#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGT-GAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTCGAGA-CATTCTGTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTCGAGACATTCTGTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTCGAGACATTCTGTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCT GCAGAC acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTCGAGACATTCTGTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTgcagacctggatgaaggatgaacctttgtccaccaacttggtgagtcacatcacaccagatacacaaacacacatgcatacaag-TAGAC Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTCGAGACATTCTGTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTCGAGACATTCTGTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTCGAGACATTCTGTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTCGAGACATTCTGTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc #### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTAT-CCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCCTGTGAACT-GATGATCATACCCTTGGTGGGGGCTATTGCTACAggtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCCTGTGAACTGATGATCATACCCTTGGTGGGGGCTATTGCTACAggtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCCTGTGAACTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCCTGTGAACTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from Pairagon CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTAT-CCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCCTGTGAAC-TGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCCTGTGAACTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCCTGTGAACTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccacccttacttgtctggtctgagcagtgccttctcaacagCTCACCAAACTGAGCACAGCCTTCATCTGGAAAGAACCCTTTGGTCTGGTGCTTATCATTGCACCCTGGAACTATCCCTGTGAACTGATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtgagtggggttccaagtttcactagtctgatctatctctgtcttcctaa #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcaggaAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTAC-TCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcaggaAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTA-CTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTA-CTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat #### 1700055N04Rik_ID228_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTGATGTTGGGAGGACCC-GAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTCGAGGAGA-TGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGggtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from CESAR AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTCGAGGAGATGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGggtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTCGAGGAGATGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTCGAGGAGATGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from Pairagon AGCTGCTTTGCTGTGATGTTGGGAGGACC-CGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTCGAGGAGA-TGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTCGAGGAGATGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTCGAGGAGATGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from GeneWise AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTCGAGGAGATGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGG-GATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGCGATTGGC-GAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGgcgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGCGATTGGCGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGgcgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGCGATTGGCGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGCGATTGGCGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGG-GATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGCGATTGGCGA-GGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGCGATTGGCGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGCGATTGGCGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaggcctaggccttacatgcatacttgtttctgttgctttccagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGCGATTGGCGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaagtacaagttggatccacttcttaccagatatagtggatctctaagt #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCC-CAGAAAGAAAAAGCAGCCATGGAAg gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcaggTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCCAGA-ACAAAAAGCAGCCATGAAAggtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcaggTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCCAGAACAAAAAGCAGCCATGAAAggtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCCAGAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCCAGAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from Pairagon GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCCAGAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCCAGAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCCAGAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG gcatggttgaccaagtgagaccttttctgggtggtgactcttgtcctcagGTCCAGTGCCCGTGCCAACATTACACTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCCAGAACAAAAAGCAGCCATGAAAGgtaaatcttgggggcaaaggctaccaaaaatgagactggatctcccctta #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAAT-ATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATCATCAGCC-GAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from CESAR GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATCATCAGCCGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from Spaln_aa2Genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATCATCAGCCGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from Spaln_nt2Genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATCATCAGCCGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from Pairagon GTCACAGATAAT-ATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATCATCAGCC-GAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATCATCAGCCGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from Exonerate_coding2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATCATCAGCCGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta Alignment from GeneWise GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttacgacaaataaacaaggaactcactgggcatgctcttgcagGTCACAGATAATCATCAGCCGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaagcttgacttcctaaaggcttttcctttatatgtagtccatcactta #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAAT-GAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgatggccaagtaaaagcagaaagaacctccttccacagGAATCTGAAGAAATCAAGTCGAATCGAGCTTG-TGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaccattaattcatccacactccctaatacattcagtttgatggggctg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgatggccaagtaaaagcagaaagaacctccttccacagGAATCTGAAGAAATCAAGTCGAATCGAGCTTGTGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaccattaattcatccacactccctaatacattcagtttgatggggctg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgatggccaagtaaaagcagaaagaacctccttccacagGAATCTGAAGAAATCAAGTCGAATCGAGCTTGTGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaccattaattcatccacactccctaatacattcagtttgatggggctg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgatggccaagtaaaagcagaaagaacctccttccacagGAATCTGAAGAAATCAAGTCGAATCGAGCTTGTGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaccattaattcatccacactccctaatacattcagtttgatggggctg Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAAT-GAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgatggccaagtaaaagcagaaagaacctccttccacagGAATCTGAAGAAATCAAGTCGAATCGAGCTTG-TGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaccattaattcatccacactccctaatacattcagtttgatggggctg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgatggccaagtaaaagcagaaagaacctccttccacagGAATCTGAAGAAATCAAGTCGAATCGAGCTTGTGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaccattaattcatccacactccctaatacattcagtttgatggggctg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgatggccaagtaaaagcagaaagaacctccttccacagGAATCTGAAGAAATCAAGTCGAATCGAGCTTGTGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaccattaattcatccacactccctaatacattcagtttgatggggctg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgatggccaagtaaaagcagaaagaacctccttccacagGAATCTGAAGAAATCAAGTCGAATCGAGCTTGTGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaccattaattcatccacactccctaatacattcagtttgatggggctg #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCAT-ATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagttACCCCTGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATCATGACCA-AATCCTGGACCCTGACCCAggtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagttACCCCTGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATCATGACCAAATCCTGGACCCTGACCCAggtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATCATGACCAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATCATGACCAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCAT-ATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATCATGACC-AAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATCATGACCAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATCATGACCAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from GeneWise TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATCATGACCAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg #### Acsl5_ID11602_7 --> 0 - 0 Original Alignment AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ctgtccatctttaatgactctttcttgtagacgattttttttccccacagAATATAGGCAAACGAGAACT-CAAGAAACCAGTGgtaagtagtctgcctgctaagtttgagtttttttagaccctctgtggttc Alignment from CESAR AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctgtccatctttaatgactctttcttgtagacgattttttttccccacagAATATAGGCAAACGAGAACTCAAGAAACCAGTGgtaagtagtctgcctgctaagtttgagtttttttagaccctctgtggttc Alignment from Spaln_aa2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctgtccatctttaatgactctttcttgtagacgattttttttccccacagAATATAGGCAAACGAGAACTCAAGAAACCAGTGgtaagtagtctgcctgctaagtttgagtttttttagaccctctgtggttc Alignment from Spaln_nt2Genome AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ctgtccatctttaatgactctttcttgtagacgattttttttccccacagAATATAGGCAAACGAGAAC-TCAAGAAACCAGTGgtaagtagtctgcctgctaagtttgagtttttttagaccctctgtggttc Alignment from Pairagon AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ctgtccatctttaatgactctttcttgtagacgattttttttccccacagAATATAGGCAAACGAGAAC-TCAAGAAACCAGTGgtaagtagtctgcctgctaagtttgagtttttttagaccctctgtggttc Alignment from Exonerate_protein2genome ctgtccatctttaatgactctttcttgtagacgattttttttccccacagaatataggcaaacgagaactcaagaaaccagtggtaagtagtctgcctgctaagtttgagtttttttagaccctctgtggttc Alignment from Exonerate_coding2genome ctgtccatctttaatgactctttcttgtagacgattttttttccccacagaatataggcaaacgagaactcaagaaaccagtggtaagtagtctgcctgctaagtttgagtttttttagaccctctgtggttc Alignment from GeneWise ctgtccatctttaatgactctttcttgtagacgattttttttccccacagaatataggcaaacgagaactcaagaaaccagtggtaagtagtctgcctgctaagtttgagtttttttagaccctctgtggttc #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAAC-TACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttaggtCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACCTACTTTT-AGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttaggtCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACCTACTTTTAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACCTACTTTTAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACCTACTTTTAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACCTACTTTTAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACCTACTTTTAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACCTACTTTTAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACCTACTTTTAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc #### Actn3_ID690_20 --> 0 - 0 Original Alignment GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCT-GGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctactttagcatctatgcacacagtgagaaccactgcctttctcagGGAGAAGTGGAGTTTGCTCGTATCATGACCATGGTTGACCCCAATGCAGCTCGGAG-TGTGAACTTCCAGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTGGTGGCCTCATTA---ATCCTGGCAGGAGATAAGgtgagtctcattggtgagaggggctgtaatgctaggacatgactcaaaac Alignment from CESAR GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctactttagcatctatgcacacagtgagaaccactgcctttctcagGGAGAAGTGGAGTTTGCTCGTATCATGACCATGGTTGACCCCAATGCAGCTCGGAGTGTGAACTTCCAGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTGGTGGCCTCATTA---ATCCTGGCAGGAGATAAGgtgagtctcattggtgagaggggctgtaatgctaggacatgactcaaaac Alignment from Spaln_aa2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctactttagcatctatgcacacagtgagaaccactgcctttctcagGGAGAAGTGGAGTTTGCTCGTATCATGACCATGGTTGACCCCAATGCAGCTCGGAGTGTGAACTTCCAGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTGGTGGCCTCATTA---ATCCTGGCAGGAGATAAGgtgagtctcattggtgagaggggctgtaatgctaggacatgactcaaaac Alignment from Spaln_nt2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctactttagcatctatgcacacagtgagaaccactgcctttctcagGGAGAAGTGGAGTTTGCTCGTATCATGACCATGGTTGACCCCAATGCAGCTCGGAGTGTGAACTTCCAGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTGGTGGCCTCATT---AATCCTGGCAGGAGATAAGgtgagtctcattggtgagaggggctgtaatgctaggacatgactcaaaac Alignment from Pairagon GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctactttagcatctatgcacacagtgagaaccactgcctttctcagGGAGAAGTGGAGTTTGCTCGTATCATGACCATGGTTGACCCCAATGCAGCTCGGAGTGTGAACTTCCAGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTGGTGGCCTCATT---AATCCTGGCAGGAGATAAGgtgagtctcattggtgagaggggctgtaatgctaggacatgactcaaaac Alignment from Exonerate_protein2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctactttagcatctatgcacacagtgagaaccactgcctttctcagGGAGAAGTGGAGTTTGCTCGTATCATGACCATGGTTGACCCCAATGCAGCTCGGAGTGTGAACTTCCAGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTGGTGGCCTCATTA---ATCCTGGCAGGAGATAAGgtgagtctcattggtgagaggggctgtaatgctaggacatgactcaaaac Alignment from Exonerate_coding2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctactttagcatctatgcacacagtgagaaccactgcctttctcagGGAGAAGTGGAGTTTGCTCGTATCATGACCATGGTTGACCCCAATGCAGCTCGGAGTGTGAACTTCCAGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTGGTGGCCTCATTA---ATCCTGGCAGGAGATAAGgtgagtctcattggtgagaggggctgtaatgctaggacatgactcaaaac Alignment from GeneWise GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctactttagcatctatgcacacagtgagaaccactgcctttctcagGGAGAAGTGGAGTTTGCTCGTATCATGACCATGGTTGACCCCAATGCAGCTCGGAGTGTGAACTTCCAGGCCTTCATTGACTCCATGACGCGAAAGACTGCTGAGACAGACATAGCAGAACAGGTGGTGGCCTCATTA---ATCCTGGCAGGAGATAAGgtgagtctcattggtgagaggggctgtaatgctaggacatgactcaaaac #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGA-GGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from CESAR AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aggaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGAGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Spaln_aa2Genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGAGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Spaln_nt2Genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGAGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Pairagon AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGA-GGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Exonerate_protein2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGAGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Exonerate_coding2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGAGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from GeneWise AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGAGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCAC-ACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAG-CTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCA-CACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAG-CTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACCACAGCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt #### Actn3_ID694_16 --> 0 - 0 Original Alignment GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTC-CGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCAAGTGAATGAGAGGTCACCGGCGGC-GTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from CESAR GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCAAGTGAATGAGAGGTCACCGGCGGCGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Spaln_aa2Genome GTCAGAAAGCTGGTACCC---AGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCAAGTGAATGAGAGGTCACCGGCGGCGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Spaln_nt2Genome GTCAGAAA---GCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCAAGTGAATGAGAGGTCACCGGCGGCGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Pairagon GTCAG---AAAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGG-CTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCAAGTGAATGAGAGGTCACCGGCGGC-GTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Exonerate_protein2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCAAGTGAATGAGAGGTCACCGGCGGCGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Exonerate_coding2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCAAGTGAATGAGAGGTCACCGGCGGCGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from GeneWise ---GTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtataggtcagaaaaaagCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCAAGTGAATGAGAGGTCACCGGCGGCGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAG-TCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGCTCTGGTA-CCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGCTCTGGTACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGCTCTGGTACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGCTCTGGTACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGCTCTGGTACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGCTCTGGTACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGCTCTGGTACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGCTCTGGTACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAA-GGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tacacttccactcatgacctttgaccttactccttgcccctctcccccaggtGCAAGGCTGCCTAGGCCTGACAAACGGCAAGATGT-CTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAggtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tacacttccactcatgacctttgaccttactccttgcccctctcccccaggtGCAAGGCTGCCTAGGCCTGACAAACGGCAAGATGTCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAggtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAACGGCAAGATGTCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAACGGCAAGATGTCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAA-GGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAACGGCAAGATGT-CTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAACGGCAAGATGTCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAACGGCAAGATGTCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAACGGCAAGATGTCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt #### Actr1a_ID9870_10 --> 0 - 2 Original Alignment ATATCTGCACCCCAGGAG-AGACTGTATTCCACATGGATTgg gatatcagcactccaggagagagtgtactctgactttgttgggtttgcagATATCTGCACCCCAGGAGCCAACTGT-TTCCACATGGATCgggtaatgagcccttctaatggaataggatgggaagtaaaagctttcgatca Alignment from CESAR ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTgg gatatcagcactccaggagagagtgtactctgactttgttgggtttgcagATATCTGCACCCCAGGAGCCAACTGTTTCCACATGGATCgggtaatgagcccttctaatggaataggatgggaagtaaaagctttcgatca Alignment from Spaln_aa2Genome ATCTGCACCCCAGGAG---AGACTGTATTCCACATGGATTGG GATATCAGCACTCCAGGAGAGAGTGTACTCTGACTTTGTTGGgtttgcagatatctgcaccccaggagccaactgtttccacatggatcgggtaatgagcccttctaatggaataggatgggaagtaaaagctttcgatca Alignment from Spaln_nt2Genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcactccaggagagagtgtactctgactttgttgggtttgcagATATCTGCACCCCAGGAGCCAACTGTTTCCACATGGATCGGgtaatgagcccttctaatggaataggatgggaagtaaaagctttcgatca Alignment from Pairagon ATATCTGCACCCCAGGAG-AGACTGTATTCCACATGGATTGG gatatcagcactccaggagagagtgtactctgactttgttgggtttgcagATATCTGCACCCCAGGAGCCAACTGT-TTCCACATGGATCGGgtaatgagcccttctaatggaataggatgggaagtaaaagctttcgatca Alignment from Exonerate_protein2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcactccaggagagagtgtactctgactttgttgggtttgcagATATCTGCACCCCAGGAGCCAACTGTTTCCACATGGATCGGgtaatgagcccttctaatggaataggatgggaagtaaaagctttcgatca Alignment from Exonerate_coding2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcactccaggagagagtgtactctgactttgttgggtttgcagATATCTGCACCCCAGGAGCCAACTGTTTCCACATGGATCGGgtaatgagcccttctaatggaataggatgggaagtaaaagctttcgatca Alignment from GeneWise ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcactccaggagagagtgtactctgactttgttgggtttgcagATATCTGCACCCCAGGAGCCAACTGTTTCCACATGGATCGGgtaatgagcccttctaatggaataggatgggaagtaaaagctttcgatca #### Actr1a_ID9871_9 --> 2 - 0 Original Alignment gtTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCT-CCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccaggtTTTGGAGACAAACTACTGAGTGAAGTAAAGAAAGTTGCTCCTGA-AGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from CESAR gtTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccaggtTTTGGAGACAAACTACTGAGTGAAGTAAAGAAAGTTGCTCCTGAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from Spaln_aa2Genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAAGTTGCTCCTGAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from Spaln_nt2Genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAAGTTGCTCCTGAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from Pairagon GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAAGTTGCTCCTGAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from Exonerate_protein2genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAAGTTGCTCCTGAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from Exonerate_coding2genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAAGTTGCTCCTGAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from GeneWise GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAAGTTGCTCCTGAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGT-GACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccaggcATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTCGACC-AGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from CESAR gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccaggcATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTCGACCAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Spaln_aa2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTCGACCAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTCGACCAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Pairagon GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTCGACCAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTCGACCAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTCGACCAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from GeneWise GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTCGACCAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac #### Adrbk1_ID476_19 --> 0 - 0 Original Alignment CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGC-AAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACCAAGTGTC-ACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from CESAR CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACCAAGTGTCACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Spaln_aa2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACCAAGTGTCACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Spaln_nt2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACCAAGTGTCACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Pairagon CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACG-CAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACCAAGTGTC-ACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Exonerate_protein2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACCAAGTGTCACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Exonerate_coding2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACCAAGTGTCACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from GeneWise CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACCAAGTGTCACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTAAAAGAAAGT-CCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcaggGCTCAGGAGGTAAAAGAAAGTCCCCTTCT-TCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from CESAR gGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcaggGCTCAGGAGGTAAAAGAAAGTCCCCTTCTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Spaln_aa2Genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCCTTCTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Spaln_nt2Genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCCTTCTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Pairagon GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCCTTCTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Exonerate_protein2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCCTTCTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Exonerate_coding2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCCTTCTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from GeneWise -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCCTTCTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGC-TTTGTAGTCTACAGGGACCTGAAG TATGAACggtaagatagcttaggggatgcatttttgtctttctcctttaggcGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATCTTTGTAG-TTTCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAACggtacgctagcttaggggatgcatttttgtctttctcctttaggcGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATCTTTGTAGTTTCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAACGgtaagatagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATCTTTGTAGTTTCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCG-CTTTGTAGTCTACAGGGACCTGAAG TATGAACGgtaagatagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATCTTTGTAGT-TTCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCG-CTTTGTAGTCTACAGGGACCTGAAG TATGAACGgtaagatagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATCTTTGTAGTTT-CAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAACGgtaagatagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATCTTTGTAGTTTCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAACGgtaagatagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATCTTTGTAGTTTCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from GeneWise CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAACGgtaagatagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATCTTTGTAGTTTCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAG-CTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACACGCCAGATAAGCCTAA-CTTCATCCTGGACCTTATGAACggtacgctagcttaggggatgtgctaaccttgttggtgtccaggcGGGGAC Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACACGCCAGATAAGCCTAACTTCATCCTGGACCTTATGAACggtacgctagcttaggggatgcatttttgtctttctcctttaggcGGGGAC Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACACGCCAGATAAGCCTAACTTCATCCTGGACCTTATGAACGgtacgctagcttaggggatgtgctaaccttgttggtgtccagGCGGGGAC Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACACGCCAGATAAGCCTAACTTCATCCTGGACCTTATGAACGgtacgctagcttaggggatgtgctaaccttgttggtgtccagGCGGGGAC Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACGGT------------------------------------------GGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACACGCCAGATAAGCCTAACTTCATCCTGGACCTTATGAACGGTACGCTAGCTTAGGGGATGTGCTAACCTTGTTGGTGTCCAGGCGGGGAC Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACACGCCAGATAAGCCTAACTTCATCCTGGACCTTATGAACGgtacgctagcttaggggatgtgctaaccttgttggtgtccagGCGGGGAC Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACACGCCAGATAAGCCTAACTTCATCCTGGACCTTATGAACGgtacgctagcttaggggatgtgctaaccttgttggtgtccagGCGGGGAC Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACACGCCAGATAAGCCTAACTTCATCCTGGACCTTATGAACGgtacgctagcttaggggatgtgctaaccttgttggtgtccagGCGGGGAC #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGTCTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAG-ACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctaggTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGG-TCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from CESAR gTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctaggTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGG---ACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Pairagon GTACGCCATGAAGTGTCTGG---ACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Exonerate_coding2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from GeneWise GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGG-TTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctcaatgattgctagagtcactcctttaaaacacaactagtGACAAGTTCACACATCTTCTGTC-GTGGAAGAATATTGAGCTCAACATCCATgtgagcggttgtactccacaaaggtgactctggggggatgaagtctagtt Alignment from CESAR tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctcaatgattgctagagtcactcctttaaaacacaactagtGACAAGTTCACACATCTTCTGTCGTGGAAGAATATTGAGCTCAACATCCATgtgagcggttgtactccacaaaggtgactctggggggatgaagtctagtt Alignment from Spaln_aa2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctcaatgattgctagagtcactcctttaaaacacaactagTGACAAGTTCACACATCTTCTGTCGTGGAAGAATATTGAGCTCAACATCCATgtgagcggttgtactccacaaaggtgactctggggggatgaagtctagtt Alignment from Spaln_nt2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctcaatgattgctagagtcactcctttaaaacacaactagTGACAAGTTCACACATCTTCTGTCGTGGAAGAATATTGAGCTCAACATCCATgtgagcggttgtactccacaaaggtgactctggggggatgaagtctagtt Alignment from Pairagon TGACAAGTTCACACG-GTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctcaatgattgctagagtcactcctttaaaacacaactagTGACAAGTTCACACATCTTCTGTC-GTGGAAGAATATTGAGCTCAACATCCATgtgagcggttgtactccacaaaggtgactctggggggatgaagtctagtt Alignment from Exonerate_protein2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctcaatgattgctagagtcactcctttaaaacacaactagTGACAAGTTCACACATCTTCTGTCGTGGAAGAATATTGAGCTCAACATCCATgtgagcggttgtactccacaaaggtgactctggggggatgaagtctagtt Alignment from Exonerate_coding2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctcaatgattgctagagtcactcctttaaaacacaactagTGACAAGTTCACACATCTTCTGTCGTGGAAGAATATTGAGCTCAACATCCATgtgagcggttgtactccacaaaggtgactctggggggatgaagtctagtt Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctcaatgattgctagagtcactcctttaaaacacaactagTGACAAGTTCACACATCTTCTGTCGTGGAAGAATATTGAGCTCAACATCCATgtgagcggttgtactccacaaaggtgactctggggggatgaagtctagtt #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATT-TGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGA-ACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGaggtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from CESAR CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGaggtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from Spaln_nt2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from Pairagon CCATACATTGAGGAGATT-TGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAA-CTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from Exonerate_coding2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from GeneWise CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGAC-ACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACCACCATGG-TTCCGCCCCCATTTCTGCCAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAggtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACCACCATGGTTCCGCCCCCATTTCTGCCAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAggtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACCACCATGGTTCCGCCCCCATTTCTGCCAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACCACCATGGTTCCGCCCCCATTTCTGCCAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGA-CACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACCACCATGG-TTCCGCCCCCATTTCTGCCAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACCACCATGGTTCCGCCCCCATTTCTGCCAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACCACCATGGTTCCGCCCCCATTTCTGCCAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACCACCATGGTTCCGCCCCCATTTCTGCCAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc #### Afap1l2_ID12248_15 --> 0 - 0 Original Alignment GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCA-CATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACCATCAGG-TGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAACCACCACCCAGGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from CESAR GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACCATCAGGTGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAACCACCACCCAGGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from Spaln_aa2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACCATCAGGTGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAACCACCACCCAGGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from Spaln_nt2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACCATCAGGTGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAACCACCACCCAGGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from Pairagon GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCA-CATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACCATCAGG-TGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAACCACCACCCAGGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from Exonerate_protein2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACCATCAGGTGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAACCACCACCCAGGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from Exonerate_coding2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACCATCAGGTGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAACCACCACCCAGGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc Alignment from GeneWise GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cctcatagctaggggaataaaggagtaaacaatgatttttgttgttgcagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCCAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTAAAATCCTTCTTGCACAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACCATCAGGTGACGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAACCACCACCCAGGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtaagtgtgatttggtcactaactgtacccttcctctcctcaccaggccc #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTG-GCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGCGCTCAGG-GTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGCGCTCAGGGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGCGCTCAGGGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGCGCTCAGGGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTG-GCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGCGCTCAGG-GTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGCGCTCAGGGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGCGCTCAGGGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gcacgcatggctgcagccaggacttagctacttctcttcttgttttttagGAGCAGCCTGGCTCACCTGACTGGGTCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGCGCTCAGGGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccacttacagcccagattggacacttcccatccagtg #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC-ACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacaggaAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACCACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtgtgtattttattcccccccccccccagAGCTGCTTTGCTGTGATGTTG Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC-ACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacaggaAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACCACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtgtgcactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTG Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC---------------------------ACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACCACAGAGATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGGTGTGTATTTTATTCCCCCCCCCCCCCAGAGCTGCTTTGCTGTGATGTTG Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC-ACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-------------------------------AGCTGCTTTGCTGTGATGT gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACCACAGAGA---TGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGGTGTGTATTTTATTCCCCCCCCCCCCCAGAG--CTGCTTTGCTGTGATGT Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAA-CACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACCACAGAGA---TGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGGTGTGTATTTTATTCCCCCCCCCCCCCAGAGCTGCTTTGCTGTGATGTTG Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC-ACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACCACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAG---gtgtgtattttattcccccccccccccagagcTGCTTTGCTGTGATG Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAAC-ACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACCACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAG---gtgtgtattttattcccccccccccccagagcTGCTTTGCTGTGATG Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTG---------------CTGGCAGAGCTGCTGCCCCAGTATCTG------------GACCAGAGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACCACAGAGATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGGTGTGTATTTTATTCCCCCCCCCCCCCAGAGCTGCTTTGCTGTGATGTTG #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAG-ACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg CTGCCACAGCATCTGGACCAGgtgagtactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGCACCAGGCAGC-GCTGGAACACAAATTCGACTATATCTTCTTCACAggtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from CESAR CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg CTGCCACAGCATCTGGACCAGgtgtgcactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGCACCAGGCAGCGCTGGAACACAAATTCGACTATATCTTCTTCACAggtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Spaln_aa2Genome CTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTGCCACAGCATCTGGACCAGGTGAGTACTATTTTTTTCTTCTTGGTCagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGCACCAGGCAGCGCTGGAACACAAATTCGACTATATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Spaln_nt2Genome CTGCCCCAGTATCTGGAC-----------------------------CAGAGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTGCCACAGCATCTGGACCAGGTGAGTACTATTTTTTTCTTCTTGGTCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGCACCAGGCAGCGCTGGAACACAAATTCGACTATATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Pairagon CTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAG-ACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTGCCACAGCATCTGGACCAGGTGAGTACTATTTTTTTCTTCTTGGTCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGCACCAGGCAGC-GCTGGAACACAAATTCGACTATATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Exonerate_protein2genome CCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CCACAGCATCTGGACCAG---gtgagtactatttttttcttcttggtcagagcTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGCACCAGGCAGCGCTGGAACACAAATTCGACTATATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Exonerate_coding2genome CCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CCACAGCATCTGGACCAG---gtgagtactatttttttcttcttggtcagagcTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGCACCAGGCAGCGCTGGAACACAAATTCGACTATATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from GeneWise CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGAAG CTGCCACAGCATCTGGACCAGgtgagtactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGCACCAGGCAGCGCTGGAACACAAATTCGACTATATCTTCTTCACAGGTGAgtcctgaggatatggtagcactgtccaggacctggggtagagcagg #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGC-GGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactggggcatgctggcaacctttaaaaattttttttattttagagATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTCGGCTGTG-TGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAggtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactggggcatgctggcaacctttaaaaattttttttattttagagATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTCGGCTGTGTGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAggtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTCGGCTGTGTGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTCGGCTGTGTGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTG-CGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTCGGCTGTG-TGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from Exonerate_protein2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTCGGCTGTGTGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from Exonerate_coding2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTCGGCTGTGTGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAGGAAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTCGGCTGTGTGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGGTGAgtctatagccacatatgatattcccatctggcaactttctgatatg #### Ankrd13d_ID465_8 --> 0 - 1 Original Alignment GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCT-GACCAGGACAAGTTAAGGAACAAAg cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTCGACC-GGACAAGTTAAGGAACAAAggtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from CESAR GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAggtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from Spaln_aa2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from Spaln_nt2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from Pairagon GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from Exonerate_protein2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from Exonerate_coding2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from GeneWise GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTCGACCGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGA-GTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGCGACGTCCTCCTCC-ACATAATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTggtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGCGACGTCCTCCTCCACATAATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTggtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGCGACGTCCTCCTCCACATAATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGCGACGTCCTCCTCCACATAATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGA-GTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGCGACGTCCTCCTCC-ACATAATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGCGACGTCCTCCTCCACATAATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from Exonerate_coding2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGCGACGTCCTCCTCCACATAATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttttccgatgtattaatgctaagttctgttctctgcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGCGACGTCCTCCTCCACATAATGCCAATGTAGGCAAAGAAAGCCACCAAGGCTGGGCTGgtaagttactgggcagtgcttccatgttggtgaatggtgcctacaggact #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcgcagtgatgattgttctccacctgttcaatctcatattttgtttcagCTCCTCAGCACAGCGTTGCATGTGGCAGTGAGGACTCGGCCATT-CGAGTGCACTGAGCACCTCTTCACCAGCGAAACTGATCTCAATGCTAGGGACAGAgtaagaatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcgcagtgatgattgttctccacctgttcaatctcatattttgtttcagCTCCTCAGCACAGCGTTGCATGTGGCAGTGAGGACTCGGCCATTCGAGTGCACTGAGCACCTCTTCACCAGCGAAACTGATCTCAATGCTAGGGACAGAgtaagaatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcgcagtgatgattgttctccacctgttcaatctcatattttgtttcagCTCCTCAGCACAGCGTTGCATGTGGCAGTGAGGACTCGGCCATTCGAGTGCACTGAGCACCTCTTCACCAGCGAAACTGATCTCAATGCTAGGGACAGAgtaagaatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcgcagtgatgattgttctccacctgttcaatctcatattttgtttcagCTCCTCAGCACAGCGTTGCATGTGGCAGTGAGGACTCGGCCATTCGAGTGCACTGAGCACCTCTTCACCAGCGAAACTGATCTCAATGCTAGGGACAGAgtaagaatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcgcagtgatgattgttctccacctgttcaatctcatattttgtttcagCTCCTCAGCACAGCGTTGCATGTGGCAGTGAGGACTCGGCCATTCGAGTGCACTGAGCACCTCTTCACCAGCGAAACTGATCTCAATGCTAGGGACAGAgtaagaatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcgcagtgatgattgttctccacctgttcaatctcatattttgtttcagCTCCTCAGCACAGCGTTGCATGTGGCAGTGAGGACTCGGCCATTCGAGTGCACTGAGCACCTCTTCACCAGCGAAACTGATCTCAATGCTAGGGACAGAgtaagaatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from Exonerate_coding2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcgcagtgatgattgttctccacctgttcaatctcatattttgtttcagCTCCTCAGCACAGCGTTGCATGTGGCAGTGAGGACTCGGCCATTCGAGTGCACTGAGCACCTCTTCACCAGCGAAACTGATCTCAATGCTAGGGACAGAgtaagaatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcgcagtgatgattgttctccacctgttcaatctcatattttgtttcagCTCCTCAGCACAGCGTTGCATGTGGCAGTGAGGACTCGGCCATTCGAGTGCACTGAGCACCTCTTCACCAGCGAAACTGATCTCAATGCTAGGGACAGAgtaagaatttgacagatttgtgccaatgtcacctgctttgaagccaccca #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAA-GTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAACGTCTTGAGAA-AGCCCTTACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAACTCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAACGTCTTGAGAAAGCCCTTACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAACTCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAACGTCTTGAGAAAGCCCTTACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAACTCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from Spaln_nt2Genome CCCTTGGATGAA-GTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAACGTCTTGAG-AAAGCCCTTACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAACTCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from Pairagon CCCTTGGATGAA-GTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAACGTCTTGAG-AAAGCCCTTACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAACTCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAACGTCTTGAGAAAGCCCTTACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAACTCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAACGTCTTGAGAAAGCCCTTACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAACTCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG attcaatatggcatatatatacccaagtggttcctaatattaatttttagCCCTTAGATGAACGTCTTGAGAAAGCCCTTACAGGCCATCTGGAGGAGGTCGTTTTGGCTATGCTAAAAACTCCAGCACAGTTTGATGCAGATGAACTACATGGTGCCATGAAGgtaagttgttctaactgccttcctcctataacaggtgccaggagctttta #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAG-GACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGCGACTTGG-GTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from CESAR ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGCGACTTGGGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from Spaln_aa2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGCGACTTGGGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from Spaln_nt2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGCGACTTGGGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from Pairagon ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGCGACTTGGGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from Exonerate_protein2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGCGACTTGGGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from Exonerate_coding2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGCGACTTGGGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG gaccaaccttctctgtcaacattctctgtcagcctcactcctctccctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGTCACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCCAAGCGACTTGGGTCGCGGGCTGCCAATTGTACTCAGgtaggtgcaagggagagggtctaggttgagcaagtcacccagctgggaat #### BC049760_ID1437_2 --> 0 - 2 Original Alignment CCATCTTCAGAG-CCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCAT-GGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAacgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from CESAR CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAacgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Spaln_aa2Genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Spaln_nt2Genome CCATCTTCAGAGCC-AGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCA-TGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Pairagon CCATCTTCAGAG-CCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCA-TGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Exonerate_protein2genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Exonerate_coding2genome CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from GeneWise CCATCTTCAGAGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTG-GAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGCGAGAGTC-CAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from CESAR GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGCGAGAGTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from Spaln_aa2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGCGAGAGTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from Spaln_nt2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGCGAGAGTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from Pairagon GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTG-GAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGCGAGAGTC-CAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from Exonerate_protein2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGCGAGAGTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from Exonerate_coding2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGCGAGAGTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg Alignment from GeneWise GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgagctattaggggtggtaacccttctcttccctcccagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGCGAGAGTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagcggctacttcaagggtaaatgggactcaggggaagcagtagggtg #### Bbs1_ID729_5 --> 0 - 2 Original Alignment GACCAGATTGACCCCTTAACCCTG-AAGGAGATGCTGGAGGACATCag tggctgctgccagtgctcccaaactcacttccattctgttccattcttagGATCAT---GACCCCTTGACCCTGCAAAG-TATGCTGGAAGATATCaggtgcgtgttcacctttcctccttggtgcccctacatctgaaaactctcct Alignment from CESAR GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCag tggctgctgccagtgctcccaaactcacttccattctgttccattcttagGATCAT---GACCCCTTGACCCTGCAAAGTATGCTGGAAGATATCaggtgcgtgttcacctttcctccttggtgcccctacatctgaaaactctcct Alignment from Spaln_aa2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tggctgctgccagtgctcccaaactcacttccattctgttccattcttagGATCAT---GACCCCTTGACCCTGCAAAGTATGCTGGAAGATATCAGgtgcgtgttcacctttcctccttggtgcccctacatctgaaaactctcct Alignment from Spaln_nt2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tggctgctgccagtgctcccaaactcacttccattctgttccattcttagGATCA---TGACCCCTTGACCCTGCAAAGTATGCTGGAAGATATCAGgtgcgtgttcacctttcctccttggtgcccctacatctgaaaactctcct Alignment from Pairagon GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tggctgctgccagtgctcccaaactcacttccattctgttccattcttagGATCA---TGACCCCTTGACCCTGCAAAGTATGCTGGAAGATATCAGgtgcgtgttcacctttcctccttggtgcccctacatctgaaaactctcct Alignment from Exonerate_protein2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tggctgctgccagtgctcccaaactcacttccattctgttccattcttagGATCAT---GACCCCTTGACCCTGCAAAGTATGCTGGAAGATATCAGgtgcgtgttcacctttcctccttggtgcccctacatctgaaaactctcct Alignment from Exonerate_coding2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tggctgctgccagtgctcccaaactcacttccattctgttccattcttagGATCAT---GACCCCTTGACCCTGCAAAGTATGCTGGAAGATATCAGgtgcgtgttcacctttcctccttggtgcccctacatctgaaaactctcct Alignment from GeneWise tggctgctgccagtgctcccaaactcacttccattctgttccattcttaggatcatgaccccttgaccctgcaaagtatgctggaagatatcaggtgcgtgttcacctttcctccttggtgcccctacatctgaaaactctcct #### Bbs1_ID732_2 --> 1 - 1 Original Alignment cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAAC-ATCCACACCTTCTCCTCCTGCCTGt aatttatttcatcatggggcatatcttctggctgccctcattctctctagcAATGAAGCCAATTCTAAATGGCTGGACGCACACTATGACCCTATGGCCAACCATCCACA-TTTCTCCTCCTGTCTGtgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from CESAR cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGt aatttatttcatcatggggcatatcttctggctgccctcattctctctagcAATGAAGCCAATTCTAAATGGCTGGACGCACACTATGACCCTATGGCCAACCATCCACATTTCTCCTCCTGTCTGtgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from Spaln_aa2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATGACCCTATGGCCAACCATCCACATTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from Spaln_nt2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAAC-ATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATGACCCTATGGCCAACCATCCACA-TTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from Pairagon CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAA-CATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATGACCCTATGGCCAACCATCCACA-TTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from Exonerate_protein2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATGACCCTATGGCCAACCATCCACATTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from Exonerate_coding2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATGACCCTATGGCCAACCATCCACATTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from GeneWise AGCAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctAGCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATGACCCTATGGCCAACCATCCACATTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTC-TCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCCTCCAGCC-CCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTATACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCCTCCAGCCCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTATACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCCTCCAGCCCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTATACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTC-TCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCCTCCAGCC-CCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTATACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTT-CTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCCTCCAGCC-CCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTATACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCCTCCAGCCCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTATACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCCTCCAGCCCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTATACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG acatgcataagaaaatggcagcacctgtaatgtattctgcttgcttctagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCCTCCAGCCCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCGCTAGAAATCTATACTGACTATAGGGAGAATTCAgtacgtggcagacagacttgggaaacaactcttcaatgagccataattgt #### Bscl2_ID2426_9 --> 2 - 1 Original Alignment gtCAGGAATCTACCCAGCAGTCG-GATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg cactttaagtgagtaattgatgaaccgttctaagacttcctttgatacaggtCAGGAATCTACTCAGCAGTCACGATGTGATGG-GGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAggtgaggtcagttcctctacctcacatctttcctgacatacatctgcagtg Alignment from CESAR gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg cactttaagtgagtaattgatgaaccgttctaagacttcctttgatacaggtCAGGAATCTACTCAGCAGTCACGATGTGATGGGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAggtgaggtcagttcctctacctcacatctttcctgacatacatctgcagtg Alignment from Spaln_aa2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG cactttaagtgagtaattgatgaaccgttctaagacttcctttgatacagGTCAGGAATCTACTCAGCAGTCACGATGTGATGGGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtgaggtcagttcctctacctcacatctttcctgacatacatctgcagtg Alignment from Spaln_nt2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG cactttaagtgagtaattgatgaaccgttctaagacttcctttgatacagGTCAGGAATCTACTCAGCAGTCACGATGTGATGGGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtgaggtcagttcctctacctcacatctttcctgacatacatctgcagtg Alignment from Pairagon GTCAGGAATCTACCCAGCAGTCG-GATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG cactttaagtgagtaattgatgaaccgttctaagacttcctttgatacagGTCAGGAATCTACTCAGCAGTCACGATGTGATGG-GGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtgaggtcagttcctctacctcacatctttcctgacatacatctgcagtg Alignment from Exonerate_protein2genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG cactttaagtgagtaattgatgaaccgttctaagacttcctttgatacagGTCAGGAATCTACTCAGCAGTCACGATGTGATGGGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtgaggtcagttcctctacctcacatctttcctgacatacatctgcagtg Alignment from Exonerate_coding2genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG cactttaagtgagtaattgatgaaccgttctaagacttcctttgatacagGTCAGGAATCTACTCAGCAGTCACGATGTGATGGGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtgaggtcagttcctctacctcacatctttcctgacatacatctgcagtg Alignment from GeneWise GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG cactttaagtgagtaattgatgaaccgttctaagacttcctttgatacagGTCAGGAATCTACTCAGCAGTCACGATGTGATGGGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtgaggtcagttcctctacctcacatctttcctgacatacatctgcagtg #### Btaf1_ID7248_27 --> 0 - 2 Original Alignment GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTA-CAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGag tgctccacttacattttacataaatttcaaacgcactgactctcttacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACCAGTCCA-CTGCATTCTAGCAGGAGATCACTGTCAGaggtatccgaagacaaaacttgaaaatgatggccctaaatcctgatcaatgt Alignment from CESAR GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGag tgctccacttacattttacataaatttcaaacgcactgactctcttacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACCAGTCCACTGCATTCTAGCAGGAGATCACTGTCAGaggtatccgaagacaaaacttgaaaatgatggccctaaatcctgatcaatgt Alignment from Spaln_aa2Genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctccacttacattttacataaatttcaaacgcactgactctcttacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACCAGTCCACTGCATTCTAGCAGGAGATCACTGTCAGAGgtatccgaagacaaaacttgaaaatgatggccctaaatcctgatcaatgt Alignment from Spaln_nt2Genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctccacttacattttacataaatttcaaacgcactgactctcttacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACCAGTCCACTGCATTCTAGCAGGAGATCACTGTCAGAGgtatccgaagacaaaacttgaaaatgatggccctaaatcctgatcaatgt Alignment from Pairagon GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTA-CAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctccacttacattttacataaatttcaaacgcactgactctcttacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACCAGTCCA-CTGCATTCTAGCAGGAGATCACTGTCAGAGgtatccgaagacaaaacttgaaaatgatggccctaaatcctgatcaatgt Alignment from Exonerate_protein2genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctccacttacattttacataaatttcaaacgcactgactctcttacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACCAGTCCACTGCATTCTAGCAGGAGATCACTGTCAGAGgtatccgaagacaaaacttgaaaatgatggccctaaatcctgatcaatgt Alignment from Exonerate_coding2genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctccacttacattttacataaatttcaaacgcactgactctcttacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACCAGTCCACTGCATTCTAGCAGGAGATCACTGTCAGAGgtatccgaagacaaaacttgaaaatgatggccctaaatcctgatcaatgt Alignment from GeneWise GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctccacttacattttacataaatttcaaacgcactgactctcttacagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACCAGTCCACTGCATTCTAGCAGGAGATCACTGTCAGAGgtatccgaagacaaaacttgaaaatgatggccctaaatcctgatcaatgt #### C030046E11Rik_ID6307_21 --> 0 - 2 Original Alignment GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGT-AAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCCAAATTTG-CTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAaggtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from CESAR GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCCAAATTTGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAaggtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from Spaln_aa2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCCAAATTTGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from Spaln_nt2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCCAAATTTGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from Pairagon GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCCAAATTTGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from Exonerate_protein2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCCAAATTTGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from Exonerate_coding2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCCAAATTTGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca Alignment from GeneWise GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcttcaaattttaattccaacagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCCAAATTTGCTTACAAAAAACATTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtatgggaatagagagaagttatggctccagagctttcctacacttttca #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAG-CTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccaggcGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCCTGATGG-TCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccaggcGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCCTGATGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCCTGATGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCCTGATGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAG-CTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCCTGAT-GGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCCTGATGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCCTGATGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCCTGATGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAG---GACAGGGATGGA-CGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGACTGGATCA-GGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from CESAR TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGACTGGATCAGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Spaln_aa2Genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGACTGGATCAGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Spaln_nt2Genome TTTGACAAGGAC---AGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGACTGGATCAGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Pairagon TTTGACA---AGGACAGGGATGGAC-GGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCAT---AGACTTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGACTGGATCA-GGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Exonerate_protein2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGACTGGATCAGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Exonerate_coding2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGACTGGATCAGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAgagtttgatggtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from GeneWise TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACGAGTTTGTAATGATGCTATCTACAGGC gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGACTGGATCAGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGGTATGAAACCCTACATACACCTCACCcatgcctctattgccgtgaagatc #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGACACA-GACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagggTTTTCCAAACTTCTAGACACACGGCCTGG-TGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagggTTTTCCAAACTTCTAGACACACGGCCTGGTGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagGGTTTTCCAAACTTCTAGACACACGGCCTGGTGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagGGTTTTCCAAACTTCTAGACACACGGCCTGGTGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from Pairagon GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagGGTTTTCCAAACTTCTAGACACACGGCCTGGTGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagGGTTTTCCAAACTTCTAGACACACGGCCTGGTGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from Exonerate_coding2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagGGTTTTCCAAACTTCTAGACACACGGCCTGGTGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from GeneWise GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagGGTTTTCCAAACTTCTAGACACACGGCCTGGTGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAAC-CGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCCATA-CCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCCATACCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCCATACCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCCATACCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Pairagon CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCCATACCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCCATACCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Exonerate_coding2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCCATACCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCCATACCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa #### Capn1_ID1362_14 --> 0 - 0 Original Alignment AAAGTTCTCTCT-GAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTCGAAGAAG-GATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from CESAR AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTCGAAGAAGGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Spaln_aa2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTCGAAGAAGGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Spaln_nt2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTCGAAGAAGGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Pairagon AAAGTTCTCTCT-GAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTCGAAGAAG-GATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Exonerate_protein2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTCGAAGAAGGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Exonerate_coding2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTCGAAGAAGGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from GeneWise AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTCGAAGAAGGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCC-GCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTCGCTGTGCTGG-CCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTggtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCC-GCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTCGCTGTGCTGG-CCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTggtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTCGCTGTGCTGGCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGC-CGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTCGCTGTGCTGG-CCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTG---GCCAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGC-CGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTCGCTGTGCTGG-CCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTG---GCCAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTCGCTGTGCTGGCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTCGCTGTGCTGGCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTCGCTGTGCTGGCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCT-GTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTCGTCC-GCTGCCCTTGCCAggttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTCGTCCGCTGCCCTTGCCAggttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTCGTCCGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTCGTCCGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTCGTCCGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTCGTCCGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTCGTCCGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTCGTCCGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac #### Catsper1_ID932_9 --> 0 - 1 Original Alignment CAAGCTGCCCGGGTCCATGAGAAG-TTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGCTTGTTGGATG-CTCTCTGACAGATCTCAATAAGGCAggtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from CESAR CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGCTTGTTGGATGCTCTCTGACAGATCTCAATAAGGCAggtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from Spaln_aa2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGCTTGTTGGATGCTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from Spaln_nt2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGCTTGTTGGATGCTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from Pairagon CAAGCTGCCCGGGTCCATGAGAAG-TTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGCTTGTTGGATG-CTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from Exonerate_protein2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGCTTGTTGGATGCTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from Exonerate_coding2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGCTTGTTGGATGCTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from GeneWise CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGCTTGTTGGATGCTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACC-CTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCCTAGCTGGTG-GCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAggtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCCTAGCTGGTGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAggtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCCTAGCTGGTGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCCTAGCTGGTGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGA-CCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCCTAGCTGGT-GGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCCTAGCTGGTGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCCTAGCTGGTGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGACCCCTAGCTGGTGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTG-GAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtgagtatgctcagggtcaggtctctttcccttccccactaggGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTTCGAG---A-CATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTaagtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from CESAR GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgttagtatgctcagggtcaggtctctttcccttccccactaggGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTT---CGAGACATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTaagtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from Spaln_aa2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgagtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTT---CGAGACATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from Spaln_nt2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTG-GAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgagtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTTCGAGA----CATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from Pairagon GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGG-TGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgagtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTTCGAGA----CATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from Exonerate_protein2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgagtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTT---CGAGACATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from Exonerate_coding2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgagtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTT---CGAGACATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from GeneWise GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgagtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTT---CGAGACATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGT-GAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagaGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTCGAACGTGGGG-GCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagaGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTCGAACGTGGGGGCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTCGAACGTGGGGGCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGT-GAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGC------TGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTCGAACGTGGGG-GCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGT-GAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTCGAACGTGGGG-GCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTCGAACGTGGGGGCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTCGAACGTGGGGGCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG tcaccgctcttccgattgagcatgtgaaacatctatcattttaccctcagAGCCCAAATGTTACTGGCGGAGGTGTCACGAGGGTGTGGGGAGATCCAAGGTCGAACGTGGGGGCTGCGGGGCCGTCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGTCTGACAACTCAGTGTGAAgtaggttacatacagtgtgtatgtggcctggcgcactaatggaagccaag #### Ccdc88b_ID1829_20 --> 1 - 2 Original Alignment gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGG-CAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgagcataggctcccttctagctttttttttttctaggCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCCAGCGTG-TCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGaggtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from CESAR gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgagcataggctcccttctagctttttttttttctaggCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCCAGCGTGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGaggtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from Spaln_aa2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCCAGCGTGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from Spaln_nt2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCCAGCGTGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from Pairagon GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGG-CAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCCAGCGT-GTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from Exonerate_protein2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCCAGCGTGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from Exonerate_coding2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCCAGCGTGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from GeneWise GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCCAGCGTGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGG-GCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG---CTT---GCTGGGCGCACGACGGG-TGGCCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG---CTTGCTGGGCGCACGACGGGTGGCCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG---CTTGCTGGGCGCACGACGGGTGGCCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGG-GCGCGA--GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG---CTTG---CTGGGCGCACGACGGGTGGCCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGG---------------CCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGT------------------GCTTGCTGGGCGCACGACGGGTGGCCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG---CTTGCTGGGCGCACGACGGGTGGCCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG---CTTGCTGGGCGCACGACGGGTGGCCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgttcattagaattcctctcttccagCTGCATCAGTACCCGGTG---CTTGCTGGGCGCACGACGGGTGGCCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtcagtgaaaagatgggggattacccaagggataacagggctaacaactt #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAG-CTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctaggTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCCTGCAGGCAA-ATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from CESAR gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctaggTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCCTGCAGGCAAATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Spaln_aa2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCCTGCAGGCAAATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Spaln_nt2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCCTGCAGGCAAATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Pairagon GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAG-CTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCCTGCAGGCAA-ATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Exonerate_protein2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCCTGCAGGCAAATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Exonerate_coding2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCCTGCAGGCAAATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGGAGCAGCGTCTAGAAGCCGAGCCTGCAGGCAAATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAA-CTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACCTTC-GAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGggtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACCTTCGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGggtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACCTTCGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACCTTCGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACCTTCGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACCTTCGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACCTTCGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACCTTCGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAG-GTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagaGAAGAGAAGGCTGAGCAACTGCTAGACTCCCACGCAGAGCGTTCAG---T-GGATGCCGAAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from CESAR gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagaGAAGAGAAGGCTGAGCAACTGCTAGACTCCCACGCAGAG---CGTTCAGTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACTCCCACGCAGAG---CGTTCAGTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAG-GTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACTCCCACGCAGAGCGTTCAG----TGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from Pairagon GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAG-GTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACTCCCACGCAGAGCGTTCAG----TGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACTCCCACGCAGAG---CGTTCAGTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from Exonerate_coding2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACTCCCACGCAGAG---CGTTCAGTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagattctgcagttggcagacatctttttcatatacattctttcagAGAAGAGAAGGCTGAGCAACTGCTAGACTCCCACGCAGAG---CGTTCAGTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtgagctctagcttcttcccctaacacagcctccacaacactctatattg #### Ccdc88b_ID1844_5 --> 2 - 0 Original Alignment aaGAGGCAGTGGAC------------------------------------------------------GAGCTGGAAAGC-ATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG ttgttctctgccctatatccttattttggatcttatctccacctctttagagGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTGCTGGGGGCTTCAATACAGGTGAAGAGGGAGCTAGAAAGCCATCC-TAGGTTGTTGCTAGGGGCTTCAGTGCGGgtatgctcaggatggggaaaaggaatggagttcagacaggaagtgggacc Alignment from CESAR aaGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG ttgttctctgccctatatccttattttggatcttatctccacctctttagagGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTGCTGGGGGCTTCAATACAGgtgaagagggagctagaaagccatcctaggttgttgctaggggcttcagtgcgggtatgctcaggatggggaaaaggaatggagttcagacaggaagtgggacc Alignment from Spaln_aa2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG ttgttctctgccctatatccttattttggatcttatctccacctctttagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTGCTGGGGGCTTCAATACAGgtgaagagggagctagaaagccatcctaggttgttgctaggggcttcagtgcgggtatgctcaggatggggaaaaggaatggagttcagacaggaagtgggacc Alignment from Spaln_nt2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG ttgttctctgccctatatccttattttggatcttatctccacctctttagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTGCTGGGGGCTTCAATACAGgtgaagagggagctagaaagccatcctaggttgttgctaggggcttcagtgcgggtatgctcaggatggggaaaaggaatggagttcagacaggaagtgggacc Alignment from Pairagon AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG ttgttctctgccctatatccttattttggatcttatctccacctctttagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTGCTGGGGGCTTCAATACAGgtgaagagggagctagaaagccatcctaggttgttgctaggggcttcagtgcgggtatgctcaggatggggaaaaggaatggagttcagacaggaagtgggacc Alignment from Exonerate_protein2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG ttgttctctgccctatatccttattttggatcttatctccacctctttagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTGCTGGGGGCTTCAATACAGgtgaagagggagctagaaagccatcctaggttgttgctaggggcttcagtgcgggtatgctcaggatggggaaaaggaatggagttcagacaggaagtgggacc Alignment from Exonerate_coding2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG ttgttctctgccctatatccttattttggatcttatctccacctctttagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTGCTGGGGGCTTCAATACAGgtgaagagggagctagaaagccatcctaggttgttgctaggggcttcagtgcgggtatgctcaggatggggaaaaggaatggagttcagacaggaagtgggacc Alignment from GeneWise AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG ttgttctctgccctatatccttattttggatcttatctccacctctttagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTGCTGGGGGCTTCAATACAGgtgaagagggagctagaaagccatcctaggttgttgctaggggcttcagtgcgggtatgctcaggatggggaaaaggaatggagttcagacaggaagtgggacc #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGAC-CTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCCTCCAGA-TACAGGGTGCGAGCCCTTCTCAggtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCCTCCAGATACAGGGTGCGAGCCCTTCTCAggtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCCTCCAGATACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACC-TCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCCTCCAGA-TACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGA-CCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCCTCCAGAT-ACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCCTCCAGATACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Exonerate_coding2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCCTCCAGATACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCCTCCAGATACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTC-TTGGTGCAGTGTATCGAACGGCTGTTGct tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCCTTGGTGCAGT-TATCGAACGGCTATTGctgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCCTTGGTGCAGTTATCGAACGGCTATTGctgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCCTTGGTGCAGTTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTC-TTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCCTTGGTGCAGT-TATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTT-CTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCCTTGGTGCAGT-TATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCCTTGGTGCAGTTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCCTTGGTGCAGTTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from GeneWise -------------------------------------------------GATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT TGACGACTTAAGTGTTTCATTGTTGAGAACCCCTATTCTGCCTATTCCAGATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCCTTGGTGCAGTTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc #### Cd5_ID2994_4 --> 2 - 1 Original Alignment agCCCCAGAGAACGACACCTCCA-CCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg catgccctttgctccccacttcccacccgtcctttctccttaaaactcagaaCCCCAGAGAACAACACCTCCACCCCA-AACCACCCCACCCACCACTGTGCCTGAGCCCACAggtaggtcagtgtacagtccttgtagaaaaggcagaggatgaacttgtgta Alignment from CESAR agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg catgccctttgctccccacttcccacccgtcctttctccttaaaactcagaaCCCCAGAGAACAACACCTCCACCCCAAACCACCCCACCCACCACTGTGCCTGAGCCCACAggtaggtcagtgtacagtccttgtagaaaaggcagaggatgaacttgtgta Alignment from Spaln_aa2Genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catgccctttgctccccacttcccacccgtcctttctccttaaaactcagAACCCCAGAGAACAACACCTCCACCCCAAACCACCCCACCCACCACTGTGCCTGAGCCCACAGgtaggtcagtgtacagtccttgtagaaaaggcagaggatgaacttgtgta Alignment from Spaln_nt2Genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catgccctttgctccccacttcccacccgtcctttctccttaaaactcagAACCCCAGAGAACAACACCTCCACCCCAAACCACCCCACCCACCACTGTGCCTGAGCCCACAGgtaggtcagtgtacagtccttgtagaaaaggcagaggatgaacttgtgta Alignment from Pairagon AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catgccctttgctccccacttcccacccgtcctttctccttaaaactcagAACCCCAGAGAACAACACCTCCACCCCAAACCACCCCACCCACCACTGTGCCTGAGCCCACAGgtaggtcagtgtacagtccttgtagaaaaggcagaggatgaacttgtgta Alignment from Exonerate_protein2genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catgccctttgctccccacttcccacccgtcctttctccttaaaactcagAACCCCAGAGAACAACACCTCCACCCCAAACCACCCCACCCACCACTGTGCCTGAGCCCACAGgtaggtcagtgtacagtccttgtagaaaaggcagaggatgaacttgtgta Alignment from Exonerate_coding2genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catgccctttgctccccacttcccacccgtcctttctccttaaaactcagAACCCCAGAGAACAACACCTCCACCCCAAACCACCCCACCCACCACTGTGCCTGAGCCCACAGgtaggtcagtgtacagtccttgtagaaaaggcagaggatgaacttgtgta Alignment from GeneWise AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catgccctttgctccccacttcccacccgtcctttctccttaaaactcagAACCCCAGAGAACAACACCTCCACCCCAAACCACCCCACCCACCACTGTGCCTGAGCCCACAGgtaggtcagtgtacagtccttgtagaaaaggcagaggatgaacttgtgta #### Cd6_ID3012_12 --> 2 - 1 Original Alignment ggCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCT-CCAGCAGAACAGTTTGAATGTCCAg atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagggCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCCGGCAGAGC-GTTTGAATGTCCAggtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from CESAR ggCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagggCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCCGGCAGAGCGTTTGAATGTCCAggtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from Spaln_aa2Genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCCGGCAGAGCGTTTGAATGTCCAGgtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from Spaln_nt2Genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAG-CAGAACAGTTTGAATGTCCAG atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCCGGCAGAGC-GTTTGAATGTCCAGgtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from Pairagon GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCC-TCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCCGGCAGAGC-GTTTGAATGTCCAGgtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from Exonerate_protein2genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagcagGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCCGGCAGAGCGTTTGAATGTCCAGgtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise --GGGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtgcagttgggttcctggcaaagaattgtaagcgttgctcttgagCAGGGCCCTCAGCTGATGACAGCTCCAGCACCTCATCTGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCACCCGGCAGAGCGTTTGAATGTCCAGgtgagagcgttcagggatgggtcacagagaatgtgggtatgaaggaaatc #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAG-TGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGCTGGGAGATGC-GAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGCTGGGAGATGCGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGCTGGGAGATGCGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAG-TGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGCTGGGAGATGC-GAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAG-TGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGCTGGGAGATGC-GAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGCTGGGAGATGCGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGCTGGGAGATGCGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGCTGGGAGATGCGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCC-TTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGCTTCCAGG-TGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGCTTCCAGGTGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGCTTCCAGGTGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGC-CTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGCTTCCAGG-TGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGC-CTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGCTTCCAGG-TGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGCTTCCAGGTGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGCTTCCAGGTGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGCTTCCAGGTGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt #### Cdc42bpg_ID1575_5 --> 0 - 2 Original Alignment TACCTGGTGATGGACTACTATGCTGGCGGG-GACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACag gttgtcattagctgtaggattggatctagaattatttttttcttttccagTACCTGCTGATGGACTACTATGCTGGTGGCCGACCTTC-AACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACaggtgatcaagattgcgtgtctttgggattctcggactcatggcttctcatt Alignment from CESAR TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACag gttgtcattagctgtaggattggatctagaattatttttttcttttccagTACCTGCTGATGGACTACTATGCTGGTGGCCGACCTTCAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACaggtgatcaagattgcgtgtctttgggattctcggactcatggcttctcatt Alignment from Spaln_aa2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcattagctgtaggattggatctagaattatttttttcttttccagTACCTGCTGATGGACTACTATGCTGGTGGCCGACCTTCAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgatcaagattgcgtgtctttgggattctcggactcatggcttctcatt Alignment from Spaln_nt2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcattagctgtaggattggatctagaattatttttttcttttccagTACCTGCTGATGGACTACTATGCTGGTGGCCGACCTTCAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgatcaagattgcgtgtctttgggattctcggactcatggcttctcatt Alignment from Pairagon TACCTGGTGATGGACTACTATGCTGGCGG-GGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcattagctgtaggattggatctagaattatttttttcttttccagTACCTGCTGATGGACTACTATGCTGGTGGCCGACCTTC-AACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgatcaagattgcgtgtctttgggattctcggactcatggcttctcatt Alignment from Exonerate_protein2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcattagctgtaggattggatctagaattatttttttcttttccagTACCTGCTGATGGACTACTATGCTGGTGGCCGACCTTCAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgatcaagattgcgtgtctttgggattctcggactcatggcttctcatt Alignment from Exonerate_coding2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcattagctgtaggattggatctagaattatttttttcttttccagTACCTGCTGATGGACTACTATGCTGGTGGCCGACCTTCAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgatcaagattgcgtgtctttgggattctcggactcatggcttctcatt Alignment from GeneWise TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcattagctgtaggattggatctagaattatttttttcttttccagTACCTGCTGATGGACTACTATGCTGGTGGCCGACCTTCAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGTCCACAGgtgatcaagattgcgtgtctttgggattctcggactcatggcttctcatt #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTG-GACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagaGATGTGAAGCCAGACAACATTCTGCTGCGACA-GAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagaGATGTGAAGCCAGACAACATTCTGCTGCGACAGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAGACAACATTCTGCTGCGACAGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Spaln_nt2Genome GGATGTGAAGCCTGACAACATCCTGCTG-GACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAGACAACATTCTGCTGCGACA-GAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTG-GACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAGACAACATTCTGCTGCGACA-GAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAGACAACATTCTGCTGCGACAGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAGACAACATTCTGCTGCGACAGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from GeneWise -AGGGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagAAGAGATGTGAAGCCAGACAACATTCTGCTGCGACAGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTC-TCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagagACATTGAAGGACAGCAAGGCTTCCCTCCTCACAAGCTG-TGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagagACATTGAAGGACAGCAAGGCTTCCCTCCTCACAAGCTGTGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCCTCACAAGCTGTGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCCTCACAAGCTGTGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCT-CTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCCTCACAAGCTG-TGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCCTCACAAGCTGTGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCCTCACAAGCTGTGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCCTCACAAGCTGTGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGG-GGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAgggtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGGGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAgggtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGGGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGGGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGG-GGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGGGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGGGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccaaccctgacgctgcctccttcccagcagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGGGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaggaacatggtagttgcagccaggaagggacagggcaaggtcagcctg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAG-CGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagaATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCCAGCTGA-TCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from CESAR gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagaATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCCAGCTGATCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCCAGCTGATCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCG-GCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCCAGCTGA-TCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Pairagon GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAG-CGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCCAGCTGA-TCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCCAGCTGATCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCCAGCTGATCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCAGCCAGCTGATCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGC-AAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCCAAGCAAC-TTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtggtgagaatacacagccaggtggcacctctgatactgaggacccaggtcag Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCCAAGCAACTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtggtgagaatacacagccaggtggcacctctgatactgaggacccaggtcac Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCCAAGCAACTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcag Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCCAAGCAACTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcag Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAG-CAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCCAAGCAAC-TTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcag Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCCAAGCAACTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcag Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCCAAGCAACTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcag Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCCAAGCAACTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcag #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GTGCCGCGGCCCTCAGGT-GTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCCGTTCGTT-GGACTGGCAGCGGGTGTATGCTGCACTCAGTGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAaggtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from CESAR GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCCGTTCGTTGGACTGGCAGCGGGTGTATGCTGCACTCAGTGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAaggtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Spaln_aa2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCCGTTCGTTGGACTGGCAGCGGGTGTATGCTGCACTCAGTGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Spaln_nt2Genome GTGCCGCGGCCCTCAGGT-GTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCCGTTCGT-TGGACTGGCAGCGGGTGTATGCTGCACTCAGTGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Pairagon G------------------------------------------------------------------------------CTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTGTGGGAATGAGTGCCAGTCCAGCCCTTTCTTGGGGGTGGGGAAACAGGTGCGACAGCCATCATGCCGTTCGTTGGACTGGCAGCGGGTGTATGCTGCACTCAGTGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Exonerate_protein2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCCGTTCGTTGGACTGGCAGCGGGTGTATGCTGCACTCAGTGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Exonerate_coding2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCCGTTCGTTGGACTGGCAGCGGGTGTATGCTGCACTCAGTGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from GeneWise --------------------------------------------------------CGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTGTGGGAATGAGTGCCAGTCCAGCCCTTTCTTGGGGGTGGGGAAACAGGTGCGACAGCCATCATGCCGTTCGTTGGACTGGCAGCGGGTGTATGCTGCACTCAGTGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAA-TCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcaggGACCCCCAGTTTTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAACTCCAAGG-CCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcaggGACCCCCAGTTTTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAACTCCAAGGCCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAACTCCAAGGCCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAACTCCAAGGCCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Pairagon GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAACTCCAAGGCCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAACTCCAAGGCCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAACTCCAAGGCCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAACTCCAAGGCCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGG-CGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagaaAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCCGCCAGCTCT-CCGCAGCAAGAGCAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTaggtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from CESAR agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagaaAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCCGCCAGCTCTCCGCAGCAAGAGCAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTaggtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCCGCCAGCTCTCCGCAGCAAGAGCAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCCGCCAGCTCTCCGCAGCAAGAGCAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGG-CGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCCGCCAGCT-CTCCGCAGCAAGAGCAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCCGCCAGCTCTCCGCAGCAAGAGCAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCCGCCAGCTCTCCGCAGCAAGAGCAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCCGCCAGCTCTCCGCAGCAAGAGCAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct #### Cdca5_ID1429_3 --> 0 - 0 Original Alignment ACAACTCCAGCGGTCCCAGTCAGAAAGGCC-ATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG taaggctttgatttaagcctattaaggactgacggttctttcattttcagACAACTCCCACAGTCTCAGTTAGAAAAGCCCATCATCT-GAAAAAGATTGTAGCCCATGCAGTGGAGgtatgcggctgggagataactttgggaatgagatgtcagaacaggcctta Alignment from CESAR ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG taaggctttgatttaagcctattaaggactgacggttctttcattttcagACAACTCCCACAGTCTCAGTTAGAAAAGCCCATCATCTGAAAAAGATTGTAGCCCATGCAGTGGAGgtatgcggctgggagataactttgggaatgagatgtcagaacaggcctta Alignment from Spaln_aa2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG taaggctttgatttaagcctattaaggactgacggttctttcattttcagACAACTCCCACAGTCTCAGTTAGAAAAGCCCATCATCTGAAAAAGATTGTAGCCCATGCAGTGGAGgtatgcggctgggagataactttgggaatgagatgtcagaacaggcctta Alignment from Spaln_nt2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG taaggctttgatttaagcctattaaggactgacggttctttcattttcagACAACTCCCACAGTCTCAGTTAGAAAAGCCCATCATCTGAAAAAGATTGTAGCCCATGCAGTGGAGgtatgcggctgggagataactttgggaatgagatgtcagaacaggcctta Alignment from Pairagon ACAACTCCAGCGGTCCCAGTCAGAAAGG-CCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG taaggctttgatttaagcctattaaggactgacggttctttcattttcagACAACTCCCACAGTCTCAGTTAGAAAAGCCCATCATC-TGAAAAAGATTGTAGCCCATGCAGTGGAGgtatgcggctgggagataactttgggaatgagatgtcagaacaggcctta Alignment from Exonerate_protein2genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG taaggctttgatttaagcctattaaggactgacggttctttcattttcagACAACTCCCACAGTCTCAGTTAGAAAAGCCCATCATCTGAAAAAGATTGTAGCCCATGCAGTGGAGgtatgcggctgggagataactttgggaatgagatgtcagaacaggcctta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG taaggctttgatttaagcctattaaggactgacggttctttcattttcagACAACTCCCACAGTCTCAGTTAGAAAAGCCCATCATCTGAAAAAGATTGTAGCCCATGCAGTGGAGgtatgcggctgggagataactttgggaatgagatgtcagaacaggcctta #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGG-CCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCCA-CTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAggtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCCACTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAggtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCCACTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCCACTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from Pairagon GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCCACTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCCACTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCCACTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggcccccattggggtcctatatcaagttccttccatttgtttttgcagGCAATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTTCACCGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCCACTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtgagtgaagccatgggtaaactataacagaacagtgcagtaaggaagat #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCA-AATTGTCCAATTGGAGATGGAGGTTTAGAAa gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAATCAACCTCTCTGGTGCACTTGTCTCTTGCACAATTGCCCAA-TGGAGATGGAGGTTTAGAAagtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from CESAR GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAATCAACCTCTCTGGTGCACTTGTCTCTTGCACAATTGCCCAATGGAGATGGAGGTTTAGAAagtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAATCAACCTCTCTGGTGCACTTGTCTCTTGCACAATTGCCCAATGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAATCAACCTCTCTGGTGCACTTGTCTCTTGCACAATTGCCCAATGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from Pairagon GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCA-AATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAATCAACCTCTCTGGTGCACTTGTCTCTTGCACAATTGCCCAA-TGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAATCAACCTCTCTGGTGCACTTGTCTCTTGCACAATTGCCCAATGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAATCAACCTCTCTGGTGCACTTGTCTCTTGCACAATTGCCCAATGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtggggagatacctaatacctgacctttcttatacctttgcagGGACTGAGTAAATCAACCTCTCTGGTGCACTTGTCTCTTGCACAATTGCCCAATGGAGATGGAGGTTTAGAAAgtgagttgagtaatttaacactcatcttggtaggctggtctgatgtctca #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATC-TATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcaggGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCCTATGCAAGCT-CAAGGATGCCATCAAGAGGAAGCTGACAggtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from CESAR gGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcaggGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCCTATGCAAGCTCAAGGATGCCATCAAGAGGAAGCTGACAggtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCCTATGCAAGCTCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCCTATGCAAGCTCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Pairagon GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGAT-CTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCCTATGCAAGCT-CAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCCTATGCAAGCTCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCCTATGCAAGCTCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from GeneWise GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCCTATGCAAGCTCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTAT-TGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATCTGGAGCT-TGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATCTGGAGCTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATCTGGAGCTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATCTGGAGCTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTAT-TGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATCTGGAGC-TTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATCTGGAGCTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATCTGGAGCTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATCTGGAGCTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGC-GAGCTGATTAGCTACCTCACAa agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagccGCTGGTTTGTCCTCCATCCCAGGCCCAGCAGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTCGAGC-GATTAGCTACCTCACAagttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagccGCTGGTTTGTCCTCCATCCCAGGCCCAGCAGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTCGAGCGATTAGCTACCTCACAagttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCAGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTCGAGCGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCAGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTCGAGCGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAG-CGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCAGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTCGAGC-GATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCAGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTCGAGCGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCAGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTCGAGCGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCAGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTCGAGCGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca #### Col17a1_ID10276_46 --> 2 - 1 Original Alignment gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCT-GGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccaggtGCTGGCATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTCGGAC-ACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAggtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from CESAR gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccaggtGCTGGCATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTCGGACACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAggtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Spaln_aa2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTCGGACACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Spaln_nt2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTCGGACACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Pairagon GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTCGGACACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Exonerate_protein2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTCGGACACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Exonerate_coding2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTCGGACACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from GeneWise GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTCGGACACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCC-TCAGAAGATATCTTGGCCATGCTGCGAc ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagcaTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCCTCAGAAG-TATCTTGGCCATGCTGCGAcgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagcaTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCCTCAGAAGTATCTTGGCCATGCTGCGAcgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCCTCAGAAGTATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCCTCAGAAGTATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCT-CCTCAGAAGATATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCCTCAGAAG-TATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCCTCAGAAGTATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCCTCAGAAGTATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCCTCAGAAGTATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc #### Col17a1_ID10282_40 --> 2 - 1 Original Alignment aaACCTTCTTCACTGGCCCTCCAGGTCCA-CCCGGCCCCCCAGGTCCCAAGGGAGACCAAg cattgggaaacatcccatcatttacacccagcagctttctttctctttagaaACCTTCTTCAGGGGACCTCCAGGTCCACCCTGGCC-CCCAGGTCCAAAGGGGGACCAAggtaagagcagtaactcgaagcacctcaatcaagtgtgatgtttctctact Alignment from CESAR aaACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg cattgggaaacatcccatcatttacacccagcagctttctttctctttagaaACCTTCTTCAGGGGACCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAGGGGGACCAAggtaagagcagtaactcgaagcacctcaatcaagtgtgatgtttctctact Alignment from Spaln_aa2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG cattgggaaacatcccatcatttacacccagcagctttctttctctttagAAACCTTCTTCAGGGGACCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAGGGGGACCAAGgtaagagcagtaactcgaagcacctcaatcaagtgtgatgtttctctact Alignment from Spaln_nt2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG cattgggaaacatcccatcatttacacccagcagctttctttctctttagAAACCTTCTTCAGGGGACCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAGGGGGACCAAGgtaagagcagtaactcgaagcacctcaatcaagtgtgatgtttctctact Alignment from Pairagon AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG cattgggaaacatcccatcatttacacccagcagctttctttctctttagAAACCTTCTTCAGGGGACCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAGGGGGACCAAGgtaagagcagtaactcgaagcacctcaatcaagtgtgatgtttctctact Alignment from Exonerate_protein2genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG cattgggaaacatcccatcatttacacccagcagctttctttctctttagAAACCTTCTTCAGGGGACCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAGGGGGACCAAGgtaagagcagtaactcgaagcacctcaatcaagtgtgatgtttctctact Alignment from Exonerate_coding2genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG cattgggaaacatcccatcatttacacccagcagctttctttctctttagAAACCTTCTTCAGGGGACCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAGGGGGACCAAGgtaagagcagtaactcgaagcacctcaatcaagtgtgatgtttctctact Alignment from GeneWise AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG cattgggaaacatcccatcatttacacccagcagctttctttctctttagAAACCTTCTTCAGGGGACCTCCAGGTCCACCCTGGCCCCCAGGTCCAAAGGGGGACCAAGgtaagagcagtaactcgaagcacctcaatcaagtgtgatgtttctctact #### Col17a1_ID10283_39 --> 2 - 1 Original Alignment ggGAAGGCGTACCAGGCCCACCCGGG-CCACCAGGATCCTTCCTGACTGACTCAg atccactggtgaggttattgtctcgtaagcctctgtgtgtctgtccccaggcGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGAT-TTTTTTGACTGACTCAggtatcttggatccaatcacaccttttatatcaatccaactgcactgacca Alignment from CESAR ggGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg atccactggtgaggttattgtctcgtaagcctctgtgtgtctgtccccaggcGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATTTTTTTGACTGACTCAggtatcttggatccaatcacaccttttatatcaatccaactgcactgacca Alignment from Spaln_aa2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggttattgtctcgtaagcctctgtgtgtctgtccccagGCGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATTTTTTTGACTGACTCAGgtatcttggatccaatcacaccttttatatcaatccaactgcactgacca Alignment from Spaln_nt2Genome GGGAAGGCGTACCAGGCCCACCCGGGCC-ACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggttattgtctcgtaagcctctgtgtgtctgtccccagGCGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGAT-TTTTTTGACTGACTCAGgtatcttggatccaatcacaccttttatatcaatccaactgcactgacca Alignment from Pairagon GGGAAGGCGTACCAGGCCCACCCGGG-CCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggttattgtctcgtaagcctctgtgtgtctgtccccagGCGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGAT-TTTTTTGACTGACTCAGgtatcttggatccaatcacaccttttatatcaatccaactgcactgacca Alignment from Exonerate_protein2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggttattgtctcgtaagcctctgtgtgtctgtccccagGCGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATTTTTTTGACTGACTCAGgtatcttggatccaatcacaccttttatatcaatccaactgcactgacca Alignment from Exonerate_coding2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggttattgtctcgtaagcctctgtgtgtctgtccccagGCGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATTTTTTTGACTGACTCAGgtatcttggatccaatcacaccttttatatcaatccaactgcactgacca Alignment from GeneWise GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggttattgtctcgtaagcctctgtgtgtctgtccccagGCGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATTTTTTTGACTGACTCAGgtatcttggatccaatcacaccttttatatcaatccaactgcactgacca #### Col17a1_ID10284_38 --> 2 - 1 Original Alignment ggCCTTCCATCCCAGGCCCGCCA-GGACCCAGAGGTCCACCAg aagtggggagaatcagcctccaagggcagtgtctggctctggtcggtcagggCCTTCCATTCCAGGCCCACCACGGAC-CCGAAGTCCGCCGggtgagtgctgaactgttttcacataggagggggcaaggactggggtagca Alignment from CESAR ggCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAg aagtggggagaatcagcctccaagggcagtgtctggctctggtcggtcagggCCTTCCATTCCAGGCCCACCACGGACCCGAAGTCCGCCGggtgagtgctgaactgttttcacataggagggggcaaggactggggtagca Alignment from Spaln_aa2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG aagtggggagaatcagcctccaagggcagtgtctggctctggtcggtcagGGCCTTCCATTCCAGGCCCACCACGGACCCGAAGTCCGCCGGgtgagtgctgaactgttttcacataggagggggcaaggactggggtagca Alignment from Spaln_nt2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG aagtggggagaatcagcctccaagggcagtgtctggctctggtcggtcagGGCCTTCCATTCCAGGCCCACCACGGACCCGAAGTCCGCCGGgtgagtgctgaactgttttcacataggagggggcaaggactggggtagca Alignment from Pairagon GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG aagtggggagaatcagcctccaagggcagtgtctggctctggtcggtcagGGCCTTCCATTCCAGGCCCACCACGGACCCGAAGTCCGCCGGgtgagtgctgaactgttttcacataggagggggcaaggactggggtagca Alignment from Exonerate_protein2genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG aagtggggagaatcagcctccaagggcagtgtctggctctggtcggtcagGGCCTTCCATTCCAGGCCCACCACGGACCCGAAGTCCGCCGGgtgagtgctgaactgttttcacataggagggggcaaggactggggtagca Alignment from Exonerate_coding2genome aagtggggagaatcagcctccaagggcagtgtctggctctggtcggtcagggccttccattccaggcccaccacggacccgaagtccgccgggtgagtgctgaactgttttcacataggagggggcaaggactggggtagca Alignment from GeneWise GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG aagtggggagaatcagcctccaagggcagtgtctggctctggtcggtcagGGCCTTCCATTCCAGGCCCACCACGGACCCGAAGTCCGCCGGgtgagtgctgaactgttttcacataggagggggcaaggactggggtagca #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGAGGTCCCCCTGGCCCA-CCTGGCCCACGAGGGCCACCAg caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagaaGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCCTGGAC-ACGAGGGCCACCAggtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from CESAR aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagaaGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCCTGGACACGAGGGCCACCAggtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCCTGGACACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCCTGGACACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Pairagon AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCCTGGACACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Exonerate_protein2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCCTGGACACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCCTGGACACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from GeneWise AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCCTGGACACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag #### Col17a1_ID10288_34 --> 2 - 1 Original Alignment agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCT-CCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg tgggttatgataccttcacaggacatgttctcctttgtttctatttatagagGGATCATCAACAATCACTGTGCCTGGACCTCCAGGGCCTCCCTG-TGCCATGGGTCCCCCGGGGCCTCCAGGGACACCTggtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from CESAR agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg tgggttatgataccttcacaggacatgttctcctttgtttctatttatagagGGATCATCAACAATCACTGTGCCTGGACCTCCAGGGCCTCCCTGTGCCATGGGTCCCCCGGGGCCTCCAGGGACACCTggtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from Spaln_aa2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTGGACCTCCAGGGCCTCCCTGTGCCATGGGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from Spaln_nt2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTGGACCTCCAGGGCCTCCCTGTGCCATGGGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from Pairagon AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTGGACCTCCAGGGCCTCCCTGTGCCATGGGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from Exonerate_protein2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTGGACCTCCAGGGCCTCCCTGTGCCATGGGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from Exonerate_coding2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTGGACCTCCAGGGCCTCCCTGTGCCATGGGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat Alignment from GeneWise AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tgggttatgataccttcacaggacatgttctcctttgtttctatttatagAGGGATCATCAACAATCACTGTGCCTGGACCTCCAGGGCCTCCCTGTGCCATGGGTCCCCCGGGGCCTCCAGGGACACCTGgtaagtctattctcattttctccgacaaatcagcagcaggctgtgtaaat #### Col17a1_ID10301_21 --> 2 - 1 Original Alignment gtATCCCTGGGCCCCTG-GGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtaggtATTCCTGGGCCATTGCGGCCACCCTG-CCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTggtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from CESAR gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtaggtATTCCTGGGCCATTGCGGCCACCCTGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTggtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from Spaln_aa2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtagGTATTCCTGGGCCATTGCGGCCACCCTGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from Spaln_nt2Genome GTATCCCTGGGCCCCTG-GGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtagGTATTCCTGGGCCATTGCGGCCACCCT-GCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from Pairagon GTATCCCTGGGCCCCTG-GGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtagGTATTCCTGGGCCATTGCGGCCACCCT-GCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from Exonerate_protein2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtagGTATTCCTGGGCCATTGCGGCCACCCTGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from Exonerate_coding2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtagGTATTCCTGGGCCATTGCGGCCACCCTGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from GeneWise CATGGGGAGTCAAGGACCTAAAGGAGACCGAGGCCTTCCTGGGACCCCAGGTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG CGCAGCATCAAGAGGAAATCCAGACTAATCTGGTCTTTGGCCTCCTGTAGGTATTCCTGGGCCATTGCGGCCACCCTGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCG-ACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCACACAGTGT-TGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCACACAGTGTTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCACACAGTGTTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCG-ACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCACACAGTGT-TGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCG-ACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCACACAGTGT-TGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCACACAGTGTTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCACACAGTGTTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCACACAGTGTTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAG-CCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCCAGTAG-TGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAggtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC---AAG---CGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCCAGTAGTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAggtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCCAGTAGTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCC-AGTAGTGGTGCTCGAGGGGCATACCA---AGCGC---GTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCCAGTAGT-GTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAG-CCAGTAGTGGTGCTCGAGGGGCATACCA------AGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCCAGTAGT-GTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCCAGTAGTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCCAGTAGTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCCAGTAGTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg #### Coro1b_ID355_5 --> 0 - 0 Original Alignment GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACA-GGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACACGGTTTCA-CCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from CESAR GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACACGGTTTCACCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Spaln_aa2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACACGGTTTCACCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Spaln_nt2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACACGGTTTCACCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Pairagon GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACACGGTTTCACCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Exonerate_protein2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACACGGTTTCACCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Exonerate_coding2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACACGGTTTCACCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from GeneWise GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACACGGTTTCACCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCG-CTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagatGCAGAGGACACGCGGGTGCCTGGTGCACCTCCTGT-CGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGaggtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagatGCAGAGGACACGCGGGTGCCTGGTGCACCTCCTGTCGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGaggtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACCTCCTGTCGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACCTCCTGTCGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCG-CTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACCTCCTGT-CGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACCTCCTGTCGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACCTCCTGTCGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGGTGCCTGGTGCACCTCCTGTCGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCA-GGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAA-CACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from CESAR AGCGCAGAGCCAGGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAACACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAACACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from Spaln_nt2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAACACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from Pairagon AGCGCAGAGCCAGGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAACACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from Exonerate_protein2genome cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagagcgcagaaccacggaacacaccccggcaggtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from Exonerate_coding2genome cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagagcgcagaaccacggaacacaccccggcaggtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from GeneWise AGCGCAGAGCCAGGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAACACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAG-TTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagagCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTATCAGCTTTG-GGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagagCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTATCAGCTTTGGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTATCAGCTTTGGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTATCAGCTTTGGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTATCAGCTTTGGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTATCAGCTTTGGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTATCAGCTTTGGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCTGACGGCACGGGACTATCAGCTTTGGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTC-TCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCCTCCCTGG-AGCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCCTCCCTGGAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCCTCCCTGGAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCCTCCCTGGAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCCTCCCTGGAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCCTCCCTGGAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCCTCCCTGGAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCCTCCCTGGAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACTTTCAGCTCATTC-CTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagagTTTAGAAATGCAACCTTTGGCTCATTCCCTACCACTGC-GGACAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagagTTTAGAAATGCAACCTTTGGCTCATTCCCTACCACTGCGGACAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCCTACCACTGCGGACAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCCTACCACTGCGGACAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from Pairagon AGTTTAGAAATGCGACTTTCAGCTCATTCCTT-CCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCCTACCACTG-CGGACAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCCTACCACTGCGGACAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCCTACCACTGCGGACAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCCTACCACTGCGGACAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAA-GGGGCTGTCACTGAAGTG------AAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagagGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAACGGGGCTG-CACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagagGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAACGGGGCTGCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAGGG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAACGGGGCTGCACTGAAGTTGAAGTGAAGAACCAGGTgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAA-GGGGCTGTCACTGAAGT------GAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAACGGGGCTG-CACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCAC------TGAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAACGGGGCTGCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAACGGGGCTGCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAACGGGGCTGCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAGGG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAACGGGGCTGCACTGAAGTTGAAGTGAAGAACCAGGTgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGACAAGGTGGACAAGGCC-TGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaacccctccagagggtcccttggctctgttttctggttgtctagagCTCTCGGACTGTGGCAAGGAGGACAAGGCCCTGCTTGG-TGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGggtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from CESAR agCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaacccctccagagggtcccttggctctgttttctggttgtctagagCTCTCGGACTGTGGCAAGGAGGACAAGGCCCTGCTTGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGggtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Spaln_aa2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGGAGGACAAGGCCCTGCTTGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGGAGGACAAGGCCCTGCTTGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Pairagon AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGGAGGACAAGGCCCTGCTTGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGGAGGACAAGGCCCTGCTTGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGGAGGACAAGGCCCTGCTTGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from GeneWise AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGGAGGACAAGGCCCTGCTTGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCAT-GTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccaggaGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATCGTTCAGACCT-TAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATagtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccaggaGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATCGTTCAGACCTTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATagtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATCGTTCAGACCTTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATCGTTCAGACCTTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCAT-GTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATCGTTCAGACCT-TAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATCGTTCAGACCTTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATCGTTCAGACCTTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaacctctcttggcttcccttccagGAGGGCTGGAGACAGAGGATGACTACGGCTATCAGGGTCATCGTTCAGACCTTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaagggagggtccctgtaggtgggtcagggttaataccactgggccaca #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTGGCCCAGAAAGGA-CCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagagAGAGCAGCCTGGCTGGCCCAGAAAGGACCCTATCTCAG-TGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from CESAR agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagagAGAGCAGCCTGGCTGGCCCAGAAAGGACCCTATCTCAGTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from Spaln_aa2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCCTATCTCAGTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACC-TATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCCTATCTCAG-TGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from Pairagon AGATAGCAGCCTGGCTGGCCCAGAAAGGA-CCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCCTATCTCAG-TGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCCTATCTCAGTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCCTATCTCAGTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from GeneWise AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCCTATCTCAGTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCT-CGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCCGGCAAG-GGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTG------CTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCCGGCAAGGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCCGGCAAGGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCCGGCAAGGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCT-CGGCAAGTGGACCACTCTG------TCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCCGGCAAG-GGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCCGGCAAGGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCCGGCAAGGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTG------GTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCCGGCAAGGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct #### Ctsw_ID1020_6 --> 2 - 1 Original Alignment agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGC-AATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagagCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCCAATG-TGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATagtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from CESAR agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagagCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATagtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from Spaln_aa2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from Spaln_nt2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from Pairagon AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from Exonerate_protein2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from Exonerate_coding2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from GeneWise -------------------------------------------------GAGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA TGTGTCAAGCCATGGTATCTGCTCACATATCATTCTGGTTTTACCCACAGAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAA-AGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagagGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAACAGGA-CCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagagGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAACAGGACCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactt Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAACAGGACCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAACAGGACCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAACAGGACCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAACAGGACCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAACAGGACCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAACAGGACCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATA-GAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCAGGGTTGGAGACATCTTA------GGCATACGAGACCACTA-CTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from CESAR GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCAGGGTTGGAGACATCTTA------GGCATACGAGACCACTACTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCAGGGTTGGAGACATCTTA------GGCATACGAGACCACTACTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATA-GAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCAGGGTTGGAGACATCTT------AGGCATACGAGACCACTA-CTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from Pairagon GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATA-GAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCAGGGTTGGAGACATCTT------AGGCATACGAGACCACTA-CTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCAGGGTTGGAGACATCTTA------GGCATACGAGACCACTACTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCAGGGTTGGAGACATCTTA------GGCATACGAGACCACTACTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca Alignment from GeneWise GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttgatagtcaggtggtgttcatgctcttgtgtttgtcgctctgtgtctagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGGCAAGACCCAAGTGTGTTCTCAGATAAGCACATCCTTGTCAGGGTTGGAGACATCTTAGGC------ATACGAGACCACTACTCTGTGCTGAACTGGATACTGGCTTTCTTAGTGCATAATCCTGAGgtgagagtctctgcgactctctactagccaaccactatggggagcaggca #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTT-GGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTCGGGCGGC-AACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTCGGGCGGCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTCGGGCGGCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTCGGGCGGCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTCGGGCGGCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTCGGGCGGCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTCGGGCGGCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTCGGGCGGCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTC-CAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCCAGTGTT-CGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCCAGTGTTCGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCCAGTGTTCGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCCAGTGTTCGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACT-CCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCCAGTGTT-CGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCCAGTGTTCGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCCAGTGTTCGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCCAGTGTTCGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact #### Cyp26a1_ID7416_4 --> 0 - 0 Original Alignment GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACA-GAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCGGCTTCAGGCAACACGAGCCAGATG-GGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from CESAR GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACA-GAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCGGCTTCAGGCAACACGAGCCAGATG-GGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from Spaln_aa2Genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCGGCTTCAGGCAACACGAGCCAGATGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from Spaln_nt2Genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACA-GAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTTA---CACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCGGCTTCAGGCAACACGAGCCAGAT-GGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGA-AGGTGAGGAA--TTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from Pairagon GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACA-GAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTTA---CACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCGGCTTCAGGCAACACGAGCCAGAT-GGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGA-----------------------AGgtgaggaattggacacacaggtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from Exonerate_protein2genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCGGCTTCAGGCAACACGAGCCAGATGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from Exonerate_coding2genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCGGCTTCAGGCAACACGAGCCAGATGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg Alignment from GeneWise GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacgggcaaaggcagttgactaactttttgacccctccccttacagGGTGTT---ACACGCAACCTTATACAGGCACGCATTGAGGAGAACATTCATGCAAATATCCGCCGGCTTCAGGCAACACGAGCCAGATGGGGTTGCAAAGATGCATTGCAGCTTCTGATTGAGCACTCGTGGGAA---GGTGAGGAATTGGACACACAGgtataaaggaatctcaaaaggtgtcaaaggccagctctgtattgtccagg #### Cyp26a1_ID7418_6 --> 0 - 0 Original Alignment GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATAC-ACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACCACTGGGTGTG-CATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from CESAR GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACCACTGGGTGTGCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from Spaln_aa2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACCACTGGGTGTGCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from Spaln_nt2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACCACTGGGTGTGCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from Pairagon GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATA-CACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACCACTGGGTGTG-CATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from Exonerate_protein2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACCACTGGGTGTGCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from Exonerate_coding2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACCACTGGGTGTGCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct Alignment from GeneWise GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacacaaggatcccatcaccgaatcaaatctttttgaactttcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACCACTGGGTGTGCATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaagagcactccttgtccactggacccagcctttgctcttgtccactct #### Cyp2c37_ID7839_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCT-GGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCAGGAGTTTGCTCGGGAGGG-AAGCTTTCCAGTTTTTGATAAAGCCACCAATGGAATGggtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCAGGAGTTTGCTCGGGAGGGAAGCTTTCCAGTTTTTGATAAAGCCACCAATGGAATGggtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCAGGAGTTTGCTCGGGAGGGAAGCTTTCCAGTTTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCAGGAGTTTGCTCGGGAGGGAAGCTTTCCAGTTTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCAGGAGTTTGCTCGGGAGGGAAGCTTTCCAGTTTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCAGGAGTTTGCTCGGGAGGGAAGCTTTCCAGTTTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCAGGAGTTTGCTCGGGAGGGAAGCTTTCCAGTTTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaggaccaggtggcattttcctaatattgcaacccttcttattgttcagCTATCAAAAGTTTATGGGCCTGTGTATAGTCTCTATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGAATATGAGGCAGTGAAGGAGGCTCTGGTT---TATGGGCAGGAGTTTGCTCGGGAGGGAAGCTTTCCAGTTTTTGATAAAGCCACCAATGGAATGGgtgagtattcatgtatatagtgagctaaaggatggggagcagaagtaaac #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGA-AGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaaaatgcagtcaaatcttcctaatattggaggtttggtttttttccagCTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGACAGAGGAA-ACTACCAGTTTTTGATAAAGCTACTAATGGAATGggtgagcatacctgtgcagagtagcgaagtgaaaagataggagagcccaat Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaaaatgcagtcaaatcttcctaatattggaggtttggtttttttccagCTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGACAGAGGAAACTACCAGTTTTTGATAAAGCTACTAATGGAATGggtgagcatacctgtgcagagtagcgaagtgaaaagataggagagcccaat Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagtcaaatcttcctaatattggaggtttggtttttttccagCTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGACAGAGGAAACTACCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatacctgtgcagagtagcgaagtgaaaagataggagagcccaat Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagtcaaatcttcctaatattggaggtttggtttttttccagCTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGACAGAGGAAACTACCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatacctgtgcagagtagcgaagtgaaaagataggagagcccaat Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGA-AGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagtcaaatcttcctaatattggaggtttggtttttttccagCTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGACAGAGGAA-ACTACCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatacctgtgcagagtagcgaagtgaaaagataggagagcccaat Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagtcaaatcttcctaatattggaggtttggtttttttccagCTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGACAGAGGAAACTACCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatacctgtgcagagtagcgaagtgaaaagataggagagcccaat Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagtcaaatcttcctaatattggaggtttggtttttttccagCTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGACAGAGGAAACTACCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatacctgtgcagagtagcgaagtgaaaagataggagagcccaat Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagtcaaatcttcctaatattggaggtttggtttttttccagCTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGACAGAGGAAACTACCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatacctgtgcagagtagcgaagtgaaaagataggagagcccaat #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGAC-CGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aaaagataggagagcccaattccgtctactgtctgtccctttgatttcaggaATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCCGTC-TCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aaaagataggagagcccaattccgtctactgtctgtccctttgatttcaggaATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCCGTCTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCCGTCTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCCGTCTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCCGTCTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCCGTCTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCCGTCTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCCGTCTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAG-GACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtaaccagctcactctgttttacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCGTTC-AGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAG-GACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtaaccagctcactctgttttacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCGTTC-AGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAG-GACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCGTTC-AGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCGTTCAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct #### Dagla_ID2759_11 --> 0 - 0 Original Alignment GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGA-CACAGAGGCACCTGGTTGGGCCACAAG tggtatactctctttggactccctcttatgttgttgttttacatttaaagGACGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGCGGAGGCACCACAGAGGCA-CTGGTTGGGCCACAAGgtaaggagttcaaggcgctgaggttcccccaccttgcccttcccctgcta Alignment from CESAR GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtatactctctttggactccctcttatgttgttgttttacatttaaagGACGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGCGGAGGCACCACAGAGGCACTGGTTGGGCCACAAGgtaaggagttcaaggcgctgaggttcccccaccttgcccttcccctgcta Alignment from Spaln_aa2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtatactctctttggactccctcttatgttgttgttttacatttaaagGACGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGCGGAGGCACCACAGAGGCACTGGTTGGGCCACAAGgtaaggagttcaaggcgctgaggttcccccaccttgcccttcccctgcta Alignment from Spaln_nt2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGAC-ACAGAGGCACCTGGTTGGGCCACAAG tggtatactctctttggactccctcttatgttgttgttttacatttaaagGACGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGCGGAGGCACCACAGAGGCA-CTGGTTGGGCCACAAGgtaaggagttcaaggcgctgaggttcccccaccttgcccttcccctgcta Alignment from Pairagon GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGA-CACAGAGGCACCTGGTTGGGCCACAAG tggtatactctctttggactccctcttatgttgttgttttacatttaaagGACGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGCGGAGGCACCACAGAGGCA-CTGGTTGGGCCACAAGgtaaggagttcaaggcgctgaggttcccccaccttgcccttcccctgcta Alignment from Exonerate_protein2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtatactctctttggactccctcttatgttgttgttttacatttaaagGACGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGCGGAGGCACCACAGAGGCACTGGTTGGGCCACAAGgtaaggagttcaaggcgctgaggttcccccaccttgcccttcccctgcta Alignment from Exonerate_coding2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtatactctctttggactccctcttatgttgttgttttacatttaaagGACGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGCGGAGGCACCACAGAGGCACTGGTTGGGCCACAAGgtaaggagttcaaggcgctgaggttcccccaccttgcccttcccctgcta Alignment from GeneWise GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtatactctctttggactccctcttatgttgttgttttacatttaaagGACGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGCGGAGGCACCACAGAGGCACTGGTTGGGCCACAAGgtaaggagttcaaggcgctgaggttcccccaccttgcccttcccctgcta #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCCTTCTAC-GTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgggggcacaccataagccagagctattctctcagGTCTATGAGACTCCCTTTTATCGTAGCTGTTG-CCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagcgcaagtgcatctactccacaggctccagcagttgctgtcctggt Alignment from CESAR GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgggggcacaccataagccagagctattctctcagGTCTATGAGACTCCCTTTTATCGTAGCTGTTGCCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagcgcaagtgcatctactccacaggctccagcagttgctgtcctggt Alignment from Spaln_aa2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgggggcacaccataagccagagctattctctcagGTCTATGAGACTCCCTTTTATCGTAGCTGTTGCCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagcgcaagtgcatctactccacaggctccagcagttgctgtcctggt Alignment from Spaln_nt2Genome GTCTATGAAACTCCCTTCTA-CGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgggggcacaccataagccagagctattctctcagGTCTATGAGACTCCCTTTTATCGTAGCTGTTG-CCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagcgcaagtgcatctactccacaggctccagcagttgctgtcctggt Alignment from Pairagon GTCTATGAAACTCCCTTCTA-CGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgggggcacaccataagccagagctattctctcagGTCTATGAGACTCCCTTTTATCGTAGCTGTTG-CCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagcgcaagtgcatctactccacaggctccagcagttgctgtcctggt Alignment from Exonerate_protein2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgggggcacaccataagccagagctattctctcagGTCTATGAGACTCCCTTTTATCGTAGCTGTTGCCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagcgcaagtgcatctactccacaggctccagcagttgctgtcctggt Alignment from Exonerate_coding2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgggggcacaccataagccagagctattctctcagGTCTATGAGACTCCCTTTTATCGTAGCTGTTGCCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagcgcaagtgcatctactccacaggctccagcagttgctgtcctggt Alignment from GeneWise GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgggggcacaccataagccagagctattctctcagGTCTATGAGACTCCCTTTTATCGTAGCTGTTGCCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagcgcaagtgcatctactccacaggctccagcagttgctgtcctggt #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGG-GCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGCGCCAGCC-TCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGCGCCAGCCTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGCGCCAGCCTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGCGCCAGCCTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGG-GCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGCGCCAGCCT-CTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGCGCCAGCCTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGCGCCAGCCTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGCGCCAGCCTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga #### Dak_ID2898_15 --> 1 - 0 Original Alignment gTATGGAAAGGCTGCA-CCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaaggTATGGAAAGGCTGCACCCAG-AGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggcac Alignment from CESAR gTATGGAAAGGCTGCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaaggTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggtaa Alignment from Spaln_aa2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggcac Alignment from Spaln_nt2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggcac Alignment from Pairagon GTATGGAAAGGCTGCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggcac Alignment from Exonerate_protein2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggcac Alignment from Exonerate_coding2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaagGTATGGAAAGGCTGCACCCAGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggcac Alignment from GeneWise acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaaggtatggaaaggctgcacccagagacaggacaatggtgagctccccttccccctttgggccttcctaagtgccagggtctggcac #### Dak_ID2899_14 --> 0 - 2 Original Alignment CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCT-GCCATGGATGCCGGCTTAGAGTCCATGCAGaa tagatcccaaccagctcaatgcaatcaactttccttcattatcaatacagCTCTATGGCTTGTTCCTGACTGCTTCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTCGCCATGG-TGCTGGCCTAGAGTCCATGCAGaagtaagtcagctgcccatatcttaacagcaggagtgtattgagaaggtgat Alignment from CESAR CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa tagatcccaaccagctcaatgcaatcaactttccttcattatcaatacagCTCTATGGCTTGTTCCTGACTGCTTCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTCGCCATGGTGCTGGCCTAGAGTCCATGCAGaagtaagtcagctgcccatatcttaacagcaggagtgtattgagaaggtgat Alignment from Spaln_aa2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tagatcccaaccagctcaatgcaatcaactttccttcattatcaatacagCTCTATGGCTTGTTCCTGACTGCTTCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTCGCCATGGTGCTGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccatatcttaacagcaggagtgtattgagaaggtgat Alignment from Spaln_nt2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tagatcccaaccagctcaatgcaatcaactttccttcattatcaatacagCTCTATGGCTTGTTCCTGACTGCTTCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTCGCCATGGTGCTGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccatatcttaacagcaggagtgtattgagaaggtgat Alignment from Pairagon CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCT-GCCATGGATGCCGGCTTAGAGTCCATGCAGAA tagatcccaaccagctcaatgcaatcaactttccttcattatcaatacagCTCTATGGCTTGTTCCTGACTGCTTCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTCGCCATGG-TGCTGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccatatcttaacagcaggagtgtattgagaaggtgat Alignment from Exonerate_protein2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tagatcccaaccagctcaatgcaatcaactttccttcattatcaatacagCTCTATGGCTTGTTCCTGACTGCTTCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTCGCCATGGTGCTGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccatatcttaacagcaggagtgtattgagaaggtgat Alignment from Exonerate_coding2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tagatcccaaccagctcaatgcaatcaactttccttcattatcaatacagCTCTATGGCTTGTTCCTGACTGCTTCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTCGCCATGGTGCTGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccatatcttaacagcaggagtgtattgagaaggtgat Alignment from GeneWise CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tagatcccaaccagctcaatgcaatcaactttccttcattatcaatacagCTCTATGGCTTGTTCCTGACTGCTTCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTCGCCATGGTGCTGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccatatcttaacagcaggagtgtattgagaaggtgat #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTG-CTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagccATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCTCCAGATTGCCTGTCCTGCCTGCTGG-GAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagccATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCTCCAGATTGCCTGTCCTGCCTGCTGGGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCTCCAGATTGCCTGTCCTGCCTGCTGGGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGC-TGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCTCCAGATTGCCTGTCCTGCCTGCTGG-GAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTG-CTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCTCCAGATTGCCTGTCCTGCCTGCTGG-GAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCTCCAGATTGCCTGTCCTGCCTGCTGGGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCTCCAGATTGCCTGTCCTGCCTGCTGGGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCTCCAGATTGCCTGTCCTGCCTGCTGGGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTG-TCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg cttccttgccccttgcacaaggaggctgactgtcttttctttctttttaggcTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTGGTCTCCTCTTTCC-GGAACTGGGTATTATAGCTGATGCTGCCATACGTTTGCTTggtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg cttccttgccccttgcacaaggaggctgactgtcttttctttctttttaggcTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTGGTCTCCTCTTTCCGGAACTGGGTATTATAGCTGATGCTGCCATACGTTTGCTTggtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTGGTCTCCTCTTTCCGGAACTGGGTATTATAGCTGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTGGTCTCCTCTTTCCGGAACTGGGTATTATAGCTGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTGGTCTCCTCTTTCCGGAACTGGGTATTATAGCTGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTGGTCTCCTCTTTCCGGAACTGGGTATTATAGCTGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTGGTCTCCTCTTTCCGGAACTGGGTATTATAGCTGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG cttccttgccccttgcacaaggaggctgactgtcttttctttctttttagGCTCTTCAGTGGTGCTGATAGTGAACAACCTGGGTGGTCTCCTCTTTCCGGAACTGGGTATTATAGCTGATGCTGCCATACGTTTGCTTGgtaagcctagcctatggagaggaccttcaaccccttcttttcaagttccg #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGG-GACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGCGACA-CAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtaatcctactagtacttcaggttaaagccccagtaaggctgactcctct Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGCGACACAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtaatcctactagtacttcaggttaaagccccagtaagggtgttgtttgc Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGCGACACAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggctgactcctct Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGCGACACAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggctgactcctct Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGCGACACAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggctgactcctct Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGCGACACAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggctgactcctct Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGCGACACAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggctgactcctct Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGCGACACAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggctgactcctct #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTAC-CTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTT-TGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAggtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAggtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATG-GTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg ttatgggttagaaacaatatctgtaacctctcttcattgttttctttcagtgCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGCGTAT-TCCTGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCAGATggtaggagagcagtttctggactatgaaagatgtgaatttcaggggaagca Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg ttatgggttagaaacaatatctgtaacctctcttcattgttttctttcagtgCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGCGTATTCCTGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCAGATggtaggagagcagtttctggactatgaaagatgtgaatttcaggggaagca Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagaaacaatatctgtaacctctcttcattgttttctttcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGCGTATTCCTGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCAGATGgtaggagagcagtttctggactatgaaagatgtgaatttcaggggaagca Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagaaacaatatctgtaacctctcttcattgttttctttcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGCGTATTCCTGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCAGATGgtaggagagcagtttctggactatgaaagatgtgaatttcaggggaagca Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATG-GTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagaaacaatatctgtaacctctcttcattgttttctttcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGCGTAT-TCCTGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCAGATGgtaggagagcagtttctggactatgaaagatgtgaatttcaggggaagca Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagaaacaatatctgtaacctctcttcattgttttctttcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGCGTATTCCTGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCAGATGgtaggagagcagtttctggactatgaaagatgtgaatttcaggggaagca Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagaaacaatatctgtaacctctcttcattgttttctttcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGCGTATTCCTGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCAGATGgtaggagagcagtttctggactatgaaagatgtgaatttcaggggaagca Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagaaacaatatctgtaacctctcttcattgttttctttcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGCGTATTCCTGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCAGATGgtaggagagcagtttctggactatgaaagatgtgaatttcaggggaagca #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGC-ACAGTCAACGGCATGATAg agggcctcttagggagaagggttctggaagccattattctttccttacagtGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTTTTGGCCACAG-CAATATCATGATAggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg agggcctcttagggagaagggttctggaagccattattctttccttacagtGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTTTTGGCCACAGCAATATCATGATAggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agggcctcttagggagaagggttctggaagccattattctttccttacagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTTTTGGCCACAGCAATATCATGATAGgtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGC-ACAGTCAACGGCATGATAG agggcctcttagggagaagggttctggaagccattattctttccttacagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTTTTGGCCACAG-CAATATCATGATAGgtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Pairagon agggcctcttagggagaagggttctggaagccattattctttccttacagtgctgcaaccactgatgaggagcggcagcatttacaggagataggtctcttccacctgggtgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggtgaggcttccactcccacaacacagggatcagtgctttttggccacagcaatatcatgataggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agggcctcttagggagaagggttctggaagccattattctttccttacagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTTTTGGCCACAGCAATATCATGATAGgtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agggcctcttagggagaagggttctggaagccattattctttccttacagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTTTTGGCCACAGCAATATCATGATAGgtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from GeneWise agggcctcttagggagaagggttctggaagccattattctttccttacagtgctgcaaccactgatgaggagcggcagcatttacaggagataggtctcttccacctgggtgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggtgaggcttccactcccacaacacagggatcagtgctttttggccacagcaatatcatgataggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCAC-AGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg caggaggagcagtgaagcaactcactgtatatttatccaccccacctcaggaATATGCATGCCCTCCGAGCATCAGCC-TTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTCAAAGATCTATCATACCAAAggtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg caggaggagcagtgaagcaactcactgtatatttatccaccccacctcaggaATATGCATGCCCTCCGAGCATCAGCCTTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTCAAAGATCTATCATACCAAAggtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATCAGCCTTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTCAAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATCAGCCTTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTCAAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATCAGCCTTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTCAAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATCAGCCTTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTCAAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATCAGCCTTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTCAAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactcactgtatatttatccaccccacctcagGAATATGCATGCCCTCCGAGCATCAGCCTTTCCCCCGAGGGGAAATTGAGGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCGGGGGATGGATTTCCCAGAAGAACCACATTGGCTTCAAAGATCTATCATACCAAAGgtgctgaagtaacttgaacacttagcctttcacatttaatatacaaaaac #### Dock8_ID5396_17 --> 1 - 0 Original Alignment gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAA-GGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG tcacagctggttctagagataccttcgacctttcctacctccccaaccaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAACGGGGCCTCCG-AGAGAGCCTTCTGGGGTACTCAgtatgtacttgatgagatctggtggtaagctaccttccagtctggtttct Alignment from CESAR gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG tcacagctggttctagagataccttcgacctttcctacctccccaaccaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAACGGGGCCTCCGAGAGAGCCTTCTGGGGTACTCAgtatgtacttgatgagatctggtggtaagctaccttccagtctggtttct Alignment from Spaln_aa2Genome AGTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTC tcacagctggttctagagataccttcgacctttcctacctccccaaccagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAACGGGGCCTCCGAGAGAGCCTTCTGGGGTACTCAgtatgtacttgatgagatctggtggtaagctaccttccagtctggtttct Alignment from Spaln_nt2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG tcacagctggttctagagataccttcgacctttcctacctccccaaccagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAACGGGGCCTCCGAGAGAGCCTTCTGGGGTACTCAgtatgtacttgatgagatctggtggtaagctaccttccagtctggtttct Alignment from Pairagon GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG tcacagctggttctagagataccttcgacctttcctacctccccaaccagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAACGGGGCCTCCGAGAGAGCCTTCTGGGGTACTCAgtatgtacttgatgagatctggtggtaagctaccttccagtctggtttct Alignment from Exonerate_protein2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG tcacagctggttctagagataccttcgacctttcctacctccccaaccagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAACGGGGCCTCCGAGAGAGCCTTCTGGGGTACTCAgtatgtacttgatgagatctggtggtaagctaccttccagtctggtttct Alignment from Exonerate_coding2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG tcacagctggttctagagataccttcgacctttcctacctccccaaccagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAACGGGGCCTCCGAGAGAGCCTTCTGGGGTACTCAgtatgtacttgatgagatctggtggtaagctaccttccagtctggtttct Alignment from GeneWise GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG tcacagctggttctagagataccttcgacctttcctacctccccaaccagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAACGGGGCCTCCGAGAGAGCCTTCTGGGGTACTCAgtatgtacttgatgagatctggtggtaagctaccttccagtctggtttct #### Dock8_ID5413_32 --> 0 - 1 Original Alignment GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCC-CGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCCGTGGGGAGA-GATGCGCCGTCGCATTCCAggtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from CESAR GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGT---GGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCCGTGGGGAGAG---ATGCGCCGTCGCATTCCAggtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Spaln_aa2Genome GGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCA gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCCGTGGGGAGAGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Spaln_nt2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCCGTGGGGAGAGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Pairagon GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAG-CCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCCGTGGGGAGA-GATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Exonerate_protein2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCCGTGGGGAGAGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Exonerate_coding2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCCGTGGGGAGAGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from GeneWise GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCCGTGGGGAGAGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGAT-AGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATCAGCGAAT-CAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGgagtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATCAGCGAATCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGgagtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATCAGCGAATCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATCAGCGAATCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGAT-AGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATCAGCGAA-TCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATCAGCGAATCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from Exonerate_coding2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATCAGCGAATCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATCAGCGAATCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAG-ACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAACACGG-GATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAACACGGGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAACACGGGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAACACGGGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAACACGGGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAACACGGGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAACACGGGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAACACGGGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTT-CCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGACACCACAGCTTCCCAC-TCAGGCCAGTCACCCTCCTGCCCACTTTCAGaggtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGACACCACAGCTTCCCACTCAGGCCAGTCACCCTCCTGCCCACTTTCAGaggtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGACACCACAGCTTCCCACTCAGGCCAGTCACCCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGACACCACAGCTTCCCACTCAGGCCAGTCACCCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGACACCACAGCTTCCCACTCAGGCCAGTCACCCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGACACCACAGCTTCCCACTCAGGCCAGTCACCCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from Exonerate_coding2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGACACCACAGCTTCCCACTCAGGCCAGTCACCCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG gaagtgggtccaggccctctctttaatctgaccatctcatgtgctgtcagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGACACCACAGCTTCCCACTCAGGCCAGTCACCCTCCTGCCCACTTTCAGAGgtaatcttcgcgggggcaacataatatggcatgctagacaccccctagtc #### Drap1_ID985_5 --> 1 - 0 Original Alignment CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGA-AGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtgaggagccaggtctgcagaactaaccccttcctccctcaggGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGACAGCAAAGGCA-AGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from CESAR CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtgtgtagccaggtctgcagaactaaccccttcctccctcaggGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGACAGCAAAGGCAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from Spaln_aa2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGACAGCAAAGGCAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from Spaln_nt2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGACAGCAAAGGCAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from Pairagon CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGA-AGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGACAGCAAAGGC-AAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from Exonerate_protein2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGACAGCAAAGGCAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from Exonerate_coding2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGACAGCAAAGGCAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from GeneWise CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGACAGCAAAGGCAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGAC-TTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacaggATGCAGTGCATTGAACTTGAGCAGCAGTTTGACCTTCTTGA-AGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAaggtgtgtagccaggtctgcagatggagggtcttgtgccttcaggGGCCGTA Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacaggATGCAGTGCATTGAACTTGAGCAGCAGTTTGACCTTCTTGAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAaggtgtgtagccaggtctgcagaactaaccccttcctccctcaggGGCCGTA Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACCTTCTTGAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcagatggagggtcttgtgccttcagGGGCCGTA Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACCTTCTTGAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcagatggagggtcttgtgccttcagGGGCCGTA Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACCTTCTTGAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcagatggagggtcttgtgccttcagGGGCCGTA Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACCTTCTTGAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcagatggagggtcttgtgccttcagGGGCCGTA Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACCTTCTTGAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcagatggagggtcttgtgccttcagGGGCCGTA Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGG------------------------------------------GGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACCTTCTTGAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGGTGTGTAGCCAGGTCTGCAGATGGAGGGTCTTGTGCCTTCAGGGGCCGTA #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTG-AAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGCAAGAAGGCTT-CCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACctgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGCAAGAAGGCTTCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACctgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGCAAGAAGGCTTCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGCAAGAAGGCTTCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTG-AAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGCAAGAAGGCTT-CCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGCAAGAAGGCTTCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGCAAGAAGGCTTCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggtgtgggactaaggcactccactttttctcatctcattctgtcggccagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGCAAGAAGGCTTCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctggaggggcttttagggttacggggtcaga #### Drap1_ID988_2 --> 0 - 1 Original Alignment GCGCGGATCAAAAAGATCATG-CAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tccaaatgttggggatgcaggaatggacagcctctgccttcctcatacagACGCGGATCAAAAAGATCATGCCAGACAG-TGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCtgtaagttaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from CESAR GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tccaaatgttggggatgcaggaatggacagcctctgccttcctcatacagACGCGGATCAAAAAGATCATGCCAGACAGTGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCtgtaagttaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from Spaln_aa2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatggacagcctctgccttcctcatacagACGCGGATCAAAAAGATCATGCCAGACAGTGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaagttaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from Spaln_nt2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatggacagcctctgccttcctcatacagACGCGGATCAAAAAGATCATGCCAGACAGTGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaagttaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from Pairagon GCGCGGATCAAAAAGATCATGCAGACGGAC---GAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatggacagcctctgccttcctcatacagACGCGGATCAAAAAGATCATGC---CAGACAGTGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaagttaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from Exonerate_protein2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatggacagcctctgccttcctcatacagACGCGGATCAAAAAGATCATGCCAGACAGTGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaagttaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from Exonerate_coding2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatggacagcctctgccttcctcatacagACGCGGATCAAAAAGATCATGCCAGACAGTGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaagttaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from GeneWise GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatggacagcctctgccttcctcatacagACGCGGATCAAAAAGATCATGCCAGACAGTGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaagttaccagggcccagttagtctgaggtgtgggactaaggcactcca #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTG-GACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacaggtATGTTCCAGCGACTGCGACA-ATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacaggtATGTTCCAGCGACTGCGACAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGCGACAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGCGACAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGCGACAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGCGACAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGCGACAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGCGACAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACC-ACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATAACCAAGTTCACCCACGTCCTGGC-CAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATAACCAAGTTCACCCACGTCCTGGCCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATAACCAAGTTCACCCACGTCCTGGCCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATAACCAAGTTCACCCACGTCCTGGCCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from Pairagon GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCA-CCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATAACCAAGTTCACCCACGTCCTGGC-CAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATAACCAAGTTCACCCACGTCCTGGCCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATAACCAAGTTCACCCACGTCCTGGCCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatccccttcatattgcttttttattccagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATAACCAAGTTCACCCACGTCCTGGCCAATGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtcagtcaagggtcagggggtgggtggggtatgagactgccagggcacca #### Ehbp1l1_ID1228_7 --> 2 - 1 Original Alignment atCTGTCTCGAGAGCTGAAGACA-CTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaaccatatgcccttatatgatttcatcattaactttgttctctttctagatCTGTCTCGTGAGCTGAAGACACCTCT-TGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAagtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from CESAR atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaaccatatgcccttatatgatttcatcattaactttgttctctttctagatCTGTCTCGTGAGCTGAAGACACCTCTTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAagtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from Spaln_aa2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACCTCTTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from Spaln_nt2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACCTCTTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from Pairagon ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAG------------------------------------------------------ aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACCTCTTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAGTGGGCCCTGGCCTGGGAATGGGGTTGCAGTCTGAACCTACATGATGATG Alignment from Exonerate_protein2genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACCTCTTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from Exonerate_coding2genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACCTCTTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from GeneWise ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACCTCTTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTG-AGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCCAGCATGC-CTCCAAATACCGCAAGAACATCTGGATCAAGAGAggtcagttccattcatagtattgagttatgtccttcactgcctccgacgcc Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCCAGCATGCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAggtcagttccattcatagtattgagttatgtccttcactgcctccgacgct Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCCAGCATGCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacgcc Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCCAGCATGCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacgcc Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGT-GAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCCAGCATG-CCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacgcc Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCCAGCATGCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacgcc Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCCAGCATGCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacgcc Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG catgcaggatttaaatgatgaactagctcctggcttatgtcctcccccagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCCAGCATGCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtcagttccattcatagtattgagttatgtccttcactgcctccgacgcc #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCT-TTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagggGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTCTTTGTAC-CTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAAtggtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagggGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTCTTTGTACCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAAtggtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTCTTTGTACCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTCTTTGTACCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTCTTTGTACCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTCTTTGTACCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTCTTTGTACCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTCTTTGTACCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta #### Eif3a_ID13316_14 --> 0 - 0 Original Alignment ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTAT-GAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATCGAGGAACAAA-GGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from CESAR ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATCGAGGAACAAAGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from Spaln_aa2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATCGAGGAACAAAGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from Spaln_nt2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATCGAGGAACAAAGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from Pairagon ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTAT-GAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATCGAGGAACAAA-GGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from Exonerate_protein2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATCGAGGAACAAAGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from Exonerate_coding2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATCGAGGAACAAAGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag Alignment from GeneWise ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA ggggctgtcttgctccaggtctgtgtgcttttccctttttcttttcacagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGAGTGCATATCGAGGAACAAAGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGATGAAAGGgtacccttttcaattggattgtgacatcataaatcaaaactaagttaaag #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGG-TGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac tacaattattctgccttactgggtattggacgtgtcctattcctccccagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGCTGTC-CAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACacgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac tacaattattctgccttactgggtattggacgtgtcctattcctccccagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGCTGTCCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACacgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGCTGTCCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGCTGTCCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGCTGTCCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGCTGTCCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGCTGTCCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGCTGTCCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGT-GCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAAATTGGACTGGGTCGCCT-TGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAAATTGGACTGGGTCGCCTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAAATTGGACTGGGTCGCCTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAAATTGGACTGGGTCGCCTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAAATTGGACTGGGTCGCCTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAAATTGGACTGGGTCGCCTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAAATTGGACTGGGTCGCCTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcacctttttttcccagctgtctctctgctttgccttccagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACTACAGGAAATTGGACTGGGTCGCCTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtacgttgagcatggagcatggagcttgtgatcttgctggtttgtttttt #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACC-CCAGGCAGGGGTGGGGCCAAAg atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCCACAGGCA-GGGTGGAGCGAAAggtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCCACAGGCAGGGTGGAGCGAAAggtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCCACAGGCAGGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCC-CAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCCACAGGCA-GGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCC-CAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCCACAGGCA-GGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCCACAGGCAGGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCCACAGGCAGGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCCACAGGCAGGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTG-AGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGCAGAG-CATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCCTGTTATCCAGgtacccattgtagcaccctacaaaatccttttgcagGGACACACTGATGA Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGCAGAGCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCCTGTTATCCAGgtacccattgtagcttcccttcactctgagcagcagGGACACACTGATGA Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGCAGAGCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCCTGTTATCCAGgtacccattgtagcaccctacaaaatccttttgcagGGACACACTGATGA Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGCAGAGCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCCTGTTATCCAGgtacccattgtagcaccctacaaaatccttttgcagGGACACACTGATGA Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGCAGAGCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCCTGTTATCCAGgtacccattgtagcaccctacaaaatccttttgcagGGACACACTGATGA Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGCAGAGCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCCTGTTATCCAGgtacccattgtagcaccctacaaaatccttttgcagGGACACACTGATGA Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGCAGAGCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCCTGTTATCCAGgtacccattgtagcaccctacaaaatccttttgcagGGACACACTGATGA Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATC------------------------------------CAGGGCCACACTGATGA ggggagacatatggttagtatgctcttgcatcctgtctcttcccttgcagATTCCAGAACACTTTGGCGCAGTGCAGAGCATTGCTGAAGGACTTGGCTCTGAACTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCCCAAGGTTTCTCCCCTGTTATCCAGGTACCCATTGTAGCACCCTACAAAATCCTTTTGCAGGGACACACTGATGA #### Eml3_ID2516_15 --> 0 - 0 Original Alignment CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTG-TGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgttaggattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGCTGTACACATC-ATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from CESAR CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGA---CTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtacccattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGCTGTACACA---TCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from Spaln_aa2Genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgttaggattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGCTGTACACATCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from Spaln_nt2Genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgttaggattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGCTGTACACATCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from Pairagon CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTG-TGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgttaggattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGCTGTACACAT-CATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from Exonerate_protein2genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgttaggattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGCTGTACACATCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from Exonerate_coding2genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgttaggattgtagcttcccttcactctgagcagcagGGACACACTGATGAGCTCTGGGGATTGCTGTACACATCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc Alignment from GeneWise CCCCTGTTATC------------------------------------CAGGGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGGTTAGGATTGTAGCTTCCCTTCACTCTGAGCAGCAGGGACACACTGATGAGCTCTGGGGATTGCTGTACACATCATCTCAGAATCGCTTCCTCACCTTTGGCCATGATAGGCAACTCTGCCTGTGGGATGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAGgtaagtgcagctgccctttatcagcctcactaaacatgttctgatatgcc #### Eml3_ID2522_21 --> 2 - 0 Original Alignment gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGC-AAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG atactgcaaggatgcagtaacaaccagatacgatttcctctctctgtcaggtGTATGGCCTGATGGCTGTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGCCAAAGTGCATG-CTTTCAGTATCCATGTGCTCGGGCCAAGgtaactcttcatgagcccattgggcccaggtgtgagcagatttggtgccc Alignment from CESAR gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG atactgcaaggatgcagtaacaaccagatacgatttcctctctctgtcaggtGTATGGCCTGATGGCTGTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGCCAAAGTGCATGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaactcttcatgagcccattgggcccaggtgtgagcagatttggtgccc Alignment from Spaln_aa2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG atactgcaaggatgcagtaacaaccagatacgatttcctctctctgtcagGTGTATGGCCTGATGGCTGTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGCCAAAGTGCATGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaactcttcatgagcccattgggcccaggtgtgagcagatttggtgccc Alignment from Spaln_nt2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGC-AAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG atactgcaaggatgcagtaacaaccagatacgatttcctctctctgtcagGTGTATGGCCTGATGGCTGTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGCCAAAGTGCA-TGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaactcttcatgagcccattgggcccaggtgtgagcagatttggtgccc Alignment from Pairagon GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTG-CAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG atactgcaaggatgcagtaacaaccagatacgatttcctctctctgtcagGTGTATGGCCTGATGGCTGTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGCCAAAGTGCATG-CTTTCAGTATCCATGTGCTCGGGCCAAGgtaactcttcatgagcccattgggcccaggtgtgagcagatttggtgccc Alignment from Exonerate_protein2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG atactgcaaggatgcagtaacaaccagatacgatttcctctctctgtcagGTGTATGGCCTGATGGCTGTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGCCAAAGTGCATGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaactcttcatgagcccattgggcccaggtgtgagcagatttggtgccc Alignment from Exonerate_coding2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG atactgcaaggatgcagtaacaaccagatacgatttcctctctctgtcagGTGTATGGCCTGATGGCTGTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGCCAAAGTGCATGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaactcttcatgagcccattgggcccaggtgtgagcagatttggtgccc Alignment from GeneWise GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG atactgcaaggatgcagtaacaaccagatacgatttcctctctctgtcagGTGTATGGCCTGATGGCTGTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGCCAAAGTGCATGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaactcttcatgagcccattgggcccaggtgtgagcagatttggtgccc #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACC-CGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaacccactcctggtcacaaggcttgcctctgctcttcttctcaggtGAACGTCTGTGCAACTTGGAAGAAGGCAGCCCTGGCAGTGGCACCTACACCCTGGCATG-CTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGCGCAgttgtgaaagtggctccccaggctgtgctccctctcccattgagctctct Alignment from CESAR gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaacccactcctggtcacaaggcttgcctctgctcttcttctcaggtGAACGTCTGTGCAACTTGGAAGAAGGCAGCCCTGGCAGTGGCACCTACACCCTGGCATGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGCGCAgttgtgaaagtggctccccaggctgtgctccctctcccattgagctctct Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaacccactcctggtcacaaggcttgcctctgctcttcttctcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGCCCTGGCAGTGGCACCTACACCCTGGCATGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGCGCAgttgtgaaagtggctccccaggctgtgctccctctcccattgagctctct Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaacccactcctggtcacaaggcttgcctctgctcttcttctcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGCCCTGGCAGTGGCACCTACACCCTGGCATGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGCGCAgttgtgaaagtggctccccaggctgtgctccctctcccattgagctctct Alignment from Pairagon GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCC-GGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaacccactcctggtcacaaggcttgcctctgctcttcttctcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGCCCTGGCAGTGGCACCTACACCCTGGCAT-GCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGCGCAgttgtgaaagtggctccccaggctgtgctccctctcccattgagctctct Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaacccactcctggtcacaaggcttgcctctgctcttcttctcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGCCCTGGCAGTGGCACCTACACCCTGGCATGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGCGCAgttgtgaaagtggctccccaggctgtgctccctctcccattgagctctct Alignment from Exonerate_coding2genome GGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaacccactcctggtcacaaggcttgcctctgctcttcttctcaGGTGAACGTCTGTGCAACTTGGAAGAAGGCAGCCCTGGCAGTGGCACCTACACCCTGGCATGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGCGCAgttgtgaaagtggctccccaggctgtgctccctctcccattgagctctct Alignment from GeneWise GCACCACCGGTGAGGTACTGCATCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCGGTT ggtaacccactcctggtcacaaGGCTTGCCTCTGCTCTTC---TTCTCAGGTGAACGTCTGTGCAACTTGGAAGAAGGCAGCCCTGGCAGTGGCACCTACACCCTGGCATGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGCGCAGTTgtgaaagtggctccccaggctgtgctccctctcccattgagctctct #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCG-ACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCACATGTGGA-TTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCACATGTGGATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCACATGTGGATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCACATGTGGATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATG-GAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATC-ACATGTGGATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCACATGTGGATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCACATGTGGATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCACATGTGGATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTAC-ATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTTGCTTATCATCTCAC-CCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTaggtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTTGCTTATCATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTaggtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTTGCTTATCATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTTGCTTATCATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCT--------------GGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTT--------------TGCTTATCATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTTGCTTATCATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTTGCTTATCATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtggggatggcgaagacaatgctgacagtactttgtttccacagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTTTTTGCTTATCATCTCACCCCGGGGCTGAAAGGCTTCCTGGGGCTTTTTTTCATTGTTAGgtaaggacatgctgtggggtatacaggtaagcttggacatcatggttagc #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCAC-CTAAATTTCCAGATTGAACACca atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCCTAA-TTTCCAGATTGAACACcagtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCCTAATTTCCAGATTGAACACcagtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCCTAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCCTAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCCTAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCCTAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCCTAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaaccttttaactcttctttgttttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCCTAATTTCCAGATTGAACACCAgtcagcacagaaacccgggaaacaggggtggtacaaagataagggatgga #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATG-CCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta agataagggatggacagggaagcaaaatatgtcccttctccatttcccagtGTCTTCCCCACAATGCCCACGACACA-CTACCACAAGGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta agataagggatggacagggaagcaaaatatgtcccttctccatttcccagtGTCTTCCCCACAATGCCCACGACACACTACCACAAGGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCCCACGACACACTACCACAAGGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCG-CGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCCCACGACAC-ACTACCACAAGGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACA------ACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCC------CACGACACACTACCACAAGGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCCCACGACACACTACCACAAGGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from Exonerate_coding2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCCCACGACACACTACCACAAGGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca Alignment from GeneWise CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT agataagggatggacagggaagcaaaatatgtcccttctccatttcccagTGTCTTCCCCACAATGCCCACGACACACTACCACAAGGTGACACCACTAGTACAATCCCTGTGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtactgatgaactctgagctggcagtagtaaagtgagagcgtgaccagca #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCAT-GCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATCGCCAAAC-CAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATCGCCAAACCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATCGCCAAACCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATCGCCAAACCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATCGCCAAACCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATCGCCAAACCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATCGCCAAACCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATCGCCAAACCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga #### Fads3_ID2663_6 --> 0 - 1 Original Alignment TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCAC-CAGCATCTATACTTCTTCCTGa tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCCAGC-TCTATACTTCTTCCTGagtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from CESAR TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGa tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCCAGCTCTATACTTCTTCCTGagtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from Spaln_aa2Genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCCAGCTCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from Spaln_nt2Genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCCAGCTCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from Pairagon TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCCAGCTCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from Exonerate_protein2genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCCAGCTCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from Exonerate_coding2genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCCAGCTCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from GeneWise TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCCAGCTCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGT-GCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGCGCCACTG-GACGCTACTTCTCTTTGTTGCTGTCaggtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGCGCCACTGGACGCTACTTCTCTTTGTTGCTGTCaggtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGCGCCACTGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGCGCCACTGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTAT-GGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGCGCCACT-GGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGCGCCACTGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGCGCCACTGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGCGCCACTGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAG-CCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCCACTAC-CCCACATGTCAATGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCCACTACCCCACATGTCAATGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCCACTACCCCACATGTCAATGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCCACTACCCCACATGTCAATGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCCACTACCCCACATGTCAATGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCCACTACCCCACATGTCAATGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCCACTACCCCACATGTCAATGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCCACTACCCCACATGTCAATGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCG-GCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGCGCTGCCA-GTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGgggtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGCGCTGCCAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGgggtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGCGCTGCCAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGCGCTGCCAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCG-GCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGCGCTGCC-AGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGCGCTGCCAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGCGCTGCCAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgttaaatctgacaagctccaactgatatcccctggtggccagGATGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGCGCTGCCAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtcagtactcatgttgtacatttgatgatgggtatcagggatcagtaggc #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTC-GATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacaggTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTCGATT-CTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacaggTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTCGATTCTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTCGATTCTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTCGATTCTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGG-TTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTCGATT-CTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTCGATTCTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTCGATTCTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTCGATTCTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTG-CTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagaTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCCTTCAGG-AATGGTTGTCTTCATACTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagaTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCCTTCAGGAATGGTTGTCTTCATACTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCCTTCAGGAATGGTTGTCTTCATACTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCCTTCAGGAATGGTTGTCTTCATACTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCCTTCAGGAATGGTTGTCTTCATACTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCCTTCAGGAATGGTTGTCTTCATACTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCCTTCAGGAATGGTTGTCTTCATACTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG tcgctttgcaggcaacaaaccatgctgtacctcccttctgttgttcccagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCCTTCAGGAATGGTTGTCTTCATACTTGCAGAACAAAAGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgaggcacatcaaactgcactggacttatagcatggagatatgatggga #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGC-CCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagaGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCCAGACC-TCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGGTCAACaggtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagaGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCCAGACCTCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGGTCAACaggtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCCAGACCTCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCCAGACCTCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCCAGACCTCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCCAGACCTCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCCAGACCTCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttagtgagtggtgtgaaatttttttccccctctgaaagAGATCTAGAAGAAGATCCATTATTTACTGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCCAGACCTCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtaagtcacttgattatggtgagtgtgtcatgcatctgagctcggctgct #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTA-TGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTg cagcgatctgcccctacttaaaaaaattcttctttctttttgtgccgcaggtCCCAGAAATTGCCTACTGGTTGTTGA-CATCCTTGTTTTGTTGATTCCACTTggtgagtctaaaggtgttcaggatgaatattaaagtgatgttgaaaagtag Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTg cagcgatctgcccctacttaaaaaaattcttctttctttttgtgccgcaggtCCCAGAAATTGCCTACTGGTTGTTGACATCCTTGTTTTGTTGATTCCACTTggtgagtctaaaggtgttcaggatgaatattaaagtgatgttgaaaagtag Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagcgatctgcccctacttaaaaaaattcttctttctttttgtgccgcagGTCCCAGAAATTGCCTACTGGTTGTTGACATCCTTGTTTTGTTGATTCCACTTGgtgagtctaaaggtgttcaggatgaatattaaagtgatgttgaaaagtag Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTA-TGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagcgatctgcccctacttaaaaaaattcttctttctttttgtgccgcagGTCCCAGAAATTGCCTACTGGTTGTTGA-CATCCTTGTTTTGTTGATTCCACTTGgtgagtctaaaggtgttcaggatgaatattaaagtgatgttgaaaagtag Alignment from Pairagon GTCCCAGAAATCGCCTA-TGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagcgatctgcccctacttaaaaaaattcttctttctttttgtgccgcagGTCCCAGAAATTGCCTACTGGTTGTTGA-CATCCTTGTTTTGTTGATTCCACTTGgtgagtctaaaggtgttcaggatgaatattaaagtgatgttgaaaagtag Alignment from Exonerate_protein2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagcgatctgcccctacttaaaaaaattcttctttctttttgtgccgcagGTCCCAGAAATTGCCTACTGGTTGTTGACATCCTTGTTTTGTTGATTCCACTTGgtgagtctaaaggtgttcaggatgaatattaaagtgatgttgaaaagtag Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagcgatctgcccctacttaaaaaaattcttctttctttttgtgccgcagGTCCCAGAAATTGCCTACTGGTTGTTGACATCCTTGTTTTGTTGATTCCACTTGgtgagtctaaaggtgttcaggatgaatattaaagtgatgttgaaaagtag Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagcgatctgcccctacttaaaaaaattcttctttctttttgtgccgcagGTCCCAGAAATTGCCTACTGGTTGTTGACATCCTTGTTTTGTTGATTCCACTTGgtgagtctaaaggtgttcaggatgaatattaaagtgatgttgaaaagtag #### Fau_ID1402_2 --> 0 - 1 Original Alignment GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTA-GCAGGCCGCATGCTGGGAg cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTACGCAG-CCGCATGCTTGGCggtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from CESAR GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTACGCAGCCGCATGCTTGGCggtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from Spaln_aa2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTACGCAGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from Spaln_nt2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTACGCAGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from Pairagon GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTACGCAGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from Exonerate_protein2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTACGCAGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from Exonerate_coding2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTACGCAGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from GeneWise GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTACGCAGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga #### Fau_ID1403_3 --> 2 - 0 Original Alignment gtAAAGTTCACGGTTCCCTG-GCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaaggtATAGTTCATGGCTCCCTCCGCTCGGG-TGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from CESAR gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaaggtATAGTTCATGGCTCCCTCCGCTCGGGTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from Spaln_aa2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCCGCTCGGGTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from Spaln_nt2Genome GTAAAGTTCACGGTTCCCTG-GCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCCGCTCGGG-TGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from Pairagon GTAAAGTTCACGGTTCCCT-GGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCCGCTCGGG-TGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from Exonerate_protein2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCCGCTCGGGTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from Exonerate_coding2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCCGCTCGGGTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from GeneWise GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCCGCTCGGGTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCG-CTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacacaacaggggcttgggggtgcgtccctgtcttctccccgcagaCTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCTTTTGGGGCACCTTATTC-GCTGCATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtaacatggtgattggggatgcccttgtccctgtgctgctttgataccgc Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacacaacaggggcttgggggtgcgtccctgtcttctccccgcagaCTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCTTTTGGGGCACCTTATTCGCTGCATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtaacatggtgattggggatgcccttgtccctgtgctgctttgataccgc Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacacaacaggggcttgggggtgcgtccctgtcttctccccgcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCTTTTGGGGCACCTTATTCGCTGCATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtaacatggtgattggggatgcccttgtccctgtgctgctttgataccgc Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacacaacaggggcttgggggtgcgtccctgtcttctccccgcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCTTTTGGGGCACCTTATTCGCTGCATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtaacatggtgattggggatgcccttgtccctgtgctgctttgataccgc Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacacaacaggggcttgggggtgcgtccctgtcttctccccgcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCTTTTGGGGCACCTTATTCGCTGCATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtaacatggtgattggggatgcccttgtccctgtgctgctttgataccgc Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacacaacaggggcttgggggtgcgtccctgtcttctccccgcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCTTTTGGGGCACCTTATTCGCTGCATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtaacatggtgattggggatgcccttgtccctgtgctgctttgataccgc Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacacaacaggggcttgggggtgcgtccctgtcttctccccgcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCTTTTGGGGCACCTTATTCGCTGCATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtaacatggtgattggggatgcccttgtccctgtgctgctttgataccgc Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacacaacaggggcttgggggtgcgtccctgtcttctccccgcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCCGCATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCTTTTGGGGCACCTTATTCGCTGCATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtaacatggtgattggggatgcccttgtccctgtgctgctttgataccgc #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCC-CAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggagtggttctttattacttcaaatacagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGG-TGTTTCCCAACAAgtgcagtcggactctctcatgcctgggtttgtctatccattccgggcttg Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggagtggttctttattacttcaaatacagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgcagtcggactctctcatgcctgggtttgtctatccattccgggcttg Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggagtggttctttattacttcaaatacagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgcagtcggactctctcatgcctgggtttgtctatccattccgggcttg Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggagtggttctttattacttcaaatacagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgcagtcggactctctcatgcctgggtttgtctatccattccgggcttg Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggagtggttctttattacttcaaatacagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgcagtcggactctctcatgcctgggtttgtctatccattccgggcttg Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggagtggttctttattacttcaaatacagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgcagtcggactctctcatgcctgggtttgtctatccattccgggcttg Alignment from Exonerate_coding2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggagtggttctttattacttcaaatacagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgcagtcggactctctcatgcctgggtttgtctatccattccgggcttg Alignment from GeneWise CTCTGCCTCCAAGCCCAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggagtggttctTTATTACTTCAAATACAGGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCCAGGTGTTTCCCAACAAgtgcagtcggactctctcatgcctgggtttgtctatccattccgggcttg #### Fgf8_ID9567_2 --> 1 - 0 Original Alignment gCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgcttcttgagcctcttcccagttctgacccttgtgtttcaggCTGCTGCAATTGTTGCGTTTTCT-CCTCCAAGCCCAGgtaccaagtgcactcaagtaaggagtgaaaagcgggaagcatagggacag Alignment from CESAR gCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccatctgcttcttgagcctcttcccagttctgacccttgtgtttcaggCTGCTGCAATTGTTGCGTTTTCTCCTCCAAGCCCAGgtaccaagtgcactcaagtaaggagtgaaaagcgggaagcatagggacag Alignment from Spaln_aa2Genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccatctgcttcttgagcctcttcccagttctgacccttgtgtttcagGCTGCTGCAATTGTTGCGTTTTCTCCTCCAAGCCCAGgtaccaagtgcactcaagtaaggagtgaaaagcgggaagcatagggacag Alignment from Spaln_nt2Genome GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgcttcttgagcctcttcccagttctgacccttgtgtttcagGCTGCTGCAATTGTTGCGTTTTCT-CCTCCAAGCCCAGgtaccaagtgcactcaagtaaggagtgaaaagcgggaagcatagggacag Alignment from Pairagon GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccatctgcttcttgagcctcttcccagttctgacccttgtgtttcagGCTGCTGCAATTGTTGCGTTTTCTCCTCCAAGCCCAGgtaccaagtgcactcaagtaaggagtgaaaagcgggaagcatagggacag Alignment from Exonerate_protein2genome gccccatctgcttcttgagcctcttcccagttctgacccttgtgtttcaggctgctgcaattgttgcgttttctcctccaagcccaggtaccaagtgcactcaagtaaggagtgaaaagcgggaagcatagggacag Alignment from Exonerate_coding2genome gccccatctgcttcttgagcctcttcccagttctgacccttgtgtttcaggctgctgcaattgttgcgttttctcctccaagcccaggtaccaagtgcactcaagtaaggagtgaaaagcgggaagcatagggacag Alignment from GeneWise gccccatctgcttcttgagcctcttcccagttctgacccttgtgtttcaggctgctgcaattgttgcgttttctcctccaagcccaggtaccaagtgcactcaagtaaggagtgaaaagcgggaagcatagggacag #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCAC-GCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatccgggggccctctagggttttacttgatatggctctttgtctccagtgAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCCGCCCC-AAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAaggtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatccgggggccctctagggttttacttgatatggctctttgtctccagtgAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCCGCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAaggtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCCGCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCCGCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCCGCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCCGCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCCGCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCCGCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGA-GCCGTCGGTGAGGCCCCCACTGACCCAg gcataaaaaggaatttctggtccaaagattttcttctttttttaatataggGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGCGCCATTG-TGAGGCCCCAACTGATCCAggtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcataaaaaggaatttctggtccaaagattttcttctttttttaatataggGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGCGCCATTGTGAGGCCCCAACTGATCCAggtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGCGCCATTGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGCGCCATTGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGCGCCATTGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGCGCCATTGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGCGCCATTGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcataaaaaggaatttctggtccaaagattttcttctttttttaatatagGGATTATGCAGCTATTGTCTTCTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGCACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGCGCCATTGTGAGGCCCCAACTGATCCAGgtaggaaaactccacaccccccgtgggactagctacctagtgtcagttca #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGT-GTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacagtttatagacttcaatgatccttgtatttcagcCTGGTGTGCACTGCCCTTCGGGGAAAGCTCGGTCGTCTTCT-TGAGATGGAAACCAACTTCAAGgtaagtcgacttggcagtcagagccctctgcccagatcaccaagtgactt Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacagtttatagacttcaatgatccttgtatttcagcCTGGTGTGCACTGCCCTTCGGGGAAAGCTCGGTCGTCTTCTTGAGATGGAAACCAACTTCAAGgtaagtcgacttggcagtcagagccctctgcccagatcaccaagtgactt Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacagtttatagacttcaatgatccttgtatttcagCCTGGTGTGCACTGCCCTTCGGGGAAAGCTCGGTCGTCTTCTTGAGATGGAAACCAACTTCAAGgtaagtcgacttggcagtcagagccctctgcccagatcaccaagtgactt Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacagtttatagacttcaatgatccttgtatttcagCCTGGTGTGCACTGCCCTTCGGGGAAAGCTCGGTCGTCTTCTTGAGATGGAAACCAACTTCAAGgtaagtcgacttggcagtcagagccctctgcccagatcaccaagtgactt Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGT-GTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacagtttatagacttcaatgatccttgtatttcagCCTGGTGTGCACTGCCCTTCGGGGAAAGCTCGGTCGTCTTCT-TGAGATGGAAACCAACTTCAAGgtaagtcgacttggcagtcagagccctctgcccagatcaccaagtgactt Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacagtttatagacttcaatgatccttgtatttcagCCTGGTGTGCACTGCCCTTCGGGGAAAGCTCGGTCGTCTTCTTGAGATGGAAACCAACTTCAAGgtaagtcgacttggcagtcagagccctctgcccagatcaccaagtgactt Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacagtttatagacttcaatgatccttgtatttcagCCTGGTGTGCACTGCCCTTCGGGGAAAGCTCGGTCGTCTTCTTGAGATGGAAACCAACTTCAAGgtaagtcgacttggcagtcagagccctctgcccagatcaccaagtgactt Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacagtttatagacttcaatgatccttgtatttcagCCTGGTGTGCACTGCCCTTCGGGGAAAGCTCGGTCGTCTTCTTGAGATGGAAACCAACTTCAAGgtaagtcgacttggcagtcagagccctctgcccagatcaccaagtgactt #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAAT-AAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG agcccccactctaagagcaggaggcagatttctttgttttccttctgtagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAG------CACAATCAAGGATG-CAGAGACTTATTTGTGGACCTTGTGGAGAAGgtgagcagtgcttagatgtgggacagcctggggaccgggggcagggacag Alignment from CESAR AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG agcccccactctaagagcaggaggcagatttctttgttttccttctgtagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAG------CACAATCAAGGATGCAGAGACTTATTTGTGGACCTTGTGGAGAAGgtgagcagtgcttagatgtgggacagcctggggaccgggggcagggacag Alignment from Spaln_aa2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG agcccccactctaagagcaggaggcagatttctttgttttccttctgtagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAG------CACAATCAAGGATGCAGAGACTTATTTGTGGACCTTGTGGAGAAGgtgagcagtgcttagatgtgggacagcctggggaccgggggcagggacag Alignment from Spaln_nt2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG agcccccactctaagagcaggaggcagatttctttgttttccttctgtagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAG------CACAATCAAGGATGCAGAGACTTATTTGTGGACCTTGTGGAGAAGgtgagcagtgcttagatgtgggacagcctggggaccgggggcagggacag Alignment from Pairagon AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAAT-AAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG agcccccactctaagagcaggaggcagatttctttgttttccttctgtagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAG------CACAATCAAGGATG-CAGAGACTTATTTGTGGACCTTGTGGAGAAGgtgagcagtgcttagatgtgggacagcctggggaccgggggcagggacag Alignment from Exonerate_protein2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG agcccccactctaagagcaggaggcagatttctttgttttccttctgtagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAG------CACAATCAAGGATGCAGAGACTTATTTGTGGACCTTGTGGAGAAGgtgagcagtgcttagatgtgggacagcctggggaccgggggcagggacag Alignment from Exonerate_coding2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG agcccccactctaagagcaggaggcagatttctttgttttccttctgtagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAG------CACAATCAAGGATGCAGAGACTTATTTGTGGACCTTGTGGAGAAGgtgagcagtgcttagatgtgggacagcctggggaccgggggcagggacag Alignment from GeneWise AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG agcccccactctaagagcaggaggcagatttctttgttttccttctgtagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAG------CACAATCAAGGATGCAGAGACTTATTTGTGGACCTTGTGGAGAAGgtgagcagtgcttagatgtgggacagcctggggaccgggggcagggacag #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTC-CTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCCTCA-CCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCcggtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCCTCACCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCcggtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCCTCACCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCCTCACCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCCTCACCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCCTCACCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCCTCACCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from GeneWise TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCCTCACCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc #### Fkbp2_ID1946_3 --> 1 - 1 Original Alignment gATGTGTGAAGGG-GAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGg ttggccgttggtctgggcgtttcaggtggctaaccccttgcctctgtcaggATGTGTGAAGGACGAAA-GCGGAAGTTGGTCATCCCGTCAGAGCTGggtaggtgagcatggtggttagaaggtaattggatctggagagggcttaaa Alignment from CESAR gATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGg ttggccgttggtctgggcgtttcaggtggctaaccccttgcctctgtcaggATGTGTGAAGGACGAAAGCGGAAGTTGGTCATCCCGTCAGAGCTGggtaggtgagcatggtggttagaaggtaattggatctggagagggcttaaa Alignment from Spaln_aa2Genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttggccgttggtctgggcgtttcaggtggctaaccccttgcctctgtcagGATGTGTGAAGGACGAAAGCGGAAGTTGGTCATCCCGTCAGAGCTGGgtaggtgagcatggtggttagaaggtaattggatctggagagggcttaaa Alignment from Spaln_nt2Genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttggccgttggtctgggcgtttcaggtggctaaccccttgcctctgtcagGATGTGTGAAGGACGAAAGCGGAAGTTGGTCATCCCGTCAGAGCTGGgtaggtgagcatggtggttagaaggtaattggatctggagagggcttaaa Alignment from Pairagon GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttggccgttggtctgggcgtttcaggtggctaaccccttgcctctgtcagGATGTGTGAAGGACGAAAGCGGAAGTTGGTCATCCCGTCAGAGCTGGgtaggtgagcatggtggttagaaggtaattggatctggagagggcttaaa Alignment from Exonerate_protein2genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttggccgttggtctgggcgtttcaggtggctaaccccttgcctctgtcagGATGTGTGAAGGACGAAAGCGGAAGTTGGTCATCCCGTCAGAGCTGGgtaggtgagcatggtggttagaaggtaattggatctggagagggcttaaa Alignment from Exonerate_coding2genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttggccgttggtctgggcgtttcaggtggctaaccccttgcctctgtcagGATGTGTGAAGGACGAAAGCGGAAGTTGGTCATCCCGTCAGAGCTGGgtaggtgagcatggtggttagaaggtaattggatctggagagggcttaaa Alignment from GeneWise GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttggccgttggtctgggcgtttcaggtggctaaccccttgcctctgtcagGATGTGTGAAGGACGAAAGCGGAAGTTGGTCATCCCGTCAGAGCTGGgtaggtgagcatggtggttagaaggtaattggatctggagagggcttaaa #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTG-AATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGCAATGCAATGG-GTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGCAATGCAATGGGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGCAATGCAATGGGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGCAATGCAATGGGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTG-AATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGCAATGCAATGG-GTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGCAATGCAATGGGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGCAATGCAATGGGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGCAATGCAATGGGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCT-CAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagggACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCCAGCCAC-CAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagggACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCCAGCCACCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCCAGCCACCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCCAGCCACCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCCAGCCACCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCCAGCCACCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCCAGCCACCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCCAGCCACCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGA-AACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAACAACCATGGCC-GTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAggtaaatcccgctggcgatgaagcagtcatataggcaaagatatttgccct Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAACAACCATGGCCGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAggtaaatcccgctggcgatgaagcagtcatataggcaaagatattcctctc Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAACAACCATGGCCGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttgccct Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATCAAGGT------AGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAACAACCATGGCCGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttgccct Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGA-AACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAACAACCAT-GGCCGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttgccct Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAACAACCATGGCCGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttgccct Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAACAACCATGGCCGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttgccct Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAACAACCATGGCCGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttgccct #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTT-TATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCCTATGTCT-GAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCCTATGTCTGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCCTATGTCTGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCCTATGTCTGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Pairagon GGTTCAGCTCCTAATCT-TTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCCTATGTCT-GAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCCTATGTCTGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCCTATGTCTGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCCTATGTCTGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCC-CAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCCAAACCT-GTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCCAAACCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCCAAACCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCCAAACCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCCAAACCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCCAAACCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCCAAACCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagaagccctatgtactgcgtgattcttcccttttttccctacagGTGTGGTATGACATTCAGAGCTATCAGAAACATCATGGGCCCCCAAACCTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctatctactatctctgtttgcttgttcactcccgga #### Ganab_ID2485_24 --> 1 - 1 Original Alignment tTCAGCAGACCCCAAAGGCCACCTTGAGACACCT-ATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagtTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTAG-GCGAGTAGTCATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAggtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from CESAR tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagtTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTAGGCGAGTAGTCATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAggtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from Spaln_aa2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTAGGCGAGTAGTCATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from Spaln_nt2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTAGGCGAGTAGTCATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from Pairagon TTCAGCAGACCCCAAAGGCCACCTTGAGACACCT-ATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTAG-GCGAGTAGTCATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from Exonerate_protein2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTAGGCGAGTAGTCATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from Exonerate_coding2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTAGGCGAGTAGTCATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc Alignment from GeneWise TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG tccccttgctgcccatttctccaagtggaagttgtttcctttattgccagTTTAGCAGACCCCAAGGGCCACCTGGAGACACCTCATCTGGGTAGGCGAGTAGTCATAATGGGGGCTGGAAAGCCAGCTGCTGTGGTGCTCCAGACAAAAGgtatgggataggtccagcattgagattgagagaaaaagcagtagcagatc #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTT-TTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTCTTGACATTTA-TGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGtgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTCTTGACATTTATGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGtgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTCTTGACATTTATGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTCTTGACATTTATGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTT-TTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTCTTGACATTTA-TGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTCTTGACATTTATGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTCTTGACATTTATGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTCTTGACATTTATGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTG-GCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagctGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGCGCCTTAG-TGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTagtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagctGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGCGCCTTAGTGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTagtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGCGCCTTAGTGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGCGCCTTAGTGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTG-GCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGCGCCTTAG-TGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGCGCCTTAGTGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGCGCCTTAGTGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGCGCCTTAGTGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa #### Gbf1_ID9799_18 --> 1 - 0 Original Alignment cACCTTCAGCTTTCAG-GGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagtACCTTCAGCTTTCAACGGCCTGCGGC-TGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from CESAR cACCTTCAGCTTTCAG-GGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagtACCTTCAGCTTTCAACGGCCTGCGGC-TGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from Spaln_aa2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAACGGCCTGCGGCTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from Spaln_nt2Genome CACCTTCAGCTTTCAG-GGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAACGGCCTGCGGC-TGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from Pairagon CACCTTCAGCTTTCAG-GGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAACGGCCTGCGGC-TGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from Exonerate_protein2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAACGGCCTGCGGCTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from Exonerate_coding2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAACGGCCTGCGGCTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from GeneWise CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAACGGCCTGCGGCTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa #### Gbf1_ID9800_19 --> 0 - 0 Original Alignment AGTTGTAATGGCTCC-CCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCCTTTTG-TAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from CESAR AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCCTTTTGTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from Spaln_aa2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCCTTTTGTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from Spaln_nt2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCCTTTTGTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from Pairagon AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCCTTTTGTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from Exonerate_protein2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCCTTTTGTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from Exonerate_coding2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCCTTTTGTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg Alignment from GeneWise AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaaagatgatacattcttttttcttccttctgcagAGCTGTAATGGCTCCCCCTTTTGTAATAGCGGTGCCTGCTTTGCCCTAGCCTATGGTGTCATCATGCTTAACACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCACCCATGACCCTGGAGgtaaaattgaaaagatctgttcagctttgaaagtgttaaccataccaagg #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCC-CACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccaggAAGTGTGCCACGATCTCTGCCCCACTATGGCC-CAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccaggAAGTGTGCCACGATCTCTGCCCCACTATGGCCCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCCACTATGGCCCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCC-ACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCCACTATGGCC-CAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Pairagon GAAGTGTGCCATGATCTCCG-CCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCCACTATGGCC-CAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCCACTATGGCCCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCCACTATGGCCCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCCACTATGGCCCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAA-ATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGCATGATCA-AGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGCATGATCAAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGCATGATCAAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGCATGATCAAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Pairagon CAATGTGACCCAGAAAAA-ATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGCATGATCA-AGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGCATGATCAAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGCATGATCAAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGCATGATCAAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAG-TCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGCTCCC-ACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATggtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGCTCCCACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATggtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGCTCCCACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGCTCCCACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGCTCCCACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGCTCCCACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGCTCCCACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGCTCCCACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCC-CGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttataggaATTGCTTGCTTATGCTGTGATGCCCCGACGCC-GGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttataggaATTGCTTGCTTATGCTGTGATGCCCCGACGCCGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCCGACGCCGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCCGACGCCGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCCGACGCCGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCCGACGCCGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCCGACGCCGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacagtctctctggcacaccatgctatttatagGAATTGCTTGCTTATGCTGTGATGCCCCGACGCCGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCACGATCTGCAGAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgggccctcaagtcaacagaagttcagataacaagataaaggtggagaa #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGC-GGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgtctgtttccttttcacttccagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTCGGGATGGAAG-GACCCGGATGCGGGCTTCCACGCTGCTCTCAAAGgtaagtcttttccggtttgcacccatctctctacctcattccttttccca Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgtctgtttccttttcacttccagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTCGGGATGGAAGGACCCGGATGCGGGCTTCCACGCTGCTCTCAAAGgtaagtcttttccggtttgcacccatctctctacctcattccttttccca Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgtctgtttccttttcacttccagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTCGGGATGGAAGGACCCGGATGCGGGCTTCCACGCTGCTCTCAAAGgtaagtcttttccggtttgcacccatctctctacctcattccttttccca Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgtctgtttccttttcacttccagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTCGGGATGGAAGGACCCGGATGCGGGCTTCCACGCTGCTCTCAAAGgtaagtcttttccggtttgcacccatctctctacctcattccttttccca Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGG-CGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgtctgtttccttttcacttccagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTCGGGATGGAAG-GACCCGGATGCGGGCTTCCACGCTGCTCTCAAAGgtaagtcttttccggtttgcacccatctctctacctcattccttttccca Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgtctgtttccttttcacttccagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTCGGGATGGAAGGACCCGGATGCGGGCTTCCACGCTGCTCTCAAAGgtaagtcttttccggtttgcacccatctctctacctcattccttttccca Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgtctgtttccttttcacttccagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTCGGGATGGAAGGACCCGGATGCGGGCTTCCACGCTGCTCTCAAAGgtaagtcttttccggtttgcacccatctctctacctcattccttttccca Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgtctgtttccttttcacttccagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTCGGGATGGAAGGACCCGGATGCGGGCTTCCACGCTGCTCTCAAAGgtaagtcttttccggtttgcacccatctctctacctcattccttttccca #### Gbf1_ID9817_36 --> 0 - 0 Original Alignment GTCTTCCTGCAGCATCTG-TCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGCTCTCCAT-GTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from CESAR GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGCTCTCCATGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from Spaln_aa2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGCTCTCCATGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from Spaln_nt2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGCTCTCCATGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from Pairagon GTCTTCCTGCAGCATCTG-TCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGCTCTCCA-TGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from Exonerate_protein2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGCTCTCCATGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from Exonerate_coding2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGCTCTCCATGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg Alignment from GeneWise GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG tgagagaagcctcagctaatacccttgtctgttggttcttttcctttcagGTCTTCCTGCAGCATCTGCTCTCCATGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagctctgccttgagccatttttgtttgggcatatcttctcacgctgg #### Gbf1_ID9819_38 --> 2 - 1 Original Alignment acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCAT-CCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagacCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCCAC-TCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTggtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from CESAR acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagacCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCCACTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTggtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from Spaln_aa2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCCACTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from Spaln_nt2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCCACTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from Pairagon ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCCACTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from Exonerate_protein2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCCACTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from Exonerate_coding2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCCACTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from GeneWise ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCCACTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTT-GTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagtTATCACTCAGAAACCAATCTTCGTCCGTT-CATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagtTATCACTCAGAAACCAATCTTCGTCCGTTCATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCTTCGTCCGTTCATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCTTCGTCCGTTCATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCTTCGTCCGTTCATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCTTCGTCCGTTCATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCTTCGTCCGTTCATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCTTCGTCCGTTCATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTT-TCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagagAACCATAATGCTGTATTTCTCTGCTGCTG-CTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagagAACCATAATGCTGTATTTCTCTGCTGCTGCTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTCTCTGCTGCTGCTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTCTCTGCTGCTGCTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from Pairagon AGAACCATAATGCTGTGTTT-TCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTCTCTGCTGCT-GCTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTCTCTGCTGCTGCTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTCTCTGCTGCTGCTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ataggcatgccccagtatttgttccccgttaaaaaaacattgtctttaagAGAACCATAATGCTGTATTTCTCTGCTGCTGCTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTCCAGGGTTTTCTGAATGATCTGGAGgtgagagatacagaagagcagggaattctgtttaggtgcagcaagagata #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGA-TATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagatACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTCTATGGAGGCC-GCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagatACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTCTATGGAGGCCGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTCTATGGAGGCCGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGA-TATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTCTATGGAGGCC-GCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCG-ATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTCTATGGAGGCC-GCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTCTATGGAGGCCGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTCTATGGAGGCCGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTCTATGGAGGCCGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact #### Hnrnpul2_ID2401_5 --> 0 - 1 Original Alignment GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACA-GAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTg tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACACGAAGTCT-TCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTggtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from CESAR GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTg tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACACGAAGTCTTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTggtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from Spaln_aa2Genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACACGAAGTCTTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from Spaln_nt2Genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACACGAAGTCTTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from Pairagon GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACA-GAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACACGAAGTCT-TCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from Exonerate_protein2genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACACGAAGTCTTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from Exonerate_coding2genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACACGAAGTCTTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac Alignment from GeneWise GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG tagacctgcatttatcatagatctaagaaaaagaatttctgtgttcccagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACACGAAGTCTTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTGgtaagttgattctggaacttcttgtttgtgctttttaccatctcacctac #### Hps1_ID8617_11 --> 0 - 0 Original Alignment AGCCCCAGCACCCCACTGGCCCTGATC-CTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCTGATCCTTGT-CCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from CESAR AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCTGATCCTTGTCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from Spaln_aa2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCTGATCCTTGTCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from Spaln_nt2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCTGATCCTTGTCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAACA---ACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from Pairagon AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCTGATCCTTGTCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAACA---ACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from Exonerate_protein2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCTGATCCTTGTCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from Exonerate_coding2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCTGATCCTTGTCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg Alignment from GeneWise AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG tggctctctctggtgtccctgtttcaatttaccccccttctgcctcacagAGCCCCGGCACCCCACTCACCCTGATCCTTGTCCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGTCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTTATCAAGAATCGGGTTGGGCAGGAGATTCAGgtgaggtcacaggactaacatgcatcagctttggaggagatttagtgctg #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTG-GTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagcCAAGGCGCAAGCACCCTGTGCCCTGCGGACCTCCTT---------CTCCTGCGTGCAGGACC-TCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTG-GTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagcCAAGGCGCAAGCACCCTGTGCCCTGCGGACCTCCTT---------CTCCTGCGTGCAGGACC-TCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTGCGGACCTCCTT---------CTCCTGCGTGCAGGACCTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTGCGGACCTCCT-----TC-TCCTGC--GTGCAGGACCT-CAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTG-GTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTGCGGACCTCC---------TTCTCCTGCGTGCAGGACCT-CAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Exonerate_protein2genome acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagccaaggcgcaagcaccctgtgccctgcggacctccttctcctgcgtgcaggacctcagccctccccaggtatgacagaggaggagggggaggaagaagatagtcacagccctcaggtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Exonerate_coding2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTGCGGACCTCCTT---------CTCCTGCGTGCAGGACCTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from GeneWise --GCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagccaagGCGCAAGCACCCTGTGCCCTGCGGACCTCCTT---------CTCCTGCGTGCAGGACCTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAg aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagacCAGGTGCTGCTATGCTACTATCGAGTCAC-CTGTCCTGCAAGTCAATCCggtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from CESAR acCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagacCAGGTGCTGCTATGCTACTATCGAGTCACCTGTCCTGCAAGTCAATCCggtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATCGAGTCACCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATCGAGTCACCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Pairagon ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATCGAGTC-ACCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATCGAGTCACCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATCGAGTCACCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from GeneWise ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATCGAGTCACCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTG-GCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAAGAAAGCAAAGGAGGTGCGCAGCAG-CAGAAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAAGAAAGCAAAGGAGGTGCGCAGCAGCAGAAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAAGAAAGCAAAGGAGGTGCGCAGCAGCAGAAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAAGAAAGCAAAGGAGGTGCGCAGCAGCAGAAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTG-GCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAAGAAAGCAAAGGAGGTGCGCAGCAG-CAGAAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAAGAAAGCAAAGGAGGTGCGCAGCAGCAGAAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAAGAAAGCAAAGGAGGTGCGCAGCAGCAGAAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc Alignment from GeneWise ---GAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaagaggggaggttcttgggtttatcttacttagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAAGAAAGCAAAGGAGGTGCGCAGCAGCAGAAAGGTCCTCAACATGACTGTGGATGTGCGGgtaagtcttgctattcagatgggttcttactccatgcttcatttatttcc #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAA-CTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaaggGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACCTGG-GGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaaggGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACCTGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACCTGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACCTGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACCTGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACCTGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACCTGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACCTGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCT-TTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCCTTCA-AGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAggtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCCTTCAAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAggtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCCTTCAAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCCTTCAAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCCTTCAAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCCTTCAAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCCTTCAAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCCTTCAAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct #### Kat5_ID1114_8 --> 0 - 0 Original Alignment GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTA-CCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccacactacttaactactaccataccttctgtttttctttaacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTAGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTCACCACATTACCCCGTCCTCT-CCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtgagcggggtcttgggcggtggcctatcctgagcaccctcactggtgcc Alignment from CESAR GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccacactacttaactactaccataccttctgtttttctttaacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTAGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTCACCACATTACCCCGTCCTCTCCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtgagcggggtcttgggcggtggcctatcctgagcaccctcactggtgcc Alignment from Spaln_aa2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccacactacttaactactaccataccttctgtttttctttaacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTAGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTCACCACATTACCCCGTCCTCTCCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtgagcggggtcttgggcggtggcctatcctgagcaccctcactggtgcc Alignment from Spaln_nt2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccacactacttaactactaccataccttctgtttttctttaacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTAGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTCACCACATTACCCCGTCCTCTCCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtgagcggggtcttgggcggtggcctatcctgagcaccctcactggtgcc Alignment from Pairagon GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTA-CCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccacactacttaactactaccataccttctgtttttctttaacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTAGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTCACCACATTACCCCGTCCTCT-CCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtgagcggggtcttgggcggtggcctatcctgagcaccctcactggtgcc Alignment from Exonerate_protein2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccacactacttaactactaccataccttctgtttttctttaacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTAGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTCACCACATTACCCCGTCCTCTCCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtgagcggggtcttgggcggtggcctatcctgagcaccctcactggtgcc Alignment from Exonerate_coding2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccacactacttaactactaccataccttctgtttttctttaacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTAGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTCACCACATTACCCCGTCCTCTCCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtgagcggggtcttgggcggtggcctatcctgagcaccctcactggtgcc Alignment from GeneWise GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcacaccacactacttaactactaccataccttctgtttttctttaacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCTCCACGAATGACTGGCAGTCTAGTGTCTGACCAGAGCCATGACGACATTGTCACCCGAATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCATCACCTTAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTCACCACATTACCCCGTCCTCTCCTGTGTGAATTTTGCCTGAAGTATGGCCATAGTCTCAAGTGTCTCAAACGCCACCTCgtgagcggggtcttgggcggtggcctatcctgagcaccctcactggtgcc #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAG-ACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCAGTGCCCAGTGAGCACAG-CGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCAGTGCCCAGTGAGCACAGCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCAGTGCCCAGTGAGCACAGCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAG-ACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCAGTGCCCAGTGAGCACAG-CGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from Pairagon AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCAGTGCCCAGTGAGCACAGCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCAGTGCCCAGTGAGCACAGCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCAGTGCCCAGTGAGCACAGCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from GeneWise AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG------------------------ cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCAGTGCCCAGTGAGCACAGCGCAGTCTCAGTTTTCCCTCAGGCAAGTCTTCAATTCTTTCTTCAAgtgccgaaatgttttgtctgcacttt #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTGAGC-GTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagcgCTGGCTGAGATCCTAAGTCGTGAAGGACA-CAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACtgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from CESAR ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagcgCTGGCTGAGATCCTAAGTCGTGAAGGACACAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACtgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTCGTGAAGGACACAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTCGTGAAGGACACAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Pairagon CCCTGGCTGAGATCCTGAG-CGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTCGTGAAGGACA-CAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTCGTGAAGGACACAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTCGTGAAGGACACAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from GeneWise CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTCGTGAAGGACACAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGC-AACCAGGACAACGAAGATGAGTGGc gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCCAATCAAG-TAATGAAGATGAGTGGcgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from CESAR GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCCAATCAAGTAATGAAGATGAGTGGcgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from Spaln_aa2Genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCCAATCAAGTAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from Spaln_nt2Genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCCAATCAAGTAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from Pairagon ----------------------------------------------------GGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAA--------CGAAGATGAGTGGC GAGCCAGAGGCCTGCCAGTACCCAGCCCCATCCTCTTTCTCTTTTTCCAGGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGC--------CAATCAAGTAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCCAATCAAGTAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from Exonerate_coding2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccagaggcctgccagtacccagccccatcctctttctctttttccagGGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCCAATCAAGTAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg Alignment from GeneWise GCGGAGGTGGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagccagaggcctgccagtacccagccccatcctctttctctttttccag---------GGGGAGATAATCGAGGGATGCCGCCTGCCTGTCCTTCGGCGCCAATCAAGTAATGAAGATGAGTGGCgtgagggttctctgggggccagtccgaagaagctgagggcggggggcagg #### Kcnip2_ID9606_6 --> 2 - 0 Original Alignment acTCCAGCAACTACGCTACTTTTCTCTTC-AATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagacTCCAGCAACTACGCTACTTTCCTCTTCCAATG-CTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from CESAR acTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagacTCCAGCAACTACGCTACTTTCCTCTTCCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from Spaln_aa2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCTTCCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from Spaln_nt2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCTTCCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from Pairagon ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCTTCCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from Exonerate_protein2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCTTCCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from Exonerate_coding2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCTTCCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from GeneWise ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCTTCCAATGCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATCCAGCGGGGT-GGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagatTTTAATGTTGAATATATCCAGCAGGGTCGGGCTGAGAG-CCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaggtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from CESAR atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagatTTTAATGTTGAATATATCCAGCAGGGTCGGGCTGAGAGCCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaggtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTCGGGCTGAGAGCCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTCGGGCTGAGAGCCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Pairagon ATTTTAATGTAGAGTATATCCAGCGGGGT-GGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTCGGGCTGAGAG-CCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTCGGGCTGAGAGCCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTCGGGCTGAGAGCCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTCGGGCTGAGAGCCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAAATTGATGTTTAC-CGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc acttgcgtgatagaccttcacagttcctaattgttctcttacatcactagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCCGAAGTG-TGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCCgtgtgagcaacaacttctcaagtttagaagatatgtatgtgtgtatatgctg Alignment from CESAR GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc acttgcgtgatagaccttcacagttcctaattgttctcttacatcactagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCCGAAGTGTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCCgtgtgagcaacaacttctcaagtttagaagatatgtatgtgtgtatatgctg Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttgcgtgatagaccttcacagttcctaattgttctcttacatcactagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCCGAAGTGTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCCGTgtgagcaacaacttctcaagtttagaagatatgtatgtgtgtatatgctg Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttgcgtgatagaccttcacagttcctaattgttctcttacatcactagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCCGAAGTGTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCCGTgtgagcaacaacttctcaagtttagaagatatgtatgtgtgtatatgctg Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAAATTGATGTTTA-CCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttgcgtgatagaccttcacagttcctaattgttctcttacatcactagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCCGAAGTG-TGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCCGTgtgagcaacaacttctcaagtttagaagatatgtatgtgtgtatatgctg Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttgcgtgatagaccttcacagttcctaattgttctcttacatcactagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCCGAAGTGTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCCGTgtgagcaacaacttctcaagtttagaagatatgtatgtgtgtatatgctg Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttgcgtgatagaccttcacagttcctaattgttctcttacatcactagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCCGAAGTGTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCCGTgtgagcaacaacttctcaagtttagaagatatgtatgtgtgtatatgctg Alignment from GeneWise GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttgcgtgatagaccttcacagttcctaattgttctcttacatcactagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTACCCGAAGTGTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCCGTgtgagcaacaacttctcaagtttagaagatatgtatgtgtgtatatgctg #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGT-GAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCCAGAAAA-CTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCCAGAAAACTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Spaln_aa2Genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccagGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCCAGAAAACTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Spaln_nt2Genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccagGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCCAGAAAACTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCCAGAAAACTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Exonerate_protein2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccagGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCCAGAAAACTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Exonerate_coding2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccagGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCCAGAAAACTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccagGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCCAGAAAACTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCT-GGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagaTTGTCACTATGTGATCTTGCTCGGTTCAGAAC-AAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAaagtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagaTTGTCACTATGTGATCTTGCTCGGTTCAGAACAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAaagtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTCGGTTCAGAACAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTCGGTTCAGAACAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Pairagon ATTGTCTCTATGTGATCTTGCT-GGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTCGGTTCAGAAC-AAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTCGGTTCAGAACAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTCGGTTCAGAACAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTCGGTTCAGAACAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa #### Kif20b_ID7006_11 --> 1 - 0 Original Alignment gGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGAT-GAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaaggGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATCGAGA-TCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from CESAR gGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaaggGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATCGAGATCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Spaln_aa2Genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATCGAGATCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Spaln_nt2Genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATCGAGATCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Pairagon GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGAT-GAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATCGAGAT-CTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Exonerate_protein2genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATCGAGATCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Exonerate_coding2genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATCGAGATCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from GeneWise GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATCGAGATCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga #### Klc2_ID852_14 --> 1 - 0 Original Alignment gATGAAGAGGGCCAGCTCTCTTAAC-TTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG aatccatctcatatcatatcactaaagccttttcttcttactttcttcaggATGAAGAGGGCCAGCTCTCTTAACCTTCC-TAATAAGAGTGTCAGGAAGCCC---CAGgtaaggatgaggggctactgatactaagcagcctagacttgcagacgcag Alignment from CESAR gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG aatccatctcatatcatatcactaaagccttttcttcttactttcttcaggATGAAGAGGGCCAGCTCTCTTAACCTTCCTAATAAGAGTGTCAGGAAGCCC---CAGgtaaggatgaggggctactgatactaagcagcctagacttgcagacgcag Alignment from Spaln_aa2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG aatccatctcatatcatatcactaaagccttttcttcttactttcttcagGATGAAGAGGGCCAGCTCTCTTAACCTTCCTAATAAGAGTGTCAGGAAGCCC---CAGgtaaggatgaggggctactgatactaagcagcctagacttgcagacgcag Alignment from Spaln_nt2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG aatccatctcatatcatatcactaaagccttttcttcttactttcttcagGATGAAGAGGGCCAGCTCTCTTAACCTTCCTAATAAGAGTGTCAGGAAGCC---CCAGgtaaggatgaggggctactgatactaagcagcctagacttgcagacgcag Alignment from Pairagon GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGT--GGAAGAGCCAG aatccatctcatatcatatcactaaagccttttcttcttactttcttcagGATGAAGAGGGCCAGCTCTCTTAACCTTCCTAATAAGAGTGTCAGGAAGCCCCAGgtaaggatgaggggctactgatactaagcagcctagacttgcagacgcag Alignment from Exonerate_protein2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG aatccatctcatatcatatcactaaagccttttcttcttactttcttcagGATGAAGAGGGCCAGCTCTCTTAACCTTCCTAATAAGAGTGTCAGGAAGCCC---CAGgtaaggatgaggggctactgatactaagcagcctagacttgcagacgcag Alignment from Exonerate_coding2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG aatccatctcatatcatatcactaaagccttttcttcttactttcttcagGATGAAGAGGGCCAGCTCTCTTAACCTTCCTAATAAGAGTGTCAGGAAGCCC---CAGgtaaggatgaggggctactgatactaagcagcctagacttgcagacgcag Alignment from GeneWise GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG aatccatctcatatcatatcactaaagccttttcttcttactttcttcagGATGAAGAGGGCCAGCTCTCTTAACCTTCCTAATAAGAGTGTCAGGAAGCCC---CAGgtaaggatgaggggctactgatactaagcagcctagacttgcagacgcag #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAAC-CTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaattgtggtaattctgaatggaaacgctttgttcccacagGTCCTCGGCAAGTTTCACCCAGATGTGGCTAAGCAGCTCAGCAACCCTGGCCTTGC-GTGCCAGAATCAGGGCAAAGCTGAAGAGGTGGAATACTACTACCAGAGAGGCCTAGAGATCTATGCCACACGCCTTAGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgttgggtgtagtggtgtgggaagctgataaggaaggaagcagggacagat Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaattgtggtaattctgaatggaaacgctttgttcccacagGTCCTCGGCAAGTTTCACCCAGATGTGGCTAAGCAGCTCAGCAACCCTGGCCTTGCGTGCCAGAATCAGGGCAAAGCTGAAGAGGTGGAATACTACTACCAGAGAGGCCTAGAGATCTATGCCACACGCCTTAGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgttgggtgtagtggtgtgggaagctgataaggaaggaagcagggacagat Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaattgtggtaattctgaatggaaacgctttgttcccacagGTCCTCGGCAAGTTTCACCCAGATGTGGCTAAGCAGCTCAGCAACCCTGGCCTTGCGTGCCAGAATCAGGGCAAAGCTGAAGAGGTGGAATACTACTACCAGAGAGGCCTAGAGATCTATGCCACACGCCTTAGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgttgggtgtagtggtgtgggaagctgataaggaaggaagcagggacagat Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaattgtggtaattctgaatggaaacgctttgttcccacagGTCCTCGGCAAGTTTCACCCAGATGTGGCTAAGCAGCTCAGCAACCCTGGCCTTGCGTGCCAGAATCAGGGCAAAGCTGAAGAGGTGGAATACTACTACCAGAGAGGCCTAGAGATCTATGCCACACGCCTTAGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgttgggtgtagtggtgtgggaagctgataaggaaggaagcagggacagat Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAA-CCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaattgtggtaattctgaatggaaacgctttgttcccacagGTCCTCGGCAAGTTTCACCCAGATGTGGCTAAGCAGCTCAGCAACCCTGGCCTTGC-GTGCCAGAATCAGGGCAAAGCTGAAGAGGTGGAATACTACTACCAGAGAGGCCTAGAGATCTATGCCACACGCCTTAGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgttgggtgtagtggtgtgggaagctgataaggaaggaagcagggacagat Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaattgtggtaattctgaatggaaacgctttgttcccacagGTCCTCGGCAAGTTTCACCCAGATGTGGCTAAGCAGCTCAGCAACCCTGGCCTTGCGTGCCAGAATCAGGGCAAAGCTGAAGAGGTGGAATACTACTACCAGAGAGGCCTAGAGATCTATGCCACACGCCTTAGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgttgggtgtagtggtgtgggaagctgataaggaaggaagcagggacagat Alignment from Exonerate_coding2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaattgtggtaattctgaatggaaacgctttgttcccacagGTCCTCGGCAAGTTTCACCCAGATGTGGCTAAGCAGCTCAGCAACCCTGGCCTTGCGTGCCAGAATCAGGGCAAAGCTGAAGAGGTGGAATACTACTACCAGAGAGGCCTAGAGATCTATGCCACACGCCTTAGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgttgggtgtagtggtgtgggaagctgataaggaaggaagcagggacagat Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaattgtggtaattctgaatggaaacgctttgttcccacagGTCCTCGGCAAGTTTCACCCAGATGTGGCTAAGCAGCTCAGCAACCCTGGCCTTGCGTGCCAGAATCAGGGCAAAGCTGAAGAGGTGGAATACTACTACCAGAGAGGCCTAGAGATCTATGCCACACGCCTTAGTCCTGAAGACCCCAATGTGGCAAAGACCAAGAACAACCTGgttgggtgtagtggtgtgggaagctgataaggaaggaagcagggacagat #### Klc2_ID860_6 --> 0 - 0 Original Alignment GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGC-AAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGCCAAGTACCAAG-AGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from CESAR GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGCCAAGTACCAAGAGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from Spaln_aa2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGCCAAGTACCAAGAGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from Spaln_nt2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGCCAAGTACCAAGAGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from Pairagon GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGG-CAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGCCAAGTACCAAGA-GCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from Exonerate_protein2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGCCAAGTACCAAGAGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from Exonerate_coding2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGCCAAGTACCAAGAGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat Alignment from GeneWise GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG ctgcctgctagggccctgaatgaagacaaccatgttctctctgaacccagGTGGCCGCAACCCTCAATAATCTGGCTGTGCTTTATGGCAAACGGGGCCAAGTACCAAGAGCTGAGCCACTGTGCAAGAGGGCACTTGAAATCCGAGAGAAGgtgagtacaggtacgacagcatggcaagagtgccaagcaaacagtagaat #### Klc2_ID861_5 --> 1 - 0 Original Alignment gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTG-GGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagaGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGCGGCA-GGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from CESAR gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagaGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGCGGCAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Spaln_aa2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGCGGCAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Spaln_nt2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGCGGCAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Pairagon GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGCGGCAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Exonerate_protein2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGCGGCAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Exonerate_coding2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGCGGCAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from GeneWise GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGCGGCAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAA-GACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ccgatacatctgctgctcaggccaacaaccttttgcctttctggttgcagAAGGAGAAGGGTGATGTCCCCAAACGACTCCC-CGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAggtatgtaggggcaattagctatggcaattagctatgagttcggagagggt Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ccgatacatctgctgctcaggccaacaaccttttgcctttctggttgcagAAGGAGAAGGGTGATGTCCCCAAACGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAggtatgtaggggcaattagctatggcaattagctatgagttcggagagggt Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccgatacatctgctgctcaggccaacaaccttttgcctttctggttgcagAAGGAGAAGGGTGATGTCCCCAAACGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtatgtaggggcaattagctatggcaattagctatgagttcggagagggt Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccgatacatctgctgctcaggccaacaaccttttgcctttctggttgcagAAGGAGAAGGGTGATGTCCCCAAACGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtatgtaggggcaattagctatggcaattagctatgagttcggagagggt Alignment from Pairagon GAGGAGAAGGGTGATGTCCCCAAA-GACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccgatacatctgctgctcaggccaacaaccttttgcctttctggttgcagAAGGAGAAGGGTGATGTCCCCAAACGACTCCCC-GACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtatgtaggggcaattagctatggcaattagctatgagttcggagagggt Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccgatacatctgctgctcaggccaacaaccttttgcctttctggttgcagAAGGAGAAGGGTGATGTCCCCAAACGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtatgtaggggcaattagctatggcaattagctatgagttcggagagggt Alignment from Exonerate_coding2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccgatacatctgctgctcaggccaacaaccttttgcctttctggttgcagAAGGAGAAGGGTGATGTCCCCAAACGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtatgtaggggcaattagctatggcaattagctatgagttcggagagggt Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccgatacatctgctgctcaggccaacaaccttttgcctttctggttgcagAAGGAGAAGGGTGATGTCCCCAAACGACTCCCCGACGACCTGTTTCCCAATGAAGATGAACAGAGGTCAGgtatgtaggggcaattagctatggcaattagctatgagttcggagagggt #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTG-GATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTACGATCAAC-GTCCAAAAACATTACTCGATGTGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTACGATCAACGTCCAAAAACATTACTCGATGTGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTACGATCAACGTCCAAAAACATTACTCGATGTGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTACGATCAACGTCCAAAAACATTACTCGATGTGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Pairagon GCCCAGGACCCCCAGATGCTG-GATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTACGATCAAC-GTCCAAAAACATTACTCGATGTGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTACGATCAACGTCCAAAAACATTACTCGATGTGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTACGATCAACGTCCAAAAACATTACTCGATGTGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTACGATCAACGTCCAAAAACATTACTCGATGTGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat #### Ldb1_ID9694_6 --> 2 - 0 Original Alignment ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATG-GTGACCCAGCACGGCAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCAGC-TGGCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from CESAR ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCAGCTGGCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from Spaln_aa2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCAGCTGGCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from Spaln_nt2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCAGCTGGCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from Pairagon CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATG-GTGACCCAGCACGGCAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCAGC-TGGCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from Exonerate_protein2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCAGCTGGCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from Exonerate_coding2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCAGCTGGCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from GeneWise CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGCGTGACCCAGCTGGCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga #### Ldb1_ID9697_3 --> 1 - 2 Original Alignment cCCAACTCCCATGTACCCACCT-ACATACCTGGAGCCTGGGATCgg agtcagttttctgttccatggtcactctggaattttcttgccattcacagcCCAACTCCCATGTACCCACCTCACATACC-GGAGCCTGGGATCgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from CESAR cCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCgg agtcagttttctgttccatggtcactctggaattttcttgccattcacagcCCAACTCCCATGTACCCACCTCACATACCGGAGCCTGGGATCgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Spaln_aa2Genome agtcagttttctgttccatggtcactctggaattttcttgccattcacagcccaactcccatgtacccacctcacataccggagcctgggatcgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Spaln_nt2Genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtcagttttctgttccatggtcactctggaattttcttgccattcacagCCCAACTCCCATGTACCCACCTCACATACCGGAGCCTGGGATCGGgtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Pairagon agtcagttttctgttccatggtcactctggaattttcttgccattcacagcccaactcccatgtacccacctcacataccggagcctgggatcgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Exonerate_protein2genome agtcagttttctgttccatggtcactctggaattttcttgccattcacagcccaactcccatgtacccacctcacataccggagcctgggatcgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Exonerate_coding2genome agtcagttttctgttccatggtcactctggaattttcttgccattcacagcccaactcccatgtacccacctcacataccggagcctgggatcgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from GeneWise CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtcagttttctgttccatggtcactctggaattttcttgccattcacagCCCAACTCCCATGTACCCACCTCACATACCGGAGCCTGGGATCGGgtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTC-GGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCA-TCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcaaa Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCATCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcact Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCATCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcaaa Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCATCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcaaa Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCT-CGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCA-TCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcaaa Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCATCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcaaa Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCATCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcaaa Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCATCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcaaa #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagctGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGA-CACACGTTTAACCCACCAGCTTTGCTGCTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagctGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACACACGTTTAACCCACCAGCTTTGCTGCTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACACACGTTTAACCCACCAGCTTTGCTGCTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACACACGTTTAACCCACCAGCTTTGCTGCTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAG-CACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGA-CACACGTTTAACCCACCAGCTTTGCTGCTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACACACGTTTAACCCACCAGCTTTGCTGCTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACACACGTTTAACCCACCAGCTTTGCTGCTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcaacatcagaagaaatggggcagctcgcgcccgcatctgtcttcgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCCACCCTCTGACACACGTTTAACCCACCAGCTTTGCTGCTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaagatagaagctccttgggaatgatttaaggacaggacaaaattgtgt #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCC-ACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCCACTA-CACCACCTCACCCCCTCGGCCTTACCTAggtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from CESAR CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCCACTACACCACCTCACCCCCTCGGCCTTACCTAggtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCCACTACACCACCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCCACTACACCACCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Pairagon CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCCACTACACCACCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCCACTACACCACCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Exonerate_coding2genome GAGTGACCATGGATCCA------CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagGGTGTTTCTGCCCACCGCTTTAGCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCCACTACACCACCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from GeneWise CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCCACTACACCACCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGC-TTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg accagccttgttgaccccagccatgcttttcttttgctcaccatccgtagacATCGACGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCCTTCA-GTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACCTGTCGTggtaagacagatctgattccacctaaagggggggcctctcctggatagagt Alignment from CESAR acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg accagccttgttgaccccagccatgcttttcttttgctcaccatccgtagacATCGACGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCCTTCAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACCTGTCGTggtaagacagatctgattccacctaaagggggggcctctcctggatagagt Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttttcttttgctcaccatccgtagACATCGACGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCCTTCAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACCTGTCGTGgtaagacagatctgattccacctaaagggggggcctctcctggatagagt Alignment from Spaln_nt2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttttcttttgctcaccatccgtagACATCGACGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCCTTCAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACCTGTCGTGgtaagacagatctgattccacctaaagggggggcctctcctggatagagt Alignment from Pairagon ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttttcttttgctcaccatccgtagACATCGACGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCCTTCAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACCTGTCGTGgtaagacagatctgattccacctaaagggggggcctctcctggatagagt Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttttcttttgctcaccatccgtagACATCGACGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCCTTCAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACCTGTCGTGgtaagacagatctgattccacctaaagggggggcctctcctggatagagt Alignment from Exonerate_coding2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttttcttttgctcaccatccgtagACATCGACGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCCTTCAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACCTGTCGTGgtaagacagatctgattccacctaaagggggggcctctcctggatagagt Alignment from GeneWise ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttttcttttgctcaccatccgtagACATCGACGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCCTTCAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACCTGTCGTGgtaagacagatctgattccacctaaagggggggcctctcctggatagagt #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAG-ATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgtatagggccactgggaactaatggaatccccatatttgtagacATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGG-GGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAACCTGCTAGAGTGCGTGggtaagtcggattacagtgctactcagggaaccagctgaactcccttttca Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgtatagggccactgggaactaatggaatccccatatttgtagacATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAACCTGCTAGAGTGCGTGggtaagtcggattacagtgctactcagggaaccagctgaactccctgtgtg Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgggaactaatggaatccccatatttgtagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAACCTGCTAGAGTGCGTGGgtaagtcggattacagtgctactcagggaaccagctgaactcccttttca Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgggaactaatggaatccccatatttgtagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAACCTGCTAGAGTGCGTGGgtaagtcggattacagtgctactcagggaaccagctgaactcccttttca Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAG-ATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgggaactaatggaatccccatatttgtagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGG-GGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAACCTGCTAGAGTGCGTGGgtaagtcggattacagtgctactcagggaaccagctgaactcccttttca Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgggaactaatggaatccccatatttgtagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAACCTGCTAGAGTGCGTGGgtaagtcggattacagtgctactcagggaaccagctgaactcccttttca Alignment from Exonerate_coding2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgggaactaatggaatccccatatttgtagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAACCTGCTAGAGTGCGTGGgtaagtcggattacagtgctactcagggaaccagctgaactcccttttca Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgggaactaatggaatccccatatttgtagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAACCTGCTAGAGTGCGTGGgtaagtcggattacagtgctactcagggaaccagctgaactcccttttca #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCA-CGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACCGCCCAGGCG-GGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAggtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACCGCCCAGGCGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAggtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Spaln_aa2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACCGCCCAGGCGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Spaln_nt2Genome GTCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagCTCACTCGCAGACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACCGCCCAGGCGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACCGCCCAGGCGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Exonerate_protein2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACCGCCCAGGCGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Exonerate_coding2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACCGCCCAGGCGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from GeneWise ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACCGCCCAGGCGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCAGAA-GTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccaggcTACCCTAATGAGGAGGCTGCAGAACGTAG-GCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccaggcTACCCTAATGAGGAGGCTGCAGAACGTAGGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTGCAGAACGTAGGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTGCAGAACGTAGGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAA-GTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTGCAGAACGTAG-GCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTGCAGAACGTAGGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from Exonerate_coding2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTGCAGAACGTAGGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca Alignment from GeneWise GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG cagggtggggccagatatgaattcacagtcttctctgggttcctccccagGCTACCCTAATGAGGAGGCTGCAGAACGTAGGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtacgtccagacagaagttagcagtggaccacctgagcttgggtgccaca #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGC-CTTCCCCATTATTTCCCAGTAg gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCCTTCCCC-TTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatctttttttttttacaat Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCCTTCCCCTTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatcttttggtgtcctcttc Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCCTTCCCCTTATTTCCCAGTAGgtaggaacccattcctcctatgctcttggacatctttttttttttacaat Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCCTTCCCCTTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatctttttttttttacaat Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCCTTCCCCTTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatctttttttttttacaat Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCCTTCCCCTTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatctttttttttttacaat Alignment from Exonerate_coding2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCCTTCCCCTTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatctttttttttttacaat Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCCTTCCCCTTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatctttttttttttacaat #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGT-GTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccctggttgtaggtgcacattcttccctttcttttgtctcagcTTTGGAGTGCTGCTGTGGGAGCTGCTGACTGGGAAGGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTATATGGTCGTGG-TGTAAACAAATTAACATTACCCATCCCATCTACTTGCCCTGAGCCCTTCGCACAACTCATGGCTggtgagtgagatggggttgtggaggtgaggggcaagcctcccaacccagcc Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccctggttgtaggtgcacattcttccctttcttttgtctcagcTTTGGAGTGCTGCTGTGGGAGCTGCTGACTGGGAAGGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTATATGGTCGTGGTGTAAACAAATTAACATTACCCATCCCATCTACTTGCCCTGAGCCCTTCGCACAACTCATGGCTggtgagtgagatggggttgtggaggtgaggggcaagcctcccaacccagcc Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccctggttgtaggtgcacattcttccctttcttttgtctcagCTTTGGAGTGCTGCTGTGGGAGCTGCTGACTGGGAAGGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTATATGGTCGTGGTGTAAACAAATTAACATTACCCATCCCATCTACTTGCCCTGAGCCCTTCGCACAACTCATGGCTGgtgagtgagatggggttgtggaggtgaggggcaagcctcccaacccagcc Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccctggttgtaggtgcacattcttccctttcttttgtctcagCTTTGGAGTGCTGCTGTGGGAGCTGCTGACTGGGAAGGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTATATGGTCGTGGTGTAAACAAATTAACATTACCCATCCCATCTACTTGCCCTGAGCCCTTCGCACAACTCATGGCTGgtgagtgagatggggttgtggaggtgaggggcaagcctcccaacccagcc Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccctggttgtaggtgcacattcttccctttcttttgtctcagCTTTGGAGTGCTGCTGTGGGAGCTGCTGACTGGGAAGGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTATATGGTCGTGGTGTAAACAAATTAACATTACCCATCCCATCTACTTGCCCTGAGCCCTTCGCACAACTCATGGCTGgtgagtgagatggggttgtggaggtgaggggcaagcctcccaacccagcc Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccctggttgtaggtgcacattcttccctttcttttgtctcagCTTTGGAGTGCTGCTGTGGGAGCTGCTGACTGGGAAGGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTATATGGTCGTGGTGTAAACAAATTAACATTACCCATCCCATCTACTTGCCCTGAGCCCTTCGCACAACTCATGGCTGgtgagtgagatggggttgtggaggtgaggggcaagcctcccaacccagcc Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccctggttgtaggtgcacattcttccctttcttttgtctcagCTTTGGAGTGCTGCTGTGGGAGCTGCTGACTGGGAAGGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTATATGGTCGTGGTGTAAACAAATTAACATTACCCATCCCATCTACTTGCCCTGAGCCCTTCGCACAACTCATGGCTGgtgagtgagatggggttgtggaggtgaggggcaagcctcccaacccagcc Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccctggttgtaggtgcacattcttccctttcttttgtctcagCTTTGGAGTGCTGCTGTGGGAGCTGCTGACTGGGAAGGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTATATGGTCGTGGTGTAAACAAATTAACATTACCCATCCCATCTACTTGCCCTGAGCCCTTCGCACAACTCATGGCTGgtgagtgagatggggttgtggaggtgaggggcaagcctcccaacccagcc #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTG-CGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagacTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGA-GCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagacTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGAGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGAGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGAGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGAGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGAGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGAGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG cctcccaacccagccacaatgttcacagttgtctcttgtctacttggcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCCACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCCGGGAGAGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtatgaaggatgtgggacacaagggggggtagaggatagggtgggggtct #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAG-CAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCCAGGTGG-TCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGggtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCCAGGTGGTCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGggtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCCAGGTGGTCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGC-AGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCCAGGTGG-TCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAG-CAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCCAGGTGG-TCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCCAGGTGGTCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCCAGGTGGTCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCCAGGTGGTCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAA-GATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagtgGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAACGATTCTA-CAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagtgGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAACGATTCTACAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAACGATTCTACAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAACGATTCTACAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAA-GATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAACGATTCTA-CAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAACGATTCTACAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAACGATTCTACAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAACGATTCTACAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCT-CTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ataccatttaggcactgaacaatgcatgggacttctcttgtgtctttcagggGACGACATCAGCTCTCCTTC-GCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCaggtgagcctgtttatccctctcaccctccggtgtccattgtgccacctgac Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ataccatttaggcactgaacaatgcatgggacttctcttgtgtctttcagggGACGACATCAGCTCTCCTTCGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCaggtgagcctgtttatccctctcaccctccggtgtccattgtgccactaccc Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgggacttctcttgtgtctttcagGGGACGACATCAGCTCTCCTTCGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgagcctgtttatccctctcaccctccggtgtccattgtgccacctgac Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgggacttctcttgtgtctttcagGGGACGACATCAGCTCTCCTTCGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgagcctgtttatccctctcaccctccggtgtccattgtgccacctgac Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgggacttctcttgtgtctttcagGGGACGACATCAGCTCTCCTTCGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgagcctgtttatccctctcaccctccggtgtccattgtgccacctgac Alignment from Exonerate_protein2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgggacttctcttgtgtctttcagGGGACGACATCAGCTCTCCTTCGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgagcctgtttatccctctcaccctccggtgtccattgtgccacctgac Alignment from Exonerate_coding2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgggacttctcttgtgtctttcagGGGACGACATCAGCTCTCCTTCGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgagcctgtttatccctctcaccctccggtgtccattgtgccacctgac Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgggacttctcttgtgtctttcagGGGACGACATCAGCTCTCCTTCGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgagcctgtttatccctctcaccctccggtgtccattgtgccacctgac #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGA-GGGTCACTGCAGGAGATTTACCACg ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttaggAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGACGGGTCAC-ACAGGAGGTTTACCATggtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from CESAR gAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttaggAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGACGGGTCACACAGGAGGTTTACCATggtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from Spaln_aa2Genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttagGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGACGGGTCACACAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from Spaln_nt2Genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGA-GGGTCACTGCAGGAGATTTACCACG ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttagGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGACGGGTCAC-ACAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from Pairagon GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGA-GGGTCACTGCAGGAGATTTACCACG ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttagGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGACGGGTCAC-ACAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from Exonerate_protein2genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttagGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGACGGGTCACACAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from Exonerate_coding2genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG ctctcaccctccggtgtccattgtgccactaccctgcacccacaccttagGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGACGGGTCACACAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg Alignment from GeneWise ---------------------------------------------CTCAGGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG CTCTCACCCTCCGGTGTCCATTGTGCCACTACCCTGCACCCACACCTTAGGAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGACGGGTCACACAGGAGGTTTACCATGgtatataccagactccatggacctggccttccctgattccaatatagggg #### Map4k2_ID1625_5 --> 2 - 0 Original Alignment ccACTGGGCCCCTGGAAGAACGGCAGATTGCC-TATGTTTGCCGGGAGGCACTGAAG cttcaagatctcaaggtccttctattcatcctcccgcttctcctttgtagccACTGGGCCCTTGGAAGAACGGCAGATTGCCCTATGTTTGCC-GGAGGCACTGAGGgtatttgacttgcaaacagcacccatttgggaaccctcagaaatgtgggc Alignment from CESAR ccACTGGGCCCCTGGAAGAACGGCAGATTGCC-TATGTTTGCCGGGAGGCACTGAAG cttcaagatctcaaggtccttctattcatcctcccgcttctcctttgtagccACTGGGCCCTTGGAAGAACGGCAGATTGCCCTATGTTTGCC-GGAGGCACTGAGGgtatttgacttgcaaacagcacccatttgggaaccctcagaaatgtgggc Alignment from Spaln_aa2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatctcaaggtccttctattcatcctcccgcttctcctttgtagCCACTGGGCCCTTGGAAGAACGGCAGATTGCCCTATGTTTGCCGGAGGCACTGAGGgtatttgacttgcaaacagcacccatttgggaaccctcagaaatgtgggc Alignment from Spaln_nt2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCC-TATGTTTGCCGGGAGGCACTGAAG cttcaagatctcaaggtccttctattcatcctcccgcttctcctttgtagCCACTGGGCCCTTGGAAGAACGGCAGATTGCCCTATGTTTGCC-GGAGGCACTGAGGgtatttgacttgcaaacagcacccatttgggaaccctcagaaatgtgggc Alignment from Pairagon CCACTGGGCCCCTGGAAGAACGGCAGATTG-CCTATGTTTGCCGGGAGGCACTGAAG cttcaagatctcaaggtccttctattcatcctcccgcttctcctttgtagCCACTGGGCCCTTGGAAGAACGGCAGATTGCCCTATGTTTGCC-GGAGGCACTGAGGgtatttgacttgcaaacagcacccatttgggaaccctcagaaatgtgggc Alignment from Exonerate_protein2genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatctcaaggtccttctattcatcctcccgcttctcctttgtagCCACTGGGCCCTTGGAAGAACGGCAGATTGCCCTATGTTTGCCGGAGGCACTGAGGgtatttgacttgcaaacagcacccatttgggaaccctcagaaatgtgggc Alignment from Exonerate_coding2genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatctcaaggtccttctattcatcctcccgcttctcctttgtagCCACTGGGCCCTTGGAAGAACGGCAGATTGCCCTATGTTTGCCGGAGGCACTGAGGgtatttgacttgcaaacagcacccatttgggaaccctcagaaatgtgggc Alignment from GeneWise CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTTGCCGGGAGGCACTGAAG cttcaagatctcaaggtccttctattcatcctcccgcttctcctttgtagCCACTGGGCCCTTGGAAGAACGGCAGATTGCCCTATGTTTGCCGGAGGCACTGAGGgtatttgacttgcaaacagcacccatttgggaaccctcagaaatgtgggc #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGT-TCTTTCATTGGCACTCCATACtg gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagcaGATTTCGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGAGACATCTCTTTCA-TGGCACTCCATACtggtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagcaGATTTCGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGAGACATCTCTTTCATGGCACTCCATACtggtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGAGACATCTCTTTCATGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGAGACATCTCTTTCATGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from Pairagon CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGT-TCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGAGACATCTCTTTCA-TGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGAGACATCTCTTTCATGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGAGACATCTCTTTCATGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggccctgggtctgattttatatttccaaaacagCAGATTTCGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGAGACATCTCTTTCATGGCACTCCATACTGgtacgttgttccatggcaatgggtaaagggcatatggagaggacacccag #### Map4k2_ID1635_14 --> 2 - 0 Original Alignment ttCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAG-GAGACAGATCCTCTCAATGAACCG ctcactctgagacttggaactccttttaggagtgttccatttgttttcagttCACCAAGTGGAATTTGGTGCTCCTCATCGGAAGCGAGACAGACC-TCTAAATGAACCAgtattgcactgactaatatttgtgtagtggggtccaggggagggaggcct Alignment from CESAR ttCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG ctcactctgagacttggaactccttttaggagtgttccatttgttttcagttCACCAAGTGGAATTTGGTGCTCCTCATCGGAAGCGAGACAGACCTCTAAATGAACCAgtattgcactgactaatatttgtgtagtggggtccaggggagggaggcct Alignment from Spaln_aa2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG ctcactctgagacttggaactccttttaggagtgttccatttgttttcagTTCACCAAGTGGAATTTGGTGCTCCTCATCGGAAGCGAGACAGACCTCTAAATGAACCAgtattgcactgactaatatttgtgtagtggggtccaggggagggaggcct Alignment from Spaln_nt2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG ctcactctgagacttggaactccttttaggagtgttccatttgttttcagTTCACCAAGTGGAATTTGGTGCTCCTCATCGGAAGCGAGACAGACCTCTAAATGAACCAgtattgcactgactaatatttgtgtagtggggtccaggggagggaggcct Alignment from Pairagon TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAG-GAGACAGATCCTCTCAATGAACCG ctcactctgagacttggaactccttttaggagtgttccatttgttttcagTTCACCAAGTGGAATTTGGTGCTCCTCATCGGAAGCGAGACAGA-CCTCTAAATGAACCAgtattgcactgactaatatttgtgtagtggggtccaggggagggaggcct Alignment from Exonerate_protein2genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG ctcactctgagacttggaactccttttaggagtgttccatttgttttcagTTCACCAAGTGGAATTTGGTGCTCCTCATCGGAAGCGAGACAGACCTCTAAATGAACCAgtattgcactgactaatatttgtgtagtggggtccaggggagggaggcct Alignment from Exonerate_coding2genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG ctcactctgagacttggaactccttttaggagtgttccatttgttttcagTTCACCAAGTGGAATTTGGTGCTCCTCATCGGAAGCGAGACAGACCTCTAAATGAACCAgtattgcactgactaatatttgtgtagtggggtccaggggagggaggcct Alignment from GeneWise TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG ctcactctgagacttggaactccttttaggagtgttccatttgttttcagTTCACCAAGTGGAATTTGGTGCTCCTCATCGGAAGCGAGACAGACCTCTAAATGAACCAgtattgcactgactaatatttgtgtagtggggtccaggggagggaggcct #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCCTGGGAA-AGAGGAACTGAGTgggtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from CESAR TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTgggtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Pairagon TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGCCATGGG-CTTCCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCCTTCCTC-CACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from CESAR CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCCTTCCTCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from Spaln_aa2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCCTTCCTCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCCTTCCTCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from Pairagon CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCCTTCCTCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from Exonerate_protein2genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCCTTCCTCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from Exonerate_coding2genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCCTTCCTCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from GeneWise gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagcggtcatcctgccatgggccttcctccacccctaaggtccatgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCC-AAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCCAAGG-CTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCCAAGGCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCCAAGGCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCCAAGGCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCCAAGGCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCCAAGGCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCCAAGGCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCCAAGGCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTAC-TGTGTGAACAATGTGTTGCTGTCGCTCTCAg TGGAGAAGgtgagtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACCTGTGTGAACA-TGTGTTGCTGTCACTCTCAggtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from CESAR TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg TGGAGAAGgtaattcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACCTGTGTGAACATGTGTTGCTGTCACTCTCAggtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Spaln_aa2Genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtgagtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACCTGTGTGAACATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Spaln_nt2Genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtgagtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACCTGTGTGAACATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Pairagon TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTA-CTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtgagtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACCTGTGTGAAC-ATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Exonerate_protein2genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtgagtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACCTGTGTGAACATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Exonerate_coding2genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtgagtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACCTGTGTGAACATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from GeneWise TGGAGAAG------------------------------------------CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGGTGAGTCTTGTTGGCCCTCCTGACCCTCTTCTTTGCCCACAGCTCATCTCTCAGCGCTGCTCGTGGCTCTACCTGTGTGAACATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt #### Map4k2_ID1650_29 --> 2 - 1 Original Alignment gcTGTGTGAGAATTGTTAACCTG-CAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGg tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcaggcTGTGTAAGGATTGTTAACCTACCAGGGGGAAC-TACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACCATTGAGACTGTGggtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from CESAR gcTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGg tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcaggcTGTGTAAGGATTGTTAACCTACCAGGGGGAACTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACCATTGAGACTGTGggtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from Spaln_aa2Genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACCAGGGGGAACTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from Spaln_nt2Genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACCAGGGGGAACTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from Pairagon GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACCAGGGGGAACTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from Exonerate_protein2genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACCAGGGGGAACTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from Exonerate_coding2genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACCAGGGGGAACTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from GeneWise GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACCAGGGGGAACTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa #### Map4k2_ID1651_30 --> 2 - 0 Original Alignment tgTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGC-ATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagtaTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCCATGC-AGGCCGAAGCCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from CESAR tgTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagtaTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCCATGCAGGCCGAAGCCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from Spaln_aa2Genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCCATGCAGGCCGAAGCCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from Spaln_nt2Genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCCATGCAGGCCGAAGCCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from Pairagon TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGG-CATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCCATGCA-GGCCGAAGCCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from Exonerate_protein2genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCCATGCAGGCCGAAGCCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from Exonerate_coding2genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCCATGCAGGCCGAAGCCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag Alignment from GeneWise TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagtcgtacagtgcagggatagtacagttaattctgctcaccgatctagTATGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATGGCCATGCAGGCCGAAGCCTTGATACCAATGAGgtaggtgaccctaggggtttaattacctccctgaggccctatcctgagag #### Map4k2_ID1652_31 --> 0 - 2 Original Alignment GTGACGCAGGAG-ATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACag tgagagggtcattgggatggcctcaggggctcttgctctcccgcctgcagGTGACACAGGAGCATAACAG-TGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACaggtatgggcaacaaacccgtaatttcagatgctgcctctaggctaggtttg Alignment from CESAR GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACag tgagagggtcattgggatggcctcaggggctcttgctctcccgcctgcagGTGACACAGGAGCATAACAGTGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACaggtatgggcaacaaacccgtaatttcagatgctgcctctaggctaggtttg Alignment from Spaln_aa2Genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG tgagagggtcattgggatggcctcaggggctcttgctctcccgcctgcagGTGACACAGGAGCATAACAGTGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtatgggcaacaaacccgtaatttcagatgctgcctctaggctaggtttg Alignment from Spaln_nt2Genome GTGACGCAGGAG-ATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG tgagagggtcattgggatggcctcaggggctcttgctctcccgcctgcagGTGACACAGGAGCATAACAG-TGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtatgggcaacaaacccgtaatttcagatgctgcctctaggctaggtttg Alignment from Pairagon GTGACGCAGGAG-ATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG tgagagggtcattgggatggcctcaggggctcttgctctcccgcctgcagGTGACACAGGAGCATAACAG-TGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtatgggcaacaaacccgtaatttcagatgctgcctctaggctaggtttg Alignment from Exonerate_protein2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG tgagagggtcattgggatggcctcaggggctcttgctctcccgcctgcagGTGACACAGGAGCATAACAGTGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtatgggcaacaaacccgtaatttcagatgctgcctctaggctaggtttg Alignment from Exonerate_coding2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG tgagagggtcattgggatggcctcaggggctcttgctctcccgcctgcagGTGACACAGGAGCATAACAGTGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtatgggcaacaaacccgtaatttcagatgctgcctctaggctaggtttg Alignment from GeneWise GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG tgagagggtcattgggatggcctcaggggctcttgctctcccgcctgcagGTGACACAGGAGCATAACAGTGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtatgggcaacaaacccgtaatttcagatgctgcctctaggctaggtttg #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCC-AGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCCAGCA-CACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCCAGCACACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCCAGCACACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCCAGCACACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCCAGCACACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCCAGCACACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCCAGCACACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCCAGCACACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTGCAG-TACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCAGCTACTGTC-CCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from CESAR ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCAGCTACTGTCCCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from Spaln_aa2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCAGCTACTGTCCCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCAGCTACTGTCCCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from Pairagon ATAGTGTCTGCTGTGCAG-TACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCAGCTACTGTC-CCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCAGCTACTGTCCCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCAGCTACTGTCCCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from GeneWise ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCAGCTACTGTCCCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCT-CGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctaggaGAGGTGTTTGATTACCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCCGAG-CAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from CESAR gaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctaggaGAGGTGTTTGATTACCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCCGAGCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCCGAGCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCCGAGCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from Pairagon GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCCGAGCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCCGAGCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCCGAGCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAAGCTCCGAGCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac #### Mark2_ID2116_5 --> 2 - 1 Original Alignment ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTC-ATGGAGTATGCCAGTGGCg aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagttAAGTGGTTTGAGGTCATTGATACTGAGAAGACACTCTACCTTGTTCATGG-GTATGCCAGTGGTggtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from CESAR ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagttAAGTGGTTTGAGGTCATTGATACTGAGAAGACACTCTACCTTGTTCATGGGTATGCCAGTGGTggtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from Spaln_aa2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACTCTACCTTGTTCATGGGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from Spaln_nt2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACTCTACCTTGTTCATGGGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from Pairagon TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTG-TCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACTCTACCTTGTTCATGG-GTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from Exonerate_protein2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACTCTACCTTGTTCATGGGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from Exonerate_coding2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACTCTACCTTGTTCATGGGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from GeneWise TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACTCTACCTTGTTCATGGGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg #### Mrpl11_ID767_2 --> 0 - 0 Original Alignment CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCT-ACAAAAATTTTTATAAAG agaatgatttcagctctcatacttaaccgcggattttggttgactttcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAATGAGAAGACAAAGGACATTAAAGAAGGCATTCCTCTGGCTCACAA-AATTTTCATAGAGgtagacagacccattctcccatatacttcattggccctagaactagtcat Alignment from CESAR CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG agaatgatttcagctctcatacttaaccgcggattttggttgactttcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAATGAGAAGACAAAGGACATTAAAGAAGGCATTCCTCTGGCTCACAAAATTTTCATAGAGgtagacagacccattctcccatatacttcattggccctagaactagtcat Alignment from Spaln_aa2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG agaatgatttcagctctcatacttaaccgcggattttggttgactttcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAATGAGAAGACAAAGGACATTAAAGAAGGCATTCCTCTGGCTCACAAAATTTTCATAGAGgtagacagacccattctcccatatacttcattggccctagaactagtcat Alignment from Spaln_nt2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG agaatgatttcagctctcatacttaaccgcggattttggttgactttcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAATGAGAAGACAAAGGACATTAAAGAAGGCATTCCTCTGGCTCACAAAATTTTCATAGAGgtagacagacccattctcccatatacttcattggccctagaactagtcat Alignment from Pairagon CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG agaatgatttcagctctcatacttaaccgcggattttggttgactttcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAATGAGAAGACAAAGGACATTAAAGAAGGCATTCCTCTGGCTCACAAAATTTTCATAGAGgtagacagacccattctcccatatacttcattggccctagaactagtcat Alignment from Exonerate_protein2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG agaatgatttcagctctcatacttaaccgcggattttggttgactttcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAATGAGAAGACAAAGGACATTAAAGAAGGCATTCCTCTGGCTCACAAAATTTTCATAGAGgtagacagacccattctcccatatacttcattggccctagaactagtcat Alignment from Exonerate_coding2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG agaatgatttcagctctcatacttaaccgcggattttggttgactttcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAATGAGAAGACAAAGGACATTAAAGAAGGCATTCCTCTGGCTCACAAAATTTTCATAGAGgtagacagacccattctcccatatacttcattggccctagaactagtcat Alignment from GeneWise CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG agaatgatttcagctctcatacttaaccgcggattttggttgactttcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAATGAGAAGACAAAGGACATTAAAGAAGGCATTCCTCTGGCTCACAAAATTTTCATAGAGgtagacagacccattctcccatatacttcattggccctagaactagtcat #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACT-GTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCAAGATTGGGCAGCCTACTCGTTTCTTACT-GCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAggtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCAAGATTGGGCAGCCTACTCGTTTCTTACTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAggtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCAAGATTGGGCAGCCTACTCGTTTCTTACTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCAAGATTGGGCAGCCTACTCGTTTCTTACTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACT-GTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCAAGATTGGGCAGCCTACTCGTTTCTTAC-TGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCAAGATTGGGCAGCCTACTCGTTTCTTACTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCAAGATTGGGCAGCCTACTCGTTTCTTACTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACTCAAGATTGGGCAGCCTACTCGTTTCTTACTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAG-GTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc catgggctatgaggctgggtctctctacacaacaacttcatctcttataggGAGTTGGTGGAACGTGAGCGTGACTG-CTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACcgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc catgggctatgaggctgggtctctctacacaacaacttcatctcttataggGAGTTGGTGGAACGTGAGCGTGACTGCTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACcgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGCGTGACTGCTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGCGTGACTGCTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Pairagon GGAGTTCGTGGAACGCGAG-GTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGCGTGACTG-CTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGCGTGACTGCTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGCGTGACTGCTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGCGTGACTGCTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca #### Mta2_ID2532_5 --> 1 - 0 Original Alignment gGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATC-TTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatcccggatttttgtgtcctgtttaaacttcaggGTAAAGTGCAGTGTGACTCTCTTGAATGAGACAGACATCCTTAAACC-ATATCTAGACAAGGAAgtaagaacccattggcataagagggggggaggcccctggaggtaagtgag Alignment from CESAR gGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatcccggatttttgtgtcctgtttaaacttcaggGTAAAGTGCAGTGTGACTCTCTTGAATGAGACAGACATCCTTAAACCATATCTAGACAAGGAAgtaagaacccattggcataagagggggggaggcccctggaggtaagtgag Alignment from Spaln_aa2Genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatcccggatttttgtgtcctgtttaaacttcagGGTAAAGTGCAGTGTGACTCTCTTGAATGAGACAGACATCCTTAAACCATATCTAGACAAGGAAgtaagaacccattggcataagagggggggaggcccctggaggtaagtgag Alignment from Spaln_nt2Genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATC-TTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatcccggatttttgtgtcctgtttaaacttcagGGTAAAGTGCAGTGTGACTCTCTTGAATGAGACAGACATCCTTAAACCA-TATCTAGACAAGGAAgtaagaacccattggcataagagggggggaggcccctggaggtaagtgag Alignment from Pairagon GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatcccggatttttgtgtcctgtttaaacttcagGGTAAAGTGCAGTGTGACTCTCTTGAATGAGACAGACATCCTTAAACCATATCTAGACAAGGAAgtaagaacccattggcataagagggggggaggcccctggaggtaagtgag Alignment from Exonerate_protein2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatcccggatttttgtgtcctgtttaaacttcagGGTAAAGTGCAGTGTGACTCTCTTGAATGAGACAGACATCCTTAAACCATATCTAGACAAGGAAgtaagaacccattggcataagagggggggaggcccctggaggtaagtgag Alignment from Exonerate_coding2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatcccggatttttgtgtcctgtttaaacttcagGGTAAAGTGCAGTGTGACTCTCTTGAATGAGACAGACATCCTTAAACCATATCTAGACAAGGAAgtaagaacccattggcataagagggggggaggcccctggaggtaagtgag Alignment from GeneWise GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatcccggatttttgtgtcctgtttaaacttcagGGTAAAGTGCAGTGTGACTCTCTTGAATGAGACAGACATCCTTAAACCATATCTAGACAAGGAAgtaagaacccattggcataagagggggggaggcccctggaggtaagtgag #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGAC-CGGCAGATTGATCAGTTTCTCGTGGTGGCCcg tctgacttatttccctttctcccacccgttcatcattaccatcttgacaggaGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCCGACAGATTG-CCAATTTCTTGTGGTGGCTcggtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGAT---CAGTTTCTCGTGGTGGCCcg tctgacttatttccctttctcccacccgttcatcattaccatcttgacaggaGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGAC---CCGACAGATTGCCAATTTCTTGTGGTGGCTcggtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCCGACAGATTGCCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGG-CAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCCGACAGATTG-CCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGA-CCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCCGACAGATTG-CCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCCGACAGATTGCCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCCGACAGATTGCCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCCGACAGATTGCCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCA-ATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgactttcaataggaagaaccctcctctgttctcttccctgacaccagtGCTGTGGGAACTTTTGTGAGAGCTCTAGACTGCACCAGCTCACATCTCAA-TCGGCAATCAAGCTTGCACATGAGTGCA------GCGACCCGAGATATTACTCTGgtgagggccaactcacagatagttgagtaggttaagctgagagtggagcg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCA------ATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgactttcaataggaagaaccctcctctgttctcttccctgacaccagtGCTGTGGGAACTTTTGTGAGAGCTCTAGACTGCACCAGCTCACATCTCAATCGGCAATCAAGCTTGCACATGAGTGCA------GCGACCCGAGATATTACTCTGgtgagggccaactcacagatagttgagtaggttaagctgagagtggagcg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgactttcaataggaagaaccctcctctgttctcttccctgacaccagTGCTGTGGGAACTTTTGTGAGAGCTCTAGACTGCACCAGCTCACATCTCAATCGGCAATCAAGCTTGCACATGAGTGCAGCGACCCGAGATATTACTCTGgtgagggccaactcacagatagttgagtaggttaagctgagagtggagcg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCA------ATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgactttcaataggaagaaccctcctctgttctcttccctgacaccagTGCTGTGGGAACTTTTGTGAGAGCTCTAGACTGCACCAGCTCACATCTCAATCGGCAATCAAGCTTGCACATGAGTGCA------GCGACCCGAGATATTACTCTGgtgagggccaactcacagatagttgagtaggttaagctgagagtggagcg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCA------ATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgactttcaataggaagaaccctcctctgttctcttccctgacaccagTGCTGTGGGAACTTTTGTGAGAGCTCTAGACTGCACCAGCTCACATCTCAATCGGCAATCAAGCTTGCACATGAGTGCA------GCGACCCGAGATATTACTCTGgtgagggccaactcacagatagttgagtaggttaagctgagagtggagcg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgactttcaataggaagaaccctcctctgttctcttccctgacaccagTGCTGTGGGAACTTTTGTGAGAGCTCTAGACTGCACCAGCTCACATCTCAATCGGCAATCAAGCTTGCACATGAGTGCAGCGACCCGAGATATTACTCTGgtgagggccaactcacagatagttgagtaggttaagctgagagtggagcg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgactttcaataggaagaaccctcctctgttctcttccctgacaccagTGCTGTGGGAACTTTTGTGAGAGCTCTAGACTGCACCAGCTCACATCTCAATCGGCAATCAAGCTTGCACATGAGTGCAGCGACCCGAGATATTACTCTGgtgagggccaactcacagatagttgagtaggttaagctgagagtggagcg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgactttcaataggaagaaccctcctctgttctcttccctgacaccagTGCTGTGGGAACTTTTGTGAGAGCTCTAGACTGCACCAGCTCACATCTCAATCGGCAATCAAGCTTGCACATGAGTGCAGCG------ACCCGAGATATTACTCTGgtgagggccaactcacagatagttgagtaggttaagctgagagtggagcg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGAC-TTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACCTTGGCCAAGG-TATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACCTTGGCCAAGGTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACCTTGGCCAAGGTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACCTTGGCCAAGGTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGA-CTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACCTTGGCCAAGG-TATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACCTTGGCCAAGGTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACCTTGGCCAAGGTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACCTTGGCCAAGGTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGTCACTTGCACAGCATAG-CCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from CESAR CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGTCACTTGCACAGCATAGCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGTCACTTGCACAGCATAGCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGTCACTTGCACAGCATAGCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from Pairagon CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGTCACTTGCACAGCATAG-CCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGTCACTTGCACAGCATAGCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGTCACTTGCACAGCATAGCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct Alignment from GeneWise CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacacatgccaatttcacactcatgtgcgttctcacctttcagCTACCCTGGAAGTCACTTGCACAGCATAGCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaagcggcaggccaactgaagacctggaccagaggctatctgattccct #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAAC-CAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagtACTAAGCCAAATCCTAACCCAGATCA-CTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACagtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagtACTAAGCCAAATCCTAACCCAGATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACagtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCCAGATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCCAGATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Pairagon TACCAAGCCAAACCCTAA-CCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCCAGATCA-CTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCCAGATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCCAGATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCCAGATCACTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta #### Myof_ID7493_9 --> 0 - 0 Original Alignment GTTTATAATTCCCATTCTTTG-AGGGCAGATTGTCTGATGGGGGAATTTAAG taagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGCAGAGCAGATT-TTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from CESAR GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG taagagtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGCAGAGCAGATTTTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from Spaln_aa2Genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG taagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGCAGAGCAGATTTTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from Spaln_nt2Genome GTTTATAATTCCCATTCTTTG-AGGGCAGATTGTCTGATGGGGGAATTTAAG taagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGCAGAGCAGATT-TTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from Pairagon GTTTATAATTCCCATTCTTTG-AGGGCAGATTGTCTGATGGGGGAATTTAAG taagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGCAGAGCAGATT-TTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from Exonerate_protein2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG taagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGCAGAGCAGATTTTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from Exonerate_coding2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG taagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGCAGAGCAGATTTTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from GeneWise GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAGATTG taagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGCAGAGCAGATTTTTTATGGGAGAATTTAAGGTGAgtgacaccaccattatgttcaatgagataaggatgagagccactta #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCGTT-TCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCaggtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCGTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCaggtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCGTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCGTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCG-TTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCGTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCGTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCGTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGAT-GTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacaggtGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATCGTGGTCT-TGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacaggtGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATCGTGGTCTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATCGTGGTCTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATCGTGGTCTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATCGTGGTCTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATCGTGGTCTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATCGTGGTCTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATCGTGGTCTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAGAGGATCTCT-CGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACCGGATGC-GTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACCGGATGCGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACCGGATGCGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTC-GGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACCGGATGC-GTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAGAGGATCTC-TCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACCGGATGC-GTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACCGGATGCGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACCGGATGCGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACCGGATGCGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAGAAGGTGATGTTAACTGTTTTT-AAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagcACACAGAGAAAGAAGGTGATGTTAACTGTTTTTCAAAC-TAATCATGGCGCCTATCAGTTCTTCCAGGAGACACTTcagcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from CESAR cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagcACACAGAGAAAGAAGGTGATGTTAACTGTTTTTCAAACTAATCATGGCGCCTATCAGTTCTTCCAGGAGACACTTcagcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTCAAACTAATCATGGCGCCTATCAGTTCTTCCAGGAGACACTTCAgcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from Spaln_nt2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTCAAACTAATCATGGCGCCTATCAGTTCTTCCAGGAGACACTTCAgcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from Pairagon CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTCAAACTAATCATGGCGCCTATCAGTTCTTCCAGGAGACACTTCAgcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from Exonerate_protein2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTCAAACTAATCATGGCGCCTATCAGTTCTTCCAGGAGACACTTCAgcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from Exonerate_coding2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTCAAACTAATCATGGCGCCTATCAGTTCTTCCAGGAGACACTTCAgcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from GeneWise CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCAG----------------- aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTCAAACTAATCATGGCGCCTATCAGTTCTTCCAGGAGACACTTCAGCAGGTAATAAGACCCAGgtttggggcctcaaggtagtgaggagacccag #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTG-GAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagcTATGAAGTACAGCTGCGAAAGCA-GGTACGGCAGAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACaggtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from CESAR cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagcTATGAAGTACAGCTGCGAAAGCAGGTACGGCAGAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACaggtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAGGTACGGCAGAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAGGTACGGCAGAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from Pairagon CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAGGTACGGCAGAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAGGTACGGCAGAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAGGTACGGCAGAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctctattgggtctaagcactcccgtgcgtctgtcttcctacagCTATGAAGTACAGCTGCGAAAGCAGGTACGGCAGAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtgcgcagcatttacactaccaggggaatggacttgctgggggaggtggg #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTG-CTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgactactaatagattttatttctctctctttttcctttagaGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCCTCTCTT-CCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtatgttcaagtccaggaatgtcagggggggaaggtttgacccatccgtg Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgactactaatagattttatttctctctctttttcctttagaGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCCTCTCTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtatgttcaagtccaggaatgtcagggggggaagggaattgttcttttct Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCCTCTCTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtttgacccatccgtg Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCCTCTCTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtttgacccatccgtg Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCCTCTCTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtttgacccatccgtg Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCCTCTCTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtttgacccatccgtg Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCCTCTCTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtttgacccatccgtg Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCCTCTCTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGGTATGTTCAAGTCCAGGAATGTCAGGGGGGGAAGGTTTGACCCATCCGTG #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTAC-AAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagtAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGAGTACCAAACTAGGAC-TGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGaggtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagtAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGAGTACCAAACTAGGACTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGaggtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGAGTACCAAACTAGGACTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTAC-AAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGAGTACCAAACTAGGA-CTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTA-CAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGAGTACCAAACTAGGA-CTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGAGTACCAAACTAGGACTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Exonerate_coding2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGAGTACCAAACTAGGACTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCTGTGAGTACCAAACTAGGACTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt #### Naaladl1_ID1451_10 --> 0 - 1 Original Alignment GAGTTTCTCAGCAAGCTGCAGGAG-CGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCAAACTGCAAGAGCCGCACAGTGG-CTATATCAATGTGGACATCTCTGTTTTTtgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from CESAR GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCAAACTGCAAGAGCCGCACAGTGGCTATATCAATGTGGACATCTCTGTTTTTtgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Spaln_aa2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCAAACTGCAAGAGCCGCACAGTGGCTATATCAATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Spaln_nt2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCAAACTGCAAGAGCCGCACAGTGGCTATATCAATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Pairagon GAGTTTCTCAGCAAGCTGCAGGAG-CGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCAAACTGCAAGAGCCGCACAGTGG-CTATATCAATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Exonerate_protein2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCAAACTGCAAGAGCCGCACAGTGGCTATATCAATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from Exonerate_coding2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCAAACTGCAAGAGCCGCACAGTGGCTATATCAATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag Alignment from GeneWise GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT gctggtggattgatgtcacttgtcctaccgttcactttccctgcttgcagGAGTTTCTCAGCAAACTGCAAGAGCCGCACAGTGGCTATATCAATGTGGACATCTCTGTTTTTTgtgagttagggttggccagctgggctcaggctgggaaggggacgggttag #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATC-TTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagccAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCCTTCT-TTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagccAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCCTTCTTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCCTTCTTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCCTTCTTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Pairagon CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCCTTCTTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCCTTCTTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCCTTCTTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCCTTCTTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAG-ACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccaggtTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGCACCTTAC-AGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGggtgagccaaggaactctgcatccacaggcagggcctttgctctgtgtttc Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccaggtTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGCACCTTACAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGggtgagccaaggaactctgcatccacaggcagggcctttattatgtgacac Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGCACCTTACAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggcctttgctctgtgtttc Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGCACCTTACAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggcctttgctctgtgtttc Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAG-ACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGCACCTTACAG-GTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggcctttgctctgtgtttc Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGCACCTTACAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggcctttgctctgtgtttc Alignment from Exonerate_coding2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGCACCTTACAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggcctttgctctgtgtttc Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGC------------------------------------------------------ gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGCACCTTACAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGGTGAGCCAAGGAACTCTGCATCCACAGGCAGGGCCTTTGCTCTGTGTTTC #### Ndufs8_ID194_2 --> 2 - 1 Original Alignment gaCATCTTAATGGACAAAGCCTT-CATAGCAGCGCAGTGGCGGCAACGTACa ctgggggttgaggaacagggcttcctggcaaaataaatatattattttaggaCATCTTAATGGACAAAGCCTGCCACAGCA-TGCAGTGGCATCAACGTACagtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from CESAR gaCATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACa ctgggggttgaggaacagggcttcctggcaaaataaatatattattttaggaCATCTTAATGGACAAAGCCTGCCACAGCATGCAGTGGCATCAACGTACagtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from Spaln_aa2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCCACAGCATGCAGTGGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from Spaln_nt2Genome GACATCTTAATGGACAAAGCCTTC-ATAGCAGCGCAGTGGCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCCACAGCA-TGCAGTGGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from Pairagon GACATCTTAATGGACAAAGCCTTCATAGCAGC--------GCAGTGGCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCT--------GCCACAGCATGCAGTGGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from Exonerate_protein2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCCACAGCATGCAGTGGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from Exonerate_coding2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCCACAGCATGCAGTGGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from GeneWise GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCCACAGCATGCAGTGGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGA-TTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttaggtGTTGACTGGATGAACACGGTGGTAGCCCGACTTTGTGAAAG-CGATGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttaggtGTTGACTGGATGAACACGGTGGTAGCCCGACTTTGTGAAAGCGATGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGACTTTGTGAAAGCGATGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGACTTTGTGAAAGCGATGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGA-TTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGACTTTGTGAA-AGCGATGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGACTTTGTGAAAGCGATGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGACTTTGTGAAAGCGATGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGACTTTGTGAAAGCGATGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCT-GTAGGACCCAAGGACATGACTGCTca gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTCGTAGGAC-CAAGGACATGACTGCTcagtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTCGTAGGACCAAGGACATGACTGCTcagtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTCGTAGGACCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCT-GTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTCGTAGGA-CCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCT-GTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTCGTAGGA-CCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTCGTAGGACCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTCGTAGGACCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTCGTAGGACCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTT-GGGGACTTCTCTCCCACAGACGTTCATAAACAG agcagggctgcgccccctccgtatggctcataccttgttcttcccaccagacGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACT-TTCTCCCACAGATGTTCATAAACAGgtgagtagcagcctgagcctgtctggatacagaactatggacatacattg Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agcagggctgcgccccctccgtatggctcataccttgttcttcccaccagacGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTCTCCCACAGATGTTCATAAACAGgtgagtagcagcctgagcctgtctggatacagaactatggacatacattg Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agcagggctgcgccccctccgtatggctcataccttgttcttcccaccagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTCTCCCACAGATGTTCATAAACAGgtgagtagcagcctgagcctgtctggatacagaactatggacatacattg Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTT-GGGGACTTCTCTCCCACAGACGTTCATAAACAG agcagggctgcgccccctccgtatggctcataccttgttcttcccaccagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTT-TCTCCCACAGATGTTCATAAACAGgtgagtagcagcctgagcctgtctggatacagaactatggacatacattg Alignment from Pairagon ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agcagggctgcgccccctccgtatggctcataccttgttcttcccaccagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTCTCCCACAGATGTTCATAAACAGgtgagtagcagcctgagcctgtctggatacagaactatggacatacattg Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agcagggctgcgccccctccgtatggctcataccttgttcttcccaccagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTCTCCCACAGATGTTCATAAACAGgtgagtagcagcctgagcctgtctggatacagaactatggacatacattg Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agcagggctgcgccccctccgtatggctcataccttgttcttcccaccagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTCTCCCACAGATGTTCATAAACAGgtgagtagcagcctgagcctgtctggatacagaactatggacatacattg Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agcagggctgcgccccctccgtatggctcataccttgttcttcccaccagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTCTCCCACAGATGTTCATAAACAGgtgagtagcagcctgagcctgtctggatacagaactatggacatacattg #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCC-GCTGGGGGTTATGGAGGCGCTGGAGGAg gggggcttgtctgtattaggttctgacaatggcctctcctttgcttgcagacAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGCGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTCGCTG-GGGTTATGGAGATGCTGGAGGAggtgatggggtacaaatgacaggggaaaggatggaggatggaggctatatg Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gggggcttgtctgtattaggttctgacaatggcctctcctttgcttgcagacAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGCGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTCGCTGGGGTTATGGAGATGCTGGAGGAggtgatggggtacaaatgacaggggaaaggatggaggatggaggctatatg Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggggcttgtctgtattaggttctgacaatggcctctcctttgcttgcagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGCGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTCGCTGGGGTTATGGAGATGCTGGAGGAGgtgatggggtacaaatgacaggggaaaggatggaggatggaggctatatg Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggggcttgtctgtattaggttctgacaatggcctctcctttgcttgcagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGCGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTCGCTGGGGTTATGGAGATGCTGGAGGAGgtgatggggtacaaatgacaggggaaaggatggaggatggaggctatatg Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggggcttgtctgtattaggttctgacaatggcctctcctttgcttgcagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGCGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTCGCTGGGGTTATGGAGATGCTGGAGGAGgtgatggggtacaaatgacaggggaaaggatggaggatggaggctatatg Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggggcttgtctgtattaggttctgacaatggcctctcctttgcttgcagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGCGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTCGCTGGGGTTATGGAGATGCTGGAGGAGgtgatggggtacaaatgacaggggaaaggatggaggatggaggctatatg Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggggcttgtctgtattaggttctgacaatggcctctcctttgcttgcagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGCGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTCGCTGGGGTTATGGAGATGCTGGAGGAGgtgatggggtacaaatgacaggggaaaggatggaggatggaggctatatg Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggggcttgtctgtattaggttctgacaatggcctctcctttgcttgcagACAAGGAGGAAGTGCAGAGGAAGAGGAGGAAGGCCTTGCCCACCTTCTCCCAGCCCTTTGGGGGCGGAACCCACATGGGTGGAGGTTCTGGGGGGTCTCGCTGGGGTTATGGAGATGCTGGAGGAGgtgatggggtacaaatgacaggggaaaggatggaggatggaggctatatg #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTG-GCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTCGCCGTAATCA-TGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGggtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTCGCCGTAATCATGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGggtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTCGCCGTAATCATGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGgctcatacctgtgaaaatgtattgccatcttggacctcccacgagCTCAGAGCAGGT---GCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from Spaln_nt2Genome ACGCCTCTGCACCTG-GCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCT--CCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTCGCCGTAATCA-TGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTgtgaaaatgtattgccatcttggacctcccacgagctcagAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from Pairagon ACGCCTCTGCA-CCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTCGCCGTAATCA-TGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTCGCCGTAATCATGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACctgtgaaaatgtattgccatcttggacctcccacgagctcagAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTCGCCGTAATCATGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACctgtgaaaatgtattgccatcttggacctcccacgagctcagAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtctaaagctggccgtcacgtttctgtctattgtagACACCTCTACATCTTCGCCGTAATCATGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCATACCTGTGAAAATGTATTGCCATCTTGGACCTCCCACGAGCTCAGAGCAGGTGCAGCTGCCCCTGAGTTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGAATTTGAGGgtaatgtgccaattactcctgtaccaagaacaaggatagaaacccaggaa #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCT-GGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCATCTGGCAGCCCGGACTCG-ATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTggtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCATCTGGCAGCCCGGACTCGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTggtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCATCTGGCAGCCCGGACTCGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCATCTGGCAGCCCGGACTCGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAG-CTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCATCTGGCAGCCCGGACTC-GATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCATCTGGCAGCCCGGACTCGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCATCTGGCAGCCCGGACTCGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gcttggttggctgtggccagactttgcttatttctaatttcaattcctagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCATCTGGCAGCCCGGACTCGATCCCCAACACTTTCTCGCCTCCTTCTAAAGGCTGgtaggtcttgccattagtgtatgaagggccagggggggaagtgggacagg #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAAT-GAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtataggtGCCGATATCCATACAGAGAATCGAGG-ACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtataggtGCCGATATCCATACAGAGAATCGAGGACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATCGAGGACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATCGAGGACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATCGAGGACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATCGAGGACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATCGAGGACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATCGAGGACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCA-CCCCTGGCCCCACCCAGCCCTGCAg cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGG-CCCACCCACCCCCGTAggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from CESAR GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCACCCACCCCCGTAggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Pairagon GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAG-CAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagggCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACCAACTGTTAG-TGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaaaagcctctttttgggtttacagCT Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagggCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACCAACTGTTAGTGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatcccatgaccatctgatttcagCT Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACCAACTGTTAGTGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaaaagcctctttttgggtttacagCT Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACCAACTGTTAGTGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaaaagcctctttttgggtttacagCT Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTG-GAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACCAACTGTTAG-TGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaaaagcctctttttgggtttacagCT Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACCAACTGTTAGTGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaaaagcctctttttgggtttacagCT Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACCAACTGTTAGTGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaaaagcctctttttgggtttacagCT Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG------------------------------------------------CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACCAACTGTTAGTGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGGTAAGACAGCTGGACCCTATGCTGAAAAGCCTCTTTTTGGGTTTACAGCT #### Nfkb2_ID9843_21 --> 0 - 1 Original Alignment AG CTGGCTGGTGGGGACTTG-GTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg AGgtatggcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGCGTGG-TCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAggtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from CESAR AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg AGgtaagacagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGCGTGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAggtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from Spaln_aa2Genome AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtatggcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGCGTGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from Spaln_nt2Genome AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtatggcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGCGTGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from Pairagon AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtatggcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGCGTGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from Exonerate_protein2genome AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtatggcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGCGTGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from Exonerate_coding2genome AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtatggcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGCGTGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from GeneWise AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtatggcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGCGTGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa #### Nmrk1_ID4439_5 --> 1 - 2 Original Alignment gCCTCTGGACACC-ATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag gaggatggagaagaaccttgtcttgtgaacgtgtgtgtggtttacactaggCCTCTGGATACCCATATGGA-TAGAAGTTACTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGaggtcaaactggagattgtctgtgaattgtaattccaaagattagatgcaga Alignment from CESAR gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag gaggatggagaagaaccttgtcttgtgaacgtgtgtgtggtttacactaggCCTCTGGATACCCATATGGATAGAAGTTACTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGaggtcaaactggagattgtctgtgaattgtaattccaaagattagatgcaga Alignment from Spaln_aa2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gaggatggagaagaaccttgtcttgtgaacgtgtgtgtggtttacactagGCCTCTGGATACCCATATGGATAGAAGTTACTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtcaaactggagattgtctgtgaattgtaattccaaagattagatgcaga Alignment from Spaln_nt2Genome GCCTCTGGACACC-ATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gaggatggagaagaaccttgtcttgtgaacgtgtgtgtggtttacactagGCCTCTGGATACCCATATGG-ATAGAAGTTACTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtcaaactggagattgtctgtgaattgtaattccaaagattagatgcaga Alignment from Pairagon GCCTCTGGACA-CCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gaggatggagaagaaccttgtcttgtgaacgtgtgtgtggtttacactagGCCTCTGGATACCCATATGG-ATAGAAGTTACTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtcaaactggagattgtctgtgaattgtaattccaaagattagatgcaga Alignment from Exonerate_protein2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gaggatggagaagaaccttgtcttgtgaacgtgtgtgtggtttacactagGCCTCTGGATACCCATATGGATAGAAGTTACTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtcaaactggagattgtctgtgaattgtaattccaaagattagatgcaga Alignment from Exonerate_coding2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gaggatggagaagaaccttgtcttgtgaacgtgtgtgtggtttacactagGCCTCTGGATACCCATATGGATAGAAGTTACTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtcaaactggagattgtctgtgaattgtaattccaaagattagatgcaga Alignment from GeneWise GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG gaggatggagaagaaccttgtcttgtgaacgtgtgtgtggtttacactagGCCTCTGGATACCCATATGGATAGAAGTTACTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtcaaactggagattgtctgtgaattgtaattccaaagattagatgcaga #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCC-AAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCCAAGC-TGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCCAAGCTGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCCAAGCTGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCCAAGCTGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCCAAGCTGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCCAAGCTGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCCAAGCTGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCCAAGCTGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCT-GACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATC-AACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCggtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCggtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from Pairagon GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCT-GACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATC-AACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from Exonerate_coding2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTGACCCTACTCGACCATCAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCC-ACCACCAGTCTCCTTTCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTggtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from CESAR CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCACCACCAGTCTCCTTTCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTggtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCACCACCAGTCTCCTTTCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from Spaln_nt2Genome CTCAGTGTGGATGATT-TCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCC-ACCACCAGTCTCCTTTCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from Pairagon CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCC-ACCACCAGTCTCCTTTCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCACCACCAGTCTCCTTTCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCACCACCAGTCTCCTTTCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacagtactcataacctcaattttttatcttagCTGAGCGTGGATGATCCTCCAACTCCACCACCAGTCTCCTTTCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtgaggggggagaaccctgtctcagatcctggtgtggcctgcatcccagg #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCC-TTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagggTGTGAGCTCTCTGATCACACACGCTCCCTTCA-TTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagggTGTGAGCTCTCTGATCACACACGCTCCCTTCATTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCCTTCATTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCCTTCATTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCCTTCATTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCCTTCATTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCCTTCATTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCCTTCATTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc #### Nudt22_ID1971_4 --> 1 - 0 Original Alignment gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTAT-TACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATCTACCTGAGTG-GGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from CESAR gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTAT-TACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATCTACCTGAGTG-GGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from Spaln_aa2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATCTACCTGAGTGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from Spaln_nt2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATCTACCTGAGTGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from Pairagon GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTAT-TACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATCTACCTGAGT-GGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from Exonerate_protein2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATCTACCTGAGTGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from Exonerate_coding2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATCTACCTGAGTGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag Alignment from GeneWise GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatacaatgtggatatctactggggctccaatagaacattctacagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATCTACCTGAGTGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAAACACAGgtatgtgaattgaccttccagctggctgttatcaagttcaggattactag #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAG-GAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagtTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGCGAACTGG-CCTAGAAGTACCCAAGGAGCATGTCTGGGGGGTCCTGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagtTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGCGAACTGGCCTAGAAGTACCCAAGGAGCATGTCTGGGGGGTCCTGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGCGAACTGGCCTAGAAGTACCCAAGGAGCATGTCTGGGGGGTCCTGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGCGAACTGGCCTAGAAGTACCCAAGGAGCATGTCTGGGGGGTCCTGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGCGAACTGGCCTAGAAGTACCCAAGGAGCATGTCTGGGGGGTCCTGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGCGAACTGGCCTAGAAGTACCCAAGGAGCATGTCTGGGGGGTCCTGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGCGAACTGGCCTAGAAGTACCCAAGGAGCATGTCTGGGGGGTCCTGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctaactgaggtccccaatgccatcttcttttggtagTTTCCCGGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGCGAACTGGCCTAGAAGTACCCAAGGAGCATGTCTGGGGGGTCCTGCAGCCAGTGTATGACCGGgtaaggtatttacactctcatagcacgtaaccctagtgtccagataagca #### Nxf1_ID2344_4 --> 0 - 0 Original Alignment ATTCCTTATGGTAGAAAGTAT-GACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACAT-GCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from CESAR ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from Spaln_aa2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from Spaln_nt2Genome ATTCCTTATGGTAGAAAGTAT-GACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACAT-GCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from Pairagon ATTCCTTATGGTAGAAAGTAT-GACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACAT-GCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from Exonerate_protein2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from Exonerate_coding2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac Alignment from GeneWise ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctagctcagttacacgttctcttttctttcctgactacagATACCCTATGGTAAAAAGCATCGACAAAACATGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatctgagagggtgtgtaaggatgtggactac #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAG-GATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGCGATGCAACTA-TGGCTCCACATTAAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAG-GATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGCGATGCAACTATGG-CTCCACATTAAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGCGATGCAACTATGGCTCCACATTAAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAG-GATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGCGATGCAACTA-TGGCTCCACATTAAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAG-GATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGCGATGCAACTA-TGGCTCCACATTAAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGCGATGCAACTATGGCTCCACATTAAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGCGATGCAACTATGGCTCCACATTAAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggatgtggactacaaattgaagctttcttttccctttcaacagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGCGATGCAACTATGGCTCCACATTAAAAGGCGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaaagagacacggttaaaatggactagttgttactactggttattacat #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAAT-GAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacattgtcaccaattgtcttctcgctgtgcttcactttgtttagATATCAATCATCATTAATACATCTGCTCCACCCTACACCGTGCAGAATCGAACTGA-GGCTGAACAAATAGAGCAGCTCAAGgtaaggttgggtccagtcagaaggccctcaaccctcatcattgttagcta Alignment from CESAR ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacattgtcaccaattgtcttctcgctgtgcttcactttgtttagATATCAATCATCATTAATACATCTGCTCCACCCTACACCGTGCAGAATCGAACTGAGGCTGAACAAATAGAGCAGCTCAAGgtaaggttgggtccagtcagaaggccctcaaccctcatcattgttagcta Alignment from Spaln_aa2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacattgtcaccaattgtcttctcgctgtgcttcactttgtttagATATCAATCATCATTAATACATCTGCTCCACCCTACACCGTGCAGAATCGAACTGAGGCTGAACAAATAGAGCAGCTCAAGgtaaggttgggtccagtcagaaggccctcaaccctcatcattgttagcta Alignment from Spaln_nt2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacattgtcaccaattgtcttctcgctgtgcttcactttgtttagATATCAATCATCATTAATACATCTGCTCCACCCTACACCGTGCAGAATCGAACTGAGGCTGAACAAATAGAGCAGCTCAAGgtaaggttgggtccagtcagaaggccctcaaccctcatcattgttagcta Alignment from Pairagon ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAAT-GAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacattgtcaccaattgtcttctcgctgtgcttcactttgtttagATATCAATCATCATTAATACATCTGCTCCACCCTACACCGTGCAGAATCGAACTG-AGGCTGAACAAATAGAGCAGCTCAAGgtaaggttgggtccagtcagaaggccctcaaccctcatcattgttagcta Alignment from Exonerate_protein2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacattgtcaccaattgtcttctcgctgtgcttcactttgtttagATATCAATCATCATTAATACATCTGCTCCACCCTACACCGTGCAGAATCGAACTGAGGCTGAACAAATAGAGCAGCTCAAGgtaaggttgggtccagtcagaaggccctcaaccctcatcattgttagcta Alignment from Exonerate_coding2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacattgtcaccaattgtcttctcgctgtgcttcactttgtttagATATCAATCATCATTAATACATCTGCTCCACCCTACACCGTGCAGAATCGAACTGAGGCTGAACAAATAGAGCAGCTCAAGgtaaggttgggtccagtcagaaggccctcaaccctcatcattgttagcta Alignment from GeneWise ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacattgtcaccaattgtcttctcgctgtgcttcactttgtttagATATCAATCATCATTAATACATCTGCTCCACCCTACACCGTGCAGAATCGAACTGAGGCTGAACAAATAGAGCAGCTCAAGgtaaggttgggtccagtcagaaggccctcaaccctcatcattgttagcta #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTA-AACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagatTTGGTGGCTCAGAACATTGTTGTTGTTCTACAACCGCA-GAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagatTTGGTGGCTCAGAACATTGTTGTTGTTCTACAACCGCAGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTACAACCGCAGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTACAACCGCAGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTA-AACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTACAACCGCAG-AGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTACAACCGCAGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTACAACCGCAGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTACAACCGCAGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt #### Nxf1_ID2352_12 --> 0 - 0 Original Alignment GATGGCCATGAGCTACCCCCT-CCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCCGA-TTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from CESAR GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCCGATTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from Spaln_aa2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCCGATTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from Spaln_nt2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCCGATTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from Pairagon GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCCGATTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from Exonerate_protein2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCCGATTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from Exonerate_coding2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCCGATTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from GeneWise GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCCGATTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTATGAC-TCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcaggTACTATGTCATTTGTGACCTCAGGAG-CCGTCAGGGTCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCaggtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from CESAR gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcaggTACTATGTCATTTGTGACCTCAGGAGCCGTCAGGGTCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCaggtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Spaln_aa2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACCTCAGGAGCCGTCAGGGTCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Spaln_nt2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACCTCAGGAGCCGTCAGGGTCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Pairagon GTACTATGTAATTTATGA-CTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACCTCAGGAG-CCGTCAGGGTCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Exonerate_protein2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACCTCAGGAGCCGTCAGGGTCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Exonerate_coding2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACCTCAGGAGCCGTCAGGGTCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from GeneWise GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACCTCAGGAGCCGTCAGGGTCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACG-TTCATTGCTGTTCCTGCCAGCAATTCAgg tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagtgGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACACTTCA-TGCTGTTCCTGCCAGCAATACTgggtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagtgGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACACTTCATGCTGTTCCTGCCAGCAATACTgggtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACACTTCATGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACACTTCATGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACACTTCATGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Exonerate_protein2genome AAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgCAGTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACACTTCATGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Exonerate_coding2genome AAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgCAGTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACACTTCATGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from GeneWise CACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tatatggagCTGGGTGTCCTGT---------------GTTCCCTCTGCAGTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACACTTCATGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATG-TTGACCTGCAGGCATAAGtt gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagagCCACTAGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGCTTGA-CTGCAGGCATAAGttgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagagCCACTAGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGCTTGACTGCAGGCATAAGttgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGCTTGACTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGCTTGACTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGCTTGACTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGCTTGACTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGCTTGACTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGCTTGACTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTA-TTCAGTCGCTCAGAGCCTCCAGTGTCAg aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTACTTCA-CCGGTCGGAGCCTCTAGTGTCAggtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTACTTCACCGGTCGGAGCCTCTAGTGTCAggtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTACTTCACCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTACTTCACCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTACTTCACCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTACTTCACCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTACTTCACCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTACTTCACCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCC-CAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtcttcctcccttttccttctatttcactcctgctgtccctttttcaggACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCCAAGTGG-CCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtcttcctcccttttccttctatttcactcctgctgtccctttttcaggACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCCAAGTGGCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCCAAGTGGCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCCAAGTGGCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Pairagon GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCCAAGTGGCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCCAAGTGGCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGTGAGTTTTGAACATAtctcattaccttctcagacattgcaacacaggac Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCCAAGTGGCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGTGAGTTTTGAACATAtctcattaccttctcagacattgcaacacaggac Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCCAAGTGGCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGtgagttttgaacatatctcattaccttctcagacattgcaacacaggac #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGC-TGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCCTGGGGAC-CCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCCTGGGGACCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCCTGGGGACCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCCTGGGGACCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCCTGGGGACCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCCTGGGGACCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCCTGGGGACCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from GeneWise GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCCTGGGGACCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCG-GACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg gcacacaatgcctcaccatatacccccagtctactttcctctccctacagaCTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCACGATTGTG-TGGGGGTGGTGGCCTGGCCTCCCTCAGCAACCATCCTCCCTTGGTGCATCCTACACCTGAAAATGCGGCAggtaagcgcaaagtttaagagaaattatgtgtgagacatcacgccagctgc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg gcacacaatgcctcaccatatacccccagtctactttcctctccctacagaCTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCACGATTGTGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAACCATCCTCCCTTGGTGCATCCTACACCTGAAAATGCGGCAggtaagcgcaaagtttaagagaaattatgtgtgagacatcacgccagctgc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG gcacacaatgcctcaccatatacccccagtctactttcctctccctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCACGATTGTGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAACCATCCTCCCTTGGTGCATCCTACACCTGAAAATGCGGCAGgtaagcgcaaagtttaagagaaattatgtgtgagacatcacgccagctgc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG gcacacaatgcctcaccatatacccccagtctactttcctctccctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCACGATTGTGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAACCATCCTCCCTTGGTGCATCCTACACCTGAAAATGCGGCAGgtaagcgcaaagtttaagagaaattatgtgtgagacatcacgccagctgc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCG-GACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG gcacacaatgcctcaccatatacccccagtctactttcctctccctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCACGATTGT-GTGGGGGTGGTGGCCTGGCCTCCCTCAGCAACCATCCTCCCTTGGTGCATCCTACACCTGAAAATGCGGCAGgtaagcgcaaagtttaagagaaattatgtgtgagacatcacgccagctgc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG gcacacaatgcctcaccatatacccccagtctactttcctctccctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCACGATTGTGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAACCATCCTCCCTTGGTGCATCCTACACCTGAAAATGCGGCAGgtaagcgcaaagtttaagagaaattatgtgtgagacatcacgccagctgc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG gcacacaatgcctcaccatatacccccagtctactttcctctccctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCACGATTGTGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAACCATCCTCCCTTGGTGCATCCTACACCTGAAAATGCGGCAGgtaagcgcaaagtttaagagaaattatgtgtgagacatcacgccagctgc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG gcacacaatgcctcaccatatacccccagtctactttcctctccctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTAGATGACTCACGATTGTGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAACCATCCTCCCTTGGTGCATCCTACACCTGAAAATGCGGCAGgtaagcgcaaagtttaagagaaattatgtgtgagacatcacgccagctgc #### Pcnxl3_ID1168_25 --> 1 - 1 Original Alignment cACTAAACGTGTGGACCATTCTAACACTCGCCTA-GTGACACAGCTGGACCGGAACCCAg gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagcACTAAACCTGTGGACCATTCTAACACTCGCCTACGTGACAC-GCTGGACCGGAACCCAggtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from CESAR cACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagcACTAAACCTGTGGACCATTCTAACACTCGCCTACGTGACACGCTGGACCGGAACCCAggtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Spaln_aa2Genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTACGTGACACGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Spaln_nt2Genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTACGTGACACGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Pairagon CACTAAACGTGTGGACCATTCTAACACTCGCCTA-GTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTACGTGACAC-GCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Exonerate_protein2genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTACGTGACACGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Exonerate_coding2genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTACGTGACACGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from GeneWise CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTACGTGACACGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCA-AGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACACAGGCCCC-CAAGTTCTGGGAGAGGGACTACaagtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACACAGGCCCCCAAGTTCTGGGAGAGGGACTACaagtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACACAGGCCCCCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACACAGGCCCCCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACACAGGCCCCCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACACAGGCCCCCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACACAGGCCCCCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACACAGGCCCCCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGT-GCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTCGCCAGCA-TGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTCGCCAGCATGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTCGCCAGCATGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGT-GCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTCGCCAGCA-TGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGT-GCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTCGCCAGCA-TGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTCGCCAGCATGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTCGCCAGCATGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTCGCCAGCATGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATG-TACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg gctttacagaagggcaagcttactagtgtcattcactctggctcttatagtaTTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGCTACCTCC-GGAACAGATAGACATGCATGGTTTTGGAGGCACAggtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg gctttacagaagggcaagcttactagtgtcattcactctggctcttatagtaTTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGCTACCTCCGGAACAGATAGACATGCATGGTTTTGGAGGCACAggtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGCTACCTCCGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGCTACCTCCGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATG-TACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGCTACCTCC-GGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGCTACCTCCGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGCTACCTCCGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGCTACCTCCGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCTGAT-GCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATCGCAG-ATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from CESAR AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATCGCAGATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATCGCAGATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from Spaln_nt2Genome AGCGTGCAGCCTGAT-GCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATCGCAG-ATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from Pairagon AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATCGCAGATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from Exonerate_protein2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATCGCAGATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from Exonerate_coding2genome atggaccctagtattattcactaccaactcttatgcttccccttgaacagagtgtgcaacctgatcgcagatcgcccatgcacgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from GeneWise AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATCGCAGATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAAT-GCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATCGCAGGCA-CAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from CESAR caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATCGCAGGCACAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATCGCAGGCACAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATCGCAGGCACAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Pairagon CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAAT-GCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATCGCAGGCA-CAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATCGCAGGCACAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATCGCAGGCACAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATCGCAGGCACAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCC-CGGATGGAGGATTCTGGGCCCCTCAGAg ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGTTGCTGTCCCCGGATGGAGG-TTCTGGGCCTCTCAGAggtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from CESAR GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAg ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGTTGCTGTCCCCGGATGGAGGTTCTGGGCCTCTCAGAggtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from Spaln_aa2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGTTGCTGTCCCCGGATGGAGGTTCTGGGCCTCTCAGAGgtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from Spaln_nt2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGTTGCTGTCCCCGGATGGAGGTTCTGGGCCTCTCAGAGgtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from Pairagon GAGTTGCTG-CCCCGGATGGAGGATTCTGGGCCCCTCAGAG ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGTTGCTGTCCCCGGATGGAGG-TTCTGGGCCTCTCAGAGgtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from Exonerate_protein2genome ttactctctcacctggttgttgatctgtacatatcttcattcttttataggagttgctgtccccggatggaggttctgggcctctcagaggtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from Exonerate_coding2genome ttactctctcacctggttgttgatctgtacatatcttcattcttttataggagttgctgtccccggatggaggttctgggcctctcagaggtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from GeneWise ttactctctcacctggttgttgatctgtacatatcttcattcttttataggagttgctgtccccggatggaggttctgggcctctcagaggtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATC-TTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCCTTTGCTACCA-CAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCCTTTGCTACCACAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCCTTTGCTACCACAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCCTTTGCTACCACAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCAT-CTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCCTTTGCTACCA-CAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCCTTTGCTACCACAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCCTTTGCTACCACAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCCTTTGCTACCACAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTG-CACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCCACATTC-AGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCCACATTCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCCACATTCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCCACATTCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCCACATTCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCCACATTCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCCACATTCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCCACATTCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGAC-AAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACCAAGGTGG-AGCCCGGGCTATTGCCATAGATGCAggtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACCAAGGTGGAGCCCGGGCTATTGCCATAGATGCAggtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACCAAGGTGGAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACCAAGGTGGAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGA-CAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACCAAGGTGG-AGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACCAAGGTGGAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACCAAGGTGGAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACCAAGGTGGAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg #### Pcx_ID555_5 --> 2 - 0 Original Alignment gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGA-GGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccataggtGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGACGGTGGGG-CCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from CESAR gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccataggtGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGACGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from Spaln_aa2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGACGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from Spaln_nt2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGACGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from Pairagon GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGACGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from Exonerate_protein2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGACGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from Exonerate_coding2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGACGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from GeneWise GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGACGGTGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAAT-GGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACCAGAGCAC-GTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAggtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACCAGAGCACGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAggtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACCAGAGCACGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACCAGAGCACGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAA----------TGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACCAGAGCACGT----------TTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACCAGAGCACGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACCAGAGCACGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACCAGAGCACGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCT-ACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctggactcctgggagcagccgtcacttcttcctatggggtcatccaggaCATGTTATGGTGAATGGCCCTCACCACCC-AATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAggtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctggactcctgggagcagccgtcacttcttcctatggggtcatccaggaCATGTTATGGTGAATGGCCCTCACCACCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAggtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTCACCACCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTCACCACCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from Pairagon GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTCACCACCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTCACCACCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTCACCACCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctgggagcagccgtcacttcttcctatggggtcatccagGACATGTTATGGTGAATGGCCCTCACCACCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtaatgtatggtacatgtttaacaccttaatgggaacatgtgagatggct #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCC-ATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcccctctattttaatttctttaacagGTTGAGCTGGAGCGAGGCAAGACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCCATTTTAG-CAAAGACACCCAGGCCATGAAGgtgtggttgaacctgatccagtcaggtagtagcagtgacttgataggttg Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcccctctattttaatttctttaacagGTTGAGCTGGAGCGAGGCAAGACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCCATTTTAGCAAAGACACCCAGGCCATGAAGgtgtggttgaacctgatccagtcaggtagtagcagtgacttgataggttg Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcccctctattttaatttctttaacagGTTGAGCTGGAGCGAGGCAAGACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCCATTTTAGCAAAGACACCCAGGCCATGAAGgtgtggttgaacctgatccagtcaggtagtagcagtgacttgataggttg Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcccctctattttaatttctttaacagGTTGAGCTGGAGCGAGGCAAGACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCCATTTTAGCAAAGACACCCAGGCCATGAAGgtgtggttgaacctgatccagtcaggtagtagcagtgacttgataggttg Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcccctctattttaatttctttaacagGTTGAGCTGGAGCGAGGCAAGACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCCATTTTAGCAAAGACACCCAGGCCATGAAGgtgtggttgaacctgatccagtcaggtagtagcagtgacttgataggttg Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcccctctattttaatttctttaacagGTTGAGCTGGAGCGAGGCAAGACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCCATTTTAGCAAAGACACCCAGGCCATGAAGgtgtggttgaacctgatccagtcaggtagtagcagtgacttgataggttg Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcccctctattttaatttctttaacagGTTGAGCTGGAGCGAGGCAAGACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCCATTTTAGCAAAGACACCCAGGCCATGAAGgtgtggttgaacctgatccagtcaggtagtagcagtgacttgataggttg Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcccctctattttaatttctttaacagGTTGAGCTGGAGCGAGGCAAGACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCCATTTTAGCAAAGACACCCAGGCCATGAAGgtgtggttgaacctgatccagtcaggtagtagcagtgacttgataggttg #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCAGCT-CCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagaTCAATTATTGCAGCTCCCATTCC-TAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from CESAR aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagaTCAATTATTGCAGCTCCCATTCCTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCCATTCCTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from Spaln_nt2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCCATTCCTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from Pairagon ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCCATTCCTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from Exonerate_protein2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCCATTCCTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from Exonerate_coding2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCCATTCCTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from GeneWise ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCCATTCCTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt #### Pdcd11_ID10119_13 --> 0 - 0 Original Alignment GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGG-ATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCC-CTCCTTCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from CESAR GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCCTCCTTCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from Spaln_aa2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCCTCCTTCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from Spaln_nt2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCCTCCTTCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from Pairagon GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGG-ATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCC-TCCTTCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from Exonerate_protein2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCCTCCTTCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from Exonerate_coding2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCCTCCTTCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from GeneWise GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCCTCCTTCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg #### Pdcd11_ID10129_23 --> 0 - 1 Original Alignment GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTT-GACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg ggcgccacgttcgctaacaaatctgggatttaaattgtttttctctacagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTCGACC-AGAAGTCCCCAGGGCTTTCTTGTGTCTGTCACTCATTggtaagaaatgatttggtgcctggtcagagagagactgtggtgggagtttt Alignment from CESAR GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg ggcgccacgttcgctaacaaatctgggatttaaattgtttttctctacagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTCGACCAGAAGTCCCCAGGGCTTTCTTGTGTCTGTCACTCATTggtaagaaatgatttggtgcctggtcagagagagactgtggtgggagtttt Alignment from Spaln_aa2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggcgccacgttcgctaacaaatctgggatttaaattgtttttctctacagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTCGACCAGAAGTCCCCAGGGCTTTCTTGTGTCTGTCACTCATTGgtaagaaatgatttggtgcctggtcagagagagactgtggtgggagtttt Alignment from Spaln_nt2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggcgccacgttcgctaacaaatctgggatttaaattgtttttctctacagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTCGACCAGAAGTCCCCAGGGCTTTCTTGTGTCTGTCACTCATTGgtaagaaatgatttggtgcctggtcagagagagactgtggtgggagtttt Alignment from Pairagon GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggcgccacgttcgctaacaaatctgggatttaaattgtttttctctacagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTCGACCAGAAGTCCCCAGGGCTTTCTTGTGTCTGTCACTCATTGgtaagaaatgatttggtgcctggtcagagagagactgtggtgggagtttt Alignment from Exonerate_protein2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggcgccacgttcgctaacaaatctgggatttaaattgtttttctctacagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTCGACCAGAAGTCCCCAGGGCTTTCTTGTGTCTGTCACTCATTGgtaagaaatgatttggtgcctggtcagagagagactgtggtgggagtttt Alignment from Exonerate_coding2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggcgccacgttcgctaacaaatctgggatttaaattgtttttctctacagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTCGACCAGAAGTCCCCAGGGCTTTCTTGTGTCTGTCACTCATTGgtaagaaatgatttggtgcctggtcagagagagactgtggtgggagtttt Alignment from GeneWise GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggcgccacgttcgctaacaaatctgggatttaaattgtttttctctacagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTTGGGCAGGCCATTGAGGCCACTGTTGTTCGACCAGAAGTCCCCAGGGCTTTCTTGTGTCTGTCACTCATTGgtaagaaatgatttggtgcctggtcagagagagactgtggtgggagtttt #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAA-GAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagcGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAACGAGCCAC-GAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagcGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAACGAGCCACGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAACGAGCCACGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAACGAGCCACGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAACGAGCCACGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAACGAGCCACGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAACGAGCCACGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAACGAGCCACGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTG-GGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGCGGGGAGCCAA-GCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGCGGGGAGCCAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGCGGGGAGCCAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGCGGGGAGCCAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGCGGGGAGCCAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGCGGGGAGCCAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Exonerate_coding2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGCGGGGAGCCAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGCGGGGAGCCAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGC-TCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCCTCAG-CAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCCTCAGCAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCCTCAGCAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCCTCAGCAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCCTCAGCAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCCTCAGCAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCCTCAGCAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCCTCAGCAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca #### Pdcd11_ID10137_31 --> 0 - 2 Original Alignment AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGC-TCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcgtttcactcaaaggagatggaactccttagcccactctcgtccacagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCCGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCCTCCATCC-TTGGCTGCAGTACATGGCGTTCCACCTGCAAGCTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTCTGAAGACCATCTCATTCcggtaccgactctgactttcctgcagtcctggatgagtaatttgttataagt Alignment from CESAR AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcgtttcactcaaaggagatggaactccttagcccactctcgtccacagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCCGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCCTCCATCCTTGGCTGCAGTACATGGCGTTCCACCTGCAAGCTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTCTGAAGACCATCTCATTCcggtaccgactctgactttcctgcagtcctggatgagtaatttgttataagt Alignment from Spaln_aa2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcgtttcactcaaaggagatggaactccttagcccactctcgtccacagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCCGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCCTCCATCCTTGGCTGCAGTACATGGCGTTCCACCTGCAAGCTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTCTGAAGACCATCTCATTCCGgtaccgactctgactttcctgcagtcctggatgagtaatttgttataagt Alignment from Spaln_nt2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcgtttcactcaaaggagatggaactccttagcccactctcgtccacagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCCGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCCTCCATCCTTGGCTGCAGTACATGGCGTTCCACCTGCAAGCTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTCTGAAGACCATCTCATTCCGgtaccgactctgactttcctgcagtcctggatgagtaatttgttataagt Alignment from Pairagon AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAG-CTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcgtttcactcaaaggagatggaactccttagcccactctcgtccacagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCCGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCCTCCATCC-TTGGCTGCAGTACATGGCGTTCCACCTGCAAGCTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTCTGAAGACCATCTCATTCCGgtaccgactctgactttcctgcagtcctggatgagtaatttgttataagt Alignment from Exonerate_protein2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcgtttcactcaaaggagatggaactccttagcccactctcgtccacagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCCGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCCTCCATCCTTGGCTGCAGTACATGGCGTTCCACCTGCAAGCTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTCTGAAGACCATCTCATTCCGgtaccgactctgactttcctgcagtcctggatgagtaatttgttataagt Alignment from Exonerate_coding2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcgtttcactcaaaggagatggaactccttagcccactctcgtccacagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCCGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCCTCCATCCTTGGCTGCAGTACATGGCGTTCCACCTGCAAGCTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTCTGAAGACCATCTCATTCCGgtaccgactctgactttcctgcagtcctggatgagtaatttgttataagt Alignment from GeneWise AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcgtttcactcaaaggagatggaactccttagcccactctcgtccacagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCCGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCCTCCATCCTTGGCTGCAGTACATGGCGTTCCACCTGCAAGCTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTCTGAAGACCATCTCATTCCGgtaccgactctgactttcctgcagtcctggatgagtaatttgttataagt #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCT-GTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTCGTCTGTA-CAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAAcgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTCGTCTGTACAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAAcgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTCGTCTGTACAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGC------CAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTCGTCTGTACAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCT-GTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGC------CAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTCGTCTGTA-CAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTCGTCTGTACAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTCGTCTGTACAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTCGTCTGTACAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGG-GACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagatGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGCGACGTGG-GCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagatGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGCGACGTGGGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGCGACGTGGGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGCGACGTGGGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGG-GACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGCGACGTGG-GCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGCGACGTGGGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGCGACGTGGGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGCGACGTGGGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGCATGATCTTAG-TTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGCATGATCTTAGTTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGCATGATCTTAGTTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGCATGATCTTAGTTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGCATGATCTTAG-TTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGCATGATCTTAGTTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGCATGATCTTAGTTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGCATGATCTTAGTTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGATTACATTTTACAT-GGAAAAGAAGAGATCAACGTGATTcc ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATCGGCAAAGAAG-AATCAATGTGATTccgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATCGGCAAAGAAGAATCAATGTGATTccgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATCGGCAAAGAAGAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATCGGCAAAGAAGAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTACATTTTACAT-GGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATCGGCAAAGAAGA-ATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATCGGCAAAGAAGAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATCGGCAAAGAAGAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATCGGCAAAGAAGAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAG-ACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATCACTATGT-CCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATCACTATGTCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATCACTATGTCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAG-ACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATCACTATG-TCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCA--------CTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCA--------TCACTATGTCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATCACTATGTCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATCACTATGTCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATCACTATGTCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc #### Pde6c_ID7550_20 --> 0 - 0 Original Alignment CCTATGATGGACAGAAGCAAAAAGGAT-GAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATCGAAC-CCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from CESAR CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATCGAACCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Spaln_aa2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATCGAACCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Spaln_nt2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATCGAACCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Pairagon CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATCGAACCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Exonerate_protein2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATCGAACCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Exonerate_coding2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATCGAACCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from GeneWise CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATCGAACCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta #### Peo1_ID9266_3 --> 1 - 2 Original Alignment gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTG-CAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCCAGTTCA-GATGGGTCACGAGCAGCTCTCCTCTGACaggtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from CESAR gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCCAGTTCAGATGGGTCACGAGCAGCTCTCCTCTGACaggtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from Spaln_aa2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCCAGTTCAGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from Spaln_nt2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCCAGTTCAGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from Pairagon GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTG-CAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCCAGTTCA-GATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from Exonerate_protein2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCCAGTTCAGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from Exonerate_coding2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCCAGTTCAGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from GeneWise GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCCAGTTCAGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTT-GTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg gacttgagacctgaaaggaagatgtgtaccttccttgtcgtgtcttccaggTACACCTGCCCCTTTCGTAGAGA-GTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTggtatggccttctggggtcactatgtttcagcactaagcgaacccagactg Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg gacttgagacctgaaaggaagatgtgtaccttccttgtcgtgtcttccaggTACACCTGCCCCTTTCGTAGAGAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTggtatggccttctggggtcactatgtttcagcactaagcgaacccagactg Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacctgaaaggaagatgtgtaccttccttgtcgtgtcttccagGTACACCTGCCCCTTTCGTAGAGAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtatggccttctggggtcactatgtttcagcactaagcgaacccagactg Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacctgaaaggaagatgtgtaccttccttgtcgtgtcttccagGTACACCTGCCCCTTTCGTAGAGAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtatggccttctggggtcactatgtttcagcactaagcgaacccagactg Alignment from Pairagon GTACACCTGCCCCTTT-GTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacctgaaaggaagatgtgtaccttccttgtcgtgtcttccagGTACACCTGCCCCTTTCGTAGAG-AGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtatggccttctggggtcactatgtttcagcactaagcgaacccagactg Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacctgaaaggaagatgtgtaccttccttgtcgtgtcttccagGTACACCTGCCCCTTTCGTAGAGAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtatggccttctggggtcactatgtttcagcactaagcgaacccagactg Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacctgaaaggaagatgtgtaccttccttgtcgtgtcttccagGTACACCTGCCCCTTTCGTAGAGAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtatggccttctggggtcactatgtttcagcactaagcgaacccagactg Alignment from GeneWise GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacctgaaaggaagatgtgtaccttccttgtcgtgtcttccagGTACACCTGCCCCTTTCGTAGAGAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtatggccttctggggtcactatgtttcagcactaagcgaacccagactg #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGT-GGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaagccaccctgtttcagtgttcctgttcctcacagGTGGTCTTGATTGGAGATGGGGTTGGTCGGCATCCTTG-CTTTGATGCACTCTGCCACAGTGCAAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtgagtgtgtccaaactaacttccacaggggggcatgattacaaatatac Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaagccaccctgtttcagtgttcctgttcctcacagGTGGTCTTGATTGGAGATGGGGTTGGTCGGCATCCTTGCTTTGATGCACTCTGCCACAGTGCAAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtgagtgtgtccaaactaacttccacaggggggcatgattacaaatatac Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaagccaccctgtttcagtgttcctgttcctcacagGTGGTCTTGATTGGAGATGGGGTTGGTCGGCATCCTTGCTTTGATGCACTCTGCCACAGTGCAAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtgagtgtgtccaaactaacttccacaggggggcatgattacaaatatac Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGT-GGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaagccaccctgtttcagtgttcctgttcctcacagGTGGTCTTGATTGGAGATGGGGTTGGTCGGCATCCT-TGCTTTGATGCACTCTGCCACAGTGCAAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtgagtgtgtccaaactaacttccacaggggggcatgattacaaatatac Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGT-GGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaagccaccctgtttcagtgttcctgttcctcacagGTGGTCTTGATTGGAGATGGGGTTGGTCGGCATCCT-TGCTTTGATGCACTCTGCCACAGTGCAAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtgagtgtgtccaaactaacttccacaggggggcatgattacaaatatac Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaagccaccctgtttcagtgttcctgttcctcacagGTGGTCTTGATTGGAGATGGGGTTGGTCGGCATCCTTGCTTTGATGCACTCTGCCACAGTGCAAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtgagtgtgtccaaactaacttccacaggggggcatgattacaaatatac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tcaatacaggtaaaaaagccaccctgtttcagtgttcctgttcctcacagGTGGTCTTGATTGGAGATGGGGTTGGTCGGCATCCTTGCTTTGATGCACTCTGCCACAGTGCAAGTGCAGGCCCAGGGAGCCGGGGCAGCAGCCGCCGTGGGAGCATGgtgagtgtgtccaaactaacttccacaggggggcatgattacaaatatac #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCT-AGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACag agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTCAGTCCAG-ACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATaggtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from CESAR AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACag agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTCAGTCCAGACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATaggtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from Spaln_aa2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTCAGTCCAGACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from Spaln_nt2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTCAGTCCAGACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from Pairagon AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCT-AGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTCAGTCCAG-ACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from Exonerate_protein2genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTCAGTCCAGACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from Exonerate_coding2genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTCAGTCCAGACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa Alignment from GeneWise AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG agaggtctcaggtgtaagggatgctacttttctctcattctttctcctagATGAATGAGATACTCTCACCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTCAGTCCAGACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCCGATCCTGATGGCTCGCAAAATAGgtaagtacttttcacagtagtcctagcccaaaaactaagcttgacctcaa #### Pitpnm1_ID318_15 --> 2 - 1 Original Alignment ctGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTA-GGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagctGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTACGGCAACGAAC-AGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACagtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from CESAR ctGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagctGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTACGGCAACGAACAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACagtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Spaln_aa2Genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTACGGCAACGAACAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Spaln_nt2Genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTG---GTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTACGGCAACGAACAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Pairagon CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTG---GTGCCTTCTGGAAGGGCAGTGAACTA-GGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTACGGCAACGAA-CAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Exonerate_protein2genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTACGGCAACGAACAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTACGGCAACGAACAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACG-GTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACACGTCA-ACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACACGTCAACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACACGTCAACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACACGTCAACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACG----CTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCA----CACGTCAACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACACGTCAACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACACGTCAACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACACGTCAACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt #### Pitpnm1_ID320_17 --> 0 - 0 Original Alignment GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAG-TGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagagccatatacgggtggaggttgttttcctaatgtttttgtttcttagATTATTGAAAAGGAGTGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCTGCCTTCCCTAGGGAGAAACTGGCAGC-CAAGCGCACACAGGTCAAGATCCGGgtgcgtgtctgactgtcatgtaccagctagagtatgtcccctgtatgctc Alignment from CESAR GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagagccatatacgggtggaggttgttttcctaatgtttttgtttcttagATTATTGAAAAGGAGTGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCTGCCTTCCCTAGGGAGAAACTGGCAGCCAAGCGCACACAGGTCAAGATCCGGgtgcgtgtctgactgtcatgtaccagctagagtatgtcccctgtatgctc Alignment from Spaln_aa2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagagccatatacgggtggaggttgttttcctaatgtttttgtttcttagATTATTGAAAAGGAGTGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCTGCCTTCCCTAGGGAGAAACTGGCAGCCAAGCGCACACAGGTCAAGATCCGGgtgcgtgtctgactgtcatgtaccagctagagtatgtcccctgtatgctc Alignment from Spaln_nt2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagagccatatacgggtggaggttgttttcctaatgtttttgtttcttagATTATTGAAAAGGAGTGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCTGCCTTCCCTAGGGAGAAACTGGCAGCCAAGCGCACACAGGTCAAGATCCGGgtgcgtgtctgactgtcatgtaccagctagagtatgtcccctgtatgctc Alignment from Pairagon GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAG-TGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagagccatatacgggtggaggttgttttcctaatgtttttgtttcttagATTATTGAAAAGGAGTGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCTGCCTTCCCTAGGGAGAAACTGGCAGC-CAAGCGCACACAGGTCAAGATCCGGgtgcgtgtctgactgtcatgtaccagctagagtatgtcccctgtatgctc Alignment from Exonerate_protein2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagagccatatacgggtggaggttgttttcctaatgtttttgtttcttagATTATTGAAAAGGAGTGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCTGCCTTCCCTAGGGAGAAACTGGCAGCCAAGCGCACACAGGTCAAGATCCGGgtgcgtgtctgactgtcatgtaccagctagagtatgtcccctgtatgctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG tagagccatatacgggtggaggttgttttcctaatgtttttgtttcttagATTATTGAAAAGGAGTGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCTGCCTTCCCTAGGGAGAAACTGGCAGCCAAGCGCACACAGGTCAAGATCCGGgtgcgtgtctgactgtcatgtaccagctagagtatgtcccctgtatgctc #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGC-CGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCCGTCCCCAGG-GCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGgtttatgtttttaatgttaatacagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCCGTCCCCAGGGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGgtccttagaattttctgttttacagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCCGTCCCCAGGGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGGTTTATGTTTTTAATGTTAATACAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCC-GTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCCGTCCCCAGG-GCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGGTTTATGTTTTTAATGTTAATACAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGG-CCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGA-------------------------AGGTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCCGTCCCCAGG-GCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGGTTTATGTTTTTAATGTTAATACAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTGGATGTCTAC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCCGTCCCCAGGGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGGTTTATGTTTTTaatgttaatacaggttgatgtctatgtcatgacacagc Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTGGATGTCTAC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCCGTCCCCAGGGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGGTTTATGTTTTTaatgttaatacaggttgatgtctatgtcatgacacagc Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTGAGGGCCCGTCCCCAGGGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGgtttatgtttttaatgttaatacagGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTC-TACCCTGTGCGCATGGTGGTCag TGTGGTCACACTCACTGGAGAAGAGgtaattagaattttctgttttacagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCCTACC-TGTGCACATGGTGGTCaggtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTGGTCACACTCACTGGAGAAGAGgtccttagaattttctgttttacagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCCTACCTGTGCACATGGTGGTCaggtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGGTAATTAGAATTTTCTGTTTTACAgGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCCTACCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Spaln_nt2Genome TGTGGTCACGCTCACTGGAGA-----------GAA--------------GGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGGTAATTAGAATTTTCTGTTTTACAGGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCCTACCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGGTAATTAGAATTTTCTGTTTTACAGGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCCTACCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGAGAGAAGGTG TGTGGTCACACTCACTGGAGAAGAGGTAattagaattttctgttttacaggttgatgtctatgtcatgacacagcctctgtcaggcaagtggatccactttggcacagaggtcactaacagctctggccgtctcaccttcccagtgtcgtcagaacatgcactgggcattggtgtcctacctgtgcacatggtggtcaggtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGgtaattagaattttctgttttacagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCCTACCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTG-GTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gcactaccaacctcattctgtccacctattatcgtttctgttccttttaggGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTCGTGTCCC-AGGCACAGAAGCCGTGGTCTTCAGCATTGATGGTTCTTTCACTGCCAGTGTCTCGATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGaggtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gcactaccaacctcattctgtccacctattatcgtttctgttccttttaggGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTCGTGTCCCAGGCACAGAAGCCGTGGTCTTCAGCATTGATGGTTCTTTCACTGCCAGTGTCTCGATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGaggtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTCGTGTCCCAGGCACAGAAGCCGTGGTCTTCAGCATTGATGGTTCTTTCACTGCCAGTGTCTCGATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTCGTGTCCCAGGCACAGAAGCCGTGGTCTTCAGCATTGATGGTTCTTTCACTGCCAGTGTCTCGATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTG-TGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTCGTGTCCC-AGGCACAGAAGCCGTGGTCTTCAGCATTGATGGTTCTTTCACTGCCAGTGTCTCGATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from Exonerate_protein2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTCGTGTCCCAGGCACAGAAGCCGTGGTCTTCAGCATTGATGGTTCTTTCACTGCCAGTGTCTCGATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from Exonerate_coding2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTCGTGTCCCAGGCACAGAAGCCGTGGTCTTCAGCATTGATGGTTCTTTCACTGCCAGTGTCTCGATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gcactaccaacctcattctgtccacctattatcgtttctgttccttttagGGGAGACCACACATATGCTGAGTGCTGCCTAACTGTTCGTGTCCCAGGCACAGAAGCCGTGGTCTTCAGCATTGATGGTTCTTTCACTGCCAGTGTCTCGATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagttccgcagacccacacagcaacttgtcatccctgtggactggagc #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGAT-GTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGTCCCCAAAAGATCGTGGCAG-CTACGCAGCATTGGGACTCTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from CESAR GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGTCCCCAAAAGATCGTGGCAGCTACGCAGCATTGGGACTCTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGTCCCCAAAAGATCGTGGCAGCTACGCAGCATTGGGACTCTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGTCCCCAAAAGATCGTGGCAGCTACGCAGCATTGGGACTCTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGAT-GTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGTCCCCAAAAGATCGTGGCAGC-TACGCAGCATTGGGACTCTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from Exonerate_protein2genome tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacaggtagatctgaacatcatagctggatatgggtccccaaaagatcgtggcagctacgcagcattgggactctctccaagccagacctatattattggccgtggcatccgcacattgcaggcacagtgtcaggtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctaaatggctctgtaccctggctgttctgcttacagGTAGATCTGAACATCATAGCTGGATATGGGTCCCCAAAAGATCGTGGCAGCTACGCAGCATTGGGACTCTCTCCAAGCCAGACCTATATTATTGGCCGTGGCATCCGCACATTGCAGGCACAGTGTCAGgtaagatctaaggaagggcagctaacgaagtccagggtcaagtctaagca #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATCGAACGCCTAG-GGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATCGAACGCCTAGGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATCGAACGCCTAGGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATCGAACGCCTAG-GGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCAT-GAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATCGAACGCCTAG-GGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATCGAACGCCTAGGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATCGAACGCCTAGGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATCGAACGCCTAGGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment gGAACTGACAGAGATTAATCGG-CGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggaggGAACTGACAGAGATTAATCGGCCAACACATCA-TGAGTCAGTAAACTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggaggGAACTGACAGAGATTAATCGGCCAACACATCATGAGTCAGTAAACTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCCAACACATCATGAGTCAGTAAACTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCCAACACATCATGAGTCAGTAAACTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from Pairagon GGAACTGACAGAGATTAATCGG-CGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCCAACACATCA-TGAGTCAGTAAACTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCCAACACATCATGAGTCAGTAAACTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from Exonerate_coding2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCCAACACATCATGAGTCAGTAAACTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCCAACACATCATGAGTCAGTAAACTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAAC-CAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcaggaTACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTT-GTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcaggaTACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from GeneWise GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCCAACCTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAG-CTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttaggTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTT-GAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGggtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttaggTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGggtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCACCCTCTTTTGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTCGAG-ATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagctgggtctgccaggccatggctccctacctattttcccctcagaaAGGAACAAGTGCTTTAGGCATGT-ATCCTTCGTGGAAACCAAAGCAATGGACCAATTGACCAAGAGTCCTATGGAGTTTGTGgagtgagttcaccaataccatggctagtgcggggccaggagtactacctggt Alignment from CESAR aaAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagctgggtctgccaggccatggctccctacctattttcccctcagaaAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAAACCAAAGCAATGGACCAATTGACCAAGAGTCCTATGGAGTTTGTGgagtgagttcaccaataccatggctagtgcggggccaggagtactacctggt Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggctccctacctattttcccctcagAAAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAAACCAAAGCAATGGACCAATTGACCAAGAGTCCTATGGAGTTTGTGGAgtgagttcaccaataccatggctagtgcggggccaggagtactacctggt Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggctccctacctattttcccctcagAAAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAAACCAAAGCAATGGACCAATTGACCAAGAGTCCTATGGAGTTTGTGGAgtgagttcaccaataccatggctagtgcggggccaggagtactacctggt Alignment from Pairagon AAAGGAACAAGTGCTTCGAG-ATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggctccctacctattttcccctcagAAAGGAACAAGTGCTTTAGGCATGT-ATCCTTCGTGGAAACCAAAGCAATGGACCAATTGACCAAGAGTCCTATGGAGTTTGTGGAgtgagttcaccaataccatggctagtgcggggccaggagtactacctggt Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggctccctacctattttcccctcagAAAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAAACCAAAGCAATGGACCAATTGACCAAGAGTCCTATGGAGTTTGTGGAgtgagttcaccaataccatggctagtgcggggccaggagtactacctggt Alignment from Exonerate_coding2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggctccctacctattttcccctcagAAAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAAACCAAAGCAATGGACCAATTGACCAAGAGTCCTATGGAGTTTGTGGAgtgagttcaccaataccatggctagtgcggggccaggagtactacctggt Alignment from GeneWise AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggctccctacctattttcccctcagAAAGGAACAAGTGCTTTAGGCATGTATCCTTCGTGGAAACCAAAGCAATGGACCAATTGACCAAGAGTCCTATGGAGTTTGTGGAgtgagttcaccaataccatggctagtgcggggccaggagtactacctggt #### Plcb3_ID1918_13 --> 0 - 1 Original Alignment CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAG-CGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg tgtccttcgcggctaggaatggccagcacttgactgtatctttctttcagCTATCTGAAGGTATCCCGCTGCCTAGTCCACAGGACCTCATG---GGTATTCTGGTAAAGAATAGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTTCAGTACGCAAGCCAGCCTCTGG-ACTGAGCAACTTGGCACTGAGTGAGAGCTCTGCTGCCTCAGAGCCCTTATCACCTCAGCTCggtaagggtgatgccctgacttctactgctgaacctaacggtgtattcaca Alignment from CESAR CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg tgtccttcgcggctaggaatggccagcacttgactgtatctttctttcagCTATCTGAAGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTAAAGAATAGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTTCAGTACGCAAGCCAGCCTCTGGACTGAGCAACTTGGCACTGAGTGAGAGCTCTGCTGCCTCAGAGCCCTTATCACCTCAGCTCggtaagggtgatgccctgacttctactgctgaacctaacggtgtattcaca Alignment from Spaln_aa2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG tgtccttcgcggctaggaatggccagcacttgactgtatctttctttcagCTATCTGAAGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTAAAGAATAGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTTCAGTACGCAAGCCAGCCTCTGGACTGAGCAACTTGGCACTGAGTGAGAGCTCTGCTGCCTCAGAGCCCTTATCACCTCAGCTCGgtaagggtgatgccctgacttctactgctgaacctaacggtgtattcaca Alignment from Spaln_nt2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG tgtccttcgcggctaggaatggccagcacttgactgtatctttctttcagCTATCTGAAGGTATCCCGCTGCCTAGTCCACAGGACCTCATGG---GTATTCTGGTAAAGAATAGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTTCAGTACGCAAGCCAGCCTCTGGACTGAGCAACTTGGCACTGAGTGAGAGCTCTGCTGCCTCAGAGCCCTTATCACCTCAGCTCGgtaagggtgatgccctgacttctactgctgaacctaacggtgtattcaca Alignment from Pairagon CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAG-CGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG tgtccttcgcggctaggaatggccagcacttgactgtatctttctttcagCTATCTGAAGGTATCCCGCTGCCTAGTCCACAGGACCTCATGG---GTATTCTGGTAAAGAATAGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTTCAGTACGCAAGCCAGCCTCTGG-ACTGAGCAACTTGGCACTGAGTGAGAGCTCTGCTGCCTCAGAGCCCTTATCACCTCAGCTCGgtaagggtgatgccctgacttctactgctgaacctaacggtgtattcaca Alignment from Exonerate_protein2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG tgtccttcgcggctaggaatggccagcacttgactgtatctttctttcagCTATCTGAAGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTAAAGAATAGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTTCAGTACGCAAGCCAGCCTCTGGACTGAGCAACTTGGCACTGAGTGAGAGCTCTGCTGCCTCAGAGCCCTTATCACCTCAGCTCGgtaagggtgatgccctgacttctactgctgaacctaacggtgtattcaca Alignment from Exonerate_coding2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG tgtccttcgcggctaggaatggccagcacttgactgtatctttctttcagCTATCTGAAGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTAAAGAATAGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTTCAGTACGCAAGCCAGCCTCTGGACTGAGCAACTTGGCACTGAGTGAGAGCTCTGCTGCCTCAGAGCCCTTATCACCTCAGCTCGgtaagggtgatgccctgacttctactgctgaacctaacggtgtattcaca Alignment from GeneWise CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTGGGTCC- tgtccttcgcggctaggaatggccagcacttgactgtatctttctttcagCTATCTGAAGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTAAAGAATAGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTTCAGTACGCAAGCCAGCCTCTGGACTGAGCAACTTGGCACTGAGTGAGAGCTCTGCTGCCTCAGAGCCCTTATCACCTCAGCTCGGTAAGGgtgatgccctgacttctactgctgaacctaacggtgtattcaca #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATG-AACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGCAACATAT-GGCTCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAgcgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGCAACATATGGCTCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAgcgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGCAACATATGGCTCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGCAACATATGGCTCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATG-AACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGCAACATA-TGGCTCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from Exonerate_protein2genome aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcaggtatggtcagaggagttgtttagactagccatgcaacatatggctcagaatgcctcccagaacaccttcctgcggaaagcgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from Exonerate_coding2genome aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcaggtatggtcagaggagttgtttagactagccatgcaacatatggctcagaatgcctcccagaacaccttcctgcggaaagcgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccccctgcccccttctcccaatctggtgaccagggaccctcctgcagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGCAACATATGGCTCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtaagcctgcggctacttagggagtgctgggagttccactgtgggagttt #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGCGATATCA-CTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGCGATATCACTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGCGATATCACTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGCGATATCACTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Pairagon GAGGTGGACACACTG-GACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGCGATATCA-CTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Exonerate_protein2genome aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaaggaggtggacacactgcgatatcactccatcagagacacaagaacaggtcgttatgcccgcctgcccaaagtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Exonerate_coding2genome aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaaggaggtggacacactgcgatatcactccatcagagacacaagaacaggtcgttatgcccgcctgcccaaagtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGCGATATCACTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat #### Pnlip_ID12748_7 --> 2 - 1 Original Alignment gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGAC-ATCGACGGGATCTGGGAAg gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaaggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATCATCG-CGGGATCTGGGAAggtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from CESAR gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaaggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATCATCGCGGGATCTGGGAAggtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Spaln_aa2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATCATCGCGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Spaln_nt2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATCATCGCGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Pairagon GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGA-CATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATCATCG-CGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Exonerate_protein2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATCATCGCGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Exonerate_coding2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATCATCGCGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from GeneWise GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATCATCGCGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa tgcagaaacttttccctcccagataacaactagattgcattgtcttccaggtTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCA-TGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCaagtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa tgcagaaacttttccctcccagataacaactagattgcattgtcttccaggtTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCATGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCaagtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCATGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCATGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCA-TGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCATGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCATGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGCAAGGTCATGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACG-TCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagcTCTTCAGGGACACCCAGACAGAT-CAGCAGAGTCCTTAAGCATATTCTGACACAGAGAaggtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagcTCTTCAGGGACACCCAGACAGATCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAaggtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCCAGACAGATCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from Spaln_nt2Genome CTCTTCCGGGACGTC-AGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCCAGACAGA-TCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from Pairagon CTCTTCCGGGACG-TCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCCAGACAGA-TCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCCAGACAGATCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from Exonerate_coding2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCCAGACAGATCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from GeneWise CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCCAGACAGATCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGG-GCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcaggtATCACTAGACTGCTGCAGCGCTGGAGTCGGCGCAGAGC-GATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from CESAR gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcaggtATCACTAGACTGCTGCAGCGCTGGAGTCGGCGCAGAGCGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from Spaln_aa2Genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGCGCAGAGCGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from Spaln_nt2Genome GTATCACAAG---GCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGCGCAGAGCGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from Pairagon GTATCACAAG---GCTGCAGCGCTGGAGTCGG-GCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGCGCAGAGC-GATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from Exonerate_protein2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGCGCAGAGCGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from Exonerate_coding2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGCGCAGAGCGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa Alignment from GeneWise GTATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC catgccactatgaccccctgcctgtcgcctttttctgctcccctctgcagGTATCACTAGACTGCTGCAGCGCTGGAGTCGGCGCAGAGCGATGGGCTTGAAGCCCCCTCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtatgtatagacccagacagcttcaggggacccaaggatgtctccaggaa #### Ppp1ca_ID408_2 --> 2 - 1 Original Alignment tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGG-GAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagtgCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGCGAGA-TTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTggtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from CESAR tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagtgCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGCGAGATTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTggtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Spaln_aa2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGCGAGATTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Spaln_nt2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGCGAGATTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Pairagon TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGCGAGATTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Exonerate_protein2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGCGAGATTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Exonerate_coding2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGCGAGATTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from GeneWise TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGCGAGATTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt #### Ppp1ca_ID412_6 --> 0 - 0 Original Alignment GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCC-AACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG ggtggtctcatgcctaacttaaagagtagctgcatacccatttcacacagGTTGTA---GATGGATATGAGTTCTTTGCAAAGAAACAGCTGGTCACACTCTTCTCGGCTCCCCAACTACT-TGGAGAGTTTGACAATGCTGGTGCCATGATGAGCGTGGACAAGACCCTCATATGTTCCAGAGCTTTTCCAgtaagggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from CESAR GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG ggtggtctcatgcctaacttaaagagtagctgcatacccatttcacacagGTTGTA---GATGGATATGAGTTCTTTGCAAAGAAACAGCTGGTCACACTCTTCTCGGCTCCCCAACTACTTGGAGAGTTTGACAATGCTGGTGCCATGATGAGCGTGGACAAGACCCTCATATGTTCCAGAGCTTTTCCAgtaagggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from Spaln_aa2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG ggtggtctcatgcctaacttaaagagtagctgcatacccatttcacacagGTTGTA---GATGGATATGAGTTCTTTGCAAAGAAACAGCTGGTCACACTCTTCTCGGCTCCCCAACTACTTGGAGAGTTTGACAATGCTGGTGCCATGATGAGCGTGGACAAGACCCTCATATGTTCCAGAGCTTTTCCAgtaagggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from Spaln_nt2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC-------TTCCA ggtggtctcatgcctaacttaaagagtagctgcatacccatttcacacagGTTGT---AGATGGATATGAGTTCTTTGCAAAGAAACAGCTGGTCACACTCTTCTCGGCTCCCCAACTACTTGGAGAGTTTGACAATGCTGGTGCCATGATGAGCGTGGACAAGACCCTCATATGTTCCAGAGCTTTTCCAgtaagggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from Pairagon GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCT-CCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC-------------------------------------------------------------- ggtggtctcatgcctaacttaaagagtagctgcatacccatttcacacagGTTGT---AGATGGATATGAGTTCTTTGCAAAGAAACAGCTGGTCACACTCTTCTCGGCTCCCCAACTACT-TGGAGAGTTTGACAATGCTGGTGCCATGATGAGCGTGGACAAGACCCTCATATGTTCCAGAGCTTTTCCAGTAAGGGTGGGGAATAGCCTGCCCTATAGAAGCTGGCTCAACCCTAGGAC Alignment from Exonerate_protein2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG ggtggtctcatgcctaacttaaagagtagctgcatacccatttcacacagGTTGTA---GATGGATATGAGTTCTTTGCAAAGAAACAGCTGGTCACACTCTTCTCGGCTCCCCAACTACTTGGAGAGTTTGACAATGCTGGTGCCATGATGAGCGTGGACAAGACCCTCATATGTTCCAGAGCTTTTCCAgtaagggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from Exonerate_coding2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG ggtggtctcatgcctaacttaaagagtagctgcatacccatttcacacagGTTGTA---GATGGATATGAGTTCTTTGCAAAGAAACAGCTGGTCACACTCTTCTCGGCTCCCCAACTACTTGGAGAGTTTGACAATGCTGGTGCCATGATGAGCGTGGACAAGACCCTCATATGTTCCAGAGCTTTTCCAgtaagggtggggaatagcctgccctatagaagctggctcaaccctaggac Alignment from GeneWise GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG ggtggtctcatgcctaacttaaagagtagctgcatacccatttcacacagGTTGTA---GATGGATATGAGTTCTTTGCAAAGAAACAGCTGGTCACACTCTTCTCGGCTCCCCAACTACTTGGAGAGTTTGACAATGCTGGTGCCATGATGAGCGTGGACAAGACCCTCATATGTTCCAGAGCTTTTCCAgtaagggtggggaatagcctgccctatagaagctggctcaaccctaggac #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGATGATTCT-TTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCCTGGTGT-TCTCTTTGGGAACCATTGGCTGAAAaggtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCCTGGTGTTCTCTTTGGGAACCATTGGCTGAAAaggtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCCTGGTGTTCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCCTGGTGTTCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from Pairagon GCGACAGACTTATTATTGGATGATTCT-TTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCCTGGTGT-TCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCCTGGTGTTCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from Exonerate_coding2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCCTGGTGTTCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from GeneWise TCCTGGCTGACCCCACTGGAGCCTTTGGGAAGGCGACAGACTTATTATTG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctaggtgacagacctattattggatgattctcctggtgttctctttgggaaccattggctgaaaagGTAAGCGAGACCCCTTCACCCCAACCTCACCCCCATGCCGATTGGTGCTA #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTG-GTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTACGTGGCCTGTC-AAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTACGTGGCCTGTCAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTACGTGGCCTGTCAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTACGTGGCCTGTCAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTG-GTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTACGTGGCCTGTC-AAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTACGTGGCCTGTCAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTACGTGGCCTGTCAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTACGTGGCCTGTCAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCC-ACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagtgGCACACCCAATCCGACCCAAGCCTCCCTCTGCCCACCAGTATCC-AGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctatactttccaactcttctcctcagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagtgGCACACCCAATCCGACCCAAGCCTCCCTCTGCCCACCAGTATCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCCACCAGTATCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctatactttccaactcttctcctcagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCCACCAGTATCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctatactttccaactcttctcctcagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCG-CCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCCACCAGTAT-CCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctatactttccaactcttctcctcagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCCACCAGTATCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctatactttccaactcttctcctcagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCCACCAGTATCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctatactttccaactcttctcctcagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCCACCAGTATCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGGTAAATCCTATACTTTCCAACTCTTCTCCTCAGGATGCAGTCATGCTGCA #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCC-ATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCCATGGATT-GGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from Pairagon GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCCATGGA-TTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCCATGGATTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACTGTG-CTAACCACGGAGCGTAAGAAG agcacactttgttccaaaataattatttttgtgttggctttgtgttccagCTTCAAGACAAGGCTACTGTGCTTAA-CACAGAACGAAAGAAGgtatccctgtctgttatgaacatggctgcatttttggaaagaagtgtagc Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agcacactttgttccaaaataattatttttgtgttggctttgtgttccagCTTCAAGACAAGGCTACTGTGCTTAACACAGAACGAAAGAAGgtatccctgtctgttatgaacatggctgcatttttggaaagaagtgtagc Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agcacactttgttccaaaataattatttttgtgttggctttgtgttccagCTTCAAGACAAGGCTACTGTGCTTAACACAGAACGAAAGAAGgtatccctgtctgttatgaacatggctgcatttttggaaagaagtgtagc Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agcacactttgttccaaaataattatttttgtgttggctttgtgttccagCTTCAAGACAAGGCTACTGTGCTTAACACAGAACGAAAGAAGgtatccctgtctgttatgaacatggctgcatttttggaaagaagtgtagc Alignment from Pairagon CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agcacactttgttccaaaataattatttttgtgttggctttgtgttccagCTTCAAGACAAGGCTACTGTGCTTAACACAGAACGAAAGAAGgtatccctgtctgttatgaacatggctgcatttttggaaagaagtgtagc Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agcacactttgttccaaaataattatttttgtgttggctttgtgttccagCTTCAAGACAAGGCTACTGTGCTTAACACAGAACGAAAGAAGgtatccctgtctgttatgaacatggctgcatttttggaaagaagtgtagc Alignment from Exonerate_coding2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agcacactttgttccaaaataattatttttgtgttggctttgtgttccagCTTCAAGACAAGGCTACTGTGCTTAACACAGAACGAAAGAAGgtatccctgtctgttatgaacatggctgcatttttggaaagaagtgtagc Alignment from GeneWise CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG agcacactttgttccaaaataattatttttgtgttggctttgtgttccagCTTCAAGACAAGGCTACTGTGCTTAACACAGAACGAAAGAAGgtatccctgtctgttatgaacatggctgcatttttggaaagaagtgtagc #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGCATTCCTGGG-ATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGCATTCTTG-TCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTggtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from CESAR GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGCATTCTTGTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTggtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGCATTCTTGTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGCATTCTTGTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Pairagon GGTCTACACAGTGCTAGCATTCCTGGG-ATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGCATTCTTG-TCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGCATTCTTGTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGCATTCTTGTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from GeneWise GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGCATTCTTGTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTG-ACAGATGAGACCTCCGGCTGCt gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGCACAGACG-GACCTCTGGCTGCtgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGCACAGACGGACCTCTGGCTGCtgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGCACAGACGGACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTG-ACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGCACAGACG-GACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from Pairagon TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTG-ACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGCACAGACG-GACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGCACAGACGGACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from Exonerate_coding2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGCACAGACGGACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGCACAGACGGACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGACACAGGAA-CATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGACACAGGAACATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGACACAGGAACATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGACACAGGAACATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGACACAGGAA-CATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGACACAGGAACATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGACACAGGAACATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGACACAGGAACATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat #### Pygm_ID1685_9 --> 0 - 0 Original Alignment GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCC-ATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCCATCCCGG-GCTGATGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from CESAR GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCCATCCCGGGCTGATGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Spaln_aa2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCCATCCCGGGCTGATGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Spaln_nt2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCCATCCCGGGCTGATGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Pairagon GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCCATCCCGGGCTGATGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Exonerate_protein2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCCATCCCGGGCTGATGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Exonerate_coding2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCCATCCCGGGCTGATGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from GeneWise GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCCATCCCGGGCTGATGAGGATTCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCCATGGAGA-ACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCCATGGAGAACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCCATGGAGAACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCCATGGAGAACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCT-CATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCCATGGAGA-ACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCCATGGAGAACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCCATGGAGAACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCCATGGAGAACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTG-AAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGCAAGG-GGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGCAAGGGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGCAAGGGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGCAAGGGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGCAAGGGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGCAAGGGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGCAAGGGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG ttttgtccaggctttagtgagaactccttactgggtcattatttctatagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAGCAGGCAACATCAGAAAAGCAGTTGCAAGGGGCTTGGGGCAAGgtgagttctagccctgtgtgcctaaggcagcccatggctcctggcattgc #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGT-CTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCCTCTTTTTGC-AGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGaggtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from CESAR TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCCTCTTTTTGCAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGaggtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCCTCTTTTTGCAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCCTCTTTTTGCAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from Pairagon TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGA-GGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCCTCTTTTTGC-AGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCCTCTTTTTGCAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from Exonerate_coding2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCCTCTTTTTGCAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCCTCTTTTTGCAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta #### Rce1_ID576_6 --> 2 - 1 Original Alignment TCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGA-AGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtgagcctcaccttgtgtccctgccccctttgcagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGTA-CTTTGTGTCTGCAggtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from CESAR TCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtacgtctcaccttgtgtccctgccccctttgcagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGTACTTTGTGTCTGCAggtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Spaln_aa2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGTACTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Spaln_nt2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGTACTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Pairagon TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGA-AGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGTA-CTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Exonerate_protein2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGTACTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Exonerate_coding2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGTACTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from GeneWise TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGCAGTACTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTG-CCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagccCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCCA-GCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTggtacgtctcacctaaattttttaatttgtttgtagccCATTTTCACCACA Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagccCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCCAGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTggtacgtctcaccttgtgtccctgccccctttgcagccCATTTTCACCACA Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCCAGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctaaattttttaatttgtttgtagCCCATTTTCACCACA Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCCAGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctaaattttttaatttgtttgtagCCCATTTTCACCACA Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCCAGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctaaattttttaatttgtttgtagCCCATTTTCACCACA Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCCAGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctaaattttttaatttgtttgtagCCCATTTTCACCACA Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCCAGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctaaattttttaatttgtttgtagCCCATTTTCACCACA Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCCAGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctaaattttttaatttgtttgtagCCCATTTTCACCACA #### Rce1_ID578_4 --> 0 - 1 Original Alignment ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGAC-CTGACAGATGGGCTGAAGGTTGTCCTGg attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCCTAACAG-TGGACTGAAGGTTGTTCTAggtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from CESAR ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCCTAACAGTGGACTGAAGGTTGTTCTAggtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from Spaln_aa2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCCTAACAGTGGACTGAAGGTTGTTCTAGgtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from Spaln_nt2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCCTAACAGTGGACTGAAGGTTGTTCTAGgtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from Pairagon ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCCTAACAGTGGACTGAAGGTTGTTCTAGgtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from Exonerate_protein2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCCTAACAGTGGACTGAAGGTTGTTCTAGgtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from Exonerate_coding2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCCTAACAGTGGACTGAAGGTTGTTCTAGgtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from GeneWise ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCCTAACAGTGGACTGAAGGTTGTTCTAGgtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg #### Rce1_ID579_3 --> 0 - 0 Original Alignment CCAGGCACATCACTGCTTACCTTGATG-GGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGCGGTTTCAGAC-GGAGGGCATTTTCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from CESAR CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGCGGTTTCAGACGGAGGGCATTTTCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Spaln_aa2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGCGGTTTCAGACGGAGGGCATTTTCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Spaln_nt2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGCGGTTTCAGACGGAGGGCATTTTCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Pairagon CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGCGGTTTCAGACGGAGGGCATTTTCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Exonerate_protein2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGCGGTTTCAGACGGAGGGCATTTTCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Exonerate_coding2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGCGGTTTCAGACGGAGGGCATTTTCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from GeneWise CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGCGGTTTCAGACGGAGGGCATTTTCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTT-TGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcaggGACCACCCCTCTGTTATCAAGCGGCATTCCACTAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTCTGCGTGCTGC-CTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTT-TGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcaggGACCACCCCTCTGTTATCAAGCGGCATTCCACTAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTCTGCGTGCTG-CCTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTCTGCGTGCTGCCTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTCTGCGTGCTGCCTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTT-TGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTCTGCGTGCTGC-CTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTCTGCGTGCTGCCTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTCTGCGTGCTGCCTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG catcagcatggtcacaagtacctcccagtgtttctctcttcctctttcagGGACCACCCCTCTGTTATCAAGCGGCATTCCACTAGTGTTCTTGTAGTGTCCAGCTTGTCCCCTCTTCTGCGTGCTGCCTGGAGGGAACTCACTGGTATCCAGgtgagcaggaggagggtgaggcactaggcagcaaaggaagagtctagaat #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGT-GGCCGCAAGGACAAAGAAGACag ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTCGGCC-CAAGGACAAAGAAGACaggtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTCGGCCCAAGGACAAAGAAGACaggtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTCGGCCCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTCGGCCCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTCGGCCCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTCGGCCCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTCGGCCCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ttgaggggagagtctcatttggcctcctctccaacctctgtgccctccagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACCCGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGCTGGGTCGGCCCAAGGACAAAGAAGACAGgtgaggagtgcagcttctgaccttgggaaatgggtagggggctaaaagta #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAG-GGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagtGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGCGGGGAGC-GGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagtGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGCGGGGAGCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGCGGGGAGCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGCGGGGAGCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGCGGGGAGCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGCGGGGAGCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGCGGGGAGCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGCGGGGAGCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAGTTCAACTCCCGCTGGACCACT-GATGAGCAACTTCTAGCTGTTCAAg ctttccatatttttggctttccttgatgtatcccctctccccctgtgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTCGACGAGC-ACTTCTAGCAGTTCAAggtaaggcaggccattgtgagtctcaagaactccagagacctttaatcttt Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg ctttccatatttttggctttccttgatgtatcccctctccccctgtgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTCGACGAGCACTTCTAGCAGTTCAAggtaaggcaggccattgtgagtctcaagaactccagagacctttaatcttt Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ctttccatatttttggctttccttgatgtatcccctctccccctgtgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTCGACGAGCACTTCTAGCAGTTCAAGgtaaggcaggccattgtgagtctcaagaactccagagacctttaatcttt Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACT-GATGAGCAACTTCTAGCTGTTCAAG ctttccatatttttggctttccttgatgtatcccctctccccctgtgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTCGACGAGC-ACTTCTAGCAGTTCAAGgtaaggcaggccattgtgagtctcaagaactccagagacctttaatcttt Alignment from Pairagon GCTAATACCAAGTTCAACTCCCGCTGGACCACT-GATGAGCAACTTCTAGCTGTTCAAG ctttccatatttttggctttccttgatgtatcccctctccccctgtgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTCGACGAGC-ACTTCTAGCAGTTCAAGgtaaggcaggccattgtgagtctcaagaactccagagacctttaatcttt Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ctttccatatttttggctttccttgatgtatcccctctccccctgtgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTCGACGAGCACTTCTAGCAGTTCAAGgtaaggcaggccattgtgagtctcaagaactccagagacctttaatcttt Alignment from Exonerate_coding2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ctttccatatttttggctttccttgatgtatcccctctccccctgtgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTCGACGAGCACTTCTAGCAGTTCAAGgtaaggcaggccattgtgagtctcaagaactccagagacctttaatcttt Alignment from GeneWise GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ctttccatatttttggctttccttgatgtatcccctctccccctgtgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTCGACGAGCACTTCTAGCAGTTCAAGgtaaggcaggccattgtgagtctcaagaactccagagacctttaatcttt #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAG-CAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATG-GGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAG-CAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGAT-GGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatacttacacctttgtcctatcagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCCAGGATGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagagaaaggaataagtctcaaggaggaggtgagtctctatggaacac #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCT-GGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG aattgggggttgcatgaagagcacctgactactttatttcctatgaacagaaCCAGCCCAGGCTTCTCGGGC-TTATGTGGAAATCATCAAACAACCAAAGCAACAGGGCATGCGTTTCCGCTATAAATCCGAGGGGCGCTCAGAAGGTGGTATCCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtgagtaagggcctgcaaggttgccgagcaaacttgctcccaggtcattg Alignment from CESAR agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG aattgggggttgcatgaagagcacctgactactttatttcctatgaacagaaCCAGCCCAGGCTTCTCGGGCTTATGTGGAAATCATCAAACAACCAAAGCAACAGGGCATGCGTTTCCGCTATAAATCCGAGGGGCGCTCAGAAGGTGGTATCCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtgagtaagggcctgcaaggttgccgagcaaacttgctcccaggtcattg Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG aattgggggttgcatgaagagcacctgactactttatttcctatgaacagAACCAGCCCAGGCTTCTCGGGCTTATGTGGAAATCATCAAACAACCAAAGCAACAGGGCATGCGTTTCCGCTATAAATCCGAGGGGCGCTCAGAAGGTGGTATCCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtgagtaagggcctgcaaggttgccgagcaaacttgctcccaggtcattg Alignment from Spaln_nt2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG aattgggggttgcatgaagagcacctgactactttatttcctatgaacagAACCAGCCCAGGCTTCTCGGGCTTATGTGGAAATCATCAAACAACCAAAGCAACAGGGCATGCGTTTCCGCTATAAATCCGAGGGGCGCTCAGAAGGTGGTATCCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtgagtaagggcctgcaaggttgccgagcaaacttgctcccaggtcattg Alignment from Pairagon AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG aattgggggttgcatgaagagcacctgactactttatttcctatgaacagAACCAGCCCAGGCTTCTCGGGCTTATGTGGAAATCATCAAACAACCAAAGCAACAGGGCATGCGTTTCCGCTATAAATCCGAGGGGCGCTCAGAAGGTGGTATCCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtgagtaagggcctgcaaggttgccgagcaaacttgctcccaggtcattg Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG aattgggggttgcatgaagagcacctgactactttatttcctatgaacagAACCAGCCCAGGCTTCTCGGGCTTATGTGGAAATCATCAAACAACCAAAGCAACAGGGCATGCGTTTCCGCTATAAATCCGAGGGGCGCTCAGAAGGTGGTATCCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtgagtaagggcctgcaaggttgccgagcaaacttgctcccaggtcattg Alignment from Exonerate_coding2genome TCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG aattgggggttgcatgaagagcacctgactactttatttcctatgaACAGAACCAGCCCAGGCTTCTCGGGCTTATGTGGAAATCATCAAACAACCAAAGCAACAGGGCATGCGTTTCCGCTATAAATCCGAGGGGCGCTCAGAAGGTGGTATCCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtgagtaagggcctgcaaggttgccgagcaaacttgctcccaggtcattg Alignment from GeneWise TCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG aattgggggttgcatgaagagcacctgactactttatttcctatgaACAGAACCAGCCCAGGCTTCTCGGGCTTATGTGGAAATCATCAAACAACCAAAGCAACAGGGCATGCGTTTCCGCTATAAATCCGAGGGGCGCTCAGAAGGTGGTATCCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtgagtaagggcctgcaaggttgccgagcaaacttgctcccaggtcattg #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCT-GACCTCTGCCCAGACCGCAGTATCCATag gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTCGACCTCTGCC-AGACCGCAGTATCCATaggtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from CESAR ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTCGACCTCTGCCAGACCGCAGTATCCATaggtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTCGACCTCTGCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTCGACCTCTGCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Pairagon ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCT-GACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTCGACCTCTG-CCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTCGACCTCTGCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Exonerate_coding2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTCGACCTCTGCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from GeneWise ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTCGACCTCTGCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCAC-GTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttaggCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCCGCCGCACTGCATCGTGC-AAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from CESAR gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttaggCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCCGCCGCACTGCATCGTGCAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCCGCCGCACTGCATCGTGCAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCCGCCGCACTGCATCGTGCAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from Pairagon GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCA-CGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCCGCCGCACTGCATCGTGC-AAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCCGCCGCACTGCATCGTGCAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from Exonerate_coding2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCCGCCGCACTGCATCGTGCAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg Alignment from GeneWise GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggataggaagatgtggtcgctcctgttccaaaccttttgttttagGCCTTCCACAGACCCACTGTACGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACAGTGAGCCTCCATGAGCGGCTCCTGATCACCCGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCCGCCGCACTGCATCGTGCAAGGACAGAGCCTCCAGGGgtacttcatcttacttcccagtttgtcaaatccaagcctgacgaggatgg #### Rin1_ID808_3 --> 0 - 1 Original Alignment ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCT-AGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTCAGTGGCCCCT-TTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from CESAR ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTCAGTGGCCCCTTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Spaln_aa2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTCAGTGGCCCCTTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Spaln_nt2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTCAGTGGCCCCTTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Pairagon ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCT-AGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTCAGTGGCCCCT-TTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Exonerate_protein2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTCAGTGGCCCCTTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Exonerate_coding2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTCAGTGGCCCCTTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from GeneWise ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTCAGTGGCCCCTTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCA-GAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg ctcccagacctctgaggaggctggactcattttctgccccttgttggcaggaGAAAATGCAGGAGCTGATGAGTTCCTTCCCCTGCTAAGCCTCGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCACGAGCTTCTCG-ACCAACCCTGCTCACTGCTGGGGAGggtaaggatccctcattgcttctctagttggacctggcacttgtggataaa Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg ctcccagacctctgaggaggctggactcattttctgccccttgttggcaggaGAAAATGCAGGAGCTGATGAGTTCCTTCCCCTGCTAAGCCTCGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCACGAGCTTCTCGACCAACCCTGCTCACTGCTGGGGAGggtaaggatccctcattgcttctctagttggacctggcacttgtggataaa Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG ctcccagacctctgaggaggctggactcattttctgccccttgttggcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCTGCTAAGCCTCGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCACGAGCTTCTCGACCAACCCTGCTCACTGCTGGGGAGGgtaaggatccctcattgcttctctagttggacctggcacttgtggataaa Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCA-GAGCTCCTGGAACCCACCCTGCTCACTG---GAGAGG ctcccagacctctgaggaggctggactcattttctgccccttgttggcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCTGCTAAGCCTCGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCACGAGCTTCTCG-ACCAACCCTGCTCACTGCTGGGGAGGgtaaggatccctcattgcttctctagttggacctggcacttgtggataaa Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCA-GAGCTCCTGGAACCCACCCTGCTCA---CTGGAGAGG ctcccagacctctgaggaggctggactcattttctgccccttgttggcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCTGCTAAGCCTCGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCACGAGCTTCTCG-ACCAACCCTGCTCACTGCTGGGGAGGgtaaggatccctcattgcttctctagttggacctggcacttgtggataaa Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG ctcccagacctctgaggaggctggactcattttctgccccttgttggcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCTGCTAAGCCTCGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCACGAGCTTCTCGACCAACCCTGCTCACTGCTGGGGAGGgtaaggatccctcattgcttctctagttggacctggcacttgtggataaa Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG ctcccagacctctgaggaggctggactcattttctgccccttgttggcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCTGCTAAGCCTCGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCACGAGCTTCTCGACCAACCCTGCTCACTGCTGGGGAGGgtaaggatccctcattgcttctctagttggacctggcacttgtggataaa Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG ctcccagacctctgaggaggctggactcattttctgccccttgttggcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCTGCTAAGCCTCGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCACGAGCTTCTCGACCAACCCTGCTCACTGCTGGGGAGGgtaaggatccctcattgcttctctagttggacctggcacttgtggataaa #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGT-TGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGACTGGCCCA-CCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGACTGGCCCACCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGACTGGCCCACCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Spaln_nt2Genome ACTTCG -ACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGT-TGGCCCAGCCTCGCAGCAGCG TTTTGGgtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGACTGGCCCA-CCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGG-TTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGACTGGCCCA-CCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Exonerate_protein2genome ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctaggaccgccttatcggggccaccggaagcttcagccatttcacattgtggggtcttgaaacagtcccaggtccagatgccaaagtgcatagggccctaggactggcccacctagcagcagcagtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATT ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGACTGGCCCACCTAGCAGCAGCAGTAcctagacttaggagcccctttttacctctgacagctgacaattcctc #### Rpp30_ID7088_8 --> 0 - 0 Original Alignment AATGTAATTCTG-TCCAGTGCTGCAGAAAGG atgttattgatcatctaagattttccttatatgtacctctttgttttcagAATGTAATTCTGCTCAA-TACTGCAGAGAGAgtgactatatggcaactcttatagttgcagttcatatcaccttattgcta Alignment from CESAR AATGTAATTCTGTCCAGTGCTGCAGAAAGG atgttattgatcatctaagattttccttatatgtacctctttgttttcagAATGTAATTCTGCTCAATACTGCAGAGAGAgtgactatatggcaactcttatagttgcagttcatatcaccttattgcta Alignment from Spaln_aa2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG atgttattgatcatctaagattttccttatatgtacctctttgttttcagAATGTAATTCTGCTCAATACTGCAGAGAGAgtgactatatggcaactcttatagttgcagttcatatcaccttattgcta Alignment from Spaln_nt2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG atgttattgatcatctaagattttccttatatgtacctctttgttttcagAATGTAATTCTGCTCAATACTGCAGAGAGAgtgactatatggcaactcttatagttgcagttcatatcaccttattgcta Alignment from Pairagon AATGTAATTCTGTCCAGTGCTGCAGAAAGG atgttattgatcatctaagattttccttatatgtacctctttgttttcagAATGTAATTCTGCTCAATACTGCAGAGAGAgtgactatatggcaactcttatagttgcagttcatatcaccttattgcta Alignment from Exonerate_protein2genome atgttattgatcatctaagattttccttatatgtacctctttgttttcagaatgtaattctgctcaatactgcagagagagtgactatatggcaactcttatagttgcagttcatatcaccttattgcta Alignment from Exonerate_coding2genome atgttattgatcatctaagattttccttatatgtacctctttgttttcagaatgtaattctgctcaatactgcagagagagtgactatatggcaactcttatagttgcagttcatatcaccttattgcta Alignment from GeneWise atgttattgatcatctaagattttccttatatgtacctctttgttttcagaatgtaattctgctcaatactgcagagagagtgactatatggcaactcttatagttgcagttcatatcaccttattgcta #### Rpp30_ID7089_9 --> 0 - 2 Original Alignment CCTTTGGAAATAAGAGGA-CCATATGACGTGGCAAACtt gtaaacaacccttacaatggtttatacagtttctttgcctgtctctctagCCCTTGGAAATAAGAGGACCCAT-CGATGTGGCTAACttgtagggtctcagtataatgtttatcagtataatgtttggggtagctctct Alignment from CESAR CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACtt gtaaacaacccttacaatggtttatacagtttctttgcctgtctctctagCCCTTGGAAATAAGAGGACCCATCGATGTGGCTAACttgtagggtctcagtataatgtttatcagtataatgtttggggtagctctct Alignment from Spaln_aa2Genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtaaacaacccttacaatggtttatacagtttctttgcctgtctctctagCCCTTGGAAATAAGAGGACCCATCGATGTGGCTAACTTgtagggtctcagtataatgtttatcagtataatgtttggggtagctctct Alignment from Spaln_nt2Genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtaaacaacccttacaatggtttatacagtttctttgcctgtctctctagCCCTTGGAAATAAGAGGACCCATCGATGTGGCTAACTTgtagggtctcagtataatgtttatcagtataatgtttggggtagctctct Alignment from Pairagon CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtaaacaacccttacaatggtttatacagtttctttgcctgtctctctagCCCTTGGAAATAAGAGGACCCATCGATGTGGCTAACTTgtagggtctcagtataatgtttatcagtataatgtttggggtagctctct Alignment from Exonerate_protein2genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtaaacaacccttacaatggtttatacagtttctttgcctgtctctctagCCCTTGGAAATAAGAGGACCCATCGATGTGGCTAACTTgtagggtctcagtataatgtttatcagtataatgtttggggtagctctct Alignment from Exonerate_coding2genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtaaacaacccttacaatggtttatacagtttctttgcctgtctctctagCCCTTGGAAATAAGAGGACCCATCGATGTGGCTAACTTgtagggtctcagtataatgtttatcagtataatgtttggggtagctctct Alignment from GeneWise CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtaaacaacccttacaatggtttatacagtttctttgcctgtctctctagCCCTTGGAAATAAGAGGACCCATCGATGTGGCTAACTTgtagggtctcagtataatgtttatcagtataatgtttggggtagctctct #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTC-ACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCCACAC-GCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCCACACGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCCACACGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCCACACGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATT-CACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCCACAC-GCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCCACACGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCCACACGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCCACACGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat #### Rps6kb2_ID373_9 --> 1 - 0 Original Alignment gGCCCCAGAGATTCTA-GTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctaggGCGCCAGAGATTCTACTTGCGCA-AGGTCATAATCGGGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGACATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from CESAR gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctaggGCGCCAGAGATTCTACTTGCGCAAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGACATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from Spaln_aa2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTACTTGCGCAAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGACATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from Spaln_nt2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTACTTGCGCAAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGACATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from Pairagon GGCCCCAGAGATTCTAG-TGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTACTTGCGCAA-GGTCATAATCGGGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGACATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from Exonerate_protein2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTACTTGCGCAAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGACATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from Exonerate_coding2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTACTTGCGCAAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGACATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc Alignment from GeneWise GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacaaagggcctacacttacagaatcatgtgtttgcattcctagGGCGCCAGAGATTCTACTTGCGCAAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTCGGGGCCCTAATGTATGACATGCTCACTGAATCAgtgattcaacttcactggtggtgttaaggagatgttgcagggagctcttc #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAG-ATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagcTTCTACCTGGCAGAGCATCACAC-GGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagcTTCTACCTGGCAGAGCATCACACGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGCATCACACGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGCATCACACGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Pairagon CTTCTACCTGGCAGAG-ATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGCATCACAC-GGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGCATCACACGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGCATCACACGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGCATCACACGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAAGAAGTAGAG-CTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttaggACAGTGGGACACTATGAAGAAGTAGAGCCTGACAG-GAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from CESAR gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttaggACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from Pairagon GACAGTGGGACACTATGAAGAAGTAGAG-CTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAG-GAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from Exonerate_coding2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCCTGACAGGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact #### Rrp12_ID8299_24 --> 2 - 1 Original Alignment acGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTT-CTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAg gggtacaagatggccagtctttgagcaaacctgtctgggtttggaaacagatGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTG-GTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAggtgagttggatggactgctcttagcaaatcaagcatacttgacggatgag Alignment from CESAR acGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAg gggtacaagatggccagtctttgagcaaacctgtctgggtttggaaacagatGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAggtgagttggatggactgctcttagcaaatcaagcatacttgacggatgag Alignment from Spaln_aa2Genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gggtacaagatggccagtctttgagcaaacctgtctgggtttggaaacagATGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggactgctcttagcaaatcaagcatacttgacggatgag Alignment from Spaln_nt2Genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gggtacaagatggccagtctttgagcaaacctgtctgggtttggaaacagATGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggactgctcttagcaaatcaagcatacttgacggatgag Alignment from Pairagon ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTT-CTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gggtacaagatggccagtctttgagcaaacctgtctgggtttggaaacagATGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTG-GTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggactgctcttagcaaatcaagcatacttgacggatgag Alignment from Exonerate_protein2genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gggtacaagatggccagtctttgagcaaacctgtctgggtttggaaacagATGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggactgctcttagcaaatcaagcatacttgacggatgag Alignment from Exonerate_coding2genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gggtacaagatggccagtctttgagcaaacctgtctgggtttggaaacagATGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggactgctcttagcaaatcaagcatacttgacggatgag Alignment from GeneWise ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gggtacaagatggccagtctttgagcaaacctgtctgggtttggaaacagATGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggactgctcttagcaaatcaagcatacttgacggatgag #### Rrp12_ID8303_20 --> 1 - 0 Original Alignment aTTGTCTGTCCTGGATCTGGTTGTGGCTTTG-GCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagaTTGTCTGTTCTAGATCTGGTTGTGGCTTTGCGCTCCTT-TTCAGATGAAGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from CESAR aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagaTTGTCTGTTCTAGATCTGGTTGTGGCTTTGCGCTCCTTTTCAGATGAAGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Spaln_aa2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGCGCTCCTTTTCAGATGAAGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Spaln_nt2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGCGCTCCTTTTCAGATGAAGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Pairagon ATTGTCTGTCCTGGATCTGGTTGTGGCTTTG-GCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGCGCTCCTT-TTCAGATGAAGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Exonerate_protein2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGCGCTCCTTTTCAGATGAAGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Exonerate_coding2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGCGCTCCTTTTCAGATGAAGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from GeneWise ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGCGCTCCTTTTCAGATGAAGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt #### Rrp12_ID8304_19 --> 0 - 2 Original Alignment TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAG-AAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCTTCCTGGACAAGGCAACCGAGCAAGGTTCTCG-CCCTGCCAGCTCGGATTTCACCaggtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from CESAR TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCTTCCTGGACAAGGCAACCGAGCAAGGTTCTCGCCCTGCCAGCTCGGATTTCACCaggtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from Spaln_aa2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCTTCCTGGACAAGGCAACCGAGCAAGGTTCTCGCCCTGCCAGCTCGGATTTCACCAGgtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from Spaln_nt2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAG-AAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCTTCCTGGACAAGGCAACCGAGCAAGGTTCTCG-CCCTGCCAGCTCGGATTTCACCAGgtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from Pairagon TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAG-AAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCTTCCTGGACAAGGCAACCGAGCAAGGTTCTCG-CCCTGCCAGCTCGGATTTCACCAGgtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from Exonerate_protein2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCTTCCTGGACAAGGCAACCGAGCAAGGTTCTCGCCCTGCCAGCTCGGATTTCACCAGgtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from Exonerate_coding2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCTTCCTGGACAAGGCAACCGAGCAAGGTTCTCGCCCTGCCAGCTCGGATTTCACCAGgtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag Alignment from GeneWise TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgatgccatggtcactccatttaaactgtctccctaccgccacagCTGGTGAATAGCTTCCTGGACAAGGCAACCGAGCAAGGTTCTCGCCCTGCCAGCTCGGATTTCACCAGgtaagattgctgagcttcctcatgtgccgtgggagatgcagggtacctag #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTG-AGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagagGCAGACCGAGCTGAAGTGCAGCC-CTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAGACAGCC---CCCCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from CESAR agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagagGCAGACCGAGCTGAAGTGCAGCCCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCCCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGCAGCCCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCCCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGCAGCCCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGA---GACAGCCCCCCGCCGTGCTGTGCTGGAAAT---CAAAACTTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGCAGCCCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGA---GACAGCCCCCCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGCAGCCCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCCCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from Exonerate_coding2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGCAGCCCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCCCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttattatcggctttttccaatcaacggggccatttttgctgtttccagAGGCAGACCGAGCTGAAGTGCAGCCCTTTGCCAAAAACTTTCTGCCAATCCTCTTTAACCTGTATGGGCAACCAGTTGCAGCTGGAGAGACAGCC---CCCCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACTGTAACTGAGGCCCAGgtaagtactgtgccttggaagggtcaacaatccctccaggtgctggaggt #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTG-GGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGCGGCACTGTGG-ATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATgcgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGCGGCACTGTGGATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATgcgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGCGGCACTGTGGATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGCGGCACTGTGGATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTG-GGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGCGGCACTGTGG-ATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGCGGCACTGTGGATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGCGGCACTGTGGATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGCGGCACTGTGGATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGAC-TTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttaggGCCATTGATGACAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACCTTCAAGG-GAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from CESAR gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttaggGCCATTGATGACAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACCTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from Spaln_aa2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACCTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from Spaln_nt2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACCTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from Pairagon GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACCTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from Exonerate_protein2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACCTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from Exonerate_coding2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACCTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from GeneWise GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACCTTCAAGGGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAA-GAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAACGAGAACA-TGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from CESAR GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAACGAGAACATGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAACGAGAACATGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAACGAGAACATGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Pairagon GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAA-GAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAACGAGAACA-TGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAACGAGAACATGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Exonerate_coding2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAACGAGAACATGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from GeneWise GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAACGAGAACATGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGC-CAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCCAGCGTG-CTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCCAGCGTGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCCAGCGTGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCCAGCGTGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCG-CCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCCAGCGT-GCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCCAGCGTGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCCAGCGTGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGAAGAAACTAGAGTCCCGTCCAGCGTGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAG-AAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcgagcagcttatgttattttaaactccagaaGATGGGGGGGCTCTCCCACCAGGGTCACCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTAG-GAAGGGGCGTCGGCTGCGGCAGCTACAGCAACTGCAGCAGCTCAGAGATAGTGGTGAGAAGgtaagacagtgcaaggacatcatgtgggacttatctctgagtgcatgagg Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcgagcagcttatgttattttaaactccagaaGATGGGGGGGCTCTCCCACCAGGGTCACCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTAGGAAGGGGCGTCGGCTGCGGCAGCTACAGCAACTGCAGCAGCTCAGAGATAGTGGTGAGAAGgtaagacagtgcaaggacatcatgtgggacttatctctgagtgcatgagg Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcgagcagcttatgttattttaaactccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTAGGAAGGGGCGTCGGCTGCGGCAGCTACAGCAACTGCAGCAGCTCAGAGATAGTGGTGAGAAGgtaagacagtgcaaggacatcatgtgggacttatctctgagtgcatgagg Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcgagcagcttatgttattttaaactccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTAGGAAGGGGCGTCGGCTGCGGCAGCTACAGCAACTGCAGCAGCTCAGAGATAGTGGTGAGAAGgtaagacagtgcaaggacatcatgtgggacttatctctgagtgcatgagg Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAG-AAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcgagcagcttatgttattttaaactccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTAG-GAAGGGGCGTCGGCTGCGGCAGCTACAGCAACTGCAGCAGCTCAGAGATAGTGGTGAGAAGgtaagacagtgcaaggacatcatgtgggacttatctctgagtgcatgagg Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcgagcagcttatgttattttaaactccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTAGGAAGGGGCGTCGGCTGCGGCAGCTACAGCAACTGCAGCAGCTCAGAGATAGTGGTGAGAAGgtaagacagtgcaaggacatcatgtgggacttatctctgagtgcatgagg Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcgagcagcttatgttattttaaactccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTAGGAAGGGGCGTCGGCTGCGGCAGCTACAGCAACTGCAGCAGCTCAGAGATAGTGGTGAGAAGgtaagacagtgcaaggacatcatgtgggacttatctctgagtgcatgagg Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgcgagcagcttatgttattttaaactccagAAGATGGGGGGGCTCTCCCACCAGGGTCACCAGATGGGCTGGAGGAAGATGAGGCAGAGCTGGAGCTGCAGCAAGCAGCTAGGAAGGGGCGTCGGCTGCGGCAGCTACAGCAACTGCAGCAGCTCAGAGATAGTGGTGAGAAGgtaagacagtgcaaggacatcatgtgggacttatctctgagtgcatgagg #### Sart1_ID965_10 --> 0 - 2 Original Alignment GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATC-CGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCCAGAAAGA-GGAGCAGGAGGTGATAATGCGGGCTGATGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAaggtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from CESAR GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCCAGAAAGAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAaggtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from Spaln_aa2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCCAGAAAGAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from Spaln_nt2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCCAGAAAGAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGG---CTTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from Pairagon GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCCAGAAAGAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGG---CTTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from Exonerate_protein2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCCAGAAAGAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from Exonerate_coding2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCCAGAAAGAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac Alignment from GeneWise GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctactcactcctaaccctgacatacttttctagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAGAAAACCCAGAAAGAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTGCTGCCTCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtagctatggatgtagtagtgggtgtgaggtggagcagcttaaaagatac #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCA-CATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACCATTCCT-CCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACCATTCCTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACCATTCCTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACCATTCCTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Pairagon CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACCATTCCTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACCATTCCTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACCATTCCTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACCATTCCTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCC-TATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagggGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCCTATGTGGAAG-TGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagggGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCCTATGTGGAAGTGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCCTATGTGGAAGTGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTG-CCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCCTATGTGGAAG-TGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTG-CCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCCTATGTGGAAG-TGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCCTATGTGGAAGTGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCCTATGTGGAAGTGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCCTATGTGGAAGTGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAG-AAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagcAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGCAAGGATC-GGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagcAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGCAAGGATCGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGCAAGGATCGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAG-AAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGCAAGGATC-GGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGCAAGGATCGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGCAAGGATCGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGCAAGGATCGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGCAAGGATCGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag #### Sart1_ID971_4 --> 2 - 2 Original Alignment agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCC-AAGGAAAAACGCTTGCTGAACCAAAAATTGgg tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagagGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGCAGCTGCCCAAGGAAA-ATGCTTGTTGAACCAAAAGTTGgggtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from CESAR agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagagGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGCAGCTGCCCAAGGAAAATGCTTGTTGAACCAAAAGTTGgggtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Spaln_aa2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGCAGCTGCCCAAGGAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Spaln_nt2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGCAGCTGCCCAAGGAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Pairagon AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGCAGCTGCCCAAGGAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Exonerate_protein2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGCAGCTGCCCAAGGAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Exonerate_coding2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGCAGCTGCCCAAGGAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from GeneWise AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAGGCTGGCAGCTGCCCAAGGAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag #### Sart1_ID972_3 --> 1 - 1 Original Alignment tAAACTCCGAGCAAAG-TTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAg attggaaggcccccttctcagggcctaacttttcttttctttttccccagtAAACTTCAAGCAAAGCTTGGGGC-GAGGCCCCTGGAGGTCAATGCTGTTCAAAAAggtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from CESAR tAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAg attggaaggcccccttctcagggcctaacttttcttttctttttccccagtAAACTTCAAGCAAAGCTTGGGGCGAGGCCCCTGGAGGTCAATGCTGTTCAAAAAggtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from Spaln_aa2Genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaaggcccccttctcagggcctaacttttcttttctttttccccagTAAACTTCAAGCAAAGCTTGGGGCGAGGCCCCTGGAGGTCAATGCTGTTCAAAAAGgtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from Spaln_nt2Genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaaggcccccttctcagggcctaacttttcttttctttttccccagTAAACTTCAAGCAAAGCTTGGGGCGAGGCCCCTGGAGGTCAATGCTGTTCAAAAAGgtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from Pairagon TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaaggcccccttctcagggcctaacttttcttttctttttccccagTAAACTTCAAGCAAAGCTTGGGGCGAGGCCCCTGGAGGTCAATGCTGTTCAAAAAGgtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from Exonerate_protein2genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaaggcccccttctcagggcctaacttttcttttctttttccccagTAAACTTCAAGCAAAGCTTGGGGCGAGGCCCCTGGAGGTCAATGCTGTTCAAAAAGgtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from Exonerate_coding2genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaaggcccccttctcagggcctaacttttcttttctttttccccagTAAACTTCAAGCAAAGCTTGGGGCGAGGCCCCTGGAGGTCAATGCTGTTCAAAAAGgtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from GeneWise TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaaggcccccttctcagggcctaacttttcttttctttttccccagTAAACTTCAAGCAAAGCTTGGGGCGAGGCCCCTGGAGGTCAATGCTGTTCAAAAAGgtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCC-CAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttaggaCCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCCAGGGAA-CCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttaggaCCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCCAGGGAACCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCCAGGGAACCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCCAGGGAACCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCCAGGGAACCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCCAGGGAACCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCCAGGGAACCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCCAGGGAACCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTA-AAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTACAAAAAGAATT-GAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTggtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTACAAAAAGAATTGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTggtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTACAAAAAGAATTGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTACAAAAAGAATTGAAGGACCTTGTGTGTGCCTGTCGACT---GAACTGGAGAGAGGCACTGGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Pairagon CTTCTAGCCTGTGTTGTA-AAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTACAAAAAGAATT-GAAGGACCTTGTGTGTGCCTGTCGACT---GAACTGGAGAGAGGCACTGGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTACAAAAAGAATTGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTACAAAAAGAATTGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTACAAAAAGAATTGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACTGCC-AAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCCAAGGAAACCT-TGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACATGACCCCCTGGGTGATCCCCACTACAGAAggtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCCAAGGAAACCTTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACATGACCCCCTGGGTGATCCCCACTACAGAAggtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCCAAGGAAACCTTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCCAAGGAAACCTTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from Pairagon GCCTCCAAACACACTG-CCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCCAAGGAAACCT-TGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCCAAGGAAACCTTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from Exonerate_coding2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCCAAGGAAACCTTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCCAAGGAAACCTTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa #### Sec31b_ID9040_12 --> 0 - 0 Original Alignment GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCT-CAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCCAGCTTG-GGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from CESAR GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCCAGCTTGGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Spaln_aa2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCCAGCTTGGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Spaln_nt2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCCAGCTTGGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Pairagon GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCT-CAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCCAGCTTG-GGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Exonerate_protein2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCCAGCTTGGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Exonerate_coding2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCCAGCTTGGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from GeneWise GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCCAGCTTGGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGG-TGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgacatctgttcctcatcctgttacgctgtttaaccagGTAGTCTACAAGCTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCA-CCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCACATGAGGCAGGCTGATAAGgtaaacagcaattgcttgagagtgttgggggggggagctgtttgtgtgag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgacatctgttcctcatcctgttacgctgtttaaccagGTAGTCTACAAGCTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCACCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCACATGAGGCAGGCTGATAAGgtaaacagcaattgcttgagagtgttgggggggggagctgtttgtgtgag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgacatctgttcctcatcctgttacgctgtttaaccagGTAGTCTACAAGCTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCACCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCACATGAGGCAGGCTGATAAGgtaaacagcaattgcttgagagtgttgggggggggagctgtttgtgtgag Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgacatctgttcctcatcctgttacgctgtttaaccagGTAGTCTACAAGCTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCACCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCACATGAGGCAGGCTGATAAGgtaaacagcaattgcttgagagtgttgggggggggagctgtttgtgtgag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGG-TGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgacatctgttcctcatcctgttacgctgtttaaccagGTAGTCTACAAGCTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCA-CCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCACATGAGGCAGGCTGATAAGgtaaacagcaattgcttgagagtgttgggggggggagctgtttgtgtgag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgacatctgttcctcatcctgttacgctgtttaaccagGTAGTCTACAAGCTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCACCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCACATGAGGCAGGCTGATAAGgtaaacagcaattgcttgagagtgttgggggggggagctgtttgtgtgag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgacatctgttcctcatcctgttacgctgtttaaccagGTAGTCTACAAGCTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCACCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCACATGAGGCAGGCTGATAAGgtaaacagcaattgcttgagagtgttgggggggggagctgtttgtgtgag Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgacatctgttcctcatcctgttacgctgtttaaccagGTAGTCTACAAGCTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCACCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCACATGAGGCAGGCTGATAAGgtaaacagcaattgcttgagagtgttgggggggggagctgtttgtgtgag #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCA-GTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagatGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTCGTGGGTG-TGATGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagatGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTCGTGGGTGTGATGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTCGTGGGTGTGATGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTCGTGGGTGTGATGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGC-AGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTCGTGGGTG-TGATGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTCGTGGGTGTGATGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTCGTGGGTGTGATGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTCGTGGGTGTGATGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTC-AGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtacccataaggcctccagtttgaaagttgtcccccataccctctgacagctGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTCCAGGG-GCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtaagtttgtgtcactatgctaggagtcaccaatataggttgtcttgccc Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtacccataaggcctccagtttgaaagttgtcccccataccctctgacagctGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTCCAGGGGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtaagtttgtgtcactatgctaggagtcaccaatataggttgtcttgccc Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtacccataaggcctccagtttgaaagttgtcccccataccctctgacagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTCCAGGGGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtaagtttgtgtcactatgctaggagtcaccaatataggttgtcttgccc Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtacccataaggcctccagtttgaaagttgtcccccataccctctgacagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTCCAGGGGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtaagtttgtgtcactatgctaggagtcaccaatataggttgtcttgccc Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtacccataaggcctccagtttgaaagttgtcccccataccctctgacagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTCCAGGGGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtaagtttgtgtcactatgctaggagtcaccaatataggttgtcttgccc Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtacccataaggcctccagtttgaaagttgtcccccataccctctgacagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTCCAGGGGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtaagtttgtgtcactatgctaggagtcaccaatataggttgtcttgccc Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtacccataaggcctccagtttgaaagttgtcccccataccctctgacagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTCCAGGGGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtaagtttgtgtcactatgctaggagtcaccaatataggttgtcttgccc Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gtacccataaggcctccagtttgaaagttgtcccccataccctctgacagCTGATGGCTGGATCCACAAAGCTGTAGTCCTGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTCCAGGGGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtaagtttgtgtcactatgctaggagtcaccaatataggttgtcttgccc #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCA-GAAATCAATTTTGTGGGGCTCCTAATTGGACCCag aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagaCCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCACGAAATCAATT-TGTGGGCCTTCTAATTGGACCCaggtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagaCCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCACGAAATCAATTTGTGGGCCTTCTAATTGGACCCaggtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCACGAAATCAATTTGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCACGAAATCAATTTGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCA-GAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCACGAAATCAA-TTTGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCACGAAATCAATTTGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCACGAAATCAATTTGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCACGAAATCAATTTGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc #### Sf3b2_ID898_20 --> 0 - 0 Original Alignment GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAG-GCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccctatctctaagagtccagaggccttaaattcttgtgcttcagGTTATGAGCCGGAAGGGTGCAGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTATGATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGCGCACAAG-GGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCACGCTGCAAAGCATAAGgtgagtgtgattggtgggtctagaacgagggctatcctctctggtggagg Alignment from CESAR GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATG---GTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccctatctctaagagtccagaggccttaaattcttgtgcttcagGTTATGAGCCGGAAGGGTGCAGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTATGATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGCGCACAAGGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCACGCTGCAAAGCATAAGgtgagtgtgattggtgggtctagaacgagggctatcctctctggtggagg Alignment from Spaln_aa2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccctatctctaagagtccagaggccttaaattcttgtgcttcagGTTATGAGCCGGAAGGGTGCAGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTATGATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGCGCACAAGGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCACGCTGCAAAGCATAAGgtgagtgtgattggtgggtctagaacgagggctatcctctctggtggagg Alignment from Spaln_nt2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAG-GCACAAGTAGAGAAGGAAGACTTCAGCGACATGG---TGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccctatctctaagagtccagaggccttaaattcttgtgcttcagGTTATGAGCCGGAAGGGTGCAGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTATGATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGCGCACAAG-GGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCACGCTGCAAAGCATAAGgtgagtgtgattggtgggtctagaacgagggctatcctctctggtggagg Alignment from Pairagon GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAG-GCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccctatctctaagagtccagaggccttaaattcttgtgcttcagGTTATGAGCCGGAAGGGTGCAGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTATGATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGCGCACAAG-GGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCACGCTGCAAAGCATAAGgtgagtgtgattggtgggtctagaacgagggctatcctctctggtggagg Alignment from Exonerate_protein2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccctatctctaagagtccagaggccttaaattcttgtgcttcagGTTATGAGCCGGAAGGGTGCAGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTATGATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGCGCACAAGGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCACGCTGCAAAGCATAAGgtgagtgtgattggtgggtctagaacgagggctatcctctctggtggagg Alignment from Exonerate_coding2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccctatctctaagagtccagaggccttaaattcttgtgcttcagGTTATGAGCCGGAAGGGTGCAGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTATGATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGCGCACAAGGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCACGCTGCAAAGCATAAGgtgagtgtgattggtgggtctagaacgagggctatcctctctggtggagg Alignment from GeneWise GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATG---GTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccctatctctaagagtccagaggccttaaattcttgtgcttcagGTTATGAGCCGGAAGGGTGCAGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTATGATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGCGCACAAGGGAGAAGGGAGACTTCAGTGATATGATGGTGGCTGAGCACGCTGCAAAGCATAAGgtgagtgtgattggtgggtctagaacgagggctatcctctctggtggagg #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTA-AGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTACAGGA-TTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from CESAR GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTACAGGATTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Spaln_aa2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTACAGGATTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Spaln_nt2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTACAGGATTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Pairagon GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTACAGGATTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTACAGGATTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTACAGGATTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from GeneWise GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTACAGGATTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAG-CGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCCGTCAGA-CCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from CESAR AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCCGTCAGACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from Spaln_aa2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCCGTCAGACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from Spaln_nt2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCCGTCAGACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from Pairagon AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCCGTCAGACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCCGTCAGACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from Exonerate_coding2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCCGTCAGACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from GeneWise AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCCGTCAGACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACA-GATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagagAAGGAAGAAATGGAGACACGTTACTC-CTCATCTCTAGGACAGTCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagagAAGGAAGAAATGGAGACACGTTACTCCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aagcttttacagttaggagagttcaacctgttggctttgttttcca gAGAAGGAAGAAATGGAGACACGTTACTCCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagAGAAGGAAGAAATGGAGACACGTTACTCCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from Pairagon AGGAGGAGGAAATGGAGACA-GATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagAGAAGGAAGAAATGGAGACACGTTACTC-CTCATCTCTAGGACAGTCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagAGAAGGAAGAAATGGAGACACGTTACTCCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from Exonerate_coding2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagAGAAGGAAGAAATGGAGACACGTTACTCCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from GeneWise AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagAGAAGGAAGAAATGGAGACACGTTACTCCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTAGAGCGGCTG-CAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagggAGTCGTGAGGAATTAGTAGAGCGGCTGCCAGA-CTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagggAGTCGTGAGGAATTAGTAGAGCGGCTGCCAGACTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagGGAGTCGTGAGGAATTAGTAGAGCGGCTGCCAGACTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagGGAGTCGTGAGGAATTAGTAGAGCGGCTGCCAGACTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagGGAGTCGTGAGGAATTAGTAGAGCGGCTGCCAGACTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagGGAGTCGTGAGGAATTAGTAGAGCGGCTGCCAGACTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from Exonerate_coding2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagGGAGTCGTGAGGAATTAGTAGAGCGGCTGCCAGACTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from GeneWise TCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagggagTCGTGAGGAATTAGTAGAGCGGCTGCCAGACTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTGGGCATCGCACAAGTG-GTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGCGTCATCT-TCGGATCACAATGGCAGCCCCTGCTGGCATGagtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from CESAR AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGCGTCATCTTCGGATCACAATGGCAGCCCCTGCTGGCATGagtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGCGTCATCTTCGGATCACAATGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTG---GCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGCGTCATCTTCGGATCACAATGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Pairagon AGAGCTGCGGCTGTGGGCATCGCACAAGTG-GTTATCTCTCGGATCACCATGGCAGCCC---CTGGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGCGTCATCT-TCGGATCACAATGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGCGTCATCTTCGGATCACAATGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Exonerate_coding2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGCGTCATCTTCGGATCACAATGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from GeneWise AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGCGTCATCTTCGGATCACAATGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca #### Sfxn2_ID9970_8 --> 2 - 0 Original Alignment tcCTGTTGCCTGTCATCATGGAGAGGCTG-GAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagccCTGTTGCCTGTCATTATGGAGAGACTACGAGAGAC-ACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from CESAR tcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagccCTGTTGCCTGTCATTATGGAGAGACTACGAGAGACACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from Spaln_aa2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTACGAGAGACACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from Spaln_nt2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTG-GAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTACGAGAGAC-ACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from Pairagon TCCTGTTGCCTGTCATCATGGAGAGGCTG-GAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTACGAGAGAC-ACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from Exonerate_protein2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTACGAGAGACACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from Exonerate_coding2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTACGAGAGACACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from GeneWise TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTACGAGAGACACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGTGCCACC-ACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacaggCAGTTGGGGACAGCCTATGTGAGTGCCACCCACTGGAGCTG-GGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacaggCAGTTGGGGACAGCCTATGTGAGTGCCACCCACTGGAGCTGGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTGCCACCCACTGGAGCTGGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTGCCACCCACTGGAGCTGGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGTGCCA-CCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTGCCACCCACTGGAGCTG-GGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTGCCACCCACTGGAGCTGGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTGCCACCCACTGGAGCTGGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG actggacactacctcccctggtgggtcagaactctgtgttttgccaacagGCAGTTGGGGACAGCCTATGTGAGTGCCACCCACTGGAGCTGGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctaccactataagcctctcctgaattctttaccccttgt #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCG-GAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttaggGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCACGAGG-CACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from CESAR gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttaggGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCACGAGGCACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Spaln_aa2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCACGAGGCACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Spaln_nt2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCACGAGGCACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Pairagon GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCACGAGGCACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCACGAGGCACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCACGAGGCACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCACGAGGCACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGC-TCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag acttgggcacagcaaagatcactttttatgggctgatttgcttttcatagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTATGACAATCTGTCTCTC-CTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACaggtaagtactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag acttgggcacagcaaagatcactttttatgggctgatttgcttttcatagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTATGACAATCTGTCTCTCCTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACaggtaagtactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG acttgggcacagcaaagatcactttttatgggctgatttgcttttcatagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTATGACAATCTGTCTCTCCTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagtactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG acttgggcacagcaaagatcactttttatgggctgatttgcttttcatagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTATGACAATCTGTCTCTCCTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagtactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCG-CTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG acttgggcacagcaaagatcactttttatgggctgatttgcttttcatagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTATGACAATCTGTCTCTC-CTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagtactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG acttgggcacagcaaagatcactttttatgggctgatttgcttttcatagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTATGACAATCTGTCTCTCCTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagtactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG acttgggcacagcaaagatcactttttatgggctgatttgcttttcatagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTATGACAATCTGTCTCTCCTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagtactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG acttgggcacagcaaagatcactttttatgggctgatttgcttttcatagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCTGGCAGCAAGCCCTTCTGCCCTATGACAATCTGTCTCTCCTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCTCCCTGCACCCCCCACACCTCATACAGgtaagtactagggtgaacttatgtcatagggtggggtaaactatcatcat #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATC-GGCTCCTCTTGCTCATCTGTGGCTg gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagtgTTTGCCTTTTCTAGTAGTTATGCCTTTCTGTTGATTGCCAAGTCACTGCAGGGAATTCGGCTCATCCT-CTCATCTGTGGCTggtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagtgTTTGCCTTTTCTAGTAGTTATGCCTTTCTGTTGATTGCCAAGTCACTGCAGGGAATTCGGCTCATCCTCTCATCTGTGGCTggtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCTGTTGATTGCCAAGTCACTGCAGGGAATTCGGCTCATCCTCTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAAT-CGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCTGTTGATTGCCAAGTCACTGCAGGGAATTCGGCTCATCCT-CTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from Pairagon TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAA-TCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCTGTTGATTGCCAAGTCACTGCAGGGAATTCGGCTCATCCT-CTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCTGTTGATTGCCAAGTCACTGCAGGGAATTCGGCTCATCCTCTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCTGTTGATTGCCAAGTCACTGCAGGGAATTCGGCTCATCCTCTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatcttggtcctgtagacaagggcaaatttaaaatgtcttcttttcagTGTTTGCCTTTTCTAGTAGTTATGCCTTTCTGTTGATTGCCAAGTCACTGCAGGGAATTCGGCTCATCCTCTCATCTGTGGCTGgtaagtttaaaattatcagtgcatggatagatgagctcaggacttatgtg #### Slc18a2_ID12944_11 --> 1 - 0 Original Alignment gTGGCTGTGTGCTCTTCTGGGA-ATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagaTGGCTGTGTGCTCTTCTGGGACATGATAGTAG-AGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from CESAR gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagaTGGCTGTGTGCTCTTCTGGGACATGATAGTAGAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from Spaln_aa2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGACATGATAGTAGAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from Spaln_nt2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGACATGATAGTAGAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from Pairagon GTGGCTGTGTGCTCTTCTGGGA-ATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGACATGATAGTAG-AGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from Exonerate_protein2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGACATGATAGTAGAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from Exonerate_coding2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGACATGATAGTAGAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from GeneWise GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGACATGATAGTAGAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTG-GGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagggATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGCGGCTGCCTAG-GGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCaggtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagggATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGCGGCTGCCTAGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCaggtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGCGGCTGCCTAGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGCGGCTGCCTAGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTG-GGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGCGGCTGCCT-AGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGCGGCTGCCTAGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGCGGCTGCCTAGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGCGGCTGCCTAGGGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTA-GGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtaggTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTCGGAAGCA-TATATTCCTCCTCCAGTCAATTATTGGGATTGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATggtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtaggTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTCGGAAGCATATATTCCTCCTCCAGTCAATTATTGGGATTGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATggtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTCGGAAGCATATATTCCTCCTCCAGTCAATTATTGGGATTGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTCGGAAGCATATATTCCTCCTCCAGTCAATTATTGGGATTGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCC-TAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTCGGAAGC-ATATATTCCTCCTCCAGTCAATTATTGGGATTGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTCGGAAGCATATATTCCTCCTCCAGTCAATTATTGGGATTGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from Exonerate_coding2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTCGGAAGCATATATTCCTCCTCCAGTCAATTATTGGGATTGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctggtctgtctagagctgtcttcctgccttgtagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCATTGACCTACAAGCCCTTCGGAAGCATATATTCCTCCTCCAGTCAATTATTGGGATTGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCACCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTATGCATCCTTTCCAATATACTGGTGCCCCATGgtaatgtgcctctggcttagggtgagcgtaaggacgcaaaactgtagtgg #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCC-GTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCCGTGTCTGGCA-AGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCcgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCCGTGTCTGGCAAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCcgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCCGTGTCTGGCAAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCCGTGTCTGGCAAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTC-CGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCCGTGTCTGGCA-AGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCCGTGTCTGGCAAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCCGTGTCTGGCAAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCCGTGTCTGGCAAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTG-GGAGCCGCCTTGTTTGGTGGTCTTGCTGACag gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCCGGAG-TGCCTTGTTCGGTTGTCTAGCAGACaggtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCCGGAGTGCCTTGTTCGGTTGTCTAGCAGACaggtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCCGGAGTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCCGGAGTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCCGGAGTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCCGGAGTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCCGGAGTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCCGGAGTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCA-ATATTTGTCTTGCTTATACCCACAag tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCACATTT-TGTCTTACTTATACCCACCaggtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCACATTTTGTCTTACTTATACCCACCaggtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCACATTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCACATTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCACATTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCACATTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG tacggtgctcacaatttcacctgctaagtcaactgttggtttccttacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCACATTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc Alignment from GeneWise -------------------------------------------------ATGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG TACGGTGCTCACAATTTCACCTGCTAAGTCAACTGTTGGTTTCCTTACAGTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAGTATCTGTGCCACATTTTGTCTTACTTATACCCACCAGgtgggcacttttgattgtcctcagtattttaaaattgtgggataaccgtc #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTC-ATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag ttcctaaaattgacaaatttcttgttcagattctgctcctatgcgtgcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCCATGGTGGGAG-GTTACTGGGCGCCATGATGTTTGGTTACCTGGCGGATaggtaagttctggggagccaaagtgctcatttgaagtgagattaggggtacc Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag ttcctaaaattgacaaatttcttgttcagattctgctcctatgcgtgcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCCATGGTGGGAGGTTACTGGGCGCCATGATGTTTGGTTACCTGGCGGATaggtaagttctggggagccaaagtgctcatttgaagtgagattaggggtacc Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ttcctaaaattgacaaatttcttgttcagattctgctcctatgcgtgcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCCATGGTGGGAGGTTACTGGGCGCCATGATGTTTGGTTACCTGGCGGATAGgtaagttctggggagccaaagtgctcatttgaagtgagattaggggtacc Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ttcctaaaattgacaaatttcttgttcagattctgctcctatgcgtgcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCCATGGTGGGAGGTTACTGGGCGCCATGATGTTTGGTTACCTGGCGGATAGgtaagttctggggagccaaagtgctcatttgaagtgagattaggggtacc Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTT-CATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ttcctaaaattgacaaatttcttgttcagattctgctcctatgcgtgcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCCATGGTGGGAG-GTTACTGGGCGCCATGATGTTTGGTTACCTGGCGGATAGgtaagttctggggagccaaagtgctcatttgaagtgagattaggggtacc Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ttcctaaaattgacaaatttcttgttcagattctgctcctatgcgtgcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCCATGGTGGGAGGTTACTGGGCGCCATGATGTTTGGTTACCTGGCGGATAGgtaagttctggggagccaaagtgctcatttgaagtgagattaggggtacc Alignment from Exonerate_coding2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ttcctaaaattgacaaatttcttgttcagattctgctcctatgcgtgcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCCATGGTGGGAGGTTACTGGGCGCCATGATGTTTGGTTACCTGGCGGATAGgtaagttctggggagccaaagtgctcatttgaagtgagattaggggtacc Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG ttcctaaaattgacaaatttcttgttcagattctgctcctatgcgtgcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCCATGGTGGGAGGTTACTGGGCGCCATGATGTTTGGTTACCTGGCGGATAGgtaagttctggggagccaaagtgctcatttgaagtgagattaggggtacc #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAG-CTCTACCCTACAGTCCTCag ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagagATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACACAAGTGAGCCTCT-CCCTACAGTCCTCaggtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagagATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACACAAGTGAGCCTCTCCCTACAGTCCTCaggtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACACAAGTGAGCCTCTCCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACACAAGTGAGCCTCTCCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACACAAGTGAGCCTCTCCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACACAAGTGAGCCTCTCCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACACAAGTGAGCCTCTCCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG ctctggacgagtgaaaatcctgtcccatgtttctctccacgggtcctcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCTTCTACACAAGTGAGCCTCTCCCTACAGTCCTCAGgtccgtggtgcacctgggtcaggggtccatgcacagaactgaattttcaa #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAGACCCAA-AGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAACAGCA-GTATCGGGGCATTGTGGACTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from CESAR GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAACAGCAGTATCGGGGCATTGTGGACTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAACAGCAGTATCGGGGCATTGTGGACTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Spaln_nt2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAACAGCAGTATCGGGGCATTGTGGACTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Pairagon GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAACAGCAGTATCGGGGCATTGTGGACTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAACAGCAGTATCGGGGCATTGTGGACTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Exonerate_coding2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAACAGCAGTATCGGGGCATTGTGGACTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from GeneWise GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAACAGCAGTATCGGGGCATTGTGGACTGTGTAGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAAC-GTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacaggtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACCGTCATGGATT-GTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacaggtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACCGTCATGGATTGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACCGTCATGGATTGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACCGTCATGGATTGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAA-CGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACCGTCATGGATT-GTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACCGTCATGGATTGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACCGTCATGGATTGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gcaggtaggacctggggactgggctgagaatgtgtttgtatcatcaacagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACCGTCATGGATTGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgtggttccctgggccaaacaaatcagaagcagtaactggaagaccaga #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATC-CCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttctttgtttttttaagacgagtccctcgtccttgcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCAGCATCTTTCACATCCCCAAGAC-TGTAAGTCTTAACATGACAGTGAAGgtgagtggatgcagactgctcctcagagtagtcaagtgttgtacagatgg Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttctttgtttttttaagacgagtccctcgtccttgcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCAGCATCTTTCACATCCCCAAGACTGTAAGTCTTAACATGACAGTGAAGgtgagtggatgcagactgctcctcagagtagtcaagtgttgtacagatgg Alignment from Spaln_aa2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttctttgtttttttaagacgagtccctcgtccttgcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCAGCATCTTTCACATCCCCAAGACTGTAAGTCTTAACATGACAGTGAAGgtgagtggatgcagactgctcctcagagtagtcaagtgttgtacagatgg Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttctttgtttttttaagacgagtccctcgtccttgcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCAGCATCTTTCACATCCCCAAGACTGTAAGTCTTAACATGACAGTGAAGgtgagtggatgcagactgctcctcagagtagtcaagtgttgtacagatgg Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttctttgtttttttaagacgagtccctcgtccttgcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCAGCATCTTTCACATCCCCAAGACTGTAAGTCTTAACATGACAGTGAAGgtgagtggatgcagactgctcctcagagtagtcaagtgttgtacagatgg Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttctttgtttttttaagacgagtccctcgtccttgcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCAGCATCTTTCACATCCCCAAGACTGTAAGTCTTAACATGACAGTGAAGgtgagtggatgcagactgctcctcagagtagtcaagtgttgtacagatgg Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttctttgtttttttaagacgagtccctcgtccttgcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCAGCATCTTTCACATCCCCAAGACTGTAAGTCTTAACATGACAGTGAAGgtgagtggatgcagactgctcctcagagtagtcaagtgttgtacagatgg Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gggaatgtaactttctttgtttttttaagacgagtccctcgtccttgcagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCAGCATCTTTCACATCCCCAAGACTGTAAGTCTTAACATGACAGTGAAGgtgagtggatgcagactgctcctcagagtagtcaagtgttgtacagatgg #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTT-GGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTCGGCC-TCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTCGGCCTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTCGGCCTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTCGGCCTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTCGGCCTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTCGGCCTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTCGGCCTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca Alignment from GeneWise GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtgggaagtggcaggtgttctcttatcttgctgtttccagGTGTCACAAGCAGGACTCCTTGCAGACTTTATACCAGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTTACTCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTCGGCCTCAGGGTGCTCTTCCTGGACAAgtaagcactcgcctactgctttacatggaaataatgtatatgttatggca #### Slit1_ID8222_17 --> 1 - 2 Original Alignment aCGACTGAACAACAATGAGATTTCTATCCTAGAG-GCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat ctggatgggggggggagctaggtgtttgtttttactgttgtcttttacagtCGACTAAACAACAATGAGATCTCTATCCTAGAGCGCCACTG-GTTGTTTAGGAAGCTCTCACATCTGAAGAAAatgtgaggttcccacttatcagagggtccctagctagatacaggtaggatgg Alignment from CESAR aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat ctggatgggggggggagctaggtgtttgtttttactgttgtcttttacagtCGACTAAACAACAATGAGATCTCTATCCTAGAGCGCCACTGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAatgtgaggttcccacttatcagagggtccctagctagatacaggtaggatgg Alignment from Spaln_aa2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgtttgtttttactgttgtcttttacagTCGACTAAACAACAATGAGATCTCTATCCTAGAGCGCCACTGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtgaggttcccacttatcagagggtccctagctagatacaggtaggatgg Alignment from Spaln_nt2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgtttgtttttactgttgtcttttacagTCGACTAAACAACAATGAGATCTCTATCCTAGAGCGCCACTGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtgaggttcccacttatcagagggtccctagctagatacaggtaggatgg Alignment from Pairagon ACGACTGAACAACAATGAGATTTCTATCCTAGAG-GCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgtttgtttttactgttgtcttttacagTCGACTAAACAACAATGAGATCTCTATCCTAGAGCGCCACT-GGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtgaggttcccacttatcagagggtccctagctagatacaggtaggatgg Alignment from Exonerate_protein2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgtttgtttttactgttgtcttttacagTCGACTAAACAACAATGAGATCTCTATCCTAGAGCGCCACTGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtgaggttcccacttatcagagggtccctagctagatacaggtaggatgg Alignment from Exonerate_coding2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgtttgtttttactgttgtcttttacagTCGACTAAACAACAATGAGATCTCTATCCTAGAGCGCCACTGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtgaggttcccacttatcagagggtccctagctagatacaggtaggatgg Alignment from GeneWise ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgtttgtttttactgttgtcttttacagTCGACTAAACAACAATGAGATCTCTATCCTAGAGCGCCACTGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtgaggttcccacttatcagagggtccctagctagatacaggtaggatgg #### Slit1_ID8223_16 --> 2 - 2 Original Alignment ggACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCC-TGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGct ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagggACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCCTGCCCACACA-GTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAATCCACAACTGAGctgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from CESAR ggACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGct ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagggACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCCTGCCCACACAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAATCCACAACTGAGctgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from Spaln_aa2Genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCCTGCCCACACAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from Spaln_nt2Genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCCTGCCCACACAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from Pairagon GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGG-CCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCCTGCCCACAC-AGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from Exonerate_protein2genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCCTGCCCACACAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from Exonerate_coding2genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCCTGCCCACACAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from GeneWise AGAGCAGTACTTCATTCCAGGGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttagGCTTGTTCACCACCTTCCAGGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCCTGCCCACACAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAACATC-ACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcaggACACTGAACAACAATAACATCCAGCACCA-TCCTGTGTCGAGTTTCAATCATATTCCTAAGCTTCGTACTttgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from CESAR gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcaggACACTGAACAACAATAACATCCAGCACCATCCTGTGTCGAGTTTCAATCATATTCCTAAGCTTCGTACTttgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcagGACACTGAACAACAATAACATCCAGCACCATCCTGTGTCGAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcagGACACTGAACAACAATAACATCCAGCACCATCCTGTGTCGAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from Pairagon GACCCTGAACAACAACAACAT-CACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcagGACACTGAACAACAATAACATCCAGCACCAT-CCTGTGTCGAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcagGACACTGAACAACAATAACATCCAGCACCATCCTGTGTCGAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from Exonerate_coding2genome ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcaggacactgaacaacaataacatccagcaccatcctgtgtcgagtttcaatcatattcctaagcttcgtactttgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgggctaccaggcaggtgtacatcacattgtgccctttcagGACACTGAACAACAATAACATCCAGCACCATCCTGTGTCGAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatttcaccttggccataagaaaagagtcttgttgcaagttggtttgtc #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCC-AAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTCAAAAAGGATC-GTATTTCCTAGATAAGAAGATGGTCacgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTCAAAAAGGATCGTATTTCCTAGATAAGAAGATGGTCacgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTCAAAAAGGATCGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTCAAAAAGGATCGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGC-CAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTCAAAAAGGATC-GTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTCAAAAAGGATCGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTCAAAAAGGATCGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTCAAAAAGGATCGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGC-GAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGACGAGAGTG-GCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGACGAGAGTGGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGACGAGAGTGGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGACGAGAGTGGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGG-CGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGACGAGAGTG-GCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGACGAGAGTGGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGACGAGAGTGGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGACGAGAGTGGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac #### Snx15_ID1466_6 --> 2 - 1 Original Alignment tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTC-GACCCTTACTCCAAAGAGg atgttttcccccctggggtgaatctcaatcttttttttctgtgatgttagtgGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCACTTTTTCGACC-TTACTCCAAAGAGggtaaagaacaggtgggagtagcagtactaagggctttgaaggacacccac Alignment from CESAR tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg atgttttcccccctggggtgaatctcaatcttttttttctgtgatgttagtgGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCACTTTTTCGACCTTACTCCAAAGAGggtaaagaacaggtgggagtagcagtactaagggctttgaaggacacccac Alignment from Spaln_aa2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctggggtgaatctcaatcttttttttctgtgatgttagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCACTTTTTCGACCTTACTCCAAAGAGGgtaaagaacaggtgggagtagcagtactaagggctttgaaggacacccac Alignment from Spaln_nt2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctggggtgaatctcaatcttttttttctgtgatgttagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCACTTTTTCGACCTTACTCCAAAGAGGgtaaagaacaggtgggagtagcagtactaagggctttgaaggacacccac Alignment from Pairagon TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctggggtgaatctcaatcttttttttctgtgatgttagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCACTTTTTCGACCTTACTCCAAAGAGGgtaaagaacaggtgggagtagcagtactaagggctttgaaggacacccac Alignment from Exonerate_protein2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctggggtgaatctcaatcttttttttctgtgatgttagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCACTTTTTCGACCTTACTCCAAAGAGGgtaaagaacaggtgggagtagcagtactaagggctttgaaggacacccac Alignment from Exonerate_coding2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctggggtgaatctcaatcttttttttctgtgatgttagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCACTTTTTCGACCTTACTCCAAAGAGGgtaaagaacaggtgggagtagcagtactaagggctttgaaggacacccac Alignment from GeneWise TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG atgttttcccccctggggtgaatctcaatcttttttttctgtgatgttagTGGACCCCCTACCATCCAGTCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGCACAGAGGAAGCTTCCGGTACCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCACTTTTTCGACCTTACTCCAAAGAGGgtaaagaacaggtgggagtagcagtactaagggctttgaaggacacccac #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCC-TATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTTCATGGGGACTTGGCCCTATA-TCACCGGAATCTCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCggtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTTCATGGGGACTTGGCCCTATATCACCGGAATCTCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCggtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTTCATGGGGACTTGGCCCTATATCACCGGAATCTCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTTCATGGGGACTTGGCCCTATATCACCGGAATCTCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGG-CCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTTCATGGGGACTTGGCCCTATA-TCACCGGAATCTCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTTCATGGGGACTTGGCCCTATATCACCGGAATCTCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from Exonerate_coding2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagttcaggcttaggtcacgcttgcacttgtctttccagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTTCATGGGGACTTGGCCCTATATCACCGGAATCTCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc Alignment from GeneWise TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG ggtttcttacccagTTCAGGCTTAGGTCACGCTTGCACTTGTCTTTCCAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTTCATGGGGACTTGGCCCTATATCACCGGAATCTCTTCCGGCATCTAGAGGAGTTTCCAGCCTTCCCCCAAGCCCAGGTGTTCGgtaagttttggactctgtacatctccacctcagggcagcaggaatttggc #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGC-CTCTCTGACTCCGCCAAACAAg gcaacatccatgacaaaattgttttgctcaattacatcatttcaaaacagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTATGAGAATGCTAACAAAGCTCTGGACAAAGCTCGGACTAGGAACCGTGAGGTATGGCCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCCTCTCTG-CTCTGCCAAACAAggtgagtcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg gcaacatccatgacaaaattgttttgctcaattacatcatttcaaaacagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTATGAGAATGCTAACAAAGCTCTGGACAAAGCTCGGACTAGGAACCGTGAGGTATGGCCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCCTCTCTGCTCTGCCAAACAAggtgagtcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG gcaacatccatgacaaaattgttttgctcaattacatcatttcaaaacagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTATGAGAATGCTAACAAAGCTCTGGACAAAGCTCGGACTAGGAACCGTGAGGTATGGCCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCCTCTCTGCTCTGCCAAACAAGgtgagtcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGC---GCTTCGAGCGCC-TCTCTGACTCCGCCAAACAAG gcaacatccatgacaaaattgttttgctcaattacatcatttcaaaacagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTATGAGAATGCTAACAAAGCTCTGGACAAAGCTCGGACTAGGAACCGTGAGGTATGGCCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCCTCTCTG-CTCTGCCAAACAAGgtgagtcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCG-CCTCTCTGACTCCGCCAAACAAG gcaacatccatgacaaaattgttttgctcaattacatcatttcaaaacagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTATGAGAATGCTAACAAAGCTCTGGACAAAGCTCGGACTAGGAACCGTGAGGTATGGCCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCCTCTCTG-CTCTGCCAAACAAGgtgagtcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG gcaacatccatgacaaaattgttttgctcaattacatcatttcaaaacagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTATGAGAATGCTAACAAAGCTCTGGACAAAGCTCGGACTAGGAACCGTGAGGTATGGCCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCCTCTCTGCTCTGCCAAACAAGgtgagtcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG gcaacatccatgacaaaattgttttgctcaattacatcatttcaaaacagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTATGAGAATGCTAACAAAGCTCTGGACAAAGCTCGGACTAGGAACCGTGAGGTATGGCCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCCTCTCTGCTCTGCCAAACAAGgtgagtcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG gcaacatccatgacaaaattgttttgctcaattacatcatttcaaaacagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTATGAGAATGCTAACAAAGCTCTGGACAAAGCTCGGACTAGGAACCGTGAGGTATGGCCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCCTCTCTGCTCTGCCAAACAAGgtgagtcctgaaagattgcaacactccacccaacacccattatccatctt #### Snx32_ID1068_10 --> 0 - 0 Original Alignment AAACTGGAAGGCCGGGTA-GCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGGTACGCCT-TGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from CESAR AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGGTACGCCTTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from Spaln_aa2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGGTACGCCTTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from Spaln_nt2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGGTACGCCTTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from Pairagon AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGGTACGCCTTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from Exonerate_protein2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGGTACGCCTTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from Exonerate_coding2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGGTACGCCTTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from GeneWise AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGGTACGCCTTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca #### Snx32_ID1069_9 --> 1 - 0 Original Alignment gAGCTTCCTGAAGCTGGCA-GAGCTCTTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcaggAGCTTCTTGAAGCTGGCACGAAC-CTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from CESAR gAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcaggAGCTTCTTGAAGCTGGCACGAACCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from Spaln_aa2Genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcagGAGCTTCTTGAAGCTGGCACGAACCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from Spaln_nt2Genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcagGAGCTTCTTGAAGCTGGCACGAACCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from Pairagon GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcagGAGCTTCTTGAAGCTGGCACGAACCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from Exonerate_protein2genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcagGAGCTTCTTGAAGCTGGCACGAACCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from Exonerate_coding2genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcagGAGCTTCTTGAAGCTGGCACGAACCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from GeneWise GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcagGAGCTTCTTGAAGCTGGCACGAACCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAG-GAAGTCAACCAACTCAAGag tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttaggcCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGCGAAG-GAACCAACTCAAGaggtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from CESAR gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttaggcCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGCGAAGGAACCAACTCAAGaggtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGCGAAGGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGCGAAGGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Pairagon GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGCGAAGGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGCGAAGGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGCGAAGGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from GeneWise ----------------------------------------------------CTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG TGGTGGCACTGGGTGTGCACATTCATCCGTGCTTCTCTGTCTCCACTTAGGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGCGAAGGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTC-CTCATCACC---GGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGGTATGCGGACGAAATCCCTCA-CACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGGTATGCGGACGAAATCCCTCACACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGGTATGCGGACGAAATCCCTCACACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGG---CATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGGTATGCGGACGAAATCCCTCACACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCAC---CGGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGGTATGCGGACGAAATCCCTCACACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGGTATGCGGACGAAATCCCTCACACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGGTATGCGGACGAAATCCCTCACACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacaccacccagagtacccaagtgtcagccaggttgccttcctgttagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCATTGTAAGGTATGCGGACGAAATCCCTCACACTGGTGGCATATCAGGGCTCAAGgtgagtcttatcctttctgtggcaggagacccatgaacacagcaggcacc #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAG-ATGAAGCAGGAGCTAGAAgc agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGCATGA-ACCAGAGCTAGAAgcgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGCATGAACCAGAGCTAGAAgcgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGCATGAACCAGAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAG-ATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGCATGAACCA-GAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from Pairagon ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAG-ATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGCATGAACCA-GAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGCATGAACCAGAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGCATGAACCAGAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGCATGAACCAGAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCACAACTTTACCACC-AGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagaTACCCCAATGTCAATGTGCATAACTTTACCACCCAGTTGGAGAG-TGGGCTGGCCTTTAATGCCATTGTGCACAAACACcggtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagaTACCCCAATGTCAATGTGCATAACTTTACCACCCAGTTGGAGAGTGGGCTGGCCTTTAATGCCATTGTGCACAAACACcggtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCCAGTTGGAGAGTGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCCAGTTGGAGAGTGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from Pairagon ATACCCCAATGTCAATGTGCACAACTTTACCA-CCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCCAGTTGGAGAG-TGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from Exonerate_protein2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCCAGTTGGAGAGTGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from Exonerate_coding2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCCAGTTGGAGAGTGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCCAGTTGGAGAGTGGGCTGGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCA-GCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCACGCCAGCAGTC-AGATATGATTGACCATGAACATCCAGAGaggtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCACGCCAGCAGTCAGATATGATTGACCATGAACATCCAGAGaggtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCACGCCAGCAGTCAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCACGCCAGCAGTCAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCA-GCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCACGCCAGCAGTC-AGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCACGCCAGCAGTCAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCACGCCAGCAGTCAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCACGCCAGCAGTCAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGC-AGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCCAGAGAGC-AGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from CESAR cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCCAGAGAGCAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Spaln_aa2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCCAGAGAGCAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Spaln_nt2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCCAGAGAGCAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Pairagon CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCG-CAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCCAGAGAGC-AGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Exonerate_protein2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCCAGAGAGCAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Exonerate_coding2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCCAGAGAGCAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from GeneWise CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCCAGAGAGCAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGA-ATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagaGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGACATCAAGGCAG-GATAGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from CESAR gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagaGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGACATCAAGGCAGGATAGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGACATCAAGGCAGGATAGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGACATCAAGGCAGGATAGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from Pairagon GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGA-ATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGACATCAAGGCAG-GATAGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGACATCAAGGCAGGATAGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGACATCAAGGCAGGATAGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from GeneWise GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGACATCAAGGCAGGATAGAGGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTGTCTCAGCTACAGTCC-CGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCCGGCGCC-GGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTggtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from CESAR ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCCGGCGCCGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTggtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCCGGCGCCGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCCGGCGCCGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Pairagon ATCTCAGAGAAGCTGTCTCAGCTACAGT-CCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCCGGCGCC-GGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCCGGCGCCGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCCGGCGCCGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCCGGCGCCGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCC-ATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTCATGGCTA-TCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATgggtaagcattgataccaaatgctaaagccggtaaatgatcctagccctgtt Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTCATGGCTATCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATgggtaagcattgataccaaatgctaaagccggtaaatgatccttgctgcctt Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTCATGGCTATCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctagccctgtt Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTCATGGCTATCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctagccctgtt Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCC-CATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTCATGGCTA-TCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctagccctgtt Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTCATGGCTATCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctagccctgtt Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTCATGGCTATCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctagccctgtt Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG caacttttcaactccccctgcttcctgccagtgctgtggctccaccctagCTGGAAGAACGGGAAAATGAACGGAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTCATGGCTATCAGCCAGAGGGGAGTCTGGTGGACGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaagcattgataccaaatgctaaagccggtaaatgatcctagccctgtt #### Sptbn2_ID636_31 --> 1 - 0 Original Alignment gACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGG-GTCTGCACGGACACCGACTCCTCACAG ccaaatgctaaagccggtaaatgatccttgctgccttccaacccgggcaggACTCAATCAAAATTGCCCCCATCAACACAAGCACCCTGTGTTAATGGGCGTTTGCA-AGGCACTGACTCTTCACAGgtaagagcatcttgacagacatccctttcaactcagccagcatttggatc Alignment from CESAR gACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG ccaaatgctaaagccggtaaatgatccttgctgccttccaacccgggcaggACTCAATCAAAATTGCCCCCATCAACACAAGCACCCTGTGTTAATGGGCGTTTGCAAGGCACTGACTCTTCACAGgtaagagcatcttgacagacatccctttcaactcagccagcatttggatc Alignment from Spaln_aa2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG ccaaatgctaaagccggtaaatgatccttgctgccttccaacccgggcagGACTCAATCAAAATTGCCCCCATCAACACAAGCACCCTGTGTTAATGGGCGTTTGCAAGGCACTGACTCTTCACAGgtaagagcatcttgacagacatccctttcaactcagccagcatttggatc Alignment from Spaln_nt2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGG-GTCTGCACGGACACCGACTCCTCACAG ccaaatgctaaagccggtaaatgatccttgctgccttccaacccgggcagGACTCAATCAAAATTGCCCCCATCAACACAAGCACCCTGTGTTAATGGGCGTTTGCAAGG-CACTGACTCTTCACAGgtaagagcatcttgacagacatccctttcaactcagccagcatttggatc Alignment from Pairagon GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGG-GTCTGCACGGACACCGACTCCTCACAG ccaaatgctaaagccggtaaatgatccttgctgccttccaacccgggcagGACTCAATCAAAATTGCCCCCATCAACACAAGCACCCTGTGTTAATGGGCGTTTGCAAGG-CACTGACTCTTCACAGgtaagagcatcttgacagacatccctttcaactcagccagcatttggatc Alignment from Exonerate_protein2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG ccaaatgctaaagccggtaaatgatccttgctgccttccaacccgggcagGACTCAATCAAAATTGCCCCCATCAACACAAGCACCCTGTGTTAATGGGCGTTTGCAAGGCACTGACTCTTCACAGgtaagagcatcttgacagacatccctttcaactcagccagcatttggatc Alignment from Exonerate_coding2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG ccaaatgctaaagccggtaaatgatccttgctgccttccaacccgggcagGACTCAATCAAAATTGCCCCCATCAACACAAGCACCCTGTGTTAATGGGCGTTTGCAAGGCACTGACTCTTCACAGgtaagagcatcttgacagacatccctttcaactcagccagcatttggatc Alignment from GeneWise GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG ccaaatgctaaagccggtaaatgatccttgctgccttccaacccgggcagGACTCAATCAAAATTGCCCCCATCAACACAAGCACCCTGTGTTAATGGGCGTTTGCAAGGCACTGACTCTTCACAGgtaagagcatcttgacagacatccctttcaactcagccagcatttggatc #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAGCAGAGACTT-GAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTCGAAC-GGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTCGAACGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTCGAACGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTCGAACGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from Pairagon CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTCGAACGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTCGAACGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTCGAACGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTCGAACGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTA-GTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagaGCACAGGGCACTCGTGTACTACGTCCACT-CAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCaggtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagaGCACAGGGCACTCGTGTACTACGTCCACTCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCaggtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTACGTCCACTCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTACGTCCACTCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from Pairagon AGCACAGGGCACTCGGGTGCTA-GTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTACGTCCACT-CAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTACGTCCACTCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTACGTCCACTCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttgggttggaaagacatggaccaccgccccatctaccctgcagAGCACAGGGCACTCGTGTACTACGTCCACTCAAGACAGGTGTCAGCCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACCTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaggtgaaggttgatgttgtgcataatgaggggtggctc #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTG-AACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagaGTAAGTCACATCTTGCAACATGGCCC-GGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagaGTAAGTCACATCTTGCAACATGGCCCGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGCAACATGGCCCGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGCAACATGGCCCGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Pairagon AGTAAGTCACATCTTG-AACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGCAACATGGCCC-GGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGCAACATGGCCCGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGCAACATGGCCCGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGCAACATGGCCCGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac #### Ssh3_ID446_10 --> 0 - 2 Original Alignment CCACCTCTACTTG GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACag ACACCTCTACTTGgtatggtgtcctttactgaattttctttccactgcagGGCTCTGAATGGAATGCTCGCCAACCTAG-GGAACTTCAAAAGAACaggtgtgttttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from CESAR CCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag ACACCTCTACTTGgtgagttgtcctttactgaattttctttccactgcagGGCTCTGAATGGAATGCTCGCCAACCTAGGGAACTTCAAAAGAACaggtgtgttttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Spaln_aa2Genome CCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG ACACCTCTACTTGgtatggtgtcctttactgaattttctttccactgcagGGCTCTGAATGGAATGCTCGCCAACCTAGGGAACTTCAAAAGAACAGgtgtgttttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Spaln_nt2Genome CCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG ACACCTCTACTTGgtatggtgtcctttactgaattttctttccactgcagGGCTCTGAATGGAATGCTCGCCAACCTAGGGAACTTCAAAAGAACAGgtgtgttttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Pairagon CCACCTCTACTTG GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACAG ACACCTCTACTTGgtatggtgtcctttactgaattttctttccactgcagGGCTCTGAATGGAATGCTCGCCAACCTAG-GGAACTTCAAAAGAACAGgtgtgttttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Exonerate_protein2genome CCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG ACACCTCTACTTGgtatggtgtcctttactgaattttctttccactgcagGGCTCTGAATGGAATGCTCGCCAACCTAGGGAACTTCAAAAGAACAGgtgtgttttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAGAG ACACCTCTACTTGgtatggtgtcctttactgaattttctttccactgcagGGCTCTGAATGGAATGCTCGCCAACCTAGGGAACTTCAAAAGAACAGGTgtgttttctggctgtgggtgcctcttttttctcccagcctctctgtgg #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTG-TTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaaggGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGCTTAGATA-TAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaaggGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGCTTAGATATAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGCTTAGATATAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGCTTAGATATAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACC--------AGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTG--------CTTAGATATAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGCTTAGATATAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Exonerate_coding2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGCTTAGATATAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGCTTAGATATAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACT-TACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTCTACTACC-GGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGAcagtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTCTACTACCGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGAcagtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Spaln_aa2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTCTACTACCGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Spaln_nt2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTCTACTACCGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Pairagon GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACT-TACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTCTACTACC-GGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Exonerate_protein2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTCTACTACCGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Exonerate_coding2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTCTACTACCGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTCTACTACCGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGA-CAGTGCAGTGAATTTACCCTCATGGCCag acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACCAGTGCA-TGAACTTACCCTTATGGCTaggtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACCAGTGCATGAACTTACCCTTATGGCTaggtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACCAGTGCATGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGAC-AGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACCAGTGCA-TGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGA-CAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACCAGTGCA-TGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACCAGTGCATGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACCAGTGCATGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACCAGTGCATGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct #### Stx5a_ID2331_3 --> 1 - 1 Original Alignment gCGCATTGGGAAAGATCTCAGCAATACATTT-GCCAAGCTGGAGAAGCTAACAATCt ttgtgttgaaggtcatggcatctgcttcaatgaggcttttaaattaacaggCGCATAGGGAAAGATCTGAGTAATACGTTTCGCCAAAC-GGAGAAGTTAACAATCtgtaaagatttgagaggcctttccaggtgagccttaaaaccttgcacccta Alignment from CESAR gCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt ttgtgttgaaggtcatggcatctgcttcaatgaggcttttaaattaacaggCGCATAGGGAAAGATCTGAGTAATACGTTTCGCCAAACGGAGAAGTTAACAATCtgtaaagatttgagaggcctttccaggtgagccttaaaaccttgcacccta Alignment from Spaln_aa2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ttgtgttgaaggtcatggcatctgcttcaatgaggcttttaaattaacagGCGCATAGGGAAAGATCTGAGTAATACGTTTCGCCAAACGGAGAAGTTAACAATCTgtaaagatttgagaggcctttccaggtgagccttaaaaccttgcacccta Alignment from Spaln_nt2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ttgtgttgaaggtcatggcatctgcttcaatgaggcttttaaattaacagGCGCATAGGGAAAGATCTGAGTAATACGTTTCGCCAAACGGAGAAGTTAACAATCTgtaaagatttgagaggcctttccaggtgagccttaaaaccttgcacccta Alignment from Pairagon GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ttgtgttgaaggtcatggcatctgcttcaatgaggcttttaaattaacagGCGCATAGGGAAAGATCTGAGTAATACGTTTCGCCAAACGGAGAAGTTAACAATCTgtaaagatttgagaggcctttccaggtgagccttaaaaccttgcacccta Alignment from Exonerate_protein2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ttgtgttgaaggtcatggcatctgcttcaatgaggcttttaaattaacagGCGCATAGGGAAAGATCTGAGTAATACGTTTCGCCAAACGGAGAAGTTAACAATCTgtaaagatttgagaggcctttccaggtgagccttaaaaccttgcacccta Alignment from Exonerate_coding2genome GCGCATTGGGAAAGATCTCAGCAAT ttgtgttgaaggtcatggcatctgcttcaatgaggcttttaaattaacaggcgcatagggaaagatctgagtaatacgtttcgccaaacggagaagttaacaatctgtaaagatttgagaggcctttccagGTGAGCCTTAAAACCTTGCACCCTA Alignment from GeneWise GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ttgtgttgaaggtcatggcatctgcttcaatgaggcttttaaattaacagGCGCATAGGGAAAGATCTGAGTAATACGTTTCGCCAAACGGAGAAGTTAACAATCTgtaaagatttgagaggcctttccaggtgagccttaaaaccttgcacccta #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTT-GTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTCGTCCTTGTCT-CCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTCGTCCTTGTCTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTCGTCCTTGTCTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTCGTCCTTGTCTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Pairagon GTCCTGTACATCCAGGCCTTT-GTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTCGTCCTTGTC-TCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTCGTCCTTGTCTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTCGTCCTTGTCTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTCGTCCTTGTCTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGG-GATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGACGACGACTCAA-TCCCCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttt Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGACGACGACTCAATCCCCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggacctct Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGACGACGACTCAATCCCCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttt Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGACGACGACTCAATCCCCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttt Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGG-GATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGACGACGAC-TCAATCCCCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttt Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGACGACGACTCAATCCCCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttt Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGACGACGACTCAATCCCCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttt Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggaaggtgtccgaatgcattttccatgaaaccacctttttccttgacagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGACGACGACTCAATCCCCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttcagattcgctgatgggcatgccagtgtattgtgggggaccttt #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAACATC-TCCTGGCTCTTCCACTGCCGCATCGTCt gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCCTCCTGGC-CTTCCACTGCCGTATTGTCtgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCCTCCTGGCCTTCCACTGCCGTATTGTCtgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCCTCCTGGCCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCCTCCTGGCCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from Pairagon ATGGAACGCAGCCCCAACAT-CTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCCTCCTGGC-CTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCCTCCTGGCCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from Exonerate_coding2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCCTCCTGGCCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from GeneWise ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCCTCCTGGCCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTC-TTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcaggcctgtggagactttgctgatgaatattgttcctacagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCCTTTGTCAGCC-TGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaagtctgacgtagggaaagacttgacctgtgtgtgctatgagtccctc Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcaggcctgtggagactttgctgatgaatattgttcctacagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCCTTTGTCAGCCTGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaagtctgacgtagggaaagacttgacctgtgtgtgctatgagtccctc Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcaggcctgtggagactttgctgatgaatattgttcctacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCCTTTGTCAGCCTGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaagtctgacgtagggaaagacttgacctgtgtgtgctatgagtccctc Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcaggcctgtggagactttgctgatgaatattgttcctacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCCTTTGTCAGCCTGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaagtctgacgtagggaaagacttgacctgtgtgtgctatgagtccctc Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCT-CTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcaggcctgtggagactttgctgatgaatattgttcctacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCCTTTGTCAGCC-TGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaagtctgacgtagggaaagacttgacctgtgtgtgctatgagtccctc Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcaggcctgtggagactttgctgatgaatattgttcctacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCCTTTGTCAGCCTGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaagtctgacgtagggaaagacttgacctgtgtgtgctatgagtccctc Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcaggcctgtggagactttgctgatgaatattgttcctacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCCTTTGTCAGCCTGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaagtctgacgtagggaaagacttgacctgtgtgtgctatgagtccctc Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcaggcctgtggagactttgctgatgaatattgttcctacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCCTTTGTCAGCCTGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtaagtctgacgtagggaaagacttgacctgtgtgtgctatgagtccctc #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCAC-TCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATCTCTGTGG-CCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATCTCTGTGGCCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATCTCTGTGGCCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATCTCTGTGGCCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Pairagon TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCA-CTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATCTCTGTGG-CCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATCTCTGTGGCCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATCTCTGTGGCCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATCTCTGTGGCCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCA-CTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACCTGTTTGCCA-TAAGCCCATGTACCTGGCCATGaggtaactcgggccttgtctttgtcactcccatgttccccttccagcagccc Alignment from CESAR gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACCTGTTTGCCATAAGCCCATGTACCTGGCCATGaggtaactcgggccttgtctttgtcactcccatgttccccttctgcttctgt Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACCTGTTTGCCATAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttccagcagccc Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACCTGTTTGCCATAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttccagcagccc Alignment from Pairagon GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCA-CTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACCTGTTTGCCA-TAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttccagcagccc Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACCTGTTTGCCATAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttccagcagccc Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACCTGTTTGCCATAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttccagcagccc Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctagtgttgtaaaacttcctccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACCTGTTTGCCATAAGCCCATGTACCTGGCCATGAGgtaactcgggccttgtctttgtcactcccatgttccccttccagcagccc #### Syvn1_ID1391_10 --> 1 - 1 Original Alignment cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAG-TCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggattggctaatggggacctactgacctgtgtctcactctctccccagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGCTTACCACCGC-TCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATtgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from CESAR cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggattggctaatggggacctactgacctgtgtctcactctctccccagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGCTTACCACCGCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATtgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from Spaln_aa2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGCTTACCACCGCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from Spaln_nt2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGCTTACCACCGCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from Pairagon CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAG-TCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGCTTACCACC-GCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from Exonerate_protein2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGCTTACCACCGCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from Exonerate_coding2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGCTTACCACCGCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg Alignment from GeneWise CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaatggggacctactgacctgtgtctcactctctccccagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGCTTACCACCGCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtgagtgacatttcatagcgcaggggcagccgcaagaaacttactctagg #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGT-CCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCCTTTC-GCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAggtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from CESAR tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAggtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCCTTTCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGC-TCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcgatcccggaaggccaaggttgggattctctttatctatcgttacaggCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGG-TCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcgatcccggaaggccaaggttgggattctctttatctatcgttacaggCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAG-CTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGG-TCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCCTCCGAGGTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCT-GTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccataggCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTCGTAG-TGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from CESAR gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccataggCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTCGTAGTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Spaln_aa2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTCGTAGTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGAT------ACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTCGTAGTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Pairagon GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGAT------ACTGCCAGGCTCAGGGACCT-GTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTCGTAG-TGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Exonerate_protein2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTCGTAGTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Exonerate_coding2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTCGTAGTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from GeneWise GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTCGTAGTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCAC-CGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCCGACAGTTTC-CTTGCATGAGATGTTTGTGTCGCCTCAGGGACATgggtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from CESAR GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCCGACAGTTTCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATgggtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from Spaln_aa2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCCGACAGTTTCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from Spaln_nt2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCCGACAGTTTCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from Pairagon GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCA-CCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCCGACAGTTTCCT-TGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from Exonerate_protein2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCCGACAGTTTCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from Exonerate_coding2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCCGACAGTTTCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg Alignment from GeneWise GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG atagctcctagctacccagcctcctatacattctcttctgttggagaaagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCCGACAGTTTCCTTGCATGAGATGTTTGTGTCGCCTCAGGGACATGGgtagcctgtcaggagtctacgcaggccataatctccattgttcacagatg #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGC-TGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCCTGCA-CTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCAcgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from CESAR TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCCTGCACTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCAcgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCCTGCACTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from Spaln_nt2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCCTGCACTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from Pairagon TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTG-CCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCCTGCA-CTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCCTGCACTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCCTGCACTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from GeneWise TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCCTGCACTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCC-CCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCCC------A-TATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCCCAT------ATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCCCAT------ATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCC------CCATATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCC------CCATATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCCCAT------ATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCCCAT------ATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCAGCAACTAGTGCTGCCTCTGCCCCCCATATT------CACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTG-GCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGCGCCACAAACC-CCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATgtgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGCGCCACAAACCCCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATgtgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGCGCCACAAACCCCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from Spaln_nt2Genome ATCTGGAGCCTG-GCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGCGCCACAAACC-CCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from Pairagon ATCTGGAGCCTG-GCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGCGCCACAAACC-CCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGCGCCACAAACCCCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGCGCCACAAACCCCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccccaagtgttacatgtccacatattcttttagCTCTGGAGTCTGCGCCACAAACCCCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaacttaagggttgtatgtatgggcagtgttcctagggtgcccagactt #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCCCAG-CACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagtGATGAGTATCTATCCCAGCCACTCCA-GCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagtGATGAGTATCTATCCCAGCCACTCCAGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagTGATGAGTATCTATCCCAGCCACTCCAGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagTGATGAGTATCTATCCCAGCCACTCCAGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from Pairagon ------------------------------------------------AGTGACGAGTATCTGTCCCAG-CACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG CAGGGCACCTGACCAATTGTGTAGCTCATCCTGCTGTCTCTTGCCTTTAGTGATGAGTATCTATCCCAGCCACTCCA-GCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagTGATGAGTATCTATCCCAGCCACTCCAGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagTGATGAGTATCTATCCCAGCCACTCCAGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagTGATGAGTATCTATCCCAGCCACTCCAGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTG-CCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagagcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCCAT-GCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtaagtgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCCATGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagagcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCCATGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagagcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCCATGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagagcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCCATGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagagcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCCATGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagagcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCCATGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtgagagcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCCATGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCC-TACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagtTTTGTGGCAGGTGCAGTGGAGCCCCTACA-GGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagactaacttgatttttctttggtagGGTGAGCCT Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagtTTTGTGGCAGGTGCAGTGGAGCCCCTACAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCT Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagactaacttgatttttctttggtagGGTGAGCCT Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagactaacttgatttttctttggtagGGTGAGCCT Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagactaacttgatttttctttggtagGGTGAGCCT Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagactaacttgatttttctttggtagGGTGAGCCT Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagactaacttgatttttctttggtagGGTGAGCCT Alignment from GeneWise TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT ctgcgaggagagttgagaggaggctgcaagtttccttaactcccgagtagTTTTGTGGCAGGTGCAGTGGAGCCCCTACAGGCGGCAGCCTTGGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGCGAGACTGAAGGGCAGCTTGAGGACCCAGTGACAgtaagtttaaatggaagactaacttgatttttctttggtagGGTGAGCCT #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAAGGA-CCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCCTTTCT-AGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCaagtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCCTTTCTAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCaagtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCCTTTCTAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCCTTTCTAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCCTTTCTAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCCTTTCTAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCCTTTCTAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCCTTTCTAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGT-GGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagccTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCATCGGCAATC-AGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagccTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCATCGGCAATCAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCATCGGCAATCAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCATCGGCAATCAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGT-GGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCATCGGCAATCAG-AGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCATCGGCAATCAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCATCGGCAATCAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cgtaaccctgtggaatttcctccagccctgtgtcccactctcccttacagCCTTCTTGAGGGAAGAAGTGCCATGGGCAGGTCTGACACTCGCCCCACCTGAGGGGACACTACCGGCACCACCTCCACGAGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTTCATCGGCAATCAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCAGCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgtggtcctagccagagcaaaaagcaggtatagggcctcaagatgtaca #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTA-GACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTACGATGTCC-GCACTGTGAGGAACTGGAAAAGACATTTagtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTACGATGTCCGCACTGTGAGGAACTGGAAAAGACATTTagtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTACGATGTCCGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTACGATGTCCGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Pairagon CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTA-GACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTACGATGTCC-GCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTACGATGTCCGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTACGATGTCCGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTACGATGTCCGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGC-TCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCCTCTG-TAAGAGACATGCAGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAaggtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCCTCTGTAAGAGACATGCAGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAaggtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCCTCTGTAAGAGACATGCAGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCCTCTGTAAGAGACATGCAGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from Pairagon ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCCTCTGTAAGAGACATGCAGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCCTCTGTAAGAGACATGCAGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCCTCTGTAAGAGACATGCAGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCCTCTGTAAGAGACATGCAGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg #### Tdrd1_ID12222_23 --> 2 - 0 Original Alignment agATACCACACAGCAGAGAC-TGCTGTTGCACAGAGTTACAGAAACAG gggtctgtctctgccttgacctagtccaaaggtcttgcctgccctgccagagATACCACACAGTAGGGACCTGCTGTTGCA-GGAATTACAGAAACAGgtgagtgtttagtgctgctcaaaccatgtgctgcctcccattgacataga Alignment from CESAR agATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gggtctgtctctgccttgacctagtccaaaggtcttgcctgccctgccagagATACCACACAGTAGGGACCTGCTGTTGCAGGAATTACAGAAACAGgtgagtgtttagtgctgctcaaaccatgtgctgcctcccattgacataga Alignment from Spaln_aa2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gggtctgtctctgccttgacctagtccaaaggtcttgcctgccctgccagAGATACCACACAGTAGGGACCTGCTGTTGCAGGAATTACAGAAACAGgtgagtgtttagtgctgctcaaaccatgtgctgcctcccattgacataga Alignment from Spaln_nt2Genome AGATACCACACAGCAGAGAC-TGCTGTTGCACAGAGTTACAGAAACAG gggtctgtctctgccttgacctagtccaaaggtcttgcctgccctgccagAGATACCACACAGTAGGGACCTGCTGTTGCA-GGAATTACAGAAACAGgtgagtgtttagtgctgctcaaaccatgtgctgcctcccattgacataga Alignment from Pairagon AGATACCACACAGCAGAGA-CTGCTGTTGCACAGAGTTACAGAAACAG gggtctgtctctgccttgacctagtccaaaggtcttgcctgccctgccagAGATACCACACAGTAGGGACCTGCTGTTGCA-GGAATTACAGAAACAGgtgagtgtttagtgctgctcaaaccatgtgctgcctcccattgacataga Alignment from Exonerate_protein2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gggtctgtctctgccttgacctagtccaaaggtcttgcctgccctgccagAGATACCACACAGTAGGGACCTGCTGTTGCAGGAATTACAGAAACAGgtgagtgtttagtgctgctcaaaccatgtgctgcctcccattgacataga Alignment from Exonerate_coding2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gggtctgtctctgccttgacctagtccaaaggtcttgcctgccctgccagAGATACCACACAGTAGGGACCTGCTGTTGCAGGAATTACAGAAACAGgtgagtgtttagtgctgctcaaaccatgtgctgcctcccattgacataga Alignment from GeneWise AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG gggtctgtctctgccttgacctagtccaaaggtcttgcctgccctgccagAGATACCACACAGTAGGGACCTGCTGTTGCAGGAATTACAGAAACAGgtgagtgtttagtgctgctcaaaccatgtgctgcctcccattgacataga #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGG-CTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCCTTGCAGTGG-GATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTggtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCCTTGCAGTGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTggtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCCTTGCAGTGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCCTTGCAGTGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGG-CTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCCTTGCAGT-GGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCCTTGCAGTGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCCTTGCAGTGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCCTTGCAGTGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTCCGAGGGGCCAACTCC-CAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagttATTGGTTATTATATCTTCCGAGGGGCCAACTCCCGAGA-AAACACATTCAGGCAGAATCCTTCCGAGCCCAGTGTGGCTggtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from CESAR ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagttATTGGTTATTATATCTTCCGAGGGGCCAACTCCCGAGAAAACACATTCAGGCAGAATCCTTCCGAGCCCAGTGTGGCTggtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCCCGAGAAAACACATTCAGGCAGAATCCTTCCGAGCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCCCGAGAAAACACATTCAGGCAGAATCCTTCCGAGCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from Pairagon TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCCCGAGAAAACACATTCAGGCAGAATCCTTCCGAGCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCCCGAGAAAACACATTCAGGCAGAATCCTTCCGAGCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCCCGAGAAAACACATTCAGGCAGAATCCTTCCGAGCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta Alignment from GeneWise TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctgcaagcctgtcctttctccccagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCCCGAGAAAACACATTCAGGCAGAATCCTTCCGAGCCCAGTGTGGCTGgtaagttgggtttgtgagaggttatgcctaactgaactcgagggcctgta #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTAT-TTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATCTTGC-GCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATCTTGCGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATCTTGCGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATCTTGCGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATCTTGCGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATCTTGCGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATCTTGCGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATCTTGCGCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCA-GGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCACGGCATCT-GGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACaggcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCACGGCATCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACaggcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCACGGCATCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCACGGCATCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCAT---AGATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCA-GGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCACGGCATC-TGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCAT---AGATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCACGGCATCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCACGGCATCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCC------ ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCACGGCATCTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATAGATTCCCACAGGCAAgtgcccatgagaaatactcgggaaagattatcaacataactcagaa #### Trpt1_ID1983_6 --> 2 - 1 Original Alignment atGGAATCCCTTTCTTCTGCTCCGCCAATGGT-GTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc atagaacgtgactatcatatggtcactctaaaacagattttacctttcagatGGAATTCCT---TTCTGCTTCGCCAATGGGCGTGATTC-GACTCCAGGAAATGCTGAAGGTTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGcgtgagtatataaaccaccctggtctgatgctcacaataagtctggtgtga Alignment from CESAR atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc atagaacgtgactatcatatggtcactctaaaacagattttacctttcagatGGAATTCCT---TTCTGCTTCGCCAATGGGCGTGATTCGACTCCAGGAAATGCTGAAGGTTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGcgtgagtatataaaccaccctggtctgatgctcacaataagtctggtgtga Alignment from Spaln_aa2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcactctaaaacagattttacctttcagATGGAATTCCT---TTCTGCTTCGCCAATGGGCGTGATTCGACTCCAGGAAATGCTGAAGGTTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtgagtatataaaccaccctggtctgatgctcacaataagtctggtgtga Alignment from Spaln_nt2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcactctaaaacagattttacctttcagATGGAATTCCT---TTCTGCTTCGCCAATGGGCGTGATTCGACTCCAGGAAATGCTGAAGGTTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtgagtatataaaccaccctggtctgatgctcacaataagtctggtgtga Alignment from Pairagon ATGGAATCCCTTTCTTCTGCTCCGCCAAT-GGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcactctaaaacagattttacctttcagATGGAATTCCT---TTCTGCTTCGCCAATGGGCGTGATTC-GACTCCAGGAAATGCTGAAGGTTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtgagtatataaaccaccctggtctgatgctcacaataagtctggtgtga Alignment from Exonerate_protein2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcactctaaaacagattttacctttcagATGGAATTCCT---TTCTGCTTCGCCAATGGGCGTGATTCGACTCCAGGAAATGCTGAAGGTTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtgagtatataaaccaccctggtctgatgctcacaataagtctggtgtga Alignment from Exonerate_coding2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcactctaaaacagattttacctttcagATGGAATTCCT---TTCTGCTTCGCCAATGGGCGTGATTCGACTCCAGGAAATGCTGAAGGTTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtgagtatataaaccaccctggtctgatgctcacaataagtctggtgtga Alignment from GeneWise ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaacgtgactatcatatggtcactctaaaacagattttacctttcagATGGAATTCCTTTC---TGCTTCGCCAATGGGCGTGATTCGACTCCAGGAAATGCTGAAGGTTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTCCAGCTTCGACCTACGCgtgagtatataaaccaccctggtctgatgctcacaataagtctggtgtga #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTC-TCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgcagACCAACGCCCGACTAACTGGAAATCGGCGCTTCCTCCCAGG-TTTGTCGGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgcagACCAACGCCCGACTAACTGGAAATCGGCGCTTCCTCCCAGGTTTGTCGGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from Spaln_aa2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGAAATCGGCGCTTCCTCCCAGGTTTGTCGGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from Spaln_nt2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGAAATCGGCGCTTCCTCCCAGGTTTGTCGGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTC-TCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGAAATCGGCGCTTCCTCCCAGGT-TTGTCGGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGAAATCGGCGCTTCCTCCCAGGTTTGTCGGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGAAATCGGCGCTTCCTCCCAGGTTTGTCGGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctagggaagagtaggaaccactctgcccctcttgttgCAGACCAACGCCCGACTAACTGGAAATCGGCGCTTCCTCCCAGGTTTGTCGGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgcccgggacaaggttatctggtcttccctatgtcacacatgtgtattg #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCCCTCACAGGGAACCAG-GGCATCGAGGCTGCGATGGATtg tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacaggGAGAAGGCTCTTGCCCTCACAGGGAACCATCGGCATCG-GGCTGCGATGGCTtggtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from CESAR gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacaggGAGAAGGCTCTTGCCCTCACAGGGAACCATCGGCATCGGGCTGCGATGGCTtggtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Spaln_aa2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATCGGCATCGGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAG-GGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATCGGCATCG-GGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Pairagon GGAGAAGGCTCTGGCCCTCACAGGGAACCA-GGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATCGGCATCG-GGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATCGGCATCGGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Exonerate_coding2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATCGGCATCGGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from GeneWise - tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagggagaaggctcttgccctcacagggaaccatcggcatcgggctgcgatggcttggtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagG #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCC-CTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg gccgatgcacaaggtgggctccagaatacctcttcctcttcttttttcaggCTGATGGAGCATGAAGACGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCC-TGTCTTGGGACGAGAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAggtaggcattgggaaacatcttggttttgcaaccttaaaagggccctgaca Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg gccgatgcacaaggtgggctccagaatacctcttcctcttcttttttcaggCTGATGGAGCATGAAGACGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCTGTCTTGGGACGAGAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAggtaggcattgggaaacatcttggttttgcaaccttaaaagggccctgaca Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccgatgcacaaggtgggctccagaatacctcttcctcttcttttttcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCTGTCTTGGGACGAGAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaggcattgggaaacatcttggttttgcaaccttaaaagggccctgaca Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccgatgcacaaggtgggctccagaatacctcttcctcttcttttttcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCTGTCTTGGGACGAGAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaggcattgggaaacatcttggttttgcaaccttaaaagggccctgaca Alignment from Pairagon GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGAC-TCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccgatgcacaaggtgggctccagaatacctcttcctcttcttttttcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCC-TGTCTTGGGACGAGAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaggcattgggaaacatcttggttttgcaaccttaaaagggccctgaca Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccgatgcacaaggtgggctccagaatacctcttcctcttcttttttcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCTGTCTTGGGACGAGAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaggcattgggaaacatcttggttttgcaaccttaaaagggccctgaca Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccgatgcacaaggtgggctccagaatacctcttcctcttcttttttcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCTGTCTTGGGACGAGAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaggcattgggaaacatcttggttttgcaaccttaaaagggccctgaca Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccgatgcacaaggtgggctccagaatacctcttcctcttcttttttcagGCTGATGGAGCATGAAGACGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCCTCAGCCTGTCTTGGGACGAGAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaggcattgggaaacatcttggttttgcaaccttaaaagggccctgaca #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAAC-CCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg gatctaatgggatataggaagaactgagcctgattttcctttgtatccagatATCGATGAATGCCAAAACCCCAGGGA-CTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAggtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg gatctaatgggatataggaagaactgagcctgattttcctttgtatccagatATCGATGAATGCCAAAACCCCAGGGACTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAggtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAA gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCCAGGGACTGCAGTCAGatctgtatcaacttaaaaggcggttacaagtgtgaatgtagtcatggctatcaaatggaactggccactggcgtgtgcaaggcaataggtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCA gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCCAGGGACTGCAgtcagatctgtatcaacttaaaaggcggttacaagtgtgaatgtagtcatggctatcaaatggaactggccactggcgtgtgcaaggcaataggtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCCAGGGACTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCCAGGGACTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCCAGGGACTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCCAGGGACTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa #### Vps13a_ID4058_65 --> 2 - 0 Original Alignment gtGGGCTAGCTGGTGCTGCCTCCAAA-ATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctaggtGGGCTAGCTGGTGCTGCCTCCAAACATCACCA-TGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from CESAR gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctaggtGGGCTAGCTGGTGCTGCCTCCAAACATCACCATGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Spaln_aa2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAACATCACCATGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Spaln_nt2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAACATCACCATGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Pairagon GTGGGCTAGCTGGTGCTGCCTCCAAA-ATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAACATCACCA-TGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Exonerate_protein2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAACATCACCATGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Exonerate_coding2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAACATCACCATGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from GeneWise GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAACATCACCATGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAG-GGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGCGGAATGG-GTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGCGGAATGGGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGCGGAATGGGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGCGGAATGGGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAG-GGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGCGGAATGG-GTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGCGGAATGGGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGCGGAATGGGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGCGGAATGGGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc #### Vps13a_ID4111_12 --> 0 - 2 Original Alignment TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAG-CCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg gctgaacacaaactcataaagatgtaagttccatctgaaatgtttttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATCGATATGATGACACAGAACCAGCCCATACAGGA-ATTTGAGCCCAGTGTGCCCCTTCACCTCCATGCCAAGGAGtggtgagtactttggttgttgggaggtgtaagcaattatgcattattttcta Alignment from CESAR TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg gctgaacacaaactcataaagatgtaagttccatctgaaatgtttttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATCGATATGATGACACAGAACCAGCCCATACAGGAATTTGAGCCCAGTGTGCCCCTTCACCTCCATGCCAAGGAGtggtgagtactttggttgttgggaggtgtaagcaattatgcattattttcta Alignment from Spaln_aa2Genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaaactcataaagatgtaagttccatctgaaatgtttttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATCGATATGATGACACAGAACCAGCCCATACAGGAATTTGAGCCCAGTGTGCCCCTTCACCTCCATGCCAAGGAGTGgtgagtactttggttgttgggaggtgtaagcaattatgcattattttcta Alignment from Spaln_nt2Genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaaactcataaagatgtaagttccatctgaaatgtttttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATCGATATGATGACACAGAACCAGCCCATACAGGAATTTGAGCCCAGTGTGCCCCTTCACCTCCATGCCAAGGAGTGgtgagtactttggttgttgggaggtgtaagcaattatgcattattttcta Alignment from Pairagon TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAG-CCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaaactcataaagatgtaagttccatctgaaatgtttttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATCGATATGATGACACAGAACCAGCCCATACAGGAA-TTTGAGCCCAGTGTGCCCCTTCACCTCCATGCCAAGGAGTGgtgagtactttggttgttgggaggtgtaagcaattatgcattattttcta Alignment from Exonerate_protein2genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaaactcataaagatgtaagttccatctgaaatgtttttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATCGATATGATGACACAGAACCAGCCCATACAGGAATTTGAGCCCAGTGTGCCCCTTCACCTCCATGCCAAGGAGTGgtgagtactttggttgttgggaggtgtaagcaattatgcattattttcta Alignment from Exonerate_coding2genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaaactcataaagatgtaagttccatctgaaatgtttttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATCGATATGATGACACAGAACCAGCCCATACAGGAATTTGAGCCCAGTGTGCCCCTTCACCTCCATGCCAAGGAGTGgtgagtactttggttgttgggaggtgtaagcaattatgcattattttcta Alignment from GeneWise TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaaactcataaagatgtaagttccatctgaaatgtttttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATCGATATGATGACACAGAACCAGCCCATACAGGAATTTGAGCCCAGTGTGCCCCTTCACCTCCATGCCAAGGAGTGgtgagtactttggttgttgggaggtgtaagcaattatgcattattttcta #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGGAAA-AACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccaggtAGCCTTAAACTTAAAATCCCATGGAAACAACCTTT-TACTCAACCAGTTGGAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTagtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccaggtAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTTACTCAACCAGTTGGAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTagtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTTACTCAACCAGTTGGAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTTACTCAACCAGTTGGAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTTACTCAACCAGTTGGAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTTACTCAACCAGTTGGAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccagGTAGCCTTAAACTTAAAATCCCATGGAAACAACCTTTTACTCAACCAGTTGGAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg Alignment from GeneWise TCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaaactcagaaaatattttggcctttaccgtcatcccaggtagCCTTAAACTTAAAATCCCATGGAAACAACCTTTTACTCAACCAGTTGGAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatatagcttatttccagatttaaaaattg #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGGCAG-CTGGCAGAAATTGATTTTCGGCAAg aaatgggatccagaaatcacactgatccttcctgtccctttgaccaccagtTCTGTCATCGTAGGGAACACTCATGGGCAACCTGGCAG-AATTGATTTTCGGCAAggtatttagaccatggatttcttgagaagggaagcaaatgaggggtcacta Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg aaatgggatccagaaatcacactgatccttcctgtccctttgaccaccagtTCTGTCATCGTAGGGAACACTCATGGGCAACCTGGCAGAATTGATTTTCGGCAAggtatttagaccatggatttcttgagaagggaagcaaatgaggggtcacta Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccagaaatcacactgatccttcctgtccctttgaccaccagTTCTGTCATCGTAGGGAACACTCATGGGCAACCTGGCAGAATTGATTTTCGGCAAGgtatttagaccatggatttcttgagaagggaagcaaatgaggggtcacta Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccagaaatcacactgatccttcctgtccctttgaccaccagTTCTGTCATCGTAGGGAACACTCATGGGCAACCTGGCAGAATTGATTTTCGGCAAGgtatttagaccatggatttcttgagaagggaagcaaatgaggggtcacta Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGGCAG-CTGGCAGAAATTGATTTTCGGCAAG aaatgggatccagaaatcacactgatccttcctgtccctttgaccaccagTTCTGTCATCGTAGGGAACACTCATGGGCAACCTGGCAG-AATTGATTTTCGGCAAGgtatttagaccatggatttcttgagaagggaagcaaatgaggggtcacta Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccagaaatcacactgatccttcctgtccctttgaccaccagTTCTGTCATCGTAGGGAACACTCATGGGCAACCTGGCAGAATTGATTTTCGGCAAGgtatttagaccatggatttcttgagaagggaagcaaatgaggggtcacta Alignment from Exonerate_coding2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccagaaatcacactgatccttcctgtccctttgaccaccagTTCTGTCATCGTAGGGAACACTCATGGGCAACCTGGCAGAATTGATTTTCGGCAAGgtatttagaccatggatttcttgagaagggaagcaaatgaggggtcacta Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccagaaatcacactgatccttcctgtccctttgaccaccagTTCTGTCATCGTAGGGAACACTCATGGGCAACCTGGCAGAATTGATTTTCGGCAAGgtatttagaccatggatttcttgagaagggaagcaaatgaggggtcacta #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTG-GACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctataggtAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAGTCT-GAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctataggtAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAGTCTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAGTCTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAGTCTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTG-GACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAGTC-TGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAGTCTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAGTCTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from GeneWise TCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctataggtagACTAGTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAGTCTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTC-GATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaaggcagtcatcagggttcttattcctgctgctttgtgctttttctaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTCGATG-CACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaaaacctgaacccctgggaagggggaggtaggtttgtagccaggattt Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaaggcagtcatcagggttcttattcctgctgctttgtgctttttctaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTCGATGCACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaaaacctgaacccctgggaagggggaggtaggtttgtagccaggattt Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaaggcagtcatcagggttcttattcctgctgctttgtgctttttctagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTCGATGCACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaaaacctgaacccctgggaagggggaggtaggtttgtagccaggattt Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaaggcagtcatcagggttcttattcctgctgctttgtgctttttctagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTCGATGCACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaaaacctgaacccctgggaagggggaggtaggtttgtagccaggattt Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTC-TTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaaggcagtcatcagggttcttattcctgctgctttgtgctttttctagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTCGATG-CACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaaaacctgaacccctgggaagggggaggtaggtttgtagccaggattt Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaaggcagtcatcagggttcttattcctgctgctttgtgctttttctagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTCGATGCACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaaaacctgaacccctgggaagggggaggtaggtttgtagccaggattt Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaaggcagtcatcagggttcttattcctgctgctttgtgctttttctagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTCGATGCACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaaaacctgaacccctgggaagggggaggtaggtttgtagccaggattt Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCAC---GGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG aaaaggcagtcatcagggtTCTTATTCCTGCTGCTTTGTGCTTTTTCTAGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTCGATGCACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAATAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaaaacctgaacccctgggaagggggaggtaggtttgtagccaggattt #### Yif1a_ID831_3 --> 0 - 0 Original Alignment CTGCACCGTTTTGTGTCCGTGAACAAACTC-AAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACTCCAAGTATTTCT-TGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from CESAR CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACTCCAAGTATTTCTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from Spaln_aa2Genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACTCCAAGTATTTCTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from Spaln_nt2Genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACTCCAAGTATTTCTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from Pairagon CTGCACCGTTTTGTGTCCGTGAACAAACT-CAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACTCCAAGTA-TTTCTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from Exonerate_protein2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACTCCAAGTATTTCTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from Exonerate_coding2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACTCCAAGTATTTCTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat Alignment from GeneWise CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG gacataggatccaatcttacaggagggaatttcttatccattctccttagTTGCACCGTTTTGTGTCCGTGAATAAACTCCAAGTATTTCTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaatgtcattcagagtgctggccccctacttgtgaataacctgactgat #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCT-GCTGGCAGCACATCTGAAAAATCAag ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttaggaACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTCGCTGGCA-TACATCTGAAAAATCAaggtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttaggaACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTCGCTGGCATACATCTGAAAAATCAaggtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTCGCTGGCATACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTCGCTGGCATACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCT-GCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTCGCTGGCA-TACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTCGCTGGCATACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTCGCTGGCATACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTCGCTGGCATACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACAT-CAGTCTCCCGGTGGCATTag gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagatGTTCCAGAAGAACATCCAAT-CCCTGGTGGCATTaggtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from CESAR atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagatGTTCCAGAAGAACATCCAATCCCTGGTGGCATTaggtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagATGTTCCAGAAGAACATCCAATCCCTGGTGGCATTAGgtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagATGTTCCAGAAGAACATCCAATCCCTGGTGGCATTAGgtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from Pairagon ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagATGTTCCAGAAGAACATCCAATCCCTGGTGGCATTAGgtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from Exonerate_protein2genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagATGTTCCAGAAGAACATCCAATCCCTGGTGGCATTAGgtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from Exonerate_coding2genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagATGTTCCAGAAGAACATCCAATCCCTGGTGGCATTAGgtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from GeneWise gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagatgttccagaagaacatccaatccctggtggcattaggtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCG-CGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACCGTT-TTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAggtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACCGTTTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAggtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACCGTTTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACCGTTTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACCGTTTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACCGTTTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACCGTTTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACCGTTTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTT-GTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctgacctatgcccactgctccttctctccccagatAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTCGTAA-ACTGCTTCGGAAACCAGTCTATGTGCAGGTGCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATgggtaaaagataagagaagactgtgctgcattcagggtcaaaaggactttct Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctgacctatgcccactgctccttctctccccagatAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTCGTAAACTGCTTCGGAAACCAGTCTATGTGCAGGTGCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATgggtaaaagataagagaagactgtgctgcattcagggtcaaaaggactttct Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgacctatgcccactgctccttctctccccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTCGTAAACTGCTTCGGAAACCAGTCTATGTGCAGGTGCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaaaagataagagaagactgtgctgcattcagggtcaaaaggactttct Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgacctatgcccactgctccttctctccccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTCGTAAACTGCTTCGGAAACCAGTCTATGTGCAGGTGCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaaaagataagagaagactgtgctgcattcagggtcaaaaggactttct Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgacctatgcccactgctccttctctccccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTCGTAAACTGCTTCGGAAACCAGTCTATGTGCAGGTGCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaaaagataagagaagactgtgctgcattcagggtcaaaaggactttct Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgacctatgcccactgctccttctctccccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTCGTAAACTGCTTCGGAAACCAGTCTATGTGCAGGTGCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaaaagataagagaagactgtgctgcattcagggtcaaaaggactttct Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgacctatgcccactgctccttctctccccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTCGTAAACTGCTTCGGAAACCAGTCTATGTGCAGGTGCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaaaagataagagaagactgtgctgcattcagggtcaaaaggactttct Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgacctatgcccactgctccttctctccccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTCGTAAACTGCTTCGGAAACCAGTCTATGTGCAGGTGCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaaaagataagagaagactgtgctgcattcagggtcaaaaggactttct #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTC-ATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCCATACAAGCTG-CTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAggtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCCATACAAGCTGCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAggtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCCATACAAGCTGCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTC-ATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCCATACAAGCTG-CTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCA------TCTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTT-CATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCCATACAAGCTG-CTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCA------TCTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCCATACAAGCTGCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCCATACAAGCTGCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCCATACAAGCTGCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg ####