacatcagtgttgtctgactccggcttttt Alignment from Spaln_aa2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaggccgactttgacttgtgcttcccttcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACCACCCTGGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagattccagggaggccatacatcagtgttgtctgactccggcttttt Alignment from Spaln_nt2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaggccgactttgacttgtgcttcccttcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACCACCCTGGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagattccagggaggccatacatcagtgttgtctgactccggcttttt Alignment from Pairagon TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaggccgactttgacttgtgcttcccttcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACCACCCTGGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagattccagggaggccatacatcagtgttgtctgactccggcttttt Alignment from Exonerate_protein2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaggccgactttgacttgtgcttcccttcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACCACCCTGGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagattccagggaggccatacatcagtgttgtctgactccggcttttt Alignment from Exonerate_coding2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaggccgactttgacttgtgcttcccttcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACCACCCTGGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagattccagggaggccatacatcagtgttgtctgactccggcttttt Alignment from GeneWise TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaggccgactttgacttgtgcttcccttcagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACCACCCTGGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagattccagggaggccatacatcagtgttgtctgactccggcttttt #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAG-CTCACCATGCCCTCTGCTCTGGATGCTg ttgtggataccctctgggtaccttcattcaacatttgaattttctttaagGTGGACCTGGTGGCCCAGGGTGACAGTATCTATGATATTATTGACCCTACTGACCATCTAACTGTGCGCCAGCAACCTCACCATGC-CTCCGCTCTTGATGCTggtaattgtatcgtgaacaaaggttccaacacataaggtactatgtgataa Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg ttgtggataccctctgggtaccttcattcaacatttgaattttctttaagGTGGACCTGGTGGCCCAGGGTGACAGTATCTATGATATTATTGACCCTACTGACCATCTAACTGTGCGCCAGCAACCTCACCATGCCTCCGCTCTTGATGCTggtaattgtatcgtgaacaaaggttccaacacataaggtactatgtgataa Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattcaacatttgaattttctttaagGTGGACCTGGTGGCCCAGGGTGACAGTATCTATGATATTATTGACCCTACTGACCATCTAACTGTGCGCCAGCAACCTCACCATGCCTCCGCTCTTGATGCTGgtaattgtatcgtgaacaaaggttccaacacataaggtactatgtgataa Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGC-TCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattcaacatttgaattttctttaagGTGGACCTGGTGGCCCAGGGTGACAGTATCTATGATATTATTGACCCTACTGACCATCTAACTGTGCGCCAGCAACCTCACCATG-CCTCCGCTCTTGATGCTGgtaattgtatcgtgaacaaaggttccaacacataaggtactatgtgataa Alignment from Pairagon GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAG-CTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattcaacatttgaattttctttaagGTGGACCTGGTGGCCCAGGGTGACAGTATCTATGATATTATTGACCCTACTGACCATCTAACTGTGCGCCAGCAACCTCACCATG-CCTCCGCTCTTGATGCTGgtaattgtatcgtgaacaaaggttccaacacataaggtactatgtgataa Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattcaacatttgaattttctttaagGTGGACCTGGTGGCCCAGGGTGACAGTATCTATGATATTATTGACCCTACTGACCATCTAACTGTGCGCCAGCAACCTCACCATGCCTCCGCTCTTGATGCTGgtaattgtatcgtgaacaaaggttccaacacataaggtactatgtgataa Alignment from Exonerate_coding2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattcaacatttgaattttctttaagGTGGACCTGGTGGCCCAGGGTGACAGTATCTATGATATTATTGACCCTACTGACCATCTAACTGTGCGCCAGCAACCTCACCATGCCTCCGCTCTTGATGCTGgtaattgtatcgtgaacaaaggttccaacacataaggtactatgtgataa Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattcaacatttgaattttctttaagGTGGACCTGGTGGCCCAGGGTGACAGTATCTATGATATTATTGACCCTACTGACCATCTAACTGTGCGCCAGCAACCTCACCATGCCTCCGCTCTTGATGCTGgtaattgtatcgtgaacaaaggttccaacacataaggtactatgtgataa #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGAC-ACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagggTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGG-GCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagggTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGA-CACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGG-GCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAG-CACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagtTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGTACCCAAGGAGCCATG-CTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagtTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGTACCCAAGGAGCCATGCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGTACCCAAGGAGCCATGCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGTACCCAAGGAGCCATGCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGTACCCAAGGAGCCATGCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGTACCCAAGGAGCCATGCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGTACCCAAGGAGCCATGCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaaccttaaaaacctaactgtggtccctccatctattgatttctggcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGACCTAGAAGTACCCAAGGAGCCATGCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatctacactctcatagcacaatgagtaaccctagtgtccaggt #### Nxf1_ID2344_4 --> 0 - 0 Original Alignment ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATG-ATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGCATTCAGA-CAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from CESAR ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGCATTCAGACAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Spaln_aa2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGCATTCAGACAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Spaln_nt2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGCATTCAGACAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Pairagon ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATG-ATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGCATTCAGA-CAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Exonerate_protein2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGCATTCAGACAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Exonerate_coding2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGCATTCAGACAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from GeneWise ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGCATTCAGACAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAG-GGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAACGGTGTAAACC-TAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAACGGTGTAAACCTAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAACGGTGTAAACCTAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAG-GGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAACGGTGTAAACC-TAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAG-GGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAACGGTGTAAACC-TAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAACGGTGTAAACCTAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAACGGTGTAAACCTAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAACGGTGTAAACCTAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAAC-CGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctaagacttcccactgtcctcgttttatctacagatTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCCGCAGGA-CTGCATGGCAGCCACCCTCCGCATCATCGAAGAGAACATTCCTGAGgtaccagttctttctttttttatttcaccattttaacttaattaactagt Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctaagacttcccactgtcctcgttttatctacagatTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCCGCAGGACTGCATGGCAGCCACCCTCCGCATCATCGAAGAGAACATTCCTGAGgtaccagttctttctttttttatttcaccattttaacttaattaactagt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctaagacttcccactgtcctcgttttatctacagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCCGCAGGACTGCATGGCAGCCACCCTCCGCATCATCGAAGAGAACATTCCTGAGgtaccagttctttctttttttatttcaccattttaacttaattaactagt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctaagacttcccactgtcctcgttttatctacagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCCGCAGGACTGCATGGCAGCCACCCTCCGCATCATCGAAGAGAACATTCCTGAGgtaccagttctttctttttttatttcaccattttaacttaattaactagt Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAA-CCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctaagacttcccactgtcctcgttttatctacagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCCGCAGGA-CTGCATGGCAGCCACCCTCCGCATCATCGAAGAGAACATTCCTGAGgtaccagttctttctttttttatttcaccattttaacttaattaactagt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctaagacttcccactgtcctcgttttatctacagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCCGCAGGACTGCATGGCAGCCACCCTCCGCATCATCGAAGAGAACATTCCTGAGgtaccagttctttctttttttatttcaccattttaacttaattaactagt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctaagacttcccactgtcctcgttttatctacagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCCGCAGGACTGCATGGCAGCCACCCTCCGCATCATCGAAGAGAACATTCCTGAGgtaccagttctttctttttttatttcaccattttaacttaattaactagt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctaagacttcccactgtcctcgttttatctacagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCCGCAGGACTGCATGGCAGCCACCCTCCGCATCATCGAAGAGAACATTCCTGAGgtaccagttctttctttttttatttcaccattttaacttaattaactagt #### Nxf1_ID2356_16 --> 2 - 0 Original Alignment ccCAGCGGTTCCGACTCTTA-AAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagccCAGCGGTTCCGACTCCTACAAGCATACAC-TCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from CESAR ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagccCAGCGGTTCCGACTCCTACAAGCATACACTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from Spaln_aa2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTACAAGCATACACTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from Spaln_nt2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTACAAGCATACACTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from Pairagon CCCAGCGGTTCCGACTCTTA-AAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTACAAGCATACAC-TCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from Exonerate_protein2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTACAAGCATACACTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACA---GTATTGTCCTGTTTTATCCTAACAGAAACCTAGAGGTGGGgtgaata Alignment from Exonerate_coding2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTACAAGCATACACTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from GeneWise CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTACAAGCATACACTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTGTGTTTTTCT-GTCAATGGAGTCTTCAAGGAAg gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCCTCA-TGAAGTCTTCAAGGAAcgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from CESAR AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAg gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCCTCATGAAGTCTTCAAGGAAcgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from Spaln_aa2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCCTCATGAAGTCTTCAAGGAACgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCCTCATGAAGTCTTCAAGGAACgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from Pairagon AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCCTCATGAAGTCTTCAAGGAACgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from Exonerate_protein2genome gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagagtacattactgtgtctatcccctcatgaagtcttcaaggaacgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from Exonerate_coding2genome gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagagtacattactgtgtctatcccctcatgaagtcttcaaggaacgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from GeneWise AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCCTCATGAAGTCTTCAAGGAACgtactaaattttagttctgaacctctgccattatcttagtgttccagcca #### Pacs1_ID878_16 --> 1 - 1 Original Alignment cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAG-ACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagcTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGCACCC-AGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAggtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from CESAR cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagcTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGCACCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAggtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Spaln_aa2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGCACCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Spaln_nt2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGCACCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Pairagon CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGCACCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Exonerate_protein2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGCACCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Exonerate_coding2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGCACCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from GeneWise CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGCACCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAA-AGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagatCGCTCCCCAGACATTGATAACTACTCTGAAGAAGAGGAAGAACAGCT-CTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from CESAR atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagatCGCTCCCCAGACATTGATAACTACTCTGAAGAAGAGGAAGAACAGCTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAAGAGGAAGAACAGCTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAAGAGGAAGAACAGCTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Pairagon ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAAGAGGAAGAACAGCTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAAGAGGAAGAACAGCTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Exonerate_coding2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAAGAGGAAGAACAGCTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAAGAGGAAGAACAGCTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCC-AAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtctccctccctttcccttctatttccttcttccctgtttctcccaaggACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTTCCCAATCCAA-CTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtctccctccctttcccttctatttccttcttccctgtttctcccaaggACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTTCCCAATCCAACTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTTCCCAATCCAACTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTTCCCAATCCAACTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Pairagon GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTTCCCAATCCAACTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTTCCCAATCCAACTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTTCCCAATCCAACTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTTCCCAATCCAACTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGtaagttttgaacacatttcattaccttctcagacattgcaacacaggac #### Pcnxl3_ID1161_32 --> 0 - 2 Original Alignment GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGA-TGGCTCTTGCGCAGCTGGGAGag atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGACCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGACTGGC-CTTGCGCAGCTGGGAGaggtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from CESAR GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGACCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGACTGGCCTTGCGCAGCTGGGAGaggtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Spaln_aa2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGACCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGACTGGCCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Spaln_nt2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGACCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGACTGGCCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Pairagon GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGACCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGACTGGCCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Exonerate_protein2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGACCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGACTGGCCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Exonerate_coding2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGACCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGACTGGCCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from GeneWise GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgttgctccttggtcttgctgccctggttttctacgtttttttccctagGTAAACCGGGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCGGGGCAGTGTCCAGAATGCCAAGCAGGCACTCTGCAACAAGATCAATTCCTCCTGTGACCAGCCACTAGGATATCCCATCTTTGTGTCACCACTGACCACATCTTTACCTGGTACCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGACTGGCCTTGCGCAGCTGGGAGAGgtaagtcctggctgtcccctaacttgggaagcttttgacaaagtcttgca #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAA-CCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCCAGCAGCTC-GTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGCGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCCAGCAGCTCGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGCGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCCAGCAGCTCGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGCGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCCAGCAGCTCGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGCGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from Pairagon GACCATTTCACATCTCCTGATGAGTATGAGGAA-CCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCCAGCAGCTC-GTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGCGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCCAGCAGCTCGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGCGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCCAGCAGCTCGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGCGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG tatgccttcccctgaacagtggtccctgttattgtattcttctcttctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCCAGCAGCTCGTATGACACCATCGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCTGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTGCTGGCGCTACGCCATGTCATGGATGACGCTTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaagtcagatggtcttaatccgtttggcagcccatgttgctccttggtc #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTAT-GGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gagggtgctctctttacatgacatccaccattcggttccttcttttacaggaGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATCGGTCCTGGAG-CTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGggtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gagggtgctctctttacatgacatccaccattcggttccttcttttacaggaGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATCGGTCCTGGAGCTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGggtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATCGGTCCTGGAGCTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATCGGTCCTGGAGCTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTAT-GGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATCGGTCCTGGAG-CTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATCGGTCCTGGAGCTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATCGGTCCTGGAGCTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATCGGTCCTGGAGCTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGC-ACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCCACTGTCT-CATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCCACTGTCTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCCACTGTCTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCCACTGTCTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAG-CACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCCACTGTC-TCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCCACTGTCTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCCACTGTCTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgttttccacccaacctcttcttagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCCACTGTCTCATTGCCTTGAAGgtgagattggaataggtaaacctcttggcatagatcagcacactgctatg #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC tccatggaccctagtattcgttgccaacatgcagtgttattttgacacagAGTGTGCAACCTCGATGCAG-ATCCCCCATGCACgtaagtacttgaggggtgatactctggccagtgggcactgggaaggtcta Alignment from CESAR AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggaccctagtattcgttgccaacatgcagtgttattttgacacagAGTGTGCAACCTCGATGCAGATCCCCCATGCACgtaagtacttgaggggtgatactctggccagtgggcactgggaaggtcta Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggaccctagtattcgttgccaacatgcagtgttattttgacacagAGTGTGCAACCTCGATGCAGATCCCCCATGCACgtaagtacttgaggggtgatactctggccagtgggcactgggaaggtcta Alignment from Spaln_nt2Genome AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC tccatggaccctagtattcgttgccaacatgcagtgttattttgacacagAGTGTGCAACCTCGATGCAG-ATCCCCCATGCACgtaagtacttgaggggtgatactctggccagtgggcactgggaaggtcta Alignment from Pairagon AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC tccatggaccctagtattcgttgccaacatgcagtgttattttgacacagAGTGTGCAACCTCGATGCAG-ATCCCCCATGCACgtaagtacttgaggggtgatactctggccagtgggcactgggaaggtcta Alignment from Exonerate_protein2genome tccatggaccctagtattcgttgccaacatgcagtgttattttgacacagagtgtgcaacctcgatgcagatcccccatgcacgtaagtacttgaggggtgatactctggccagtgggcactgggaaggtcta Alignment from Exonerate_coding2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggaccctagtattcgttgccaacatgcagtgttattttgacacagAGTGTGCAACCTCGATGCAGATCCCCCATGCACgtaagtacttgaggggtgatactctggccagtgggcactgggaaggtcta Alignment from GeneWise tccatggaccctagtattcgttgccaacatgcagtgttattttgacacagagtgtgcaacctcgatgcagatcccccatgcacgtaagtacttgaggggtgatactctggccagtgggcactgggaaggtcta #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGA-GCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGACGCGCAAG-TATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from CESAR caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGACGCGCAAGTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGACGCGCAAGTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGACGCGCAAGTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Pairagon CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGA-GCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGACGCGCAAG-TATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGACGCGCAAGTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGACGCGCAAGTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGACGCGCAAGTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGCAGCAAC-AACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa tggatgaggccctgggttccacctacaggacctttttacttcaatgacagacATCAAAGAGCTGGTACGGGAACAGGGTAGCAACCAATGTAATTG-TACCTCTGCTGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGagtaactgggcaaaactggcaagcagatgtcttgtgataacaatcatcccc Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa tggatgaggccctgggttccacctacaggacctttttacttcaatgacagacATCAAAGAGCTGGTACGGGAACAGGGTAGCAACCAATGTAATTGTACCTCTGCTGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGagtaactgggcaaaactggcaagcagatgtcttgtgataacaatcatcccc Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tggatgaggccctgggttccacctacaggacctttttacttcaatgacagACATCAAAGAGCTGGTACGGGAACAGGGTAGCAACCAATGTAATTGTACCTCTGCTGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaagcagatgtcttgtgataacaatcatcccc Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tggatgaggccctgggttccacctacaggacctttttacttcaatgacagACATCAAAGAGCTGGTACGGGAACAGGGTAGCAACCAATGTAATTGTACCTCTGCTGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaagcagatgtcttgtgataacaatcatcccc Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAA-CAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tggatgaggccctgggttccacctacaggacctttttacttcaatgacagACATCAAAGAGCTGGTACGGGAACAGGGTAGCAACCAATGTAATTGT-ACCTCTGCTGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaagcagatgtcttgtgataacaatcatcccc Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tggatgaggccctgggttccacctacaggacctttttacttcaatgacagACATCAAAGAGCTGGTACGGGAACAGGGTAGCAACCAATGTAATTGTACCTCTGCTGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaagcagatgtcttgtgataacaatcatcccc Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tggatgaggccctgggttccacctacaggacctttttacttcaatgacagACATCAAAGAGCTGGTACGGGAACAGGGTAGCAACCAATGTAATTGTACCTCTGCTGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaagcagatgtcttgtgataacaatcatcccc Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA tggatgaggccctgggttccacctacaggacctttttacttcaatgacagACATCAAAGAGCTGGTACGGGAACAGGGTAGCAACCAATGTAATTGTACCTCTGCTGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaagcagatgtcttgtgataacaatcatcccc #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCCCGGATGGAG-GATTCTGGGCCCCTCAGAg tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGGAGCGATT-TGGGCCTCTCAGAggtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from CESAR GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAg tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGGAGCGATTTGGGCCTCTCAGAggtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from Spaln_aa2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGGAGCGATTTGGGCCTCTCAGAGgtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from Spaln_nt2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGGAGCGATTTGGGCCTCTCAGAGgtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from Pairagon GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGGAGCGATTTGGGCCTCTCAGAGgtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from Exonerate_protein2genome tactcactccccctgcttgtttatttgttcagcttcatttttctttgcaggagttgctgtcccggatggagcgatttgggcctctcagaggtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from Exonerate_coding2genome tactcactccccctgcttgtttatttgttcagcttcatttttctttgcaggagttgctgtcccggatggagcgatttgggcctctcagaggtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from GeneWise GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGGAGCGATTTGGGCCTCTCAGAGgtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTGTTCCGG-AAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccaggGATCCCGGTGTAGAGATGACAGTGTTCCAGCAAGGTTA-CTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccaggGATCCCGGTGTAGAGATGACAGTGTTCCAGCAAGGTTACTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGCAAGGTTACTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGCAAGGTTACTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTGTTCCGG-AAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGCAAGGTTA-CTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGCAAGGTTACTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from Exonerate_coding2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGCAAGGTTACTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from GeneWise GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGCAAGGTTACTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGC-CTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcaggtGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCCTGGCAC-TGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcaggtGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCCTGGCACTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCCTGGCACTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCCTGGCACTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCCTGGCACTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCCTGGCACTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCCTGGCACTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCCTGGCACTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGAT-GCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACCGCAGTGC-TCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAggtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACCGCAGTGCTCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAggtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACCGCAGTGCTCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACCGCAGTGCTCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Pairagon GAAAATGGTGTAGA-TGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACCGCAGTGC-TCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACCGCAGTGCTCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACCGCAGTGCTCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACCGCAGTGCTCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg #### Pcx_ID555_5 --> 2 - 0 Original Alignment gcGTTCCAGTGGTCCCCGGCACGGACTCCCCC-ATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctataggtGTTCCAGTGGTCCCTGGAACAGACTCCCCCCATCA-CTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from CESAR gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctataggtGTTCCAGTGGTCCCTGGAACAGACTCCCCCCATCACTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from Spaln_aa2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGTGTTCCAGTGGTCCCTGGAACAGACTCCCCCCATCACTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from Spaln_nt2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGTGTTCCAGTGGTCCCTGGAACAGACTCCCCCCATCACTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from Pairagon GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGTGTTCCAGTGGTCCCTGGAACAGACTCCCCCCATCACTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from Exonerate_protein2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGTGTTCCAGTGGTCCCTGGAACAGACTCCCCCCATCACTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from Exonerate_coding2genome GCAGGCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGT----GTTCCAGTGGTCCCTGGAACAGACTCCCCCCATCACTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca Alignment from GeneWise GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggcagggagagacagtctgggtattctgtgaccatatcccacctctatagGTGTTCCAGTGGTCCCTGGAACAGACTCCCCCCATCACTCCTTACATGAGGCACATGAGTTTTCCAACACCTATGGTTCCCCTATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTACGAAgtacaaggggcagcacatataccaaagtccctgtgataggctggcagcca #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTT-GGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTCGGGAATC-AGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAggtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTCGGGAATCAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAggtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTCGGGAATCAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTCGGGAATCAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTCGGGAATCAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTCGGGAATCAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTCGGGAATCAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTCGGGAATCAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTC-CGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCCGAGTCTTTG-CTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctgttctgtct Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCCGAGTCTTTGCTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattcacccacagtt Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCCGAGTCTTTGCTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctgttctgtct Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCCGAGTCTTTGCTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctgttctgtct Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTT-CCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCCGAGTCTTTG-CTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctgttctgtct Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCCGAGTCTTTGCTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctgttctgtct Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCCGAGTCTTTGCTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctgttctgtct Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatttctcctttgtccttcctttgacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCCGAGTCTTTGCTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGGAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCCGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTATGCATTAAGgtgggtgggccacacagcaggtccctcttgaccataattctgttctgtct #### Pcx_ID569_18 --> 0 - 0 Original Alignment GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTC-TCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG ggacaggggcttgcaccaagaaccttctatgattccccttttccacccagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCACGGGGAAGAGGTGACACAAGAGGATGTCCTCCTCTGCAG-CATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaagtggttcctgtgtttgtttccattcatccccagggcctctagtaat Alignment from CESAR GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG ggacaggggcttgcaccaagaaccttctatgattccccttttccacccagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCACGGGGAAGAGGTGACACAAGAGGATGTCCTCCTCTGCAGCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaagtggttcctgtgtttgtttccattcatccccagggcctctagtaat Alignment from Spaln_aa2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG ggacaggggcttgcaccaagaaccttctatgattccccttttccacccagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCACGGGGAAGAGGTGACACAAGAGGATGTCCTCCTCTGCAGCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaagtggttcctgtgtttgtttccattcatccccagggcctctagtaat Alignment from Spaln_nt2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG ggacaggggcttgcaccaagaaccttctatgattccccttttccacccagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCACGGGGAAGAGGTGACACAAGAGGATGTCCTCCTCTGCAGCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaagtggttcctgtgtttgtttccattcatccccagggcctctagtaat Alignment from Pairagon GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCT-CTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG ggacaggggcttgcaccaagaaccttctatgattccccttttccacccagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCACGGGGAAGAGGTGACACAAGAGGATGTCCTCCTCTGCAG-CATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaagtggttcctgtgtttgtttccattcatccccagggcctctagtaat Alignment from Exonerate_protein2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG ggacaggggcttgcaccaagaaccttctatgattccccttttccacccagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCACGGGGAAGAGGTGACACAAGAGGATGTCCTCCTCTGCAGCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaagtggttcctgtgtttgtttccattcatccccagggcctctagtaat Alignment from Exonerate_coding2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG ggacaggggcttgcaccaagaaccttctatgattccccttttccacccagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCACGGGGAAGAGGTGACACAAGAGGATGTCCTCCTCTGCAGCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaagtggttcctgtgtttgtttccattcatccccagggcctctagtaat Alignment from GeneWise GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAG ggacaggggcttgcaccaagaaccttctatgattccccttttccacccagGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGGCACGGGGAAGAGGTGACACAAGAGGATGTCCTCCTCTGCAGCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACCTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCAAAATTGCAGAGGAGTTTGAGgtaagtggttcctgtgtttgtttccattcatccccagggcctctagtaat #### Pdcd11_ID10129_23 --> 0 - 1 Original Alignment GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCT-TTCTTATGTCTGTCACTCATAg ttttatttttggataaatgacagaacaaattttttttatgtttttctaagGTTCTGAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTCTTCT-GTGTCTGTCACTCATAggtaagtaatgatttggtgcctggtcagagagagactggggtgggaggctt Alignment from CESAR GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg ttttatttttggataaatgacagaacaaattttttttatgtttttctaagGTTCTGAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTCTTCTGTGTCTGTCACTCATAggtaagtaatgatttggtgcctggtcagagagagactggggtgggaggctt Alignment from Spaln_aa2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ttttatttttggataaatgacagaacaaattttttttatgtttttctaagGTTCTGAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTCTTCTGTGTCTGTCACTCATAGgtaagtaatgatttggtgcctggtcagagagagactggggtgggaggctt Alignment from Spaln_nt2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ttttatttttggataaatgacagaacaaattttttttatgtttttctaagGTTCTGAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTCTTCTGTGTCTGTCACTCATAGgtaagtaatgatttggtgcctggtcagagagagactggggtgggaggctt Alignment from Pairagon GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ttttatttttggataaatgacagaacaaattttttttatgtttttctaagGTTCTGAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTCTTCTGTGTCTGTCACTCATAGgtaagtaatgatttggtgcctggtcagagagagactggggtgggaggctt Alignment from Exonerate_protein2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ttttatttttggataaatgacagaacaaattttttttatgtttttctaagGTTCTGAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTCTTCTGTGTCTGTCACTCATAGgtaagtaatgatttggtgcctggtcagagagagactggggtgggaggctt Alignment from Exonerate_coding2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ttttatttttggataaatgacagaacaaattttttttatgtttttctaagGTTCTGAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTCTTCTGTGTCTGTCACTCATAGgtaagtaatgatttggtgcctggtcagagagagactggggtgggaggctt Alignment from GeneWise GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ttttatttttggataaatgacagaacaaattttttttatgtttttctaagGTTCTGAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTCTTCTGTGTCTGTCACTCATAGgtaagtaatgatttggtgcctggtcagagagagactggggtgggaggctt #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACT-GGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagcGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTCGGGAGGCCAG-TGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagcGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTCGGGAGGCCAGTGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTCGGGAGGCCAGTGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTCGGGAGGCCAGTGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACT-GGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTCGGGAGGCCAG-TGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTCGGGAGGCCAGTGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTCGGGAGGCCAGTGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAGGAACTAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTCGGGAGGCCAGTGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAG---GCAAgtacccctccctgggcagcattgcctcatctcacccatcagtg #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACA-GACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag tgtggtgagatctctgggttgtcttggccactgcctcatccccttctcagatGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGCGATGTCTGGT-AGTCTACATCGACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtaaagtcaacaacagggctcattgctgatagagtgtggggtgggaagag Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACA-GACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag tgtggtgagatctctgggttgtcttggccactgcctcatccccttctcagatGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGCGATGTCTGG-TAGTCTACATCGACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtaaagtcaacaacagggctcattgctgatagagtgtggggtgggaagag Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tgtggtgagatctctgggttgtcttggccactgcctcatccccttctcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGCGATGTCTGGTAGTCTACATCGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaaagtcaacaacagggctcattgctgatagagtgtggggtgggaagag Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tgtggtgagatctctgggttgtcttggccactgcctcatccccttctcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGCGATGTCTGGTAGTCTACATCGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaaagtcaacaacagggctcattgctgatagagtgtggggtgggaagag Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACA-GACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tgtggtgagatctctgggttgtcttggccactgcctcatccccttctcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGCGATGTCTGGT-AGTCTACATCGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaaagtcaacaacagggctcattgctgatagagtgtggggtgggaagag Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tgtggtgagatctctgggttgtcttggccactgcctcatccccttctcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGCGATGTCTGGTAGTCTACATCGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaaagtcaacaacagggctcattgctgatagagtgtggggtgggaagag Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tgtggtgagatctctgggttgtcttggccactgcctcatccccttctcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGCGATGTCTGGTAGTCTACATCGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaaagtcaacaacagggctcattgctgatagagtgtggggtgggaagag Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tgtggtgagatctctgggttgtcttggccactgcctcatccccttctcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGCGATGTCTGGTAGTCTACATCGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaaagtcaacaacagggctcattgctgatagagtgtggggtgggaagag #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTAC-AGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACCAGTGTGG-GTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACCAGTGTGGGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACCAGTGTGGGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACCAGTGTGGGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTA-CAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACCAGTGTGG-GTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACCAGTGTGGGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACCAGTGTGGGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACCAGTGTGGGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAA-ATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAACATTACTG-TTACATTTTACATGGCAAAGAAGAAATCAATGTGATTccgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAACATTACTGTTACATTTTACATGGCAAAGAAGAAATCAATGTGATTccgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAACATTACTGTTACATTTTACATGGCAAAGAAGAAATCAATGTGATTCCgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAACATTACTGTTACATTTTACATGGCAAAGAAGAAATCAATGTGATTCCgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAACATTACTGTTACATTTTACATGGCAAAGAAGAAATCAATGTGATTCCgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAACATTACTGTTACATTTTACATGGCAAAGAAGAAATCAATGTGATTCCgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAACATTACTGTTACATTTTACATGGCAAAGAAGAAATCAATGTGATTCCgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCCGTCA-- ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAACATTACTGTTACATTTTACATGGCAAAGAAGAAATCAATGTGATTCCGCAAGTgttccctggaagcagccacatgagttgcctctgggactttgact #### Pde6c_ID7550_20 --> 0 - 0 Original Alignment CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTT-ATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTCATTG-TTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from CESAR CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTCATTGTTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from Spaln_aa2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTCATTGTTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from Spaln_nt2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTCATTGTTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from Pairagon CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTCATTGTTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from Exonerate_protein2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTCATTGTTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from Exonerate_coding2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTCATTGTTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from GeneWise CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTCATTGTTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt #### Peo1_ID9266_3 --> 1 - 2 Original Alignment gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATG-GGTCACGAGCAGCTCTCCTCTGACag tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGCGGTC-TGAGCAGCTCTCCTCTGACaggtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from CESAR gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGCGGTCTGAGCAGCTCTCCTCTGACaggtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Spaln_aa2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGCGGTCTGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Spaln_nt2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGCGGTCTGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Pairagon GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGCGGTCTGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Exonerate_protein2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGCGGTCTGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Exonerate_coding2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGCGGTCTGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from GeneWise GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGCGGTCTGAGCAGCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt #### Pga5_ID2974_4 --> 2 - 0 Original Alignment ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTAT-GGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagctCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATCGGCTCAG-AGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from CESAR ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagctCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATCGGCTCAGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Spaln_aa2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATCGGCTCAGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Spaln_nt2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATCGGCTCAGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Pairagon CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTAT-GGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATCGGCTCA-GAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Exonerate_protein2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATCGGCTCAGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Exonerate_coding2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATCGGCTCAGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from GeneWise CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATCGGCTCAGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGC-AGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGGCCAGCAGCC-CCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGGCCAGCAGCCCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGGCCAGCAGCCCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGGCCAGCAGCCCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGG-CAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGGCCAGCAGCC-CCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGGCCAGCAGCCCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from Exonerate_coding2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGGCCAGCAGCCCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG taaacaggtaaaaaagccactctgttgtcttccatgtctctctcacacagGTGGTCTTGATCGGAGATGGTGTTGGTGGCATCCTCGGCTTTGATGCACTCTGCCACAGTGCCAGTGCAGGCCCAGGAAGCCGGGGCCAGCAGCCCCGTGGGAGCATGgtataggtgtccaaactaacctcctcaggagggcaggtatctccacctct #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTC-ACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACAC-GCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCAC-CGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCCGAGCGAGTG-CACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGAC---ACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCAC---CCGAGCGAGTGCACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCCGAGCGAGTGCACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCCGAGCGAGTGCACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from Pairagon AACGTCACTTCCAACCA-CCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCCGAGCGAGTG-CACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCCGAGCGAGTGCACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCCGAGCGAGTGCACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCCGAGCGAGTGCACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTC-TTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacaggGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCCTTCAGCA-CGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGaggtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacaggGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCCTTCAGCACGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGaggtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCCTTCAGCACGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCCTTCAGCACGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGT-CTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCCTTCAGCA-CGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from Exonerate_protein2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCCTTCAGCACGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from Exonerate_coding2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCCTTCAGCACGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactgccaacctcaccctgtccacctatgatgtctccctctgcccacagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTCGTGTCCCGAGGCACAGAAGCTGTGGTCCTTCAGCACGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGTGACCCCAAGGTGCGAGCTGGTGCAGTAGATGTGGTGAGgtatggtcctcagacccacatagcaacttgtcatccctgtggactggagc #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTG-GCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttaggCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCGGATATGCAAAAGCACCGTGTAGTGCGCCTGGCTGT-ACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttaggCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCGGATATGCAAAAGCACCGTGTAGTGCGCCTGGCTGTACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCGGATATGCAAAAGCACCGTGTAGTGCGCCTGGCTGTACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCGGATATGCAAAAGCACCGTGTAGTGCGCCTGGCTGTACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTG-GCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCGGATATGCAAAAGCACCGTGTAGTGCGCCTGGCTGT-ACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from Exonerate_protein2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCGGATATGCAAAAGCACCGTGTAGTGCGCCTGGCTGTACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from Exonerate_coding2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCGGATATGCAAAAGCACCGTGTAGTGCGCCTGGCTGTACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac Alignment from GeneWise -CACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatctgtgtggactggagacagtatgattaatttgtttagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCGGATATGCAAAAGCACCGTGTAGTGCGCCTGGCTGTACAACACACCTTCCCCCATGGTGTTGACTCTTTCTGTGATGGCCTCATGCATGACCCATTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtaccctggcttgggatggacctatcctgcttgaccacattccacaccac #### Pkd2l1_ID8955_13 --> 0 - 2 Original Alignment GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAA-AGCTGGGTTTCTGGAGAAGAATTCGACat tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGGAGGCTGCAAGGGGACAACAGCTGGGTTT-TGGAGAAGAATTTGACatgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from CESAR GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGGAGGCTGCAAGGGGACAACAGCTGGGTTTTGGAGAAGAATTTGACatgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from Spaln_aa2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGGAGGCTGCAAGGGGACAACAGCTGGGTTTTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from Spaln_nt2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGGAGGCTGCAAGGGGACAACAGCTGGGTTTTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from Pairagon GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAA-AGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGGAGGCTGCAAGGGGACAACAGCTGGGTTT-TGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from Exonerate_protein2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGGAGGCTGCAAGGGGACAACAGCTGGGTTTTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from Exonerate_coding2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGGAGGCTGCAAGGGGACAACAGCTGGGTTTTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from GeneWise GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGGAGGCTGCAAGGGGACAACAGCTGGGTTTTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment gGAACTGACAGAGATTAATCGGCGGCACATCACT-GAGTCGGTAAACTCCATCAGACGG gtgagtgggtgcagggacagagcttagcaactacactgtttgctttacaggGAACTGACAGAGATTAATCGGCAACACATCACTCGAATCGGTAA-CTCCAACAGACGGgtgagcgggctccacctctctttcaccagcaggagctcagctttaccgtg Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtgagtgggtgcagggacagagcttagcaactacactgtttgctttacaggGAACTGACAGAGATTAATCGGCAACACATCACTCGAATCGGTAACTCCAACAGACGGgtgagcgggctccacctctctttcaccagcaggagctcagctttaccgtg Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtgagtgggtgcagggacagagcttagcaactacactgtttgctttacagGGAACTGACAGAGATTAATCGGCAACACATCACTCGAATCGGTAACTCCAACAGACGGgtgagcgggctccacctctctttcaccagcaggagctcagctttaccgtg Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACT-GAGTCGGTAAACTCCATCAGACGG gtgagtgggtgcagggacagagcttagcaactacactgtttgctttacagGGAACTGACAGAGATTAATCGGCAACACATCACTCGAATCGGT-AACTCCAACAGACGGgtgagcgggctccacctctctttcaccagcaggagctcagctttaccgtg Alignment from Pairagon GGAACTGACAGAGATTAATCGGCGGCACATCACT-GAGTCGGTAAACTCCATCAGACGG gtgagtgggtgcagggacagagcttagcaactacactgtttgctttacagGGAACTGACAGAGATTAATCGGCAACACATCACTCGAATCGGT-AACTCCAACAGACGGgtgagcgggctccacctctctttcaccagcaggagctcagctttaccgtg Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtgagtgggtgcagggacagagcttagcaactacactgtttgctttacagGGAACTGACAGAGATTAATCGGCAACACATCACTCGAATCGGTAACTCCAACAGACGGgtgagcgggctccacctctctttcaccagcaggagctcagctttaccgtg Alignment from Exonerate_coding2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtgagtgggtgcagggacagagcttagcaactacactgtttgctttacagGGAACTGACAGAGATTAATCGGCAACACATCACTCGAATCGGTAACTCCAACAGACGGgtgagcgggctccacctctctttcaccagcaggagctcagctttaccgtg Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtgagtgggtgcagggacagagcttagcaactacactgtttgctttacagGGAACTGACAGAGATTAATCGGCAACACATCACTCGAATCGGTAACTCCAACAGACGGgtgagcgggctccacctctctttcaccagcaggagctcagctttaccgtg #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAAC-AACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAG---------------gt gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaataggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCT-AGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTGTATGGCCACTGGgtgtaatcccaccgagtgagtgggtgcagggacagagcttagcctccttgtt Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaataggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAgtgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagcaactacact Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagcctccttgtt Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagcctccttgtt Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAA-CAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCT-AGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagcctccttgtt Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagcctccttgtt Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagcctccttgtt Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACCAACAGCATCTAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagcctccttgtt #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAAC-CGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCCAAA-AGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCCAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCCAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCCAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCCAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCCAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCCAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCCAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACG-CTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACCTGGCCTCAC-TCGCATTGCAGCCTTTGAGAAAGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCACTCAggtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACCTGGCCTCACTCGCATTGCAGCCTTTGAGAAAGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCACTCAggtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACCTGGCCTCACTCGCATTGCAGCCTTTGAGAAAGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCACTCAGgtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGC-TGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACCTGGCCTCAC-TCGCATTGCAGCCTTTGAGAAAGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCACTCAGgtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from Pairagon GTTGTGCTGCCCACG-CTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACCTGGCCTCAC-TCGCATTGCAGCCTTTGAGAAAGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCACTCAGgtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACCTGGCCTCACTCGCATTGCAGCCTTTGAGAAAGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCACTCAGgtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACCTGGCCTCACTCGCATTGCAGCCTTTGAGAAAGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCACTCAGgtaagtccgggggctccggcactagagcagcttggaagtttcagcagaga Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGC------------------------------------------------------ ccagcttggtggctatggtgtcccatggagtatgacctacttcatttcagGTTGTACTGCCCACACCTGGCCTCACTCGCATTGCAGCCTTTGAGAAAGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCACTCAGGTAAGTCCGGGGGCTCCGGCACTAGAGCAGCTTGGAAGTTTCAGCAGAGA #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTCGAG-ATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagaaAGGAACAAGTGCTTTAGGCATGT-ATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGgagtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from CESAR aaAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagaaAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGgagtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Pairagon AAAGGAACAAGTGCTTCGAG-ATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGCATGT-ATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Exonerate_coding2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from GeneWise AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg #### Plcb3_ID1918_13 --> 0 - 1 Original Alignment CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTG-CGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATG---GGTATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACCGCA-GCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCggcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from CESAR CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACCGCAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCggcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Spaln_aa2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACCGCAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Spaln_nt2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGG---GTATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACCGCAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Pairagon CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGG---GTATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACCGCAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Exonerate_protein2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACCGCAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Exonerate_coding2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACCGCAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from GeneWise CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTGGGTCC- aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACCGCAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGGCAAGTgtcctgtcctgacttctacccctgaacctaatgatatattcacc #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATT-GACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagaGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCATTCGACCCTC-TGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagaGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCATTCGACCCTCTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCATTCGACCCTCTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATT-GACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCA---CAAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCATTCGACCCTCT-GACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATT-GACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCA---CAAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCATTCGACCCTCT-GACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCATTCGACCCTCTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCATTCGACCCTCTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCATTCGACCCTCTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTC-ATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg catgtcttggggtgaccactaggggagcaattactttcttttcttcctagaGGCGCGAAGGGCAAGCCATACCTTACTCTGGAGCAGCTCCATGGACTTTG-CAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCACCACTTCGGTCCTCACAAGCCCGGCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTggtgagttgctataggcagcatggcagtgtgggtggggcccacctagccca Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg catgtcttggggtgaccactaggggagcaattactttcttttcttcctagaGGCGCGAAGGGCAAGCCATACCTTACTCTGGAGCAGCTCCATGGACTTTGCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCACCACTTCGGTCCTCACAAGCCCGGCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTggtgagttgctataggcagcatggcagtgtgggtggggcccacctagccca Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catgtcttggggtgaccactaggggagcaattactttcttttcttcctagAGGCGCGAAGGGCAAGCCATACCTTACTCTGGAGCAGCTCCATGGACTTTGCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCACCACTTCGGTCCTCACAAGCCCGGCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtgagttgctataggcagcatggcagtgtgggtggggcccacctagccca Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catgtcttggggtgaccactaggggagcaattactttcttttcttcctagAGGCGCGAAGGGCAAGCCATACCTTACTCTGGAGCAGCTCCATGGACTTTGCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCACCACTTCGGTCCTCACAAGCCCGGCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtgagttgctataggcagcatggcagtgtgggtggggcccacctagccca Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCT-CATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catgtcttggggtgaccactaggggagcaattactttcttttcttcctagAGGCGCGAAGGGCAAGCCATACCTTACTCTGGAGCAGCTCCATGGACTTTG-CAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCACCACTTCGGTCCTCACAAGCCCGGCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtgagttgctataggcagcatggcagtgtgggtggggcccacctagccca Alignment from Exonerate_protein2genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catgtcttggggtgaccactaggggagcaattactttcttttcttcctagAGGCGCGAAGGGCAAGCCATACCTTACTCTGGAGCAGCTCCATGGACTTTGCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCACCACTTCGGTCCTCACAAGCCCGGCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtgagttgctataggcagcatggcagtgtgggtggggcccacctagccca Alignment from Exonerate_coding2genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catgtcttggggtgaccactaggggagcaattactttcttttcttcctagAGGCGCGAAGGGCAAGCCATACCTTACTCTGGAGCAGCTCCATGGACTTTGCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCACCACTTCGGTCCTCACAAGCCCGGCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtgagttgctataggcagcatggcagtgtgggtggggcccacctagccca Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catgtcttggggtgaccactaggggagcaattactttcttttcttcctagAGGCGCGAAGGGCAAGCCATACCTTACTCTGGAGCAGCTCCATGGACTTTGCAACCAGAAGCAGAGAGACCCAAGACTCAATGAAGTGCTGTACCCACCACTTCGGTCCTCACAAGCCCGGCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtgagttgctataggcagcatggcagtgtgggtggggcccacctagccca #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAG-ACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagcATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGCACTG-GCTGGAGTCCTGTGGCCTCAACTTAAACCGAgtgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagcATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGCACTGGCTGGAGTCCTGTGGCCTCAACTTAAACCGAgtgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGCACTGGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGCACTGGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGCACTGGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGCACTGGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Exonerate_coding2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGCACTGGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGCACTGGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata #### Plcb3_ID1925_6 --> 1 - 2 Original Alignment aTACACGAAGCTGAAGCTGCAGGTG-AACCAGGATGGACGGATTCCGGTCAAGaa gagtgctgggagttccactgacaagacctatccttttttttcttttctagaTACACGAAGCTGAAGCTGCAGGTGCAATC-GGATGGACGGATTCCAGTCAAGaagtgaggtcccattccctcgcagcatcttctctcctgccctgagattggtg Alignment from CESAR aTACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGaa gagtgctgggagttccactgacaagacctatccttttttttcttttctagaTACACGAAGCTGAAGCTGCAGGTGCAATCGGATGGACGGATTCCAGTCAAGaagtgaggtcccattccctcgcagcatcttctctcctgccctgagattggtg Alignment from Spaln_aa2Genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA gagtgctgggagttccactgacaagacctatccttttttttcttttctagATACACGAAGCTGAAGCTGCAGGTGCAATCGGATGGACGGATTCCAGTCAAGAAgtgaggtcccattccctcgcagcatcttctctcctgccctgagattggtg Alignment from Spaln_nt2Genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA gagtgctgggagttccactgacaagacctatccttttttttcttttctagATACACGAAGCTGAAGCTGCAGGTGCAATCGGATGGACGGATTCCAGTCAAGAAgtgaggtcccattccctcgcagcatcttctctcctgccctgagattggtg Alignment from Pairagon ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA gagtgctgggagttccactgacaagacctatccttttttttcttttctagATACACGAAGCTGAAGCTGCAGGTGCAATCGGATGGACGGATTCCAGTCAAGAAgtgaggtcccattccctcgcagcatcttctctcctgccctgagattggtg Alignment from Exonerate_protein2genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA gagtgctgggagttccactgacaagacctatccttttttttcttttctagATACACGAAGCTGAAGCTGCAGGTGCAATCGGATGGACGGATTCCAGTCAAGAAgtgaggtcccattccctcgcagcatcttctctcctgccctgagattggtg Alignment from Exonerate_coding2genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA gagtgctgggagttccactgacaagacctatccttttttttcttttctagATACACGAAGCTGAAGCTGCAGGTGCAATCGGATGGACGGATTCCAGTCAAGAAgtgaggtcccattccctcgcagcatcttctctcctgccctgagattggtg Alignment from GeneWise ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA gagtgctgggagttccactgacaagacctatccttttttttcttttctagATACACGAAGCTGAAGCTGCAGGTGCAATCGGATGGACGGATTCCAGTCAAGAAgtgaggtcccattccctcgcagcatcttctctcctgccctgagattggtg #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACT-GTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa cccagaagcttttccctcccagataacactttctgaaaatttatttttaggtTGGCGGTACCAGGTAACTCGTCACCC-CTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCaagtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa cccagaagcttttccctcccagataacactttctgaaaatttatttttaggtTGGCGGTACCAGGTAACTCGTCACCCCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCaagtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTCGTCACCCCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTCGTCACCCCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from Pairagon GTTGGCGGTACCAGGTGACT-GTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTCGTCACCCC-TCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTCGTCACCCCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTCGTCACCCCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cccagaagcttttccctcccagataacactttctgaaaatttatttttagGTTGGCGGTACCAGGTAACTCGTCACCCCTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaagtaaagattgaaagcatcacacagttcttcttatatctaagtgggt #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGG-GCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagggAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGCGCAGGGA-AGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagggAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGCGCAGGGAAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGCGCAGGGAAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGCGCAGGGAAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGG-GCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGCGCAGGGA-AGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGCGCAGGGAAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGCGCAGGGAAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGCGCAGGGAAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt #### Pold4_ID437_2 --> 2 - 1 Original Alignment ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAG-TTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagggGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGCTTTG-CTTGGCCTGGCAGTATGGGCCTTGTACAggtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from CESAR ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagggGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGCTTTGCTTGGCCTGGCAGTATGGGCCTTGTACAggtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Spaln_aa2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGCTTTGCTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Spaln_nt2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGCTTTGCTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Pairagon GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGCTTTGCTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Exonerate_protein2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGCTTTGCTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Exonerate_coding2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGCTTTGCTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from GeneWise GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGCTTTGCTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTG-AAGGCACACCCTGAAGACCCTCACTTCCAATGCag atgccactatgacccccctgcctatctcacctttccctctactctcttaggtATCACAAGACTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGCAAGG-ACACCCTGAAGACCCTCACTTCCAATGCaggtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from CESAR gtATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag atgccactatgacccccctgcctatctcacctttccctctactctcttaggtATCACAAGACTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGCAAGGACACCCTGAAGACCCTCACTTCCAATGCaggtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from Spaln_aa2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGCAAGGACACCCTGAAGACCCTCACTTCCAATGCAGgtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGCAAGGACACCCTGAAGACCCTCACTTCCAATGCAGgtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from Pairagon GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGCAAGGACACCCTGAAGACCCTCACTTCCAATGCAGgtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGCAAGGACACCCTGAAGACCCTCACTTCCAATGCAGgtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGCAAGGACACCCTGAAGACCCTCACTTCCAATGCaggtaagtatagacccagacagcttcgggggacccagggacgtctccgggag Alignment from GeneWise GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC atgccactatgacccccctgcctatctcacctttccctctactctcttagGTATCACAAGACTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGCAAGGACACCCTGAAGACCCTCACTTCCAATGCaggtaagtatagacccagacagcttcgggggacccagggacgtctccgggag #### Poll_ID9484_3 --> 1 - 0 Original Alignment gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCT-GTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctaggTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTC-TCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from CESAR gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctaggTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Spaln_aa2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Spaln_nt2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCT-GTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCT-CTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Pairagon GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGC-TGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCT-CTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Exonerate_protein2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Exonerate_coding2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from GeneWise GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta #### Ppp1ca_ID412_6 --> 0 - 0 Original Alignment GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGAC-AATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG gggggtggcatgcctaacttaaagagtaccttctcccttcttctctctagGTTGTAGAAGATGGCTATGAGTTCTTTGCAAAGAGGCAGCTGGTGACACTCTTCTCGGCTCCCAACTACTGTGGAGAGTTTGACCAATG-TGGTGCCATGATGAGCGTGGACAAGACCCTCATGTGTTCCAGAGCCTTTCCGgtaaaggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from CESAR GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG gggggtggcatgcctaacttaaagagtaccttctcccttcttctctctagGTTGTAGAAGATGGCTATGAGTTCTTTGCAAAGAGGCAGCTGGTGACACTCTTCTCGGCTCCCAACTACTGTGGAGAGTTTGACCAATGTGGTGCCATGATGAGCGTGGACAAGACCCTCATGTGTTCCAGAGCCTTTCCGgtaaaggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from Spaln_aa2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG gggggtggcatgcctaacttaaagagtaccttctcccttcttctctctagGTTGTAGAAGATGGCTATGAGTTCTTTGCAAAGAGGCAGCTGGTGACACTCTTCTCGGCTCCCAACTACTGTGGAGAGTTTGACCAATGTGGTGCCATGATGAGCGTGGACAAGACCCTCATGTGTTCCAGAGCCTTTCCGgtaaaggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from Spaln_nt2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG gggggtggcatgcctaacttaaagagtaccttctcccttcttctctctagGTTGTAGAAGATGGCTATGAGTTCTTTGCAAAGAGGCAGCTGGTGACACTCTTCTCGGCTCCCAACTACTGTGGAGAGTTTGACCAATGTGGTGCCATGATGAGCGTGGACAAGACCCTCATGTGTTCCAGAGCCTTTCCGgtaaaggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from Pairagon GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC-------------------------------------------------------------- gggggtggcatgcctaacttaaagagtaccttctcccttcttctctctagGTTGTAGAAGATGGCTATGAGTTCTTTGCAAAGAGGCAGCTGGTGACACTCTTCTCGGCTCCCAACTACTGTGGAGAGTTTGACCAATGTGGTGCCATGATGAGCGTGGACAAGACCCTCATGTGTTCCAGAGCCTTTCCGGTAAAGGTGGGGAATAGCCTGCCCTATAGAAGCTGGCTCAACCCTAGGAC Alignment from Exonerate_protein2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG gggggtggcatgcctaacttaaagagtaccttctcccttcttctctctagGTTGTAGAAGATGGCTATGAGTTCTTTGCAAAGAGGCAGCTGGTGACACTCTTCTCGGCTCCCAACTACTGTGGAGAGTTTGACCAATGTGGTGCCATGATGAGCGTGGACAAGACCCTCATGTGTTCCAGAGCCTTTCCGgtaaaggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from Exonerate_coding2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG gggggtggcatgcctaacttaaagagtaccttctcccttcttctctctagGTTGTAGAAGATGGCTATGAGTTCTTTGCAAAGAGGCAGCTGGTGACACTCTTCTCGGCTCCCAACTACTGTGGAGAGTTTGACCAATGTGGTGCCATGATGAGCGTGGACAAGACCCTCATGTGTTCCAGAGCCTTTCCGgtaaaggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from GeneWise GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG gggggtggcatgcctaacttaaagagtaccttctcccttcttctctctagGTTGTAGAAGATGGCTATGAGTTCTTTGCAAAGAGGCAGCTGGTGACACTCTTCTCGGCTCCCAACTACTGTGGAGAGTTTGACCAATGTGGTGCCATGATGAGCGTGGACAAGACCCTCATGTGTTCCAGAGCCTTTCCGgtaaaggtggggaatagcctgccctatagaagctggctcaaccctaggac #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGG-GACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttctgtgaaggggtgatacccgtccgtttgtctgtctccccagGGAAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGCGACACTGGAT-CAGCCGAGTGAATGAAAGGACTTTAAACCCCAGAgtaattggcactgggagaagggaaagagacagtggtagatcaggggtgtt Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttctgtgaaggggtgatacccgtccgtttgtctgtctccccagGGAAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGCGACACTGGATCAGCCGAGTGAATGAAAGGACTTTAAACCCCAGAgtaattggcactgggagaagggaaagagacagtggtagatcaggggtgtt Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttctgtgaaggggtgatacccgtccgtttgtctgtctccccagGGAAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGCGACACTGGATCAGCCGAGTGAATGAAAGGACTTTAAACCCCAGAgtaattggcactgggagaagggaaagagacagtggtagatcaggggtgtt Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttctgtgaaggggtgatacccgtccgtttgtctgtctccccagGGAAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGCGACACTGGATCAGCCGAGTGAATGAAAGGACTTTAAACCCCAGAgtaattggcactgggagaagggaaagagacagtggtagatcaggggtgtt Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGG-GACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttctgtgaaggggtgatacccgtccgtttgtctgtctccccagGGAAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGCGACACTGGA-TCAGCCGAGTGAATGAAAGGACTTTAAACCCCAGAgtaattggcactgggagaagggaaagagacagtggtagatcaggggtgtt Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttctgtgaaggggtgatacccgtccgtttgtctgtctccccagGGAAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGCGACACTGGATCAGCCGAGTGAATGAAAGGACTTTAAACCCCAGAgtaattggcactgggagaagggaaagagacagtggtagatcaggggtgtt Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttctgtgaaggggtgatacccgtccgtttgtctgtctccccagGGAAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGCGACACTGGATCAGCCGAGTGAATGAAAGGACTTTAAACCCCAGAgtaattggcactgggagaagggaaagagacagtggtagatcaggggtgtt Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acatggtttctgtgaaggggtgatacccgtccgtttgtctgtctccccagGGAAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGCGACACTGGATCAGCCGAGTGAATGAAAGGACTTTAAACCCCAGAgtaattggcactgggagaagggaaagagacagtggtagatcaggggtgtt #### Ppp1r32_ID2844_7 --> 0 - 0 Original Alignment GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTC-CCTGTAACTCACCCTCAG gtctgccacacacatctaatttccactgcaaacaaatctcttttaaccagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCTTCCCTC-AACTCACCCTCAGgtgagttctgtgttgctaaggggacagggctacctatgggtacagttata Alignment from CESAR GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgccacacacatctaatttccactgcaaacaaatctcttttaaccagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCTTCCCTCAACTCACCCTCAGgtgagttctgtgttgctaaggggacagggctacctatgggtacagttata Alignment from Spaln_aa2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgccacacacatctaatttccactgcaaacaaatctcttttaaccagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCTTCCCTCAACTCACCCTCAGgtgagttctgtgttgctaaggggacagggctacctatgggtacagttata Alignment from Spaln_nt2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgccacacacatctaatttccactgcaaacaaatctcttttaaccagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCTTCCCTCAACTCACCCTCAGgtgagttctgtgttgctaaggggacagggctacctatgggtacagttata Alignment from Pairagon GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgccacacacatctaatttccactgcaaacaaatctcttttaaccagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCTTCCCTCAACTCACCCTCAGgtgagttctgtgttgctaaggggacagggctacctatgggtacagttata Alignment from Exonerate_protein2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgccacacacatctaatttccactgcaaacaaatctcttttaaccagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCTTCCCTCAACTCACCCTCAGgtgagttctgtgttgctaaggggacagggctacctatgggtacagttata Alignment from Exonerate_coding2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgccacacacatctaatttccactgcaaacaaatctcttttaaccagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCTTCCCTCAACTCACCCTCAGgtgagttctgtgttgctaaggggacagggctacctatgggtacagttata Alignment from GeneWise GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgccacacacatctaatttccactgcaaacaaatctcttttaaccagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCTTCCCTCAACTCACCCTCAGgtgagttctgtgttgctaaggggacagggctacctatgggtacagttata #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGATGATTCTTTG-GTGTCTCTCTTTGGGAATCGTCGGCTGAAAag tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGCGTGT-TCTCTTTGGGAATCATTGGCTGAAAaggtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGCGTGTTCTCTTTGGGAATCATTGGCTGAAAaggtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGCGTGTTCTCTTTGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGCGTGTTCTCTTTGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from Pairagon GCGACAGACTTATTATTGGATGATTCTTTG-GTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGCGTGT-TCTCTTTGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGCGTGTTCTCTTTGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from Exonerate_coding2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGCGTGTTCTCTTTGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from GeneWise GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGCGTGTTCTCTTTGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAA-GCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAG-TCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAA-GCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAG-TCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAACGCCGGAGTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagttGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCA-CAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagttGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCCTCTGCCACAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCCATGGATTTGGGT-GAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTCGAGC-GGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTCGAGCGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTCGAGCGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTCGAGCGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from Pairagon GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTCGAGCGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTCGAGCGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTCGAGCGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTCGAGCGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCT-ACTGTGCTAACCACGGAGCGTAAGAAG agtatgctttgttccaacataattatttgttctaccccatcccccaccagCTTCAAGACAAGGCTCACTGTGT-AACCACGGAACGTAAGAAGgtaacttgctgtctgttatgaacattgctgcatttttggagagaagtgta Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agtatgctttgttccaacataattatttgttctaccccatcccccaccagCTTCAAGACAAGGCTCACTGTGTAACCACGGAACGTAAGAAGgtaacttgctgtctgttatgaacattgctgcatttttggagagaagtgta Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agtatgctttgttccaacataattatttgttctaccccatcccccaccagCTTCAAGACAAGGCTCACTGTGTAACCACGGAACGTAAGAAGgtaacttgctgtctgttatgaacattgctgcatttttggagagaagtgta Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agtatgctttgttccaacataattatttgttctaccccatcccccaccagCTTCAAGACAAGGCTCACTGTGTAACCACGGAACGTAAGAAGgtaacttgctgtctgttatgaacattgctgcatttttggagagaagtgta Alignment from Pairagon CTTCAAGACAAGGCT-ACTGTGCTAACCACGGAGCGTAAGAAG agtatgctttgttccaacataattatttgttctaccccatcccccaccagCTTCAAGACAAGGCTCACTGTG-TAACCACGGAACGTAAGAAGgtaacttgctgtctgttatgaacattgctgcatttttggagagaagtgta Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agtatgctttgttccaacataattatttgttctaccccatcccccaccagCTTCAAGACAAGGCTCACTGTGTAACCACGGAACGTAAGAAGgtaacttgctgtctgttatgaacattgctgcatttttggagagaagtgta Alignment from Exonerate_coding2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agtatgctttgttccaacataattatttgttctaccccatcccccaccagCTTCAAGACAAGGCTCACTGTGTAACCACGGAACGTAAGAAGgtaacttgctgtctgttatgaacattgctgcatttttggagagaagtgta Alignment from GeneWise CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agtatgctttgttccaacataattatttgttctaccccatcccccaccagCTTCAAGACAAGGCTCACTGTGTAACCACGGAACGTAAGAAGgtaacttgctgtctgttatgaacattgctgcatttttggagagaagtgta #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCT-GACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTCGACATCCAGA-AGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTCGACATCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTCGACATCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTCGACATCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from Pairagon TACTGGGCCTTCTCT-GACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTCGACATCCAGA-AGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTCGACATCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from Exonerate_coding2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTCGACATCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTCGACATCCAGAAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTC-ATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCCATCTTTGGAA-AGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCCATCTTTGGAAAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCCATCTTTGGAAAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCCATCTTTGGAAAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCTGATGGGCT-CATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCCATCTTTGGAA-AGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCCATCTTTGGAAAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCCATCTTTGGAAAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCCATCTTTGGAAAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg #### Pygm_ID1679_3 --> 0 - 1 Original Alignment CTGGGCTTGGACATGGAGGAGTTG-GAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAg ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGCGAGGAGATCG-GGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAggtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from CESAR CTGGGCTTGGACATGGAGGAGTTG-GAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAg ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGCGAGGAGATC-GGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAggtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Spaln_aa2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGCGAGGAGATCGGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Spaln_nt2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGCGAGGAGATCGGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Pairagon CTGGGCTTGGACATGGAGGAGTTG-GAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGCGAGGAGATCG-GGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Exonerate_protein2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGCGAGGAGATCGGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Exonerate_coding2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGCGAGGAGATCGGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from GeneWise CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGCGAGGAGATCGGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt #### Pygm_ID1687_11 --> 0 - 2 Original Alignment CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGC-ATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCCATGTCACTTG-GGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCatgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from CESAR CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCCATGTCACTTGGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCatgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from Spaln_aa2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCCATGTCACTTGGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from Spaln_nt2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCCATGTCACTTGGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from Pairagon CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCG-CATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCCATGTCACTTG-GGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from Exonerate_protein2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCCATGTCACTTGGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from Exonerate_coding2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCCATGTCACTTGGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from GeneWise CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCCATGTCACTTGGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc #### Pygm_ID1689_13 --> 0 - 0 Original Alignment CGCATTGGTGAG-GACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGCGACT-TGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from CESAR CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGCGACTTGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from Spaln_aa2Genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGCGACTTGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from Spaln_nt2Genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGCGACTTGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from Pairagon CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGCGACTTGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from Exonerate_protein2genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGCGACTTGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from Exonerate_coding2genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGCGACTTGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from GeneWise CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGCGACTTGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGC-CAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagaTTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCCAGGACA-AGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagaTTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCCAGGACAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCCAGGACAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCCAGGACAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCCAGGACAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCCAGGACAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Exonerate_coding2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCCAGGACAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCCAGGACAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga #### Rasgrp2_ID1706_5 --> 1 - 0 Original Alignment cCCTACCTACAAATGGAAGCGGCAGGTG-ACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagcCCTACTTACAAATGGAAGCGGCAGGTGCACCC-GCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from CESAR cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagcCCTACTTACAAATGGAAGCGGCAGGTGCACCCGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from Spaln_aa2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGCACCCGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from Spaln_nt2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGCACCCGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from Pairagon CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGCACCCGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from Exonerate_protein2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGCACCCGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from Exonerate_coding2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGCACCCGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg Alignment from GeneWise CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaaggaggtgacatttccagcacaaggtgaccttgtctttgccttctagCCCTACTTACAAATGGAAGCGGCAGGTGCACCCGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtatgtcctgaaggcttgttgtcggggtcaaggtcgagtgtgggttgatg #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTG-TTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGCTTGGAAG-GTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from CESAR CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGCTTGGAAGGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGCTTGGAAGGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGCTTGGAAGGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from Pairagon CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGCTTGGAAGGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGCTTGGAAGGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGCTTGGAAGGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGCTTGGAAGGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTG-GACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGG-TCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGaggtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from CESAR TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGaggtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Pairagon TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTG-GACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAA-GGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Exonerate_coding2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc #### Rce1_ID576_6 --> 2 - 1 Original Alignment TCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGC-AGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtaagactcaccttgtaaggccgtctttatttcagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCCAGTGTGGGGA-TATCTTTGTGTCTGCAggtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from CESAR TCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtgcctctcaccttgtaaggccgtctttatttcagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCCAGTGTGGGGATATCTTTGTGTCTGCAggtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Spaln_aa2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCCAGTGTGGGGATATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Spaln_nt2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGC-AGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCCAGTGTGGGGA-TATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Pairagon TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAG-CAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCCAGTGTGGGGA-TATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Exonerate_protein2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCCAGTGTGGGGATATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Exonerate_coding2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCCAGTGTGGGGATATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from GeneWise TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCCAGTGTGGGGATATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg #### Rce1_ID578_4 --> 0 - 1 Original Alignment ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACA-GATGGGCTGAAGGTTGTCCTGg taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCAGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTAACACGATGGGC-GAAGGTTGTCCTAggtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from CESAR ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCAGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTAACACGATGGGCGAAGGTTGTCCTAggtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from Spaln_aa2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCAGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTAACACGATGGGCGAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from Spaln_nt2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCAGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTAACACGATGGGCGAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from Pairagon ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACA-GATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCAGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTAACACGATGGGC-GAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from Exonerate_protein2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCAGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTAACACGATGGGCGAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from Exonerate_coding2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCAGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTAACACGATGGGCGAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg Alignment from GeneWise ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG taaaggtatttcaccttgtgtttccccgcactctgcccctcttgttgcagATCCTTTTCCCAGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTAACACGATGGGCGAAGGTTGTCCTAGgtaagacttgaagactgtgaaaaaggtaggcacaggcagcctagaacatg #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTG-CTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacaggGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCCTGCTCTGGA-GGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacaggGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCCTGCTCTGGAGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCCTGCTCTGGAGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGC-TGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCCTGCTCTGGA-GGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTG-CTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCCTGCTCTGGA-GGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCCTGCTCTGGAGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCCTGCTCTGGAGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCCTGCTCTGGAGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat #### Rcor2_ID2091_2 --> 2 - 1 Original Alignment agAGCCCTGCACGCTATAGCAACAAG-GAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAc cttctgggcctgacctccacctccttgcttccacccatcatccaccacagagAGCCCTGCACGCTATAGCAACAAGCGAGCTAAAGG-AATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAcgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from CESAR agAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAc cttctgggcctgacctccacctccttgcttccacccatcatccaccacagagAGCCCTGCACGCTATAGCAACAAGCGAGCTAAAGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAcgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from Spaln_aa2Genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGCGAGCTAAAGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from Spaln_nt2Genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGCGAGCTAAAGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from Pairagon AGAGCCCTGCACGCTATAGCAACAAG-GAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGCGAGCT-AAAGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from Exonerate_protein2genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGCGAGCTAAAGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from Exonerate_coding2genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGCGAGCTAAAGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from GeneWise AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGCGAGCTAAAGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac #### Rcor2_ID2093_4 --> 0 - 0 Original Alignment GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCT-GATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagcgctgccatggccaaacctgttgtctcttctttcttctctagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTCGCCAATTTCACTCCCTTTCCACGATG-GTGGACAGTAGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagcctatgcttggggccccttgaatactcctctgccctttagtcaca Alignment from CESAR GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagcgctgccatggccaaacctgttgtctcttctttcttctctagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTCGCCAATTTCACTCCCTTTCCACGATGGTGGACAGTAGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagcctatgcttggggccccttgaatactcctctgccctttagtcaca Alignment from Spaln_aa2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagcgctgccatggccaaacctgttgtctcttctttcttctctagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTCGCCAATTTCACTCCCTTTCCACGATGGTGGACAGTAGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagcctatgcttggggccccttgaatactcctctgccctttagtcaca Alignment from Spaln_nt2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagcgctgccatggccaaacctgttgtctcttctttcttctctagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTCGCCAATTTCACTCCCTTTCCACGATGGTGGACAGTAGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagcctatgcttggggccccttgaatactcctctgccctttagtcaca Alignment from Pairagon GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCC-TGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagcgctgccatggccaaacctgttgtctcttctttcttctctagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTCGCCAATTTCACTCCCTTTCCACGATG-GTGGACAGTAGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagcctatgcttggggccccttgaatactcctctgccctttagtcaca Alignment from Exonerate_protein2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagcgctgccatggccaaacctgttgtctcttctttcttctctagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTCGCCAATTTCACTCCCTTTCCACGATGGTGGACAGTAGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagcctatgcttggggccccttgaatactcctctgccctttagtcaca Alignment from Exonerate_coding2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagcgctgccatggccaaacctgttgtctcttctttcttctctagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTCGCCAATTTCACTCCCTTTCCACGATGGTGGACAGTAGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagcctatgcttggggccccttgaatactcctctgccctttagtcaca Alignment from GeneWise GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagcgctgccatggccaaacctgttgtctcttctttcttctctagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTCGCCAATTTCACTCCCTTTCCACGATGGTGGACAGTAGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagcctatgcttggggccccttgaatactcctctgccctttagtcaca #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGG-CTGGGTGGCCGCAAGGACAAAGAAGACag ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCCTGG-TGGCCGCAAGGACAAAGAAGACaggtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCCTGGTGGCCGCAAGGACAAAGAAGACaggtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCCTGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCCTGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCCTGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCCTGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCCTGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgagggcagagtctcatgtggcctcctacgtccttccttacctgtccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCCTGGTGGCCGCAAGGACAAAGAAGACAGgtgagtattgcagctgctgaccttgggaaatgggtagggggctaacagta #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGAT-ACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagagCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATCACCACAAAGA-ACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from CESAR agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagagCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATCACCACAAAGAACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATCACCACAAAGAACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from Spaln_nt2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGAT-ACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATCACCACAAAGA-ACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from Pairagon AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGAT-ACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATCACCACAAAGA-ACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATCACCACAAAGAACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from Exonerate_coding2genome GAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtaGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATCACCACAAAGAACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from GeneWise GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctgcaagaagaacacctga---------ATTCTTGTTGTTACTGTTGTAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATCACCACAAAGAACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGAC-CTCTGCCCAGACCGCAGTATCCATag gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCCTCTGCC-AGACCGCAGTATCCATaggtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from CESAR ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCCTCTGCCAGACCGCAGTATCCATaggtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCCTCTGCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCCTCTGCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Pairagon ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCCTCTGCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCCTCTGCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Exonerate_coding2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCCTCTGCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from GeneWise ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCCTCTGCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac #### Rela_ID1128_5 --> 1 - 1 Original Alignment cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAG-CGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagcTTCCAGAACCTGGGAATACAGTGTGTGAAGAAGCCGAGACC-GGAGCAAGCCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATggtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from CESAR cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagcTTCCAGAACCTGGGAATACAGTGTGTGAAGAAGCCGAGACCGGAGCAAGCCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATggtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from Spaln_aa2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGTGTGTGAAGAAGCCGAGACCGGAGCAAGCCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from Spaln_nt2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGTGTGTGAAGAAGCCGAGACCGGAGCAAGCCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from Pairagon CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAG-CGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGTGTGTGAAGAAGCCGAGACC-GGAGCAAGCCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from Exonerate_protein2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGTGTGTGAAGAAGCCGAGACCGGAGCAAGCCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from Exonerate_coding2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGTGTGTGAAGAAGCCGAGACCGGAGCAAGCCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct Alignment from GeneWise CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tgcaagaaggggttttgctggtgacacactgttccctgcccccatcccagCTTCCAGAACCTGGGAATACAGTGTGTGAAGAAGCCGAGACCGGAGCAAGCCATTAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgcaaggggggaaagtcatttgatcttcatatgaaacatgtatct #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCag cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcaggtGTCTCTTTGGAGGTCTCAGAGCTCATGTTCCAGGACCTCGTACAGCTCCATC------TATTGTCGTACCaggtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from CESAR gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCag cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcaggtGTCTCTTTGGAGGTCTCAGAGCTCATGTTCCAGGACCTCGTACAGCTCCATC------TATTGTCGTACCaggtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCA cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCAGAGCTCATGTTCCAGGACCTCGTACAgctccatctattgtcgtaccaggtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTC-ATCTGTGGATACTGCCGTACCAG cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCAGAGCTCATGTTCCAGGACCTCGTACAGCTCCATC------TATTGTCGTACCAGgtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from Pairagon GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCT-CATCTGTGGATACTGCCGTACCAG cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCAGAGCTCATGTTCCAGGACCTCGTACAGCTCCATC------TATTGTCGTACCAGgtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTG cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCAGAGCTCATGTTCCAGGACCTCgtacagctccatctattgtcgtaccaggtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from Exonerate_coding2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTG cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCAGAGCTCATGTTCCAGGACCTCgtacagctccatctattgtcgtaccaggtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg Alignment from GeneWise GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGT-- cacatgcgggaggtcctcagtgaaacagtttggcctctcgttcctttcagGTGTCTCTTTGGAGGTCTCAGAGCTCATGTTCCAGGACCTCGTACAGCTCCATCTATTgtcgtaccaggtatagctacctgtgggcacctgctgagctttcaaccccactcactgctg #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCT-AGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTCAGTGCCC-GGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTCAGTGCCCGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTCAGTGCCCGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTCAGTGCCCGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCT-AGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTCAGTGCCC-GGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTCAGTGCCCGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTCAGTGCCCGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTCAGTGCCCGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATG-TCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGg ccttcagacctctgaggaggctggactccaaatttcttctttatttttaggaGAAAATGCAGGAGCTGATGAGTTCCTACCCCTGCTAAGCCTCGTTTTGGCGCAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGCTCAG-GCTCCTCGAACCAACCCTGCTCACTGGGGAGggtaagtgtccctcatttcttttctgggtggagctggcgcttgtgggtaaa Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGg ccttcagacctctgaggaggctggactccaaatttcttctttatttttaggaGAAAATGCAGGAGCTGATGAGTTCCTACCCCTGCTAAGCCTCGTTTTGGCGCAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGCTCAGGCTCCTCGAACCAACCCTGCTCACTGGGGAGggtaagtgtccctcatttcttttctgggtggagctggcgcttgtgggtaaa Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGG ccttcagacctctgaggaggctggactccaaatttcttctttatttttagGAGAAAATGCAGGAGCTGATGAGTTCCTACCCCTGCTAAGCCTCGTTTTGGCGCAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGCTCAGGCTCCTCGAACCAACCCTGCTCACTGGGGAGGgtaagtgtccctcatttcttttctgggtggagctggcgcttgtgggtaaa Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGG ccttcagacctctgaggaggctggactccaaatttcttctttatttttagGAGAAAATGCAGGAGCTGATGAGTTCCTACCCCTGCTAAGCCTCGTTTTGGCGCAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGCTCAGGCTCCTCGAACCAACCCTGCTCACTGGGGAGGgtaagtgtccctcatttcttttctgggtggagctggcgcttgtgggtaaa Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGG ccttcagacctctgaggaggctggactccaaatttcttctttatttttagGAGAAAATGCAGGAGCTGATGAGTTCCTACCCCTGCTAAGCCTCGTTTTGGCGCAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGCTCAGGCTCCTCGAACCAACCCTGCTCACTGGGGAGGgtaagtgtccctcatttcttttctgggtggagctggcgcttgtgggtaaa Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGG ccttcagacctctgaggaggctggactccaaatttcttctttatttttagGAGAAAATGCAGGAGCTGATGAGTTCCTACCCCTGCTAAGCCTCGTTTTGGCGCAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGCTCAGGCTCCTCGAACCAACCCTGCTCACTGGGGAGGgtaagtgtccctcatttcttttctgggtggagctggcgcttgtgggtaaa Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGG ccttcagacctctgaggaggctggactccaaatttcttctttatttttagGAGAAAATGCAGGAGCTGATGAGTTCCTACCCCTGCTAAGCCTCGTTTTGGCGCAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGCTCAGGCTCCTCGAACCAACCCTGCTCACTGGGGAGGgtaagtgtccctcatttcttttctgggtggagctggcgcttgtgggtaaa Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGG ccttcagacctctgaggaggctggactccaaatttcttctttatttttagGAGAAAATGCAGGAGCTGATGAGTTCCTACCCCTGCTAAGCCTCGTTTTGGCGCAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGCTCAGGCTCCTCGAACCAACCCTGCTCACTGGGGAGGgtaagtgtccctcatttcttttctgggtggagctggcgcttgtgggtaaa #### Rnaseh2c_ID1103_2 --> 2 - 0 Original Alignment ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGC-GAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagggCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGG-AGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGGTGACAGAG------------------------------------------------------------GATGAGGCCCAGGAGCCATTGGAGCGAGACTTTgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from CESAR ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagggCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGGTGACAGAG------------------------------------------------------------GATGAGGCCCAGGAGCCATTGGAGCGAGACTTTgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from Spaln_aa2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGGTGACAGAGGAT------------------------------------------------------------GAGGCCCAGGAGCCATTGGAGCGAGACTTTgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from Spaln_nt2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGC--GGACGAGGCGCAGGAGCCGCTGGA tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGGTGACAGAGGATGAGGCCCAGGAGCCATT--GGAGCGAGACTTTGTGCGGATGGGGAGATGGTATGTTTTGGGTGAGG-GCAGTGACTGCTGTA Alignment from Pairagon GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGG-CGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGG-AGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGGTGACAGA------------------------------------------------------------GGATGAGGCCCAGGAGCCATTGGAGCGAGACTTTgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from Exonerate_protein2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAG tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGGTGACAGAGGATGAGGCCCAGgagccattggagcgagactttgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from Exonerate_coding2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAG tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGGTGACAGAGGATGAGGCCCAGgagccattggagcgagactttgtgcggatggggagatggtatgttttgggtgagggcagtgactgctgtac Alignment from GeneWise GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATA---------------------GGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGA tcttgggctttgtggcctgcagcaccactttcttccatcctacttcccagGGCTACAGGCGGCATTTCGTGGTCGTGGCCTGCGGGGTCGAGGAGGAGCCGTGCCGCCGGGGTTTGCAGGATTTGTGATGGTGACAGAGGATGAGGCCCAGGAGCCATTGGAGCGAGACTTTGTGCGGATGGGGAGATGGTATGTTTTGGGTGAGGGCAGTGACTGCTGTAC #### Rpp30_ID7088_8 --> 0 - 0 Original Alignment AATGTAATTCTG-TCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttacattttgttttcctcttcgtttaagAATGTAATTCTGCTCAA-TACTGCAGAGAGGgtgagcgtagctggaatactatgtcccaacagtgacagagcatgaccaca Alignment from CESAR AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttacattttgttttcctcttcgtttaagAATGTAATTCTGCTCAATACTGCAGAGAGGgtgagcgtagctggaatactatgtcccaacagtgacagagcatgaccaca Alignment from Spaln_aa2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttacattttgttttcctcttcgtttaagAATGTAATTCTGCTCAATACTGCAGAGAGGgtgagcgtagctggaatactatgtcccaacagtgacagagcatgaccaca Alignment from Spaln_nt2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttacattttgttttcctcttcgtttaagAATGTAATTCTGCTCAATACTGCAGAGAGGgtgagcgtagctggaatactatgtcccaacagtgacagagcatgaccaca Alignment from Pairagon AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttacattttgttttcctcttcgtttaagAATGTAATTCTGCTCAATACTGCAGAGAGGgtgagcgtagctggaatactatgtcccaacagtgacagagcatgaccaca Alignment from Exonerate_protein2genome tatgttattgatcatctaagatttacattttgttttcctcttcgtttaagaatgtaattctgctcaatactgcagagagggtgagcgtagctggaatactatgtcccaacagtgacagagcatgaccaca Alignment from Exonerate_coding2genome tatgttattgatcatctaagatttacattttgttttcctcttcgtttaagaatgtaattctgctcaatactgcagagagggtgagcgtagctggaatactatgtcccaacagtgacagagcatgaccaca Alignment from GeneWise tatgttattgatcatctaagatttacattttgttttcctcttcgtttaagaatgtaattctgctcaatactgcagagagggtgagcgtagctggaatactatgtcccaacagtgacagagcatgaccaca #### Rpp30_ID7089_9 --> 0 - 2 Original Alignment CCTTTGGAAATA-AGAGGACCATATGACGTGGCAAACtt taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATACAGAG-ACCATACGATGTGGCAAACttgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from CESAR CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACtt taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATACAGAGACCATACGATGTGGCAAACttgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from Spaln_aa2Genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATACAGAGACCATACGATGTGGCAAACTTgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from Spaln_nt2Genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATACAGAGACCATACGATGTGGCAAACTTgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from Pairagon CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATACAGAGACCATACGATGTGGCAAACTTgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from Exonerate_protein2genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATACAGAGACCATACGATGTGGCAAACTTgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from Exonerate_coding2genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATACAGAGACCATACGATGTGGCAAACTTgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from GeneWise CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATACAGAGACCATACGATGTGGCAAACTTgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCT-GTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTCGTCCTGGATA-CATCAAAGAGGGCTTCTCATTCCAGCCCAAGCTGCGTTCTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCaggtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTCGTCCTGGATACATCAAAGAGGGCTTCTCATTCCAGCCCAAGCTGCGTTCTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCaggtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTCGTCCTGGATACATCAAAGAGGGCTTCTCATTCCAGCCCAAGCTGCGTTCTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTCGTCCTGGATACATCAAAGAGGGCTTCTCATTCCAGCCCAAGCTGCGTTCTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from Pairagon GGCTTTACATATGTGGCACCTTCT-GTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTCGTCCTGGATA-CATCAAAGAGGGCTTCTCATTCCAGCCCAAGCTGCGTTCTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTCGTCCTGGATACATCAAAGAGGGCTTCTCATTCCAGCCCAAGCTGCGTTCTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTCGTCCTGGATACATCAAAGAGGGCTTCTCATTCCAGCCCAAGCTGCGTTCTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagataccaacattactagtcatgtaatctatcttacagGGTTTTACATATGTGGCACCTTCTCGTCCTGGATACATCAAAGAGGGCTTCTCATTCCAGCCCAAGCTGCGTTCTCCAAGACGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtaaggggcagggcaggtaggtgtctagtgaagggttcccaaacatggac #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGAC-ACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACCACAGCCCTAA-TGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACCACAGCCCTAATGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACCACAGCCCTAATGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACCACAGCCCTAATGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGA-CACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACCACAGCCCT-AATGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACCACAGCCCTAATGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACCACAGCCCTAATGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACCACAGCCCTAATGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTG-GACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCAATTGGGATGACCTCTTGGCCTGCCGTGTGCGACCCTCTCT-CAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from CESAR AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCAATTGGGATGACCTCTTGGCCTGCCGTGTGCGACCCTCTCTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from Spaln_aa2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCAATTGGGATGACCTCTTGGCCTGCCGTGTGCGACCCTCTCTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTG-GACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCAATTGGGATGACCTCTTGGCCTGCCGTGTGCGACCCTCTC-TCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from Pairagon AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTG-GACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCAATTGGGATGACCTCTTGGCCTGCCGTGTGCGACCCTCTC-TCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from Exonerate_protein2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCAATTGGGATGACCTCTTGGCCTGCCGTGTGCGACCCTCTCTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from Exonerate_coding2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCAATTGGGATGACCTCTTGGCCTGCCGTGTGCGACCCTCTCTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from GeneWise AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCAATTGGGATGACCTCTTGGCCTGCCGTGTGCGACCCTCTCTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc #### Rps6kb2_ID372_10 --> 0 - 0 Original Alignment CCGCCCTTCACTGCAGAGAACCGGAAGAAA-ACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAACACTACAG-TAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCAGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from CESAR CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAACACTACAGTAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCAGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from Spaln_aa2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAACACTACAGTAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCAGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from Spaln_nt2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAACACTACAGTAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCAGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from Pairagon CCGCCCTTCACTGCAGAGAACCGGAAGAAA-ACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAACACTACAG-TAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCAGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from Exonerate_protein2genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAACACTACAGTAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCAGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from Exonerate_coding2genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAACACTACAGTAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCAGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from GeneWise CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAACACTACAGTAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCAGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATC-ATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagcTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCCATCT-CCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagcTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCCATCTCCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCCATCTCCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCCATCTCCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCCATCTCCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCCATCTCCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCCATCTCCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCCATCTCCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAAGAAGTAGAG-CTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacaggACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGAGA-CAGCGTGAACCTTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from CESAR gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacaggACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGAGACAGCGTGAACCTTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGAGACAGCGTGAACCTTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGAGACAGCGTGAACCTTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from Pairagon GACAGTGGGACACTATGAAGAAGTAGAG-CTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGAGA-CAGCGTGAACCTTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGAGACAGCGTGAACCTTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from Exonerate_coding2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGAGACAGCGTGAACCTTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG gccttggagtacactagaacttttccctagagtctgcttctctcgcacagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGAGACAGCGTGAACCTTGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGTTACTTAGTGTACTGGGTAAGGGGGGCTATGGCAAGgtggggacatcctgctctccctggcagcttcagccctagtctgattaacc #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCT-GAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagcATCGAGGAAATTTCGGCTGATTCACGAGGATG-GTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTggtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagcATCGAGGAAATTTCGGCTGATTCACGAGGATGGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTggtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATGGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCT-GAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATG-GTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTC-TGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATG-GTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATG---GAAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATGGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from Exonerate_coding2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATGGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATGGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAG-TTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGCTTCATAGCTG-TCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGCTTCATAGCTGTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGCTTCATAGCTGTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAG-TTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGCTTCATAGCTG-TCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAG-TTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGCTTCATAGCTG-TCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGCTTCATAGCTGTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from Exonerate_coding2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGCTTCATAGCTGTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGCTTCATAGCTGTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga #### Rrp12_ID8304_19 --> 0 - 2 Original Alignment TTGGTGAATAGCTTCCTG-GAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGCGACAAAGCAA-CGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCaggtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from CESAR TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGCGACAAAGCAACGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCaggtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Spaln_aa2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGCGACAAAGCAACGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Spaln_nt2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGCGACAAAGCAACGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Pairagon TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGCGACAAAGCAACGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Exonerate_protein2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGCGACAAAGCAACGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Exonerate_coding2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGCGACAAAGCAACGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from GeneWise TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGCGACAAAGCAACGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag #### Rrp12_ID8315_8 --> 2 - 0 Original Alignment gtTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCG-GAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcaggtTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGCGAAGGCC-GGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from CESAR gtTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcaggtTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGCGAAGGCCGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Spaln_aa2Genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGCGAAGGCCGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Spaln_nt2Genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGCGAAGGCCGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Pairagon GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGCGAAGGCCGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Exonerate_protein2genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGCGAAGGCCGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Exonerate_coding2genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGCGAAGGCCGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from GeneWise GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGCGAAGGCCGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACG-CCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATACACCCCC-GGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATgcgtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATACACCCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATgcgtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATACACCCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATACACCCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATACACCCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATACACCCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATACACCCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctaccactggtcttgcttttacttgggttacagCTCCTTAAGAAAATGAGCTCCAGCGATACACCCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCCTATATCGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagtgtgggtaggagctggaagggtgggtagtaagctgaaggatgggt #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACA-GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat ctccgagggttctgtctgaagcctgggattttattactttatgaatataggaCTGCTAGAGACCACACGTACAAAAGG-GGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGatgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from CESAR gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat ctccgagggttctgtctgaagcctgggattttattactttatgaatataggaCTGCTAGAGACCACACGTACAAAAGGGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGatgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACACGTACAAAAGGGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from Spaln_nt2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACACGTACAAAAGGGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from Pairagon GACTGCTGGAGACCACA-GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACACGTACAAAAGG-GGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACACGTACAAAAGGGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from Exonerate_coding2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACACGTACAAAAGGGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from GeneWise GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACACGTACAAAAGGGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGC-CGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCCGTACAC-GGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCCGTACACGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCCGTACACGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCCGTACACGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCC---GCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCCGTACAC---GGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCCGTACACGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCCGTACACGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccataaacttggggtctgcccacagaatggattgtgttttgttacagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCAGAGAGGAAGGGGACCTTAGTGTTCAATGCCACTTCGGAATTCTGCCCGTACACGGGGGAGATCCCCACCTATGGGTTGGCCGGCAACCGTGAGGGGCAGGAAGAGCTCATGgttagtcaagtgtttcctggcttttgtccttaggctgctgatttctgctt #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGT-TCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTCTCTATTC-GGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTCTCTATTCGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTCTCTATTCGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTCTCTATTCGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from Pairagon CAAAAACCTCGT-TCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTCTCTATTC-GGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTCTCTATTCGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTCTCTATTCGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTCTCTATTCGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGG-GAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacgtgacagatggtgactgttttttttcatgtttaattacagggGTACTCCAGGACGGGCGAAGATG-GCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGATGAGAGTGTGGATGACTTGGCACAGgtcagtctgtgggacagccgctggggctgatggtgtttgctaaaaaatct Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacgtgacagatggtgactgttttttttcatgtttaattacagggGTACTCCAGGACGGGCGAAGATGGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGATGAGAGTGTGGATGACTTGGCACAGgtcagtctgtgggacagccgctggggctgatggtgtttgctaaaaaatct Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacgtgacagatggtgactgttttttttcatgtttaattacagGGGTACTCCAGGACGGGCGAAGATGGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGATGAGAGTGTGGATGACTTGGCACAGgtcagtctgtgggacagccgctggggctgatggtgtttgctaaaaaatct Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacgtgacagatggtgactgttttttttcatgtttaattacagGGGTACTCCAGGACGGGCGAAGATGGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGATGAGAGTGTGGATGACTTGGCACAGgtcagtctgtgggacagccgctggggctgatggtgtttgctaaaaaatct Alignment from Pairagon GGGTACTGCAGGACGGG-GAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacgtgacagatggtgactgttttttttcatgtttaattacagGGGTACTCCAGGACGGGCGAAGATG-GCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGATGAGAGTGTGGATGACTTGGCACAGgtcagtctgtgggacagccgctggggctgatggtgtttgctaaaaaatct Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacgtgacagatggtgactgttttttttcatgtttaattacagGGGTACTCCAGGACGGGCGAAGATGGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGATGAGAGTGTGGATGACTTGGCACAGgtcagtctgtgggacagccgctggggctgatggtgtttgctaaaaaatct Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacgtgacagatggtgactgttttttttcatgtttaattacagGGGTACTCCAGGACGGGCGAAGATGGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGATGAGAGTGTGGATGACTTGGCACAGgtcagtctgtgggacagccgctggggctgatggtgtttgctaaaaaatct Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacgtgacagatggtgactgttttttttcatgtttaattacagGGGTACTCCAGGACGGGCGAAGATGGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGATGAGAGTGTGGATGACTTGGCACAGgtcagtctgtgggacagccgctggggctgatggtgtttgctaaaaaatct #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAA-GGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAACGGGGAGACTG-GGTTCTCACCCTCAAGGACAAAggtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from CESAR GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAACGGGGAGACTGGGTTCTCACCCTCAAGGACAAAggtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAACGGGGAGACTGGGTTCTCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAACGGGGAGACTGGGTTCTCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAA-GGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAACGGGGAGACTG-GGTTCTCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAACGGGGAGACTGGGTTCTCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from Exonerate_coding2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAACGGGGAGACTGGGTTCTCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAACGGGGAGACTGGGTTCTCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt #### Sart1_ID971_4 --> 2 - 2 Original Alignment agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATC-AACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagagGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCCAACCCCA-GGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGgggtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from CESAR agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagagGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCCAACCCCAGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGgggtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Spaln_aa2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCCAACCCCAGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Spaln_nt2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCCAACCCCAGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Pairagon AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCCAACCCCAGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Exonerate_protein2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCCAACCCCAGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Exonerate_coding2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCCAACCCCAGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from GeneWise AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCCAACCCCAGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag #### Sart1_ID972_3 --> 1 - 1 Original Alignment tAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAG-GTCAATGCTGTTAAGAAAg attggaagtcccacttctcagggcctaatgaaagcacgcttgtcgcttagtAAACTTCGAGCAAAGTTGGGGCTGAGGCCCCTGGAGCGTCA-TGCTGTTCAGAAAggtgagcgcaaggctggggagggggctgagtggggttctgagggagacatt Alignment from CESAR tAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAg attggaagtcccacttctcagggcctaatgaaagcacgcttgtcgcttagtAAACTTCGAGCAAAGTTGGGGCTGAGGCCCCTGGAGCGTCATGCTGTTCAGAAAggtgagcgcaaggctggggagggggctgagtggggttctgagggagacatt Alignment from Spaln_aa2Genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagtcccacttctcagggcctaatgaaagcacgcttgtcgcttagTAAACTTCGAGCAAAGTTGGGGCTGAGGCCCCTGGAGCGTCATGCTGTTCAGAAAGgtgagcgcaaggctggggagggggctgagtggggttctgagggagacatt Alignment from Spaln_nt2Genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagtcccacttctcagggcctaatgaaagcacgcttgtcgcttagTAAACTTCGAGCAAAGTTGGGGCTGAGGCCCCTGGAGCGTCATGCTGTTCAGAAAGgtgagcgcaaggctggggagggggctgagtggggttctgagggagacatt Alignment from Pairagon TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagtcccacttctcagggcctaatgaaagcacgcttgtcgcttagTAAACTTCGAGCAAAGTTGGGGCTGAGGCCCCTGGAGCGTCATGCTGTTCAGAAAGgtgagcgcaaggctggggagggggctgagtggggttctgagggagacatt Alignment from Exonerate_protein2genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagtcccacttctcagggcctaatgaaagcacgcttgtcgcttagTAAACTTCGAGCAAAGTTGGGGCTGAGGCCCCTGGAGCGTCATGCTGTTCAGAAAGgtgagcgcaaggctggggagggggctgagtggggttctgagggagacatt Alignment from Exonerate_coding2genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagtcccacttctcagggcctaatgaaagcacgcttgtcgcttagTAAACTTCGAGCAAAGTTGGGGCTGAGGCCCCTGGAGCGTCATGCTGTTCAGAAAGgtgagcgcaaggctggggagggggctgagtggggttctgagggagacatt Alignment from GeneWise TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagtcccacttctcagggcctaatgaaagcacgcttgtcgcttagTAAACTTCGAGCAAAGTTGGGGCTGAGGCCCCTGGAGCGTCATGCTGTTCAGAAAGgtgagcgcaaggctggggagggggctgagtggggttctgagggagacatt #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTT-CAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTTTTGAGGCACTCCTTCCAGCGCT-TTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from CESAR CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTTTTGAGGCACTCCTTCCAGCGCTTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from Spaln_aa2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTTTTGAGGCACTCCTTCCAGCGCTTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from Spaln_nt2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTC-AGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTTTTGAGGCACTCCTTCCAGCGCT-TTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from Pairagon CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTT-CAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTTTTGAGGCACTCCTTCCAGCGCT-TTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from Exonerate_protein2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTTTTGAGGCACTCCTTCCAGCGCTTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from Exonerate_coding2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTTTTGAGGCACTCCTTCCAGCGCTTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from GeneWise CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTTTTGAGGCACTCCTTCCAGCGCTTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAG-CCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCCACAAC-GGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCCACAACGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCCACAACGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCCACAACGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGA-GCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCCACAAC-GGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCCACAACGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCCACAACGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCCACAACGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAA-GTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcaggaCCCCAAGACTCGTGGAAACGTCTCTCCTG-CTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcaggaCCCCAAGACTCGTGGAAACGTCTCTCCTGCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGAAACGTCTCTCCTGCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAA-GTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGAAACGTCTCTCCTG-CTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from Pairagon GACCCCAGGACTCCTGGAAA-GTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGAAACGTCTCTCCTG-CTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGAAACGTCTCTCCTGCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGAAACGTCTCTCCTGCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGAAACGTCTCTCCTGCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACT-GCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTCGCCAAGG-AACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAggtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTCGCCAAGGAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAggtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTCGCCAAGGAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTCGCCAAGGAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from Pairagon GCCTCCAAACACACT-GCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTCGCCAAGGAA-CCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTCGCCAAGGAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from Exonerate_coding2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTCGCCAAGGAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTCGCCAAGGAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTT-CAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCCAGT-GTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCCAGTGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCCAGTGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCCAGTGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCCAGTGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCCAGTGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCCAGTGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG--------------------- gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCCAGTGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGGCGAGTGGCAATTGCTTGAGAgtgttggagggaggagctttctgcgtgag #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCA-CACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagatGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACCACT-TCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagatGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACCACTTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACCACTTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACCACTTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACCACTTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACCACTTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACCACTTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACCACTTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTT-ATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTCATGGAGT-CCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTCATGGAGTCCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTCATGGAGTCCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTCATGGAGTCCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTT-ATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTCATGGAGT-CCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTCATGGAGTCCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTCATGGAGTCCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTCATGGAGTCCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCC-ACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCCACAC-TGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAggtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCCACACTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAggtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCCACACTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCCACACTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTG-CCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCCACAC-TGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCCACACTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCCACACTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCCACACTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGC-TCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tacccattaggcctccagttgtgaaagtctaacccctcctttccatttagctGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCCTCTGGAATGC-CATAATTGAAGAGATACAAGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtgagcttgcgtcactatgctaagagtcaccaatacaggttgtcttgcct Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tacccattaggcctccagttgtgaaagtctaacccctcctttccatttagctGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCCTCTGGAATGCCATAATTGAAGAGATACAAGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtgagcttgcgtcactatgctaagagtcaccaatacaggttgtcttgcct Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tacccattaggcctccagttgtgaaagtctaacccctcctttccatttagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCCTCTGGAATGCCATAATTGAAGAGATACAAGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtgagcttgcgtcactatgctaagagtcaccaatacaggttgtcttgcct Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tacccattaggcctccagttgtgaaagtctaacccctcctttccatttagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCCTCTGGAATGCCATAATTGAAGAGATACAAGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtgagcttgcgtcactatgctaagagtcaccaatacaggttgtcttgcct Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGG-CTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tacccattaggcctccagttgtgaaagtctaacccctcctttccatttagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCCTCTGGAATGC-CATAATTGAAGAGATACAAGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtgagcttgcgtcactatgctaagagtcaccaatacaggttgtcttgcct Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tacccattaggcctccagttgtgaaagtctaacccctcctttccatttagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCCTCTGGAATGCCATAATTGAAGAGATACAAGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtgagcttgcgtcactatgctaagagtcaccaatacaggttgtcttgcct Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tacccattaggcctccagttgtgaaagtctaacccctcctttccatttagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCCTCTGGAATGCCATAATTGAAGAGATACAAGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtgagcttgcgtcactatgctaagagtcaccaatacaggttgtcttgcct Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG tacccattaggcctccagttgtgaaagtctaacccctcctttccatttagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCCTCTGGAATGCCATAATTGAAGAGATACAAGTGCTCAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtgagcttgcgtcactatgctaagagtcaccaatacaggttgtcttgcct #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTT-GTGGGGCTCCTAATTGGACCCag tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagaCCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGG-CCTCCTAATTGGACCCaggtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagaCCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGCCTCCTAATTGGACCCaggtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAAC-GATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATCGATC-ACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACcggtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATCGATCACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACcggtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATCGATCACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATCGATCACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAA-CGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATCGATC-ACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATCGATCACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATCGATCACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATCGATCACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAG-CACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCCACAACC-AAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCCACAACCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGTACGCCTGTGGGCTCT-GGGGTCTATCGCCTGCATCAAGGAAAAg gggccagttcaaatgtcctactaatttcttgacacacatgggcttgacagatCAGTATCTGGGAAGTACGCCAGTGGGCTCTCGGGG-CTATCGCCTGCATCAAGGAAAAggtaaggccacttactttcttgggatgtctgtctggactgggagcaaatgg Alignment from CESAR atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg gggccagttcaaatgtcctactaatttcttgacacacatgggcttgacagatCAGTATCTGGGAAGTACGCCAGTGGGCTCTCGGGGCTATCGCCTGCATCAAGGAAAAggtaaggccacttactttcttgggatgtctgtctggactgggagcaaatgg Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctactaatttcttgacacacatgggcttgacagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTCGGGGCTATCGCCTGCATCAAGGAAAAGgtaaggccacttactttcttgggatgtctgtctggactgggagcaaatgg Alignment from Spaln_nt2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctactaatttcttgacacacatgggcttgacagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTCGGGGCTATCGCCTGCATCAAGGAAAAGgtaaggccacttactttcttgggatgtctgtctggactgggagcaaatgg Alignment from Pairagon ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctactaatttcttgacacacatgggcttgacagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTCGGGGCTATCGCCTGCATCAAGGAAAAGgtaaggccacttactttcttgggatgtctgtctggactgggagcaaatgg Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctactaatttcttgacacacatgggcttgacagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTCGGGGCTATCGCCTGCATCAAGGAAAAGgtaaggccacttactttcttgggatgtctgtctggactgggagcaaatgg Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctactaatttcttgacacacatgggcttgacagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTCGGGGCTATCGCCTGCATCAAGGAAAAGgtaaggccacttactttcttgggatgtctgtctggactgggagcaaatgg Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctactaatttcttgacacacatgggcttgacagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTCGGGGCTATCGCCTGCATCAAGGAAAAGgtaaggccacttactttcttgggatgtctgtctggactgggagcaaatgg #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATT-GACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag actgccagattcagtaagtccttgtgaacttttgaacgttttttctgtagACCAAAACGGAAGAAGAAGAAATCCGACCAAACCC-GTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtgagtacagaggctgttcccctagagcagcctgcctgtctgtggctatt Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag actgccagattcagtaagtccttgtgaacttttgaacgttttttctgtagACCAAAACGGAAGAAGAAGAAATCCGACCAAACCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtgagtacagaggctgttcccctagagcagcctgcctgtctgtggctatt Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccttgtgaacttttgaacgttttttctgtagACCAAAACGGAAGAAGAAGAAATCCGACCAAACCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagaggctgttcccctagagcagcctgcctgtctgtggctatt Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccttgtgaacttttgaacgttttttctgtagACCAAAACGGAAGAAGAAGAAATCCGACCAAACCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagaggctgttcccctagagcagcctgcctgtctgtggctatt Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccttgtgaacttttgaacgttttttctgtagACCAAAACGGAAGAAGAAGAAATCCGACCAAACCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagaggctgttcccctagagcagcctgcctgtctgtggctatt Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccttgtgaacttttgaacgttttttctgtagACCAAAACGGAAGAAGAAGAAATCCGACCAAACCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagaggctgttcccctagagcagcctgcctgtctgtggctatt Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccttgtgaacttttgaacgttttttctgtagACCAAAACGGAAGAAGAAGAAATCCGACCAAACCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagaggctgttcccctagagcagcctgcctgtctgtggctatt Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccttgtgaacttttgaacgttttttctgtagACCAAAACGGAAGAAGAAGAAATCCGACCAAACCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagaggctgttcccctagagcagcctgcctgtctgtggctatt #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGA-GATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGACGATT-ATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from CESAR GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGACGATTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from Spaln_aa2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGACGATTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from Spaln_nt2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGACGATTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from Pairagon GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGACGATTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGACGATTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGACGATTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta Alignment from GeneWise GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagccctgataaagtaatatgtagttaatattttctagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGACGATTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaattgtaggctgagtgcctgggagagccagagagggggggaatgagta #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAAT-CGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCCGGTTTACTG-GGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCCGGTTTACTGGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCCGGTTTACTGGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATC-GTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCCGGTTTACTG-GGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAAT-CGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCCGGTTTACTG-GGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCCGGTTTACTGGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCCGGTTTACTGGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCCGGTTTACTGGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAG-TCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagagAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGCTCCG-ATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagagAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGCTCCGATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aagtttttacagttaggagagttggctatgttctgtgttttcaaca gAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGCTCCGATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGCTCCGATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Pairagon AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGCTCCGATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Exonerate_protein2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaaCAGAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGCTCCGATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Exonerate_coding2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaaCAGAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGCTCCGATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from GeneWise AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGCTCCGATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAG-CTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCCTGAAGG-GAGCCAGCAGGAAGAGATGAACTCTCAG---ggtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCCTGAAGGGAGCCAGCAGGAAGAGATGAACTCTCAG---ggtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG- taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCCTGAAGGGAGCCAGCAGGAAGAGATGAACTCTCAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagAT---TGATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCCTGAAGGGAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagAT---TGATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCCTGAAGGGAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCCTGAAGGGAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCCTGAAGGGAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATTGAT---CCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCCTGAAGGGAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTAGAGCGG-CTGCAGACCTACACCCGTCAG tggagcttgtctacccaggaaaccgacatcagcagacttaactcttctagggAGTCGTGAGGAGTTAGTAGAGCGGCCTGCAGA-CTATACCCGTCAGgtatacatttcatgcaggctatgtttcacttttcctgaagtcatttaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttgtctacccaggaaaccgacatcagcagacttaactcttctagggAGTCGTGAGGAGTTAGTAGAGCGGCCTGCAGACTATACCCGTCAGgtatacatttcatgcaggctatgtttcacttttcctgaagtcatttaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttgtctacccaggaaaccgacatcagcagacttaactcttctagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCAGACTATACCCGTCAGgtatacatttcatgcaggctatgtttcacttttcctgaagtcatttaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGC-TGCAGACCTACACCCGTCAG tggagcttgtctacccaggaaaccgacatcagcagacttaactcttctagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCAGA-CTATACCCGTCAGgtatacatttcatgcaggctatgtttcacttttcctgaagtcatttaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTAGAGCGG-CTGCAGACCTACACCCGTCAG tggagcttgtctacccaggaaaccgacatcagcagacttaactcttctagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCAGA-CTATACCCGTCAGgtatacatttcatgcaggctatgtttcacttttcctgaagtcatttaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttgtctacccaggaaaccgacatcagcagacttaactcttctagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCAGACTATACCCGTCAGgtatacatttcatgcaggctatgtttcacttttcctgaagtcatttaaga Alignment from Exonerate_coding2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttgtctacccaggaaaccgacatcagcagacttaactcttctagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCAGACTATACCCGTCAGgtatacatttcatgcaggctatgtttcacttttcctgaagtcatttaaga Alignment from GeneWise GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttgtctacccaggaaaccgacatcagcagacttaactcttctagGGAGTCGTGAGGAGTTAGTAGAGCGGCCTGCAGACTATACCCGTCAGgtatacatttcatgcaggctatgtttcacttttcctgaagtcatttaaga #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGC-AGCGGCGATGCTCCCATCACTGTGca ggatgggggaactgtgtataggggtatagtctctgctgatggtgatttaggAAGACTCCAACTGTGGTGTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATTGTGAATTACTCTAATCGCCAGCGGAGATG-TCCCATCACTGTGaggtaagagatcctcatccacagccattcctggtccccatgacccctgtgcc Alignment from CESAR gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ggatgggggaactgtgtataggggtatagtctctgctgatggtgatttaggAAGACTCCAACTGTGGTGTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATTGTGAATTACTCTAATCGCCAGCGGAGATGTCCCATCACTGTGaggtaagagatcctcatccacagccattcctggtccccatgacccctgtgcc Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatgggggaactgtgtataggggtatagtctctgctgatggtgatttagGAAGACTCCAACTGTGGTGTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATTGTGAATTACTCTAATCGCCAGCGGAGATGTCCCATCACTGTGAGgtaagagatcctcatccacagccattcctggtccccatgacccctgtgcc Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGC-AGCGGCGATGCTCCCATCACTGTGCA ggatgggggaactgtgtataggggtatagtctctgctgatggtgatttagGAAGACTCCAACTGTGGTGTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATTGTGAATTACTCTAATCGCCAGCGGAGATG-TCCCATCACTGTGAGgtaagagatcctcatccacagccattcctggtccccatgacccctgtgcc Alignment from Pairagon GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCG-CAGCGGCGATGCTCCCATCACTGTGCA ggatgggggaactgtgtataggggtatagtctctgctgatggtgatttagGAAGACTCCAACTGTGGTGTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATTGTGAATTACTCTAATCGCCAGCGGAGATG-TCCCATCACTGTGAGgtaagagatcctcatccacagccattcctggtccccatgacccctgtgcc Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatgggggaactgtgtataggggtatagtctctgctgatggtgatttagGAAGACTCCAACTGTGGTGTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATTGTGAATTACTCTAATCGCCAGCGGAGATGTCCCATCACTGTGAGgtaagagatcctcatccacagccattcctggtccccatgacccctgtgcc Alignment from Exonerate_coding2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatgggggaactgtgtataggggtatagtctctgctgatggtgatttagGAAGACTCCAACTGTGGTGTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATTGTGAATTACTCTAATCGCCAGCGGAGATGTCCCATCACTGTGAGgtaagagatcctcatccacagccattcctggtccccatgacccctgtgcc Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatgggggaactgtgtataggggtatagtctctgctgatggtgatttagGAAGACTCCAACTGTGGTGTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATTGTGAATTACTCTAATCGCCAGCGGAGATGTCCCATCACTGTGAGgtaagagatcctcatccacagccattcctggtccccatgacccctgtgcc #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAA-GCTTTAAAGTGTGATTCTga gccaggtggatgtttactccctcagacccctctccaactctggtccccagggCAACCCATCTCAGAGAGTGGAGATCCCAAGGAACGCTT-AAAGTGTGATTCTgagtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from CESAR gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga gccaggtggatgtttactccctcagacccctctccaactctggtccccagggCAACCCATCTCAGAGAGTGGAGATCCCAAGGAACGCTTAAAGTGTGATTCTgagtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from Spaln_aa2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAACGCTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from Spaln_nt2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAACGCTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from Pairagon GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAACGCTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from Exonerate_protein2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAACGCTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from Exonerate_coding2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAACGCTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from GeneWise GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAACGCTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACC-CTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagttATGCCAGAAGCTGGTAGCGAGACCCCTGG-GGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCACGGGAGggtacagctgccaggtggatgtttactccctcagaccttatttattcattt Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagttATGCCAGAAGCTGGTAGCGAGACCCCTGGGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCACGGGAGggtacagctgccaggtggatgtttactccctcagacccctctccaactctg Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCCTGGGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccttatttattcattt Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCCTGGGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccttatttattcattt Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCCTGGGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccttatttattcattt Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCCTGGGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccttatttattcattt Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCCTGGGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccttatttattcattt Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCCTGGGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccttatttattcattt #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGA-AGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGACAGCCCCAGTA-CCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGagtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGACAGCCCCAGTACCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGagtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGACAGCCCCAGTACCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Spaln_nt2Genome GACCAGTCAGGA-AGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGACAGCCCCAGTA-CCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Pairagon GACCAGTCAGGA-AGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGACAGCCCCAGTA-CCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGACAGCCCCAGTACCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGACAGCCCCAGTACCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from GeneWise GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGACAGCCCCAGTACCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGG-CGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccaggGTGGCAGTGAGTCGAACCCAGGACACTCCTGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACCGCCATT-AAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from CESAR gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccaggGTGGCAGTGAGTCGAACCCAGGACACTCCTGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACCGCCATTAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from Spaln_aa2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACCGCCATTAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from Spaln_nt2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACCGCCATTAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from Pairagon GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACCGCCATTAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACCGCCATTAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACCGCCATTAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACCGCCATTAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAG-GAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacagcctccctctgcctgtctttagaaCATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGCCCAGTGGCTGTGAGCCTGCAACGGGAGCGAAAAAG-GGGCAGTGGAGGGGCCCCCCTACACAGCTACCGGGTCATTGTGCGAACCACGCAGgtaagaaaggatcacaggacaccatagcctatactgaaggtgaatgtccc Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacagcctccctctgcctgtctttagaaCATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGCCCAGTGGCTGTGAGCCTGCAACGGGAGCGAAAAAGGGGCAGTGGAGGGGCCCCCCTACACAGCTACCGGGTCATTGTGCGAACCACGCAGgtaagaaaggatcacaggacaccatagcctatactgaaggtgaaaccagc Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacagcctccctctgcctgtctttagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGCCCAGTGGCTGTGAGCCTGCAACGGGAGCGAAAAAGGGGCAGTGGAGGGGCCCCCCTACACAGCTACCGGGTCATTGTGCGAACCACGCAGgtaagaaaggatcacaggacaccatagcctatactgaaggtgaatgtccc Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacagcctccctctgcctgtctttagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGCCCAGTGGCTGTGAGCCTGCAACGGGAGCGAAAAAGGGGCAGTGGAGGGGCCCCCCTACACAGCTACCGGGTCATTGTGCGAACCACGCAGgtaagaaaggatcacaggacaccatagcctatactgaaggtgaatgtccc Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacagcctccctctgcctgtctttagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGCCCAGTGGCTGTGAGCCTGCAACGGGAGCGAAAAAGGGGCAGTGGAGGGGCCCCCCTACACAGCTACCGGGTCATTGTGCGAACCACGCAGgtaagaaaggatcacaggacaccatagcctatactgaaggtgaatgtccc Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacagcctccctctgcctgtctttagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGCCCAGTGGCTGTGAGCCTGCAACGGGAGCGAAAAAGGGGCAGTGGAGGGGCCCCCCTACACAGCTACCGGGTCATTGTGCGAACCACGCAGgtaagaaaggatcacaggacaccatagcctatactgaaggtgaatgtccc Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacagcctccctctgcctgtctttagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGCCCAGTGGCTGTGAGCCTGCAACGGGAGCGAAAAAGGGGCAGTGGAGGGGCCCCCCTACACAGCTACCGGGTCATTGTGCGAACCACGCAGgtaagaaaggatcacaggacaccatagcctatactgaaggtgaatgtccc Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacagcctccctctgcctgtctttagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGCCCAGTGGCTGTGAGCCTGCAACGGGAGCGAAAAAGGGGCAGTGGAGGGGCCCCCCTACACAGCTACCGGGTCATTGTGCGAACCACGCAGgtaagaaaggatcacaggacaccatagcctatactgaaggtgaatgtccc #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTGCTCCAGCCA-TCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagctATTCAGCTCTTTGTAATCCAGCCCCTCCC-TGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagctATTCAGCTCTTTGTAATCCAGCCCCTCCCTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from Spaln_aa2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagCTATTCAGCTCTTTGTAATCCAGCCCCTCCCTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagCTATTCAGCTCTTTGTAATCCAGCCCCTCCCTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from Pairagon CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagCTATTCAGCTCTTTGTAATCCAGCCCCTCCCTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from Exonerate_protein2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagCTATTCAGCTCTTTGTAATCCAGCCCCTCCCTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from Exonerate_coding2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagCTATTCAGCTCTTTGTAATCCAGCCCCTCCCTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from GeneWise CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagCTATTCAGCTCTTTGTAATCCAGCCCCTCCCTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt #### Slc18a2_ID12940_8 --> 0 - 1 Original Alignment AGTCAGAAGGGGACACCTCTTACGACCTTGCTG-AAGGACCCATACATTCTCATCGCTGCAg cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGCAAGGACC-ATACATTCTGATAGCTGCAggtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from CESAR AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGCAAGGACCATACATTCTGATAGCTGCAggtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from Spaln_aa2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGCAAGGACCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from Spaln_nt2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGCAAGGACCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from Pairagon AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGCAAGGACCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from Exonerate_protein2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGCAAGGACCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from Exonerate_coding2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGCAAGGACCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from GeneWise AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGCAAGGACCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTG-GGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag atgacagagaatattgcacccctcactgtctgcttggcttttccttccagggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGCGGGTTGG-CTGCCTAGGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCaggtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag atgacagagaatattgcacccctcactgtctgcttggcttttccttccagggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGCGGGTTGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCaggtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGCGGGTTGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGCGGGTTGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGCGGGTTGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGCGGGTTGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGCGGGTTGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG atgacagagaatattgcacccctcactgtctgcttggcttttccttccagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGCGGGTTGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtgagtgtcattagcccaaggagcacacctccagattagaaagctgcccc #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAG-GAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGCGAGGAAC-AAGCAGGGACAAGGCTGGTGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGCGAGGAACAAGCAGGGACAAGGCTGGTGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGCGAGGAACAAGCAGGGACAAGGCTGGTGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGCGAGGAACAAGCAGGGACAAGGCTGGTGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGCGAGGAACAAGCAGGGACAAGGCTGGTGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGCGAGGAACAAGCAGGGACAAGGCTGGTGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from Exonerate_coding2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGCGAGGAACAAGCAGGGACAAGGCTGGTGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgaagcttcttttctgtgttacagGTACTGCGGTCAGCTATGGAGCGAGGAACAAGCAGGGACAAGGCTGGTGCCAGTCTTGGCACCTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtaagtgcctctacctaagactgtcagtccagtggacgtcaccctttgcc #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGG-GTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gtcacccagagctgtcgttgctagccagtgccattgacctctgtcctcaggTTTGGGCGCAGAAGGCGTACTGACCT-GAGCTATCTTCTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCtgtaaggcccataattagtgtgaggttgtgaaggctgcatgctagacccag Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gtcacccagagctgtcgttgctagccagtgccattgacctctgtcctcaggTTTGGGCGCAGAAGGCGTACTGACCTGAGCTATCTTCTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCtgtaaggcccataattagtgtgaggttgtgaaggctgcatgctagacccag Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagctgtcgttgctagccagtgccattgacctctgtcctcagGTTTGGGCGCAGAAGGCGTACTGACCTGAGCTATCTTCTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaaggcccataattagtgtgaggttgtgaaggctgcatgctagacccag Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagctgtcgttgctagccagtgccattgacctctgtcctcagGTTTGGGCGCAGAAGGCGTACTGACCTGAGCTATCTTCTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaaggcccataattagtgtgaggttgtgaaggctgcatgctagacccag Alignment from Pairagon GTTTGGGCGCAGAAGG-GTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagctgtcgttgctagccagtgccattgacctctgtcctcagGTTTGGGCGCAGAAGGCGTACTGACCT-GAGCTATCTTCTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaaggcccataattagtgtgaggttgtgaaggctgcatgctagacccag Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagctgtcgttgctagccagtgccattgacctctgtcctcagGTTTGGGCGCAGAAGGCGTACTGACCTGAGCTATCTTCTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaaggcccataattagtgtgaggttgtgaaggctgcatgctagacccag Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagctgtcgttgctagccagtgccattgacctctgtcctcagGTTTGGGCGCAGAAGGCGTACTGACCTGAGCTATCTTCTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaaggcccataattagtgtgaggttgtgaaggctgcatgctagacccag Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagctgtcgttgctagccagtgccattgacctctgtcctcagGTTTGGGCGCAGAAGGCGTACTGACCTGAGCTATCTTCTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTGTTTCCTGCTGGCCTCTGCAGTGGCAGGCATCATGATGAACACAGCCAGTCTCTgtaaggcccataattagtgtgaggttgtgaaggctgcatgctagacccag #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCC-GGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTCGGAGTGTTGG-GGGAGCTGCCTTGTTTGGTTGTCTAGCTGACaggtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTCGGAGTGTTGGGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACaggtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTCGGAGTGTTGGGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTC-CGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTCGGAGTGTTGG-GGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTC-CGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTCGGAGTGTTGG-GGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTCGGAGTGTTGGGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTCGGAGTGTTGGGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTCGGAGTGTTGGGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTT-GGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggttcttccctttgttgttagcagttactttttctctcctgcttctcagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTCGGAGGCC-TATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCaggtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggttcttccctttgttgttagcagttactttttctctcctgcttctcagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTCGGAGGCCTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCaggtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTCGGAGGCCTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTCGGAGGCCTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTCGGAGGCCTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTCGGAGGCCTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTCGGAGGCCTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTCGGAGGCCTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTAC-ACAAGTGAGCTCTACCCTACAGTCCTCag ctctggaggagtgaaaaccatgtcccgtaaaggtcatttttgtttaacagaaATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACCACAAGTG-GCTCTACCCTACAGTCCTCaggtgagtgatgcacctgggtcaggggttcatgcacagaactgaattttcca Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag ctctggaggagtgaaaaccatgtcccgtaaaggtcatttttgtttaacagaaATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACCACAAGTGGCTCTACCCTACAGTCCTCaggtgagtgatgcacctgggtcaggggttcatgcacagaactgaattttcca Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggaggagtgaaaaccatgtcccgtaaaggtcatttttgtttaacagAAATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACCACAAGTGGCTCTACCCTACAGTCCTCAGgtgagtgatgcacctgggtcaggggttcatgcacagaactgaattttcca Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggaggagtgaaaaccatgtcccgtaaaggtcatttttgtttaacagAAATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACCACAAGTGGCTCTACCCTACAGTCCTCAGgtgagtgatgcacctgggtcaggggttcatgcacagaactgaattttcca Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTA-CACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggaggagtgaaaaccatgtcccgtaaaggtcatttttgtttaacagAAATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACCACAAGTG-GCTCTACCCTACAGTCCTCAGgtgagtgatgcacctgggtcaggggttcatgcacagaactgaattttcca Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggaggagtgaaaaccatgtcccgtaaaggtcatttttgtttaacagAAATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACCACAAGTGGCTCTACCCTACAGTCCTCAGgtgagtgatgcacctgggtcaggggttcatgcacagaactgaattttcca Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggaggagtgaaaaccatgtcccgtaaaggtcatttttgtttaacagAAATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACCACAAGTGGCTCTACCCTACAGTCCTCAGgtgagtgatgcacctgggtcaggggttcatgcacagaactgaattttcca Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggaggagtgaaaaccatgtcccgtaaaggtcatttttgtttaacagAAATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACCACAAGTGGCTCTACCCTACAGTCCTCAGgtgagtgatgcacctgggtcaggggttcatgcacagaactgaattttcca #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATA-TGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacaggCAAACAGGTATGGGTATCAGTAACATACTGGGCTCGGG-GGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACtggtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacaggCAAACAGGTATGGGTATCAGTAACATACTGGGCTCGGGGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACtggtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATACTGGGCTCGGGGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATACTGGGCTCGGGGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATA-TGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATACTGGGCTCGGG-GGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATACTGGGCTCGGGGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATACTGGGCTCGGGGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATACTGGGCTCGGGGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTGGGGCAC-CCATTCGACACTGTAAAG cggacttgtttcttagacttggcatcttcctgccctctgcctctgagaaggaGCTGTGGGCCTGGTCCTGGGGCACCCCAT-CGACACTGTAAAGgtgagcgaagcaaacgcactggtagaagagatagtctcatagaacctggg Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG cggacttgtttcttagacttggcatcttcctgccctctgcctctgagaaggaGCTGTGGGCCTGGTCCTGGGGCACCCCATCGACACTGTAAAGgtgagcgaagcaaacgcactggtagaagagatagtctcatagaacctggg Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG cggacttgtttcttagacttggcatcttcctgccctctgcctctgagaagGAGCTGTGGGCCTGGTCCTGGGGCACCCCATCGACACTGTAAAGgtgagcgaagcaaacgcactggtagaagagatagtctcatagaacctggg Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG cggacttgtttcttagacttggcatcttcctgccctctgcctctgagaagGAGCTGTGGGCCTGGTCCTGGGGCACCCCATCGACACTGTAAAGgtgagcgaagcaaacgcactggtagaagagatagtctcatagaacctggg Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG cggacttgtttcttagacttggcatcttcctgccctctgcctctgagaagGAGCTGTGGGCCTGGTCCTGGGGCACCCCATCGACACTGTAAAGgtgagcgaagcaaacgcactggtagaagagatagtctcatagaacctggg Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG cggacttgtttcttagacttggcatcttcctgccctctgcctctgagaagGAGCTGTGGGCCTGGTCCTGGGGCACCCCATCGACACTGTAAAGgtgagcgaagcaaacgcactggtagaagagatagtctcatagaacctggg Alignment from Exonerate_coding2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG cggacttgtttcttagacttggcatcttcctgccctctgcctctgagaagGAGCTGTGGGCCTGGTCCTGGGGCACCCCATCGACACTGTAAAGgtgagcgaagcaaacgcactggtagaagagatagtctcatagaacctggg Alignment from GeneWise --GGAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG cggacttgtttcttagacttggcatcttcctgccctctgcctctgagAAGGAGCTGTGGGCCTGGTCCTGGGGCACCCCATCGACACTGTAAAGgtgagcgaagcaaacgcactggtagaagagatagtctcatagaacctggg #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTC-GGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTCGGAGTGT-CAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCACCCAGCCACACAAACATCTTCATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTCGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCACCCAGCCACACAAACATCTTCATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTCGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCACCCAGCCACACAAACATCTTCATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTCGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCACCCAGCCACACAAACATCTTCATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTG-TTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTCGGAGTGT-CAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCACCCAGCCACACAAACATCTTCATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTCGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCACCCAGCCACACAAACATCTTCATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from Exonerate_coding2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTCGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCACCCAGCCACACAAACATCTTCATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcaccagagctagatttgggacacaaaccactatcccctgttcttacagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTAGTGTAGCCCTGGTCAACTCTGTCCTGTTTCGGAGTGTCAGCAACACGCTCCTGGCACTAACAGCCACGTCTCATCAGGAACGACAGGCCCAGCCACCCAGCCACACAAACATCTTCATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtgagcgtatcattgttgctgggtagctggcatactttcagctcattgaa #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCG-GTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCCGTTTTTC-TGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCCGTTTTTCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCCGTTTTTCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCCGTTTTTCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCCGTTTTTCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCCGTTTTTCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCCGTTTTTCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCCGTTTTTCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga #### Slc3a2_ID2302_7 --> 1 - 0 Original Alignment gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAAT-TCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT gaactctgctctcttattcttcactttgctctctccctgtctgtcggcaggCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAACATACTTGAGTCCACCAGTGACCTGCTGTTGACCAGCTCCTACCTTTCAAATCTCCACTTACA-TGGGGAGCGTACTGAATCCCTAGTAACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtgggtggcatgatggtaggtctaggtaaaggtgggaagtggtaggtgtg Alignment from CESAR gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT gaactctgctctcttattcttcactttgctctctccctgtctgtcggcaggCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAACATACTTGAGTCCACCAGTGACCTGCTGTTGACCAGCTCCTACCTTTCAAATCTCCACTTACATGGGGAGCGTACTGAATCCCTAGTAACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtgggtggcatgatggtaggtctaggtaaaggtgggaagtggtaggtgtg Alignment from Spaln_aa2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT gaactctgctctcttattcttcactttgctctctccctgtctgtcggcagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAACATACTTGAGTCCACCAGTGACCTGCTGTTGACCAGCTCCTACCTTTCAAATCTCCACTTACATGGGGAGCGTACTGAATCCCTAGTAACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtgggtggcatgatggtaggtctaggtaaaggtgggaagtggtaggtgtg Alignment from Spaln_nt2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT gaactctgctctcttattcttcactttgctctctccctgtctgtcggcagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAACATACTTGAGTCCACCAGTGACCTGCTGTTGACCAGCTCCTACCTTTCAAATCTCCACTTACATGGGGAGCGTACTGAATCCCTAGTAACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtgggtggcatgatggtaggtctaggtaaaggtgggaagtggtaggtgtg Alignment from Pairagon GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAAT-TCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT gaactctgctctcttattcttcactttgctctctccctgtctgtcggcagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAACATACTTGAGTCCACCAGTGACCTGCTGTTGACCAGCTCCTACCTTTCAAATCTCCACTTACA-TGGGGAGCGTACTGAATCCCTAGTAACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtgggtggcatgatggtaggtctaggtaaaggtgggaagtggtaggtgtg Alignment from Exonerate_protein2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT gaactctgctctcttattcttcactttgctctctccctgtctgtcggcagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAACATACTTGAGTCCACCAGTGACCTGCTGTTGACCAGCTCCTACCTTTCAAATCTCCACTTACATGGGGAGCGTACTGAATCCCTAGTAACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtgggtggcatgatggtaggtctaggtaaaggtgggaagtggtaggtgtg Alignment from Exonerate_coding2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT gaactctgctctcttattcttcactttgctctctccctgtctgtcggcagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAACATACTTGAGTCCACCAGTGACCTGCTGTTGACCAGCTCCTACCTTTCAAATCTCCACTTACATGGGGAGCGTACTGAATCCCTAGTAACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtgggtggcatgatggtaggtctaggtaaaggtgggaagtggtaggtgtg Alignment from GeneWise GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT gaactctgctctcttattcttcactttgctctctccctgtctgtcggcagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAACATACTTGAGTCCACCAGTGACCTGCTGTTGACCAGCTCCTACCTTTCAAATCTCCACTTACATGGGGAGCGTACTGAATCCCTAGTAACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtgggtggcatgatggtaggtctaggtaaaggtgggaagtggtaggtgtg #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCC-GGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagcCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCT-CTCTCCCTACAGAAAGCTGCGCAGGatgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from CESAR cCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagcCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGatgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_aa2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_nt2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Pairagon CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_protein2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_coding2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTG-CAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCacgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCAA-AAAGGATCAGTATTTCCTAGATAAGAAGATGGTCacgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTG-CAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGG-AGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGCAGTGGAG-GAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGCAGTGGAGGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGCAGTGGAGGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGCAGTGGAGGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGG-AGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGCAGTGGAG-GAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGCAGTGGAGGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGCAGTGGAGGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGCAGTGGAGGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTC-ATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCCATTCCGA-AACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAggtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCCATTCCGAAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAggtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCCATTCCGAAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCCATTCCGAAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCCATTCCGAAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCCATTCCGAAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCCATTCCGAAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCCATTCCGAAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGA-GAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTCGAAGTAT-GCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAggtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTCGAAGTATGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAggtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTCGAAGTATGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCC---AGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTCGAAGTATGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCG-AGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTCGAAGTAT-GCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTCGAAGTATGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTCGAAGTATGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAG---CGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTCGAAGTATGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt #### Snx32_ID1069_9 --> 1 - 0 Original Alignment gAGCTTCCTGAAGCTG-GCAGAGCTCTTTGAACGGCTGAGA atgagagggaagccttgagctgccccggttttggtcattgtgtcttgcaggAGCTTCTTGAAGCTGCGCAGAGC-CTTTGAACGGCTGAGAgtaaggactaccttcgacacttggtcttctctagcagtgccaaggtgtac Alignment from CESAR gAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaagccttgagctgccccggttttggtcattgtgtcttgcaggAGCTTCTTGAAGCTGCGCAGAGCCTTTGAACGGCTGAGAgtaaggactaccttcgacacttggtcttctctagcagtgccaaggtgtac Alignment from Spaln_aa2Genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaagccttgagctgccccggttttggtcattgtgtcttgcagGAGCTTCTTGAAGCTGCGCAGAGCCTTTGAACGGCTGAGAgtaaggactaccttcgacacttggtcttctctagcagtgccaaggtgtac Alignment from Spaln_nt2Genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaagccttgagctgccccggttttggtcattgtgtcttgcagGAGCTTCTTGAAGCTGCGCAGAGCCTTTGAACGGCTGAGAgtaaggactaccttcgacacttggtcttctctagcagtgccaaggtgtac Alignment from Pairagon GAGCTTCCTGAAGCTG-GCAGAGCTCTTTGAACGGCTGAGA atgagagggaagccttgagctgccccggttttggtcattgtgtcttgcagGAGCTTCTTGAAGCTGCGCAGAGC-CTTTGAACGGCTGAGAgtaaggactaccttcgacacttggtcttctctagcagtgccaaggtgtac Alignment from Exonerate_protein2genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaagccttgagctgccccggttttggtcattgtgtcttgcagGAGCTTCTTGAAGCTGCGCAGAGCCTTTGAACGGCTGAGAgtaaggactaccttcgacacttggtcttctctagcagtgccaaggtgtac Alignment from Exonerate_coding2genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaagccttgagctgccccggttttggtcattgtgtcttgcagGAGCTTCTTGAAGCTGCGCAGAGCCTTTGAACGGCTGAGAgtaaggactaccttcgacacttggtcttctctagcagtgccaaggtgtac Alignment from GeneWise atgagagggaagccttgagctgccccggttttggtcattgtgtcttgcaggagcttcttgaagctgcgcagagcctttgaacggctgagagtaaggactaccttcgacacttggtcttctctagcagtgccaaggtgtac #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGC-ATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCCATTG-CAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCCATTGCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCCATTGCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCCATTGCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCCATTGCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCCATTGCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCCATTGCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCCATTGCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAG-ATGAAGCAGGAGCTAGAAgc aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGCATGA-ACAAGAGCTAGAAgcgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGCATGAACAAGAGCTAGAAgcgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGCATGAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGCATGAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from Pairagon ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAG-ATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGCATGAA-CAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGCATGAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGCATGAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatggctgtgacagccctttggttcctccaccctctttccacagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGCATGAACAAGAGCTAGAAGCgtaagtatttcccccacccctgcccattcctccagggtttcctaacaaag #### Snx32_ID1075_3 --> 0 - 0 Original Alignment AGTGGCCTCCCT-CACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCCACT-TGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from CESAR AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAG------TACGCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCCACTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from Spaln_aa2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCCACTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from Spaln_nt2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACG------CCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCCACTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from Pairagon AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACG------CCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCCACTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from Exonerate_protein2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCCACTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from Exonerate_coding2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCCACTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from GeneWise AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTAC------GCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCCACTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGAT-GGGCTGGCCTTTAATGCCATTGTGCACAAACACcg ctctatccagtccttatatgacagagcacccatatttcttctgtttccagaTACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATCGGGCTGGCCT-TAATGCCATTGTGCACAAACACcggtaggtaggtggggttagtgacccaggtacacatagatgggcagggtgag Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg ctctatccagtccttatatgacagagcacccatatttcttctgtttccagaTACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATCGGGCTGGCCTTAATGCCATTGTGCACAAACACcggtaggtaggtggggttagtgacccaggtacacatagatgggcagggtgag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatgacagagcacccatatttcttctgtttccagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATCGGGCTGGCCTTAATGCCATTGTGCACAAACACCGgtaggtaggtggggttagtgacccaggtacacatagatgggcagggtgag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatgacagagcacccatatttcttctgtttccagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATCGGGCTGGCCTTAATGCCATTGTGCACAAACACCGgtaggtaggtggggttagtgacccaggtacacatagatgggcagggtgag Alignment from Pairagon ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGAT-GGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatgacagagcacccatatttcttctgtttccagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATCGGGCTGGCC-TTAATGCCATTGTGCACAAACACCGgtaggtaggtggggttagtgacccaggtacacatagatgggcagggtgag Alignment from Exonerate_protein2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatgacagagcacccatatttcttctgtttccagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATCGGGCTGGCCTTAATGCCATTGTGCACAAACACCGgtaggtaggtggggttagtgacccaggtacacatagatgggcagggtgag Alignment from Exonerate_coding2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatgacagagcacccatatttcttctgtttccagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATCGGGCTGGCCTTAATGCCATTGTGCACAAACACCGgtaggtaggtggggttagtgacccaggtacacatagatgggcagggtgag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatgacagagcacccatatttcttctgtttccagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATCGGGCTGGCCTTAATGCCATTGTGCACAAACACCGgtaggtaggtggggttagtgacccaggtacacatagatgggcagggtgag #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTA-GCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTACTCAGCCAGCA-TCAAGATATGATTGACCATGAACATCCAGAGaggtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTACTCAGCCAGCATCAAGATATGATTGACCATGAACATCCAGAGaggtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTACTCAGCCAGCATCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTACTCAGCCAGCATCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAG-CAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTACTCAGCCAGCA-TCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTACTCAGCCAGCATCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTACTCAGCCAGCATCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTACTCAGCCAGCATCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment cACAAGACTAACAATACGCCAA-GCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT actgagcagttaggtgacacatagcaaggatgcttttccctttaattaagcACAAGACTAACAATACGGCAACGCCCAGG-GGACAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCACGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAACAGTGGATACAGGAGCATGAGGTTGTGGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACCgtaaggcctacagtctagcaaaagggatcaagacctgtggggtgacaaag Alignment from CESAR cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT actgagcagttaggtgacacatagcaaggatgcttttccctttaattaagcACAAGACTAACAATACGGCAACGCCCAGGGGACAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCACGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAACAGTGGATACAGGAGCATGAGGTTGTGGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACCgtaaggcctacagtctagcaaaagggatcaagacctgtggggtgacaaag Alignment from Spaln_aa2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT actgagcagttaggtgacacatagcaaggatgcttttccctttaattaagCACAAGACTAACAATACGGCAACGCCCAGGGGACAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCACGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAACAGTGGATACAGGAGCATGAGGTTGTGGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACCgtaaggcctacagtctagcaaaagggatcaagacctgtggggtgacaaag Alignment from Spaln_nt2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT actgagcagttaggtgacacatagcaaggatgcttttccctttaattaagCACAAGACTAACAATACGGCAACGCCCAGGGGACAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCACGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAACAGTGGATACAGGAGCATGAGGTTGTGGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACCgtaaggcctacagtctagcaaaagggatcaagacctgtggggtgacaaag Alignment from Pairagon CACAAGACTAACAATACGCCAA-GCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT actgagcagttaggtgacacatagcaaggatgcttttccctttaattaagCACAAGACTAACAATACGGCAACGCCCAGG-GGACAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCACGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAACAGTGGATACAGGAGCATGAGGTTGTGGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACCgtaaggcctacagtctagcaaaagggatcaagacctgtggggtgacaaag Alignment from Exonerate_protein2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT actgagcagttaggtgacacatagcaaggatgcttttccctttaattaagCACAAGACTAACAATACGGCAACGCCCAGGGGACAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCACGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAACAGTGGATACAGGAGCATGAGGTTGTGGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACCgtaaggcctacagtctagcaaaagggatcaagacctgtggggtgacaaag Alignment from Exonerate_coding2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT actgagcagttaggtgacacatagcaaggatgcttttccctttaattaagCACAAGACTAACAATACGGCAACGCCCAGGGGACAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCACGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAACAGTGGATACAGGAGCATGAGGTTGTGGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACCgtaaggcctacagtctagcaaaagggatcaagacctgtggggtgacaaag Alignment from GeneWise CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT actgagcagttaggtgacacatagcaaggatgcttttccctttaattaagCACAAGACTAACAATACGGCAACGCCCAGGGGACAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCACGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAACAGTGGATACAGGAGCATGAGGTTGTGGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACCgtaaggcctacagtctagcaaaagggatcaagacctgtggggtgacaaag #### Sptbn2_ID636_31 --> 1 - 0 Original Alignment gACTCAGTCAAAATTG-CCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccataggACTCAGTCAAAATTGCCCACCAT-AACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from CESAR gACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccataggACTCAGTCAAAATTGCCCACCATAACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from Spaln_aa2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCCACCATAACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from Spaln_nt2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCCACCATAACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from Pairagon GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCCACCATAACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from Exonerate_protein2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCCACCATAACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from Exonerate_coding2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCCACCATAACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from GeneWise GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCCACCATAACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc #### Sptbn2_ID639_34 --> 1 - 2 Original Alignment gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGC-CTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg cactttgtaggaacttctcctttgagaaacctttatccgtctgcccccaggTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCATAC------GAAGTGCCTGTCAGCCCTGGCCAGGG-CCAAGGTAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgggtgagctttccaagctggattaagcacctgggctcctcttgggttggggg Alignment from CESAR gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg cactttgtaggaacttctcctttgagaaacctttatccgtctgcccccaggTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCATAC------GAAGTGCCTGTCAGCCCTGGCCAGGGCCAAGGTAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgggtgagctttccaagctggattaagcacctgggctcctcttgggttggggg Alignment from Spaln_aa2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtaggaacttctcctttgagaaacctttatccgtctgcccccagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCATAC------GAAGTGCCTGTCAGCCCTGGCCAGGGCCAAGGTAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagctttccaagctggattaagcacctgggctcctcttgggttggggg Alignment from Spaln_nt2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtaggaacttctcctttgagaaacctttatccgtctgcccccagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCATAC------GAAGTGCCTGTCAGCCCTGGCCAGGGCCAAGGTAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagctttccaagctggattaagcacctgggctcctcttgggttggggg Alignment from Pairagon GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAG-CCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtaggaacttctcctttgagaaacctttatccgtctgcccccagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCATAC------GAAGTGCCTGTCAGCCCTGGCCAGGG-CCAAGGTAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagctttccaagctggattaagcacctgggctcctcttgggttggggg Alignment from Exonerate_protein2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtaggaacttctcctttgagaaacctttatccgtctgcccccagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCATAC------GAAGTGCCTGTCAGCCCTGGCCAGGGCCAAGGTAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagctttccaagctggattaagcacctgggctcctcttgggttggggg Alignment from Exonerate_coding2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtaggaacttctcctttgagaaacctttatccgtctgcccccagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCATAC------GAAGTGCCTGTCAGCCCTGGCCAGGGCCAAGGTAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagctttccaagctggattaagcacctgggctcctcttgggttggggg Alignment from GeneWise GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactttgtaggaacttctcctttgagaaacctttatccgtctgcccccagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCATAC------GAAGTGCCTGTCAGCCCTGGCCAGGGCCAAGGTAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagctttccaagctggattaagcacctgggctcctcttgggttggggg #### Sptbn2_ID640_35 --> 1 - 0 Original Alignment cTTACAGGATGGCAAA-GAATACCTATTCCAGGCCAAGGACGAG acagcacaaaagacaggcttgtagctctctttctgttacttatgtttcagcTTACAGGATGGTAAGCGAATACCTAT-CCAGGCCAGAGACGAGgtaggtccccccctgcccaccgtggtctctcttgctaccagcactgggtt Alignment from CESAR cTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acagcacaaaagacaggcttgtagctctctttctgttacttatgtttcagcTTACAGGATGGTAAGCGAATACCTATCCAGGCCAGAGACGAGgtaggtccccccctgcccaccgtggtctctcttgctaccagcactgggtt Alignment from Spaln_aa2Genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acagcacaaaagacaggcttgtagctctctttctgttacttatgtttcagCTTACAGGATGGTAAGCGAATACCTATCCAGGCCAGAGACGAGgtaggtccccccctgcccaccgtggtctctcttgctaccagcactgggtt Alignment from Spaln_nt2Genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acagcacaaaagacaggcttgtagctctctttctgttacttatgtttcagCTTACAGGATGGTAAGCGAATACCTATCCAGGCCAGAGACGAGgtaggtccccccctgcccaccgtggtctctcttgctaccagcactgggtt Alignment from Pairagon CTTACAGGATGGCAAA-GAATACCTATTCCAGGCCAAGGACGAG acagcacaaaagacaggcttgtagctctctttctgttacttatgtttcagCTTACAGGATGGTAAGCGAATACCTA-TCCAGGCCAGAGACGAGgtaggtccccccctgcccaccgtggtctctcttgctaccagcactgggtt Alignment from Exonerate_protein2genome acagcacaaaagacaggcttgtagctctctttctgttacttatgtttcagcttacaggatggtaagcgaatacctatccaggccagagacgaggtaggtccccccctgcccaccgtggtctctcttgctaccagcactgggtt Alignment from Exonerate_coding2genome acagcacaaaagacaggcttgtagctctctttctgttacttatgtttcagcttacaggatggtaagcgaatacctatccaggccagagacgaggtaggtccccccctgcccaccgtggtctctcttgctaccagcactgggtt Alignment from GeneWise CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acagcacaaaagacaggcttgtagctctctttctgttacttatgtttcagCTTACAGGATGGTAAGCGAATACCTATCCAGGCCAGAGACGAGgtaggtccccccctgcccaccgtggtctctcttgctaccagcactgggtt #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAAT-GTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagaGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATCGTACGTGTCT-GGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAAT-GTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagaGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATCGTACGTGTCT-GGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATCGTACGTGTCTGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATCGTACGTGTCTGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAAT-GTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATCGTACGTGTCT-GGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATCGTACGTGTCTGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATCGTACGTGTCTGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATCGTACGTGTCTGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCT-CTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCCTCCAGCAAT-CCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttatgttctcttgactgtctcatagGGCTCTGAGTGGAA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCCTCCAGCAATCCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttatgcagtcctatttcatcaccagGGCTCTGAGTGGAA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCCTCCAGCAATCCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttatgttctcttgactgtctcatagGGCTCTGAGTGGAA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACC------------------------------------TCTACTTGGGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCCTCCAGCAATCCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGGTACCGGTCCTTTATGTTCTCTTGACTGTCTCATAGGGCTCTGAGTGGAA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCT-CTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCCTCCAGCAAT-CCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttatgttctcttgactgtctcatagGGCTCTGAGTGGAA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCCTCCAGCAATCCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttatgttctcttgactgtctcatagGGCTCTGAGTGGAA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCCTCCAGCAATCCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttatgttctcttgactgtctcatagGGCTCTGAGTGGAA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCCTCCAGCAATCCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttatgttctcttgactgtctcatagGGCTCTGAGTGGAA #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAAT-GAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca ggagggaaccaagtatgatggagtgactatgcatgtgatttttttctcaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCAGGAGAAACTTAACTCTGACCAGGGCTGCCTCAATCGAGTGGA-GGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAcagtgagtactggggcaggttggagcatggggacaaggaggaagaggaggtg Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca ggagggaaccaagtatgatggagtgactatgcatgtgatttttttctcaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCAGGAGAAACTTAACTCTGACCAGGGCTGCCTCAATCGAGTGGAGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAcagtgagtactggggcaggttggagcatggggacaaggaggaagaggaggtg Alignment from Spaln_aa2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgactatgcatgtgatttttttctcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCAGGAGAAACTTAACTCTGACCAGGGCTGCCTCAATCGAGTGGAGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtgagtactggggcaggttggagcatggggacaaggaggaagaggaggtg Alignment from Spaln_nt2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgactatgcatgtgatttttttctcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCAGGAGAAACTTAACTCTGACCAGGGCTGCCTCAATCGAGTGGAGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtgagtactggggcaggttggagcatggggacaaggaggaagaggaggtg Alignment from Pairagon GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAAT-GAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgactatgcatgtgatttttttctcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCAGGAGAAACTTAACTCTGACCAGGGCTGCCTCAATCGAGTGGA-GGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtgagtactggggcaggttggagcatggggacaaggaggaagaggaggtg Alignment from Exonerate_protein2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgactatgcatgtgatttttttctcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCAGGAGAAACTTAACTCTGACCAGGGCTGCCTCAATCGAGTGGAGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtgagtactggggcaggttggagcatggggacaaggaggaagaggaggtg Alignment from Exonerate_coding2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgactatgcatgtgatttttttctcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCAGGAGAAACTTAACTCTGACCAGGGCTGCCTCAATCGAGTGGAGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtgagtactggggcaggttggagcatggggacaaggaggaagaggaggtg Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgactatgcatgtgatttttttctcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCAGGAGAAACTTAACTCTGACCAGGGCTGCCTCAATCGAGTGGAGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtgagtactggggcaggttggagcatggggacaaggaggaagaggaggtg #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCTGGT-GGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagaGGCTTAAGTGTGACATCTGGTCGGTCAAAGCC-AATCTTCAAGCCTGTCTCTATCCAGACCATGtggtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagaGGCTTAAGTGTGACATCTGGTCGGTCAAAGCCAATCTTCAAGCCTGTCTCTATCCAGACCATGtggtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGACATCTGGTCGGTCAAAGCCAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGACATCTGGTCGGTCAAAGCCAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from Pairagon GGGCTTCAGTGTGACATCTGGT-GGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGACATCTGGTCGGTCAAAGCC-AATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGACATCTGGTCGGTCAAAGCCAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGACATCTGGTCGGTCAAAGCCAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG gcaaactaatagcctggtattgggttcctgattaaccttctctcttaaagAGGCTTAAGTGTGACATCTGGTCGGTCAAAGCCAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctataagcttcgcccacacacttagttggcagcct #### Ssh3_ID451_5 --> 1 - 2 Original Alignment tTCCCAC---------AGCTGCACCCTGGGCCTGGTCTTGCCC-CTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gccaaggctgtaatgtgctgggaaacaaacccatttaccctcttcttcagtTGCCACAGCTGCACCAGCTGCACCCTGGGTCTGGTCTTGCCCCCTCTGGA-TGATACCCAAGTGTACCTGGATGGAGATgggttggtggctttctgtaggaacaggaggggatgcacaagaatgggtagat Alignment from CESAR tTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg aagggtcaggccaaggctgtaatgtgctgggaaattaccctcttcttcagttgccacagcTGCACCAGCTGCACCCTGGGTCTGGTCTTGCCCCCTCTGGATGATACCCAAGTGTACCTGGATGGAGATgggttggtggctttctgtaggaacaggaggggatgcacaagaatgggtagat Alignment from Spaln_aa2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctgggaaacaaacccatttaccctcttcttcagttgccacagCTGCACCAGCTGCACCCTGGGTCTGGTCTTGCCCCCTCTGGATGATACCCAAGTGTACCTGGATGGAGATGGgttggtggctttctgtaggaacaggaggggatgcacaagaatgggtagat Alignment from Spaln_nt2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctgggaaacaaacccatttaccctcttcttcagttgccacagCTGCACCAGCTGCACCCTGGGTCTGGTCTTGCCCCCTCTGGATGATACCCAAGTGTACCTGGATGGAGATGGgttggtggctttctgtaggaacaggaggggatgcacaagaatgggtagat Alignment from Pairagon TTCCCA---------CAGCTGCACCCTGGGCCTGGTCTTG-CCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctgggaaacaaacccatttaccctcttcttcagTTGCCACAGCTGCACCAGCTGCACCCTGGGTCTGGTCTTGCCCCCTCTGGA-TGATACCCAAGTGTACCTGGATGGAGATGGgttggtggctttctgtaggaacaggaggggatgcacaagaatgggtagat Alignment from Exonerate_protein2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctgggaaacaaacccatttaccctcttcttcagttgccacagCTGCACCAGCTGCACCCTGGGTCTGGTCTTGCCCCCTCTGGATGATACCCAAGTGTACCTGGATGGAGATGGgttggtggctttctgtaggaacaggaggggatgcacaagaatgggtagat Alignment from Exonerate_coding2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctgggaaacaaacccatttaccctcttcttcagttgccacagCTGCACCAGCTGCACCCTGGGTCTGGTCTTGCCCCCTCTGGATGATACCCAAGTGTACCTGGATGGAGATGGgttggtggctttctgtaggaacaggaggggatgcacaagaatgggtagat Alignment from GeneWise TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctgggaaacaaacccatttaccctcttcttcagttgccacagCTGCACCAGCTGCACCCTGGGTCTGGTCTTGCCCCCTCTGGATGATACCCAAGTGTACCTGGATGGAGATGGgttggtggctttctgtaggaacaggaggggatgcacaagaatgggtagat #### Stip1_ID1988_13 --> 0 - 2 Original Alignment GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAG-CAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCCAGA-GCAAAAGGACCCCCAGGCTCTGAGCgagtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from CESAR GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCCAGAGCAAAAGGACCCCCAGGCTCTGAGCgagtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Spaln_aa2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCCAGAGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Spaln_nt2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCCAGAGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Pairagon GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCCAGAGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Exonerate_protein2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCCAGAGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Exonerate_coding2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCCAGAGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from GeneWise GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCCAGAGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAAC-GGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCaggtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCaggtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACACAGCAAACGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct #### Sufu_ID9897_5 --> 0 - 2 Original Alignment ATTGTTGGTGTCTGCACTGAG-GAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGCGAGTTAC-TTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGGCAGTACCCatgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from CESAR ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGCGAGTTACTTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGGCAGTACCCatgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from Spaln_aa2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGCGAGTTACTTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from Spaln_nt2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGCGAGTTACTTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from Pairagon ATTGTTGGTGTCTGCACTGAG-GAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGCGAGTTAC-TTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from Exonerate_protein2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGCGAGTTACTTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from Exonerate_coding2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGCGAGTTACTTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg Alignment from GeneWise ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcatagctcattcgagggaaggacacatggccttctgcttcaccctagATTGTTGGCGTCTGCACTGAGCGAGTTACTTCAGCACAACAGTGGAATGGACAGGGCATCCTGGAACTACTACGGGCAGTACCCATgtgagttcaagcccccgtaaagtggaggcctggaccctttgtctgtgcgg #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGC-CCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt ggggtgtggggcacctccaaccatcttgtgacttcctctctctcttccagATGGAGCGTAGCCCCCAACA-CTCCTGGCTCTTCCACTGCCGTATTGTCtgtaagagatacctgatactcattgaagctgtgcgtgtaatttgtttgagg Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt ggggtgtggggcacctccaaccatcttgtgacttcctctctctcttccagATGGAGCGTAGCCCCCAACACTCCTGGCTCTTCCACTGCCGTATTGTCtgtaagagatacctgatactcattgaagctgtgcgtgtaatttgtttgagg Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcacctccaaccatcttgtgacttcctctctctcttccagATGGAGCGTAGCCCCCAACACTCCTGGCTCTTCCACTGCCGTATTGTCTgtaagagatacctgatactcattgaagctgtgcgtgtaatttgtttgagg Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcacctccaaccatcttgtgacttcctctctctcttccagATGGAGCGTAGCCCCCAACACTCCTGGCTCTTCCACTGCCGTATTGTCTgtaagagatacctgatactcattgaagctgtgcgtgtaatttgtttgagg Alignment from Pairagon ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcacctccaaccatcttgtgacttcctctctctcttccagATGGAGCGTAGCCCCCAACACTCCTGGCTCTTCCACTGCCGTATTGTCTgtaagagatacctgatactcattgaagctgtgcgtgtaatttgtttgagg Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcacctccaaccatcttgtgacttcctctctctcttccagATGGAGCGTAGCCCCCAACACTCCTGGCTCTTCCACTGCCGTATTGTCTgtaagagatacctgatactcattgaagctgtgcgtgtaatttgtttgagg Alignment from Exonerate_coding2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcacctccaaccatcttgtgacttcctctctctcttccagATGGAGCGTAGCCCCCAACACTCCTGGCTCTTCCACTGCCGTATTGTCTgtaagagatacctgatactcattgaagctgtgcgtgtaatttgtttgagg Alignment from GeneWise ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcacctccaaccatcttgtgacttcctctctctcttccagATGGAGCGTAGCCCCCAACACTCCTGGCTCTTCCACTGCCGTATTGTCTgtaagagatacctgatactcattgaagctgtgcgtgtaatttgtttgagg #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTG-GACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagctCTCATGTTTCTCCTGGGCATCCTTCGACTTCC-CTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagctCTCATGTTTCTCCTGGGCATCCTTCGACTTCCCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTCGACTTCCCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTCGACTTCCCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCC-TGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTCGACTTCC-CTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTCGACTTCCCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTCGACTTCCCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG gtgatcgtcaggcctctgcagaccttcgtggtccctctgttttctttcagCTCTCATGTTTCTCCTGGGCATCCTTCGACTTCCCTTTGTCAGCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactgctggcttggggaaagaatcgtcctgtgtgtgctatgagcaatcc #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATG-GGTATGCCTCTGCCTCCACCTTTTg aggagattgatccattctcaatttgcattttctaatctgttgtgttccagctGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGC-TCTGCCTCCACCTTTTggtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg aggagattgatccattctcaatttgcattttctaatctgttgtgttccagctGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCTCTGCCTCCACCTTTTggtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATG-GGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATG-CTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCT-GCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagccTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTCGCCATGC-TCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgggcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagccTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTCGCCATGCTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgggcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTCGCCATGCTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGGgcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTCGCCATGCTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGGgcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCT-GCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTCGCCATGC-TCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGGgcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTCGCCATGCTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGGgcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTCGCCATGCTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGGgcaagtatgtcatattcaatagcactccagaaaggtcttatgtccttttg Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGGGCCC gtggaaagctgaggcccaggtagcttagtgaactcctgttctttctcaagCCTTCCCCCCAATGCCTGTGCCCCCTGCAGGCTTTGCTGGTCTAACGCCAGAGGAGTTGCGAGCACTAGAGGGCCACGAGCGGCAGCACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTCGCCATGCTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGGGCAAgtatgtcatattcaatagcactccagaaaggtcttatgtccttttg #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCATTCC-TTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCCTTGACAT-TTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAggtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from CESAR GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCCTTGACATTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAggtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from Spaln_aa2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCCTTGACATTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from Spaln_nt2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCCTTGACATTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from Pairagon GGACCAATTCATT-CCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCCTTGACA-TTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from Exonerate_protein2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCCTTGACATTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from Exonerate_coding2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCCTTGACATTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCCTTGACATTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGT-CAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCCAGAAGAACA-CCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCCAGAAGAACACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCCAGAAGAACACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTC-AGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCCAGAAGAAC-ACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGT-CAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCCAGAAGAAC-ACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCCAGAAGAACACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCCAGAAGAACACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG gagagcaagagagcagaggaacccctgagtattaacattgtttgttttagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTACGTGCCCGGTGCTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCCAGAAGAACACCCTGGCACATATCAGgtaagtaagttggcaggctctcttcaagccttactgagagcacctcacca #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACC-TTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCCTTGTCTG-GCTCATCTTCCTCCTGGGTCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCCTTGTCTGGCTCATCTTCCTCCTGGGTCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCCTTGTCTGGCTCATCTTCCTCCTGGGTCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCCTTGTCTGGCTCATCTTCCTCCTGGGTCT------CTACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCCA------TTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGA-CCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCCTTGTCTG-GCTCATCTTCCTCCTGGGTCT------CTACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCCA------TTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCCTTGTCTGGCTCATCTTCCTCCTGGGTCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCCTTGTCTGGCTCATCTTCCTCCTGGGTCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG atgggcagtctttgtgggcctagggtgcttgttttggtgtaacattctagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACCCTTGTCTGGCTCATCTTCCTCCTGGGTCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCTACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaggtcatttacagaggatggctgacttcctcactggggttgttctagt #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCA-CCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATgtgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctt Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTC-ACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATgtgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctt Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctt Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctt Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCA-CCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctt Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctt Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctt Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCTGTCACCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctt #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTC-CCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCCT-AGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGctgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCCTAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGctgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCCTAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCCTAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCCTAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTGTGAGTCCTACAACCTTTCCTATGCAGCCAGGGCACCTGACCAACTGTGT Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCCTAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCCTAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCCTAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGT-GAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACAgtgactttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTCGAGCAGATCG-ACAGAAGATCCGAAAGATCACAGACtggtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from CESAR CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGT-GAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACAgtaagattacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTCGAGCAGATC-GACAGAAGATCCGAAAGATCACAGACtggtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from Spaln_aa2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgactttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTCGAGCAGATCGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from Spaln_nt2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgactttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTCGAGCAGATCGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from Pairagon CCAGTGAC-----------------------------------------GGGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGT-GAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAGTGACTTTACATGGAAGACATGTCTCATTTTCTTCTCTAAGGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTCGAGCAGATC-GACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from Exonerate_protein2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgactttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTCGAGCAGATCGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from Exonerate_coding2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgactttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTCGAGCAGATCGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from GeneWise CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgactttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTCGAGCAGATCGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTG-GAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgtgaggagagttgggaggaggctgcacagatcctctgttcttccacagtTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCTGCGGCCTTGCGAGCGCC-GCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGGGAGACTGAGGGGCAGCTTGAGGACCCAGTGACAgtaagattacatggaagacgagtaattttctcctatattagGGTGAGCCT Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgtgaggagagttgggaggaggctgcacagatcctctgttcttccacagtTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCTGCGGCCTTGCGAGCGCCGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGGGAGACTGAGGGGCAGCTTGAGGACCCAGTGACAgtaagattacatggaagacatgtctcattttcttctctaagGGTGAGCCT Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgtgaggagagttgggaggaggctgcacagatcctctgttcttccacagTTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCTGCGGCCTTGCGAGCGCCGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGGGAGACTGAGGGGCAGCTTGAGGACCCAGTGACAgtaagattacatggaagacgagtaattttctcctatattagGGTGAGCCT Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgtgaggagagttgggaggaggctgcacagatcctctgttcttccacagTTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCTGCGGCCTTGCGAGCGCCGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGGGAGACTGAGGGGCAGCTTGAGGACCCAGTGACAgtaagattacatggaagacgagtaattttctcctatattagGGTGAGCCT Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTG-GAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGAC-----------------------------------------GGGTGAGCCT ctgtgaggagagttgggaggaggctgcacagatcctctgttcttccacagTTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCTGCGGCCTTGCGAGCGCC-GCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGGGAGACTGAGGGGCAGCTTGAGGACCCAGTGACAGTAAGATTACATGGAAGACGAGTAATTTTCTCCTATATTAGGGTGAGCCT Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgtgaggagagttgggaggaggctgcacagatcctctgttcttccacagTTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCTGCGGCCTTGCGAGCGCCGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGGGAGACTGAGGGGCAGCTTGAGGACCCAGTGACAgtaagattacatggaagacgagtaattttctcctatattagGGTGAGCCT Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgtgaggagagttgggaggaggctgcacagatcctctgttcttccacagTTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCTGCGGCCTTGCGAGCGCCGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGGGAGACTGAGGGGCAGCTTGAGGACCCAGTGACAgtaagattacatggaagacgagtaattttctcctatattagGGTGAGCCT Alignment from GeneWise TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgtgaggagagttgggaggaggctgcacagatcctctgttcttccacagTTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCTGCGGCCTTGCGAGCGCCGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGGGAGACTGAGGGGCAGCTTGAGGACCCAGTGACAgtaagattacatggaagacgagtaattttctcctatattagGGTGAGCCT #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAA-GGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAACGGACCCT-CTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCaagtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAACGGACCCTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCaagtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAACGGACCCTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAACGGACCCTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAACGGACCCTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAACGGACCCTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAACGGACCCTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATACTGAACGGACCCTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTG-CAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCCAGAGTG-GGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAaggtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCCAGAGTGGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAaggtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCCAGAGTGGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCCAGAGTGGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from Pairagon ATGACCCTGTTG-CAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCCAGAGTG-GGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCCAGAGTGGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCCAGAGTGGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCCAGAGTGGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACC-TCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagggTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCCTCGGAGC-AGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagggTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCCTCGGAGCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCCTCGGAGCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCCTCGGAGCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCA-CCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCCTCGGAG-CAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCCTCGGAGCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCCTCGGAGCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tctcacttactggggctgtcatccctttactcatctttatctctccccagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCCTCGGAGCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcataccacccttcttccctctccagattctcctcacttgaatta #### Tdrd1_ID12222_23 --> 2 - 0 Original Alignment agATACCACACAGCAGAGACTGCTGT-TGCACAGAGTTACAGAAACAG gatccgtctctgccttgacctaggtccaagtcacttgctctgccttccagagATACCACACAGTAGAGACTGCTGTCTGCACAG-ATTACAGAAACAGgtaagaattggtgctgcttcaaacatgaagcacatgtgctgcctcccatt Alignment from CESAR agATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccgtctctgccttgacctaggtccaagtcacttgctctgccttccagagATACCACACAGTAGAGACTGCTGTCTGCACAGATTACAGAAACAGgtaagaattggtgctgcttcaaacatgaagcacatgtgctgcctcccatt Alignment from Spaln_aa2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccgtctctgccttgacctaggtccaagtcacttgctctgccttccagAGATACCACACAGTAGAGACTGCTGTCTGCACAGATTACAGAAACAGgtaagaattggtgctgcttcaaacatgaagcacatgtgctgcctcccatt Alignment from Spaln_nt2Genome AGATACCACACAGCAGAGACTGCTGT-TGCACAGAGTTACAGAAACAG gatccgtctctgccttgacctaggtccaagtcacttgctctgccttccagAGATACCACACAGTAGAGACTGCTGTCTGCACAGA-TTACAGAAACAGgtaagaattggtgctgcttcaaacatgaagcacatgtgctgcctcccatt Alignment from Pairagon AGATACCACACAGCAGAGACTGCTGT-TGCACAGAGTTACAGAAACAG gatccgtctctgccttgacctaggtccaagtcacttgctctgccttccagAGATACCACACAGTAGAGACTGCTGTCTGCACAGA-TTACAGAAACAGgtaagaattggtgctgcttcaaacatgaagcacatgtgctgcctcccatt Alignment from Exonerate_protein2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccgtctctgccttgacctaggtccaagtcacttgctctgccttccagAGATACCACACAGTAGAGACTGCTGTCTGCACAGATTACAGAAACAGgtaagaattggtgctgcttcaaacatgaagcacatgtgctgcctcccatt Alignment from Exonerate_coding2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccgtctctgccttgacctaggtccaagtcacttgctctgccttccagAGATACCACACAGTAGAGACTGCTGTCTGCACAGATTACAGAAACAGgtaagaattggtgctgcttcaaacatgaagcacatgtgctgcctcccatt Alignment from GeneWise AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gatccgtctctgccttgacctaggtccaagtcacttgctctgccttccagAGATACCACACAGTAGAGACTGCTGTCTGCACAGATTACAGAAACAGgtaagaattggtgctgcttcaaacatgaagcacatgtgctgcctcccatt #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAG-AAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagttATTGGTTATTACATCTTCCGAGGGGCCAACTCCGAGCAAAAACACAT-CAGGCAGAATCCTTCTGAGCCCAGTGTGGCTggtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from CESAR ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagttATTGGTTATTACATCTTCCGAGGGGCCAACTCCGAGCAAAAACACATCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTggtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCGAGGGGCCAACTCCGAGCAAAAACACATCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCGAGGGGCCAACTCCGAGCAAAAACACATCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Pairagon TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAG-AAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCGAGGGGCCAACTCCGAGCAAAAACACA-TCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCGAGGGGCCAACTCCGAGCAAAAACACATCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCGAGGGGCCAACTCCGAGCAAAAACACATCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from GeneWise TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTGGT------------------------------------------------ aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCGAGGGGCCAACTCCGAGCAAAAACACATCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGGTAATATGGGTCTCTTAGAGATTATGCTTAATCGAACTGGAGGGCTTTGT #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGG-CTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttaggcTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCCTGG-TGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGACTCCTGGGGGAAACTCAggtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttaggcTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCCTGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGACTCCTGGGGGAAACTCAggtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCCTGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGACTCCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCCTGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGACTCCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCCTGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGACTCCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCCTGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGACTCCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCCTGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGACTCCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgtaagccaccccaggcttcacatgtattctccttttagGCTTCCAGGCTGTGGTGCTAACAGCTCTGTTGATGGGGCCTGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCGAAGGCTTTGGTAACACCTGCCTCAGCCCTGACTCCTGGGGGAAACTCAGgtaaaaaaggtcccaatcaggtctggatgaggtaggggggatgcatgcat #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGC-CTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaaggcGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCC-GCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaaggcGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCG-CCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCC-GCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgttgctctgcattctgtatttgaagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACCTCCTGGCCCGCCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCGCATGCAAGgtaagggatctgtcgcaacacacgaaggataaggggcagggagggtcgta #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATA-CTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagaGGTTCTATAGGGCTCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATCTTAGTGTCTGCCTGTATACCTTCGAT-TGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTaggtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagaGGTTCTATAGGGCTCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATCTTAGTGTCTGCCTGTATACCTTCGATTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTaggtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATCTTAGTGTCTGCCTGTATACCTTCGATTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATCTTAGTGTCTGCCTGTATACCTTCGATTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATCTTAGTGTCTGCCTGTATACCTTCGATTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATCTTAGTGTCTGCCTGTATACCTTCGATTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATCTTAGTGTCTGCCTGTATACCTTCGATTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG gtttgaggtgaatcccacgtaggctgacggcttctcacttgccctgacagAGGTTCTATAGGGCTCCGGATTGCTTTGGCCATCTCGGCTACAGCCATCTTCCTAATCTTAGTGTCTGCCTGTATACCTTCGATTGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaaggggtgagggagggaaccctagcacggactgtcattctgtggggga #### Trim8_ID9936_5 --> 1 - 1 Original Alignment gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAG-AAGCAGTTGCGGAAGATGCTAGAAg catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccaggACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGCAAGCAGTTGC-GAAGATGCTTGAAggtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from CESAR gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccaggACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGCAAGCAGTTGCGAAGATGCTTGAAggtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from Spaln_aa2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGCAAGCAGTTGCGAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from Spaln_nt2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAG-AAGCAGTTGCGGAAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGCAAGCAGTTGC-GAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from Pairagon GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAG-AAGCAGTTGCGGAAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGCAAGCAGTTGC-GAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from Exonerate_protein2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGCAAGCAGTTGCGAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from Exonerate_coding2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGCAAGCAGTTGCGAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from GeneWise GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGCAAGCAGTTGCGAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac #### Trpt1_ID1982_5 --> 2 - 1 Original Alignment gcATTCGTCCAAATTGT-GAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg cacatagctatgcaggggaacagagagcaaattctttgttttttttctaggcATTCGACCAAATTGTCGAAG-GACAGTGTTTATTGATGGGCCCCTAGCCCTCACAggtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from CESAR gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg cacatagctatgcaggggaacagagagcaaattctttgttttttttctaggcATTCGACCAAATTGTCGAAGGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAggtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Spaln_aa2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTCGAAGGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Spaln_nt2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTCGAAGGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Pairagon GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTCGAAGGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Exonerate_protein2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTCGAAGGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Exonerate_coding2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTCGAAGGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from GeneWise GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTCGAAGGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAAT-CGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctaatgaagagtaggaacgtccacctttctctatttccagACCAACGCCCGACTCACTGGAAATCCGGCGCT-CTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctaatgaagagtaggaacgtccacctttctctatttccagACCAACGCCCGACTCACTGGAAATCCGGCGCTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Spaln_aa2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCCGGCGCTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Spaln_nt2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCCGGCGCTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCCGGCGCTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCCGGCGCTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCCGGCGCTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCCGGCGCTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt #### Tut1_ID2554_7 --> 2 - 1 Original Alignment gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTT-CCTACTGTGGCCCAGCTTACCCAGAGAGCAg ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacaggaGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCCTA-TGTGGCCCAGCTAACCCAGAGAGCAggtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from CESAR gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacaggaGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCCTATGTGGCCCAGCTAACCCAGAGAGCAggtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from Spaln_aa2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCCTATGTGGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from Spaln_nt2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCCTATGTGGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from Pairagon GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCCTATGTGGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from Exonerate_protein2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCCTATGTGGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from Exonerate_coding2genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCCTATGTGGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct Alignment from GeneWise GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG ccggtcttgtaaatagtacttcccaactagctgagtgctctcctccacagGAGGTGGCCCCCTCCTCAATAACTATGCCTTGACATTGTTGGTCATCTACTTGCTTCAGACCAGAGACCCTCCAGTACTTCCCTATGTGGCCCAGCTAACCCAGAGAGCAGgtaaggcagaatggcctctaccatcatgatcacagcttcatcttatccct #### Unc93b1_ID211_2 --> 0 - 1 Original Alignment TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAAC-GTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATCGTGT-GGCAGCCAGCACAGGTGTCACCCTTACTTATGGCATCTACCTGggttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from CESAR TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATCGTGTGGCAGCCAGCACAGGTGTCACCCTTACTTATGGCATCTACCTGggttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Spaln_aa2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATCGTGTGGCAGCCAGCACAGGTGTCACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Spaln_nt2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATCGTGTGGCAGCCAGCACAGGTGTCACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Pairagon TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAA-CGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATCGTG-TGGCAGCCAGCACAGGTGTCACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Exonerate_protein2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATCGTGTGGCAGCCAGCACAGGTGTCACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Exonerate_coding2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATCGTGTGGCAGCCAGCACAGGTGTCACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from GeneWise TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tcttggagtttgaatggggagccaacaacatacggtttttgcctttctagCTGGACGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATCGTGTGGCAGCCAGCACAGGTGTCACCCTTACTTATGGCATCTACCTGGgttagtaggacatagtaactctgcttgccctcttcctctacaacttcaaa #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAG-CAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcaggATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCCAGGGAC-TCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcaggATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCCAGGGACTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCCAGGGACTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCCAGGGACTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCCAGGGACTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCCAGGGACTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCCAGGGACTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCCAGGGACTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGT-GCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTCGCCCAGC-GCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTggtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTCGCCCAGCGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTggtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTCGCCCAGCGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGT-GCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTCGCCCAGC-GCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from Pairagon TTGAGCTTCGCGTGT-GCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTCGCCCAGC-GCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTCGCCCAGCGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTCGCCCAGCGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTCGCCCAGCGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTG-GAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGCGAATGTGTGG-CACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTG-GAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGCGAATGTGTG-GCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGCGAATGTGTGGCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGCGAATGTGTGGCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTG-GAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGCGAATGTGTG-GCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGCGAATGTGTGGCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGCGAATGTGTGGCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGCGAATGTGTGGCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca #### Vldlr_ID5807_6 --> 2 - 1 Original Alignment ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATC-CACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg gccagaagccatttggctgccttcattcagtttctcttctattccaccagctTCTCAAACCTGCCGACCTGATCAATTTGAATGTGAAGATGGTACCTGCATCCCATG-TAGCAGACAATGTAATGGCATCCAAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACagtaaggttctctttttggttgagttaggctattggctacccctgtcagaa Alignment from CESAR ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg gccagaagccatttggctgccttcattcagtttctcttctattccaccagctTCTCAAACCTGCCGACCTGATCAATTTGAATGTGAAGATGGTACCTGCATCCCATGTAGCAGACAATGTAATGGCATCCAAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACagtaaggttctctttttggttgagttaggctattggctacccctgtcagaa Alignment from Spaln_aa2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG gccagaagccatttggctgccttcattcagtttctcttctattccaccagCTTCTCAAACCTGCCGACCTGATCAATTTGAATGTGAAGATGGTACCTGCATCCCATGTAGCAGACAATGTAATGGCATCCAAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaaggttctctttttggttgagttaggctattggctacccctgtcagaa Alignment from Spaln_nt2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG gccagaagccatttggctgccttcattcagtttctcttctattccaccagCTTCTCAAACCTGCCGACCTGATCAATTTGAATGTGAAGATGGTACCTGCATCCCATGTAGCAGACAATGTAATGGCATCCAAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaaggttctctttttggttgagttaggctattggctacccctgtcagaa Alignment from Pairagon CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG gccagaagccatttggctgccttcattcagtttctcttctattccaccagCTTCTCAAACCTGCCGACCTGATCAATTTGAATGTGAAGATGGTACCTGCATCCCATGTAGCAGACAATGTAATGGCATCCAAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaaggttctctttttggttgagttaggctattggctacccctgtcagaa Alignment from Exonerate_protein2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG gccagaagccatttggctgccttcattcagtttctcttctattccaccagCTTCTCAAACCTGCCGACCTGATCAATTTGAATGTGAAGATGGTACCTGCATCCCATGTAGCAGACAATGTAATGGCATCCAAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaaggttctctttttggttgagttaggctattggctacccctgtcagaa Alignment from Exonerate_coding2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG gccagaagccatttggctgccttcattcagtttctcttctattccaccagCTTCTCAAACCTGCCGACCTGATCAATTTGAATGTGAAGATGGTACCTGCATCCCATGTAGCAGACAATGTAATGGCATCCAAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaaggttctctttttggttgagttaggctattggctacccctgtcagaa Alignment from GeneWise CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG gccagaagccatttggctgccttcattcagtttctcttctattccaccagCTTCTCAAACCTGCCGACCTGATCAATTTGAATGTGAAGATGGTACCTGCATCCCATGTAGCAGACAATGTAATGGCATCCAAGACTGTGTTGATGGCTCTGATGAAGTAAACTGTAGAAACAgtaaggttctctttttggttgagttaggctattggctacccctgtcagaa #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGGATC-TGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg gatctaatgggacataggaagaacagagccttgatcccccgctgccccagatATCGATGAATGCCAAAACCCAGGGATCCTGCA-TCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTTGCCACTGGCGTGTGCAAGGCAATAggtagggagtcaacctggagcaatgctattaagctctgagtgtagcaggat Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg gatctaatgggacataggaagaacagagccttgatcccccgctgccccagatATCGATGAATGCCAAAACCCAGGGATCCTGCATCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTTGCCACTGGCGTGTGCAAGGCAATAggtagggagtcaacctggagcaatgctattaagctctgagtgtagcaggat Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggacataggaagaacagagccttgatcccccgctgccccagATATCGATGAATGCCAAAACCCAGGGATCCTGCATCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTTGCCACTGGCGTGTGCAAGGCAATAGgtagggagtcaacctggagcaatgctattaagctctgagtgtagcaggat Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggacataggaagaacagagccttgatcccccgctgccccagATATCGATGAATGCCAAAACCCAGGGATCCTGCATCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTTGCCACTGGCGTGTGCAAGGCAATAGgtagggagtcaacctggagcaatgctattaagctctgagtgtagcaggat Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggacataggaagaacagagccttgatcccccgctgccccagATATCGATGAATGCCAAAACCCAGGGATCCTGCATCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTTGCCACTGGCGTGTGCAAGGCAATAGgtagggagtcaacctggagcaatgctattaagctctgagtgtagcaggat Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggacataggaagaacagagccttgatcccccgctgccccagATATCGATGAATGCCAAAACCCAGGGATCCTGCATCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTTGCCACTGGCGTGTGCAAGGCAATAGgtagggagtcaacctggagcaatgctattaagctctgagtgtagcaggat Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggacataggaagaacagagccttgatcccccgctgccccagATATCGATGAATGCCAAAACCCAGGGATCCTGCATCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTTGCCACTGGCGTGTGCAAGGCAATAGgtagggagtcaacctggagcaatgctattaagctctgagtgtagcaggat Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggacataggaagaacagagccttgatcccccgctgccccagATATCGATGAATGCCAAAACCCAGGGATCCTGCATCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTTGCCACTGGCGTGTGCAAGGCAATAGgtagggagtcaacctggagcaatgctattaagctctgagtgtagcaggat #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTG-GAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagacCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCCAAGTTCC-AGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from CESAR acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagacCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCCAAGTTCCAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Spaln_aa2Genome CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG caagcttggggagaaagtagctgaattccccactgtcaaaccaaca gACCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCCAAGTTCCAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagACCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCCAAGTTCCAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Pairagon ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagACCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCCAAGTTCCAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Exonerate_protein2genome TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaaCAGACCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCCAAGTTCCAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Exonerate_coding2genome TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaaCAGACCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCCAAGTTCCAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from GeneWise TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagAC---CTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCCAAGTTCCAGCTCATCCTCTTGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg #### Vps13a_ID4058_65 --> 2 - 0 Original Alignment gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGAC-TACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtaggtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACCTACC-GCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from CESAR gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtaggtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACCTACCGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from Spaln_aa2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACCTACCGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from Spaln_nt2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACCTACCGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from Pairagon GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACCTACCGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from Exonerate_protein2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACCTACCGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from Exonerate_coding2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACCTACCGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from GeneWise GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACCTACCGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagctTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCACGAATTAT-CTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAggtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagctTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCACGAATTATCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAggtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCACGAATTATCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCACGAATTATCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCACGAATTATC-TGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCACGAATTATCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCACGAATTATCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCACGAATTATCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca #### Vps13a_ID4111_12 --> 0 - 2 Original Alignment TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAA-AACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGCAACCAGCCAT-CAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGtggtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from CESAR TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGCAACCAGCCATCAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGtggtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Spaln_aa2Genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGCAACCAGCCATCAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Spaln_nt2Genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGCAACCAGCCATCAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Pairagon TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAA-AACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGCAACCAGCCAT-CAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Exonerate_protein2genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGCAACCAGCCATCAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Exonerate_coding2genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGCAACCAGCCATCAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from GeneWise TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGCAACCAGCCATCAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta #### Vps13a_ID4114_9 --> 0 - 0 Original Alignment CTAATCCGATTAGATAATCTCTTTGCTTACTGG-AATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGCAATGTGA-CTCTGAGATGTTCTATCTGAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from CESAR CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGCAATGTGACTCTGAGATGTTCTATCTGAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from Spaln_aa2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGCAATGTGACTCTGAGATGTTCTATCTGAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from Spaln_nt2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGCAATGTGACTCTGAGATGTTCTATCTGAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from Pairagon CTAATCCGATTAGATAATCTCTTTGCTTACTGG-AATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGCAATGTG-ACTCTGAGATGTTCTATCTGAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from Exonerate_protein2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGCAATGTGACTCTGAGATGTTCTATCTGAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from Exonerate_coding2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGCAATGTGACTCTGAGATGTTCTATCTGAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from GeneWise CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGCAATGTGACTCTGAGATGTTCTATCTGAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGTGGGAGT-GGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagccCTCTGCTCCTTTGGCTGTGGAAGTCGGCATCT-CATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAggtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from CESAR ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagccCTCTGCTCCTTTGGCTGTGGAAGTCGGCATCTCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAggtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Spaln_aa2Genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTCGGCATCTCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Spaln_nt2Genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTCGGCATCTCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Pairagon CCCTCTGCTCCTTTGGCTGTGGGAGT-GGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTCGGCATCT-CATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTCGGCATCTCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Exonerate_coding2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTCGGCATCTCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from GeneWise CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTCGGCATCTCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTG-AATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagacTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTC-GGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagacTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTG-AATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTC-GGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Exonerate_coding2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTG-GTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCCGTTG-CACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCCGTTGCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGG-CAGCTGGCAGAAATTGATTTTCGGCAAg gaaagggatccagaagtcacactgatcccctcttgggcgcttgttcacagtTCTGTCATCGTAGGGAACACTCATGGGCCAACTGGCAG-AATTGATTTTCGGCAAggtaagtagaccatggatttcttgagaaggggagcaaatgaggggtcacta Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg gaaagggatccagaagtcacactgatcccctcttgggcgcttgttcacagtTCTGTCATCGTAGGGAACACTCATGGGCCAACTGGCAGAATTGATTTTCGGCAAggtaagtagaccatggatttcttgagaaggggagcaaatgaggggtcacta Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG gaaagggatccagaagtcacactgatcccctcttgggcgcttgttcacagTTCTGTCATCGTAGGGAACACTCATGGGCCAACTGGCAGAATTGATTTTCGGCAAGgtaagtagaccatggatttcttgagaaggggagcaaatgaggggtcacta Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG gaaagggatccagaagtcacactgatcccctcttgggcgcttgttcacagTTCTGTCATCGTAGGGAACACTCATGGGCCAACTGGCAGAATTGATTTTCGGCAAGgtaagtagaccatggatttcttgagaaggggagcaaatgaggggtcacta Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGG-CAGCTGGCAGAAATTGATTTTCGGCAAG gaaagggatccagaagtcacactgatcccctcttgggcgcttgttcacagTTCTGTCATCGTAGGGAACACTCATGGGCCAACTGGCAG-AATTGATTTTCGGCAAGgtaagtagaccatggatttcttgagaaggggagcaaatgaggggtcacta Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG gaaagggatccagaagtcacactgatcccctcttgggcgcttgttcacagTTCTGTCATCGTAGGGAACACTCATGGGCCAACTGGCAGAATTGATTTTCGGCAAGgtaagtagaccatggatttcttgagaaggggagcaaatgaggggtcacta Alignment from Exonerate_coding2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG gaaagggatccagaagtcacactgatcccctcttgggcgcttgttcacagTTCTGTCATCGTAGGGAACACTCATGGGCCAACTGGCAGAATTGATTTTCGGCAAGgtaagtagaccatggatttcttgagaaggggagcaaatgaggggtcacta Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAGGGCG gaaagggatccagaagtcacactgatcccctcttgggcgcttgttcacagTTCTGTCATCGTAGGGAACACTCATGGGCCAACTGGCAGAATTGATTTTCGGCAAGGTAAgtagaccatggatttcttgagaaggggagcaaatgaggggtcacta #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTC-TCAGAGAGACAAGACATTTGCAATGAGATAg attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCCTCAGAGAGAC-AGACATTTGTAATGAAATAggtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from CESAR ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCCTCAGAGAGACAGACATTTGTAATGAAATAggtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCCTCAGAGAGACAGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTC-TCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCCTCAGAGAGAC-AGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from Pairagon ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGT-CTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCCTCAGAGAGAC-AGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCCTCAGAGAGACAGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCCTCAGAGAGACAGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attaactctttgaacattgttatgggttgttgtttgactttgtttttcagACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCGAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCTGTCCTCAGAGAGACAGACATTTGTAATGAAATAGgtaagaacctttttctgataaattaaagggattctaacagtcccagcatc #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCC-TTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCCTTCAGTGTCA-CAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCCTTCAGTGTCACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCCTTCAGTGTCACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCCTTCAGTGTCACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAG-CCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCCTTCAGTGTC-ACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCCTTCAGTGTCACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCCTTCAGTGTCACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaACCTACAGCTATTTCTGCTTATCTGCAGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCCTTCAGTGTCACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCAC-CTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCCTCTTGGCTT-CAGCAGTTACAAATATGTGgggtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCCTCTTGGCTTCAGCAGTTACAAATATGTGgggtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCCTCTTGGCTTCAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCCTCTTGGCTTCAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCA-CCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCCTCTTGGCTT-CAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCCTCTTGGCTTCAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCCTCTTGGCTTCAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCCTCTTGGCTTCAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg #### Yif1a_ID835_7 --> 1 - 0 Original Alignment gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTAC-GTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacaggATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACTATCGTGGCCC-GGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaatctatgcattt Alignment from CESAR gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacaggATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACTATCGTGGCCCGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaatgtgccatttc Alignment from Spaln_aa2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACTATCGTGGCCCGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaatctatgcattt Alignment from Spaln_nt2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACTATCGTGGCCCGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaatctatgcattt Alignment from Pairagon GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTA-CGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACTATCGTGGCCC-GGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaatctatgcattt Alignment from Exonerate_protein2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACTATCGTGGCCCGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaatctatgcattt Alignment from Exonerate_coding2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACTATCGTGGCCCGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaatctatgcattt Alignment from GeneWise GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACTATCGTGGCCCGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaatctatgcattt #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACC-ACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCCACTC-CCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCCACTCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCCACTCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCCACTCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCCACTCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCCACTCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCCACTCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccgctgtgccattctctctgctagGTGTTTGTGGTGCTGGTGATTGTGTTGACTGGTTCCATCGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTATTATCAGGCCATCACCCACTCCCATGGATATCCACCCCAGgtaagactccatagggcatggcaagagacaattctggctgctgtgctagc #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAG-CCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCCAG-CCGAACACACCACTGCAGCATCTGTAACaggtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from CESAR GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCCAGCCGAACACACCACTGCAGCATCTGTAACaggtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCCAGCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCCAGCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Pairagon GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCCAGCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCCAGCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCCAGCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCCAGCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACAT-CAGTCTCCCGGTGGCATTag gagtttttggctacgtaagtgtctcaattgctctttattccctctatcagatGTTCCAGAAGAACATCCAAT-TCCTGGTGGCATTaggtaaaagtctattccatacatacttaatgtttcaatatttcactggatcc Alignment from CESAR atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag gagtttttggctacgtaagtgtctcaattgctctttattccctctatcagatGTTCCAGAAGAACATCCAATTCCTGGTGGCATTaggtaaaagtctattccatacatacttaatgtttcaatatttcactggatcc Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctacgtaagtgtctcaattgctctttattccctctatcagATGTTCCAGAAGAACATCCAATTCCTGGTGGCATTAGgtaaaagtctattccatacatacttaatgtttcaatatttcactggatcc Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctacgtaagtgtctcaattgctctttattccctctatcagATGTTCCAGAAGAACATCCAATTCCTGGTGGCATTAGgtaaaagtctattccatacatacttaatgtttcaatatttcactggatcc Alignment from Pairagon ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctacgtaagtgtctcaattgctctttattccctctatcagATGTTCCAGAAGAACATCCAATTCCTGGTGGCATTAGgtaaaagtctattccatacatacttaatgtttcaatatttcactggatcc Alignment from Exonerate_protein2genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctacgtaagtgtctcaattgctctttattccctctatcagATGTTCCAGAAGAACATCCAATTCCTGGTGGCATTAGgtaaaagtctattccatacatacttaatgtttcaatatttcactggatcc Alignment from Exonerate_coding2genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctacgtaagtgtctcaattgctctttattccctctatcagATGTTCCAGAAGAACATCCAATTCCTGGTGGCATTAGgtaaaagtctattccatacatacttaatgtttcaatatttcactggatcc Alignment from GeneWise ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctacgtaagtgtctcaattgctctttattccctctatcagATGTTCCAGAAGAACATCCAATTCCTGGTGGCATTAGgtaaaagtctattccatacatacttaatgtttcaatatttcactggatcc ####