#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTG-GACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGCGACCTGG-CCTTAAGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGCGACCTGGCCTTAAGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGCGACCTGGCCTTAAGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGCGACCTGGCCTTAAGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTG-GACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGCGACCTGG-CCTTAAGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGCGACCTGGCCTTAAGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGCGACCTGGCCTTAAGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGCGACCTGGCCTTAAGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc #### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGC-ACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCCACAGCCT-CATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAggtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCCACAGCCTCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAggtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCCACAGCCTCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Spaln_nt2Genome CTCACCAAGCTGAGC-ACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCCACAGC-CTCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Pairagon CTCACCAAGCTGAG-CACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCCACAGC-CTCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCCACAGCCTCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCCACAGCCTCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCCACAGCCTCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTG-CTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacaggaAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCAC-TCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacaggaAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCCACTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat #### 1700055N04Rik_ID228_6 --> 0 - 1 Original Alignment AGCTGCTTTGCT-GTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTCGTGATGC-GGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAggtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from CESAR AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTCGTGATGCGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAggtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTCGTGATGCGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGgtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTCGTGATGCGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGgtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from Pairagon AGCTGCTTTGCT-GTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTCGTGATG-CGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGgtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTCGTGATGCGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGgtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTCGTGATGCGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGgtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from GeneWise AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGAAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTCGTGATGCGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGGTGAgtagggccctgttgagaaccatcaatagagtgatataatataatat #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGC-AGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTCAAGGATT-GCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGgcgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTCAAGGATTGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGgcgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTCAAGGATTGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTCAAGGATTGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAG-CAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTCAAGGATTGCAGA-GGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTCAAGGATTGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTCAAGGATTGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTCAAGGATTGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACA-AAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGAAC-TGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGAACTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGAACTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGAACTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACA-AAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGAAC-TGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGAACTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGAACTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACACAAAGGAGAACTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAG-AGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagttACCCCAGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCA-GCATATGACCAAAATCTTGGACCCTGACCCAggtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagttACCCCAGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAggtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAG-AGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCA-GCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg Alignment from GeneWise TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatctgccaagtcattattttgattattcttagTTACCCCAGTCATAGAGCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGCAGAAGCAGCATATGACCAAAATCTTGGACCCTGACCCAGgtagagtgaattgggggtgacatgtctgaataactcaagcataaagtctg #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTT-CCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagaaTCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAAGACAACCCATCTCTTCCCCA-TAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGagtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagaaTCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAAGACAACCCATCTCTTCCCCATAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGagtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAAGACAACCCATCTCTTCCCCATAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAAGACAACCCATCTCTTCCCCATAGGCTCCGACCCAGAGGACTCCGCCC---TGAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAAGACAACCCATCTCTTCCCCATAGGCTCCGACCCAGAGGACTCCGCCC---TGAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAAGACAACCCATCTCTTCCCCATAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAAGACAACCCATCTCTTCCCCATAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccaagcgactccctgcctgtggttacagAATCAGGCCAGGATGGTCGGCCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTCAAGACAACCCATCTCTTCCCCATAGGCTCCGACCCAGAGGACTCCGCCCT---GAACTGCCGAgtaagccaccaagaatccttgggtttggtaggacatcctatagtaaggga #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGAC-ATGAACTACTTTTCAGTAAACAACGAAGGCGAG atataaatgtgcttgctctagggttgccctgtcctccttcttcccaacaggtCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAACTTGAAGATGTGGCAGACCATGAACTACT-TTCAGTAAACAATAAAGGTGAGgtaagggggtgtgatacagcacctatctaatgggcatggagaaactttcc Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGAC-ATGAACTACTTTTCAGTAAACAACGAAGGCGAG atataaatgtgcttgctctagggttgccctgtcctccttcttcccaacaggtCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAACTTGAAGATGTGGCAGACCATGAACTACT-TTCAGTAAACAATAAAGGTGAGgtaagggggtgtgatacagcacctatctaatgggcatggagaaactttcc Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atataaatgtgcttgctctagggttgccctgtcctccttcttcccaacagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAACTTGAAGATGTGGCAGACCATGAACTACTTTCAGTAAACAATAAAGGTGAGgtaagggggtgtgatacagcacctatctaatgggcatggagaaactttcc Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGAC-ATGAACTACTTTTCAGTAAACAACGAAGGCGAG atataaatgtgcttgctctagggttgccctgtcctccttcttcccaacagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAACTTGAAGATGTGGCAGACCATGAACTAC-TTTCAGTAAACAATAAAGGTGAGgtaagggggtgtgatacagcacctatctaatgggcatggagaaactttcc Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGA-CATGAACTACTTTTCAGTAAACAACGAAGGCGAG atataaatgtgcttgctctagggttgccctgtcctccttcttcccaacagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAACTTGAAGATGTGGCAGACCATGAACTAC-TTTCAGTAAACAATAAAGGTGAGgtaagggggtgtgatacagcacctatctaatgggcatggagaaactttcc Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atataaatgtgcttgctctagggttgccctgtcctccttcttcccaacagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAACTTGAAGATGTGGCAGACCATGAACTACTTTCAGTAAACAATAAAGGTGAGgtaagggggtgtgatacagcacctatctaatgggcatggagaaactttcc Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atataaatgtgcttgctctagggttgccctgtcctccttcttcccaacagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAACTTGAAGATGTGGCAGACCATGAACTACTTTCAGTAAACAATAAAGGTGAGgtaagggggtgtgatacagcacctatctaatgggcatggagaaactttcc Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atataaatgtgcttgctctagggttgccctgtcctccttcttcccaacagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAACTTGAAGATGTGGCAGACCATGAACTACTTTCAGTAAACAATAAAGGTGAGgtaagggggtgtgatacagcacctatctaatgggcatggagaaactttcc #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCCATTTTAGAA-GACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCATTTTAGAGCGACTTGC-GAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from CESAR TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCATTTTAGAGCGACTTGCGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCATTTTAGAGCGACTTGCGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCATTTTAGAGCGACTTGCGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from Pairagon TGTGTAAAGGAAGCCATTTTAGAA-GACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCATTTTAGAGCGACTTGC-GAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCATTTTAGAGCGACTTGCGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from Exonerate_coding2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCATTTTAGAGCGACTTGCGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG ttcaggcatcttaggccttttagttacgtgctcttatctgtttcctacagTGTGTAAAAGAAGCCATTTTAGAGCGACTTGCGAAAATTGGGAAGGAGGGTGGCTTGAAATCCCTTGAGCAGgtactgatttgggatgccttttgccattctggttcttcaaggtctagcta #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTC-ATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCCATCTCCA-GGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from CESAR AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagcggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCCATCTCCAGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Spaln_aa2Genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCCATCTCCAGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Spaln_nt2Genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTC-ATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCCATCTCCA-GGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Pairagon AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCT-CATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCCATCTCCA-GGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Exonerate_protein2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCCATCTCCAGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Exonerate_coding2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCCATCTCCAGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from GeneWise AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCCATCTCCAGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt #### Actn3_ID692_18 --> 0 - 0 Original Alignment CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATT-GCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG agtcaagtactaggttaaggtctatatgccctcttttgtctataaaccagCACATTCGTGTGGGCTGGGAGCAATTACTTACCTCCATTCGCCCGCA-CATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaagcggagacttcacctgatagacattaacttttgtcccctctcctgc Alignment from CESAR CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG agtcaagtactaggttaaggtctatatgccctcttttgtctataaaccagCACATTCGTGTGGGCTGGGAGCAATTACTTACCTCCATTCGCCCGCACATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaagcggagacttcacctgatagacattactgcctccctccctctccac Alignment from Spaln_aa2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG agtcaagtactaggttaaggtctatatgccctcttttgtctataaaccagCACATTCGTGTGGGCTGGGAGCAATTACTTACCTCCATTCGCCCGCACATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaagcggagacttcacctgatagacattaacttttgtcccctctcctgc Alignment from Spaln_nt2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG agtcaagtactaggttaaggtctatatgccctcttttgtctataaaccagCACATTCGTGTGGGCTGGGAGCAATTACTTACCTCCATTCGCCCGCACATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaagcggagacttcacctgatagacattaacttttgtcccctctcctgc Alignment from Pairagon CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATT-GCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG agtcaagtactaggttaaggtctatatgccctcttttgtctataaaccagCACATTCGTGTGGGCTGGGAGCAATTACTTACCTCCATTCGCCCGCA-CATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaagcggagacttcacctgatagacattaacttttgtcccctctcctgc Alignment from Exonerate_protein2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG agtcaagtactaggttaaggtctatatgccctcttttgtctataaaccagCACATTCGTGTGGGCTGGGAGCAATTACTTACCTCCATTCGCCCGCACATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaagcggagacttcacctgatagacattaacttttgtcccctctcctgc Alignment from Exonerate_coding2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG agtcaagtactaggttaaggtctatatgccctcttttgtctataaaccagCACATTCGTGTGGGCTGGGAGCAATTACTTACCTCCATTCGCCCGCACATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaagcggagacttcacctgatagacattaacttttgtcccctctcctgc Alignment from GeneWise CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG agtcaagtactaggttaaggtctatatgccctcttttgtctataaaccagCACATTCGTGTGGGCTGGGAGCAATTACTTACCTCCATTCGCCCGCACATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaagcggagacttcacctgatagacattaacttttgtcccctctcctgc #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAG-GAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGCGAGCAGA-GGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGCGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGCGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGCGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAG-GAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGCGAGCAGA-GGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGCGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGCGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggttaagagagcttaagcagagtctctctccttccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGCGAGCAGAGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaaggtctcacccataggaaaaagcgaagtgaagaggaagtactggctc #### Actn3_ID697_13 --> 1 - 0 Original Alignment tGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACA-CTGACCCAGAAGAGGAGGGACGCACTAGAG cttaactctgccacataccttgggtctaccactgttcattttcttctcagtGAGCTTGACTACCATGAGGCGACTTCTGTGAACAGCCGGTGCCAAGCTATCTGTGACCAGTGGGATAACCTGGGTACACCTGACCCAGA-GAGGAGAGATGCATTAGAGgtaagtggtagggccgcaaggagataagaccagcagtctgagaagaatct Alignment from CESAR tGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cttaactctgccacataccttgggtctaccactgttcattttcttctcagtGAGCTTGACTACCATGAGGCGACTTCTGTGAACAGCCGGTGCCAAGCTATCTGTGACCAGTGGGATAACCTGGGTACACCTGACCCAGAGAGGAGAGATGCATTAGAGgtaagtggtagggccgcaaggagataagaccagcagtctgagaagaatct Alignment from Spaln_aa2Genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cttaactctgccacataccttgggtctaccactgttcattttcttctcagTGAGCTTGACTACCATGAGGCGACTTCTGTGAACAGCCGGTGCCAAGCTATCTGTGACCAGTGGGATAACCTGGGTACACCTGACCCAGAGAGGAGAGATGCATTAGAGgtaagtggtagggccgcaaggagataagaccagcagtctgagaagaatct Alignment from Spaln_nt2Genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACAC-TGACCCAGAAGAGGAGGGACGCACTAGAG cttaactctgccacataccttgggtctaccactgttcattttcttctcagTGAGCTTGACTACCATGAGGCGACTTCTGTGAACAGCCGGTGCCAAGCTATCTGTGACCAGTGGGATAACCTGGGTACACCTGACCCAG-AGAGGAGAGATGCATTAGAGgtaagtggtagggccgcaaggagataagaccagcagtctgagaagaatct Alignment from Pairagon TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACA-CTGACCCAGAAGAGGAGGGACGCACTAGAG cttaactctgccacataccttgggtctaccactgttcattttcttctcagTGAGCTTGACTACCATGAGGCGACTTCTGTGAACAGCCGGTGCCAAGCTATCTGTGACCAGTGGGATAACCTGGGTACACCTGACCCAG-AGAGGAGAGATGCATTAGAGgtaagtggtagggccgcaaggagataagaccagcagtctgagaagaatct Alignment from Exonerate_protein2genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cttaactctgccacataccttgggtctaccactgttcattttcttctcagTGAGCTTGACTACCATGAGGCGACTTCTGTGAACAGCCGGTGCCAAGCTATCTGTGACCAGTGGGATAACCTGGGTACACCTGACCCAGAGAGGAGAGATGCATTAGAGgtaagtggtagggccgcaaggagataagaccagcagtctgagaagaatct Alignment from Exonerate_coding2genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cttaactctgccacataccttgggtctaccactgttcattttcttctcagTGAGCTTGACTACCATGAGGCGACTTCTGTGAACAGCCGGTGCCAAGCTATCTGTGACCAGTGGGATAACCTGGGTACACCTGACCCAGAGAGGAGAGATGCATTAGAGgtaagtggtagggccgcaaggagataagaccagcagtctgagaagaatct Alignment from GeneWise TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cttaactctgccacataccttgggtctaccactgttcattttcttctcagTGAGCTTGACTACCATGAGGCGACTTCTGTGAACAGCCGGTGCCAAGCTATCTGTGACCAGTGGGATAACCTGGGTACACCTGACCCAGAGAGGAGAGATGCATTAGAGgtaagtggtagggccgcaaggagataagaccagcagtctgagaagaatct #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACA-GCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagagACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATACGCTCCAT-CCGCAATGTCAATGTACAAAACTTCCATACTaggtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagagACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATACGCTCCATCCGCAATGTCAATGTACAAAACTTCCATACTaggtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATACGCTCCATCCGCAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATACGCTCCATCCGCAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTA--------CCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAA--------TACGCTCCATCCGCAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATACGCTCCATCCGCAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATACGCTCCATCCGCAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATACGCTCCATCCGCAATGTCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAAC-CTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagaaATAGTTGACGGGAACCCTGAAAATGA-CCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAggtaagctgatgaaaagtgcatgagccaggccagctcactgcatcccttct Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagaaATAGTTGACGGGAACCCTGAAAATGACCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAggtaagctgatgaaaagtgcatgagccaggccagctcactgccgcctctga Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCCTGAAAATGACCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcactgcatcccttct Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCCTGAAAATGACCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcactgcatcccttct Alignment from Pairagon AAATTGTTGACGGGAA-CCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCCTGAAAATGACCTT-GGCATGATCTGGACAATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcactgcatcccttct Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCCTGAAAATGACCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcactgcatcccttct Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCCTGAAAATGACCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcactgcatcccttct Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCCTGAAAATGACCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcactgcatcccttct #### Actr1a_ID9872_8 --> 0 - 1 Original Alignment ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCA-GGAGGTTCTACCCTGTTCAAAg cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCACGGAGGTT-TACCCTGTTTAAAggtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from CESAR ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCACGGAGGTTTACCCTGTTTAAAggtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from Spaln_aa2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCACGGAGGTTTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from Spaln_nt2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCA-GGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCACGGAGGTT-TACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from Pairagon ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCACGGAGGTTTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from Exonerate_protein2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCACGGAGGTTTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from Exonerate_coding2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCACGGAGGTTTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct Alignment from GeneWise ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG cacaagttggtggtctcagtctgctcctaacatgtagtctccctcctcagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAGGCATCCACGAAGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCACGGAGGTTTACCCTGTTTAAAGgtgagtgtatccacttttgagccaaccatagaaacaacctgatcatttct #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGG-ATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccaggcCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGCATACGAG-TTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAggtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from CESAR gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccaggcCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGCATACGAGTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAggtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGCATACGAGTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGCATACGAGTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Pairagon GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGG-ATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGCATACGAG-TTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGCATACGAGTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGCATACGAGTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGCATACGAGTTTAGTGGCATCCATTCTTGACTTCATTGAGCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGAC-TTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacaggcATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACCTTCCCACGCA-TGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from CESAR gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacaggcATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACCTTCCCACGCATGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Spaln_aa2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACCTTCCCACGCATGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACCTTCCCACGCATGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Pairagon GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGA-CTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACCTTCCCACGCA-TGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACCTTCCCACGCATGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACCTTCCCACGCATGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from GeneWise GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACCTTCCCACGCATGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATC-CCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCCAAC-TGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCCAACTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCCAACTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCCAACTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCCAACTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCCAACTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCCAACTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCCAACTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTG-CCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCCTTG-TTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCGGGCTGTCTGGGCCGTCGGgggtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---gg ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCCTTGTTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCGGGCTGTCTGGGCCGTCGGgggtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCCTTGTTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCGGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCCTTGTTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCGGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCCTTGTTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCGGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCCTTGTTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCGGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCCTTGTTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCGGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- ggtaggttctcttcctagctactgttgatgtgaatgtcttacattttcagGCTGTAGAACTGCCTTGTTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCGGGCTGTCTGGGCCGTCGGGGgtaagtatcatgacctcccagccatggcttttatttctgttaatgcagcc #### Adrbk1_ID482_13 --> 1 - 0 Original Alignment aCACAGCCCCTTCCGGCAGCAC-AAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagaCACAGTCACTTCCGGCAGCACCAAGACCA-AGACACTCATGACATCGACCGCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from CESAR aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagaCACAGTCACTTCCGGCAGCACCAAGACCAAGACACTCATGACATCGACCGCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from Spaln_aa2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACCAAGACCAAGACACTCATGACATCGACCGCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from Spaln_nt2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACCAAGACCAAGACACTCATGACATCGACCGCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from Pairagon ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACCAAGACCAAGACACTCATGACATCGACCGCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from Exonerate_protein2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACCAAGACCAAGACACTCATGACATCGACCGCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from Exonerate_coding2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACCAAGACCAAGACACTCATGACATCGACCGCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from GeneWise ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACCAAGACCAAGACACTCATGACATCGACCGCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment GTgt gGGCACACACGGG-TACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GTgtgtaagtgcccacatattcactccacgggttttgtctggcttttcaggGGCACACATGGGCTACATAGCCC-CAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAgggtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from CESAR GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GTgtgtaattgcccacatattcactccacgggttttgtctggcttttcaggGGCACACATGGGCTACATAGCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAgggtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from Spaln_aa2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGCTACATAGCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from Spaln_nt2Genome GTGT GGGCACACACGGG-TACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGCTACATAG-CCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from Pairagon GTGT GGGCACACACGGG-TACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGCTACATAG-CCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from Exonerate_protein2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGCTACATAGCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from Exonerate_coding2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGCTACATAGCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from GeneWise GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGCTACATAGCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGA-GTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtgagttagcttaggggatggttcacatttggtattttacaggtGGGGACCTGCACTACCACTTATCACAGCATGGACGTCTTCT-AGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtaagatagcttaggggatggttcacatttggtattttacaggtGGGGACCTGCACTACCACTTATCACAGCATGGACGTCTTCTAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGACGTCTTCTAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGACGTCTTCTAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGA-GTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGACGTCTTCTA-GAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGACGTCTTCTAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGACGTCTTCTAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from GeneWise CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGACGTCTTCTAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGTCTG---GAC-AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtaggTATGCTAAGAGGTGTCTGGAAAACCAAGAAAC-CATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from CESAR gTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtaggTATGCTAAGAGGTGTCTGGAAAACCAAGAAACCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTGGACAAGAAACGC---ATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACCAAGAAACCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGGA----CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACCAAGAAAC-CATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Pairagon GTACGCCATGAAGTGTCTGGA----CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACCAAGAAAC-CATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACCAAGAAACCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Exonerate_coding2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACCAAGAAACCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from GeneWise GTACGCCATGAAGTGTCTGGACAAGAAACGC---ATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACCAAGAAACCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca #### Afap1l2_ID12244_19 --> 0 - 0 Original Alignment CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATG-GTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGCGTTATGG-TAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from CESAR CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGCGTTATGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Spaln_aa2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCAGCT---ACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGCGTTATGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Spaln_nt2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCAG---CTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGCGTTATGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Pairagon CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCAG---CTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGCGTTATGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Exonerate_protein2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGCGTTATGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Exonerate_coding2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGCGTTATGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from GeneWise CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGCGTTATGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATG-GCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGCGCTTCCGCCC-CATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAggtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGCGCTTCCGCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAggtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGCGCTTCCGCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGCGCTTCCGCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATG-GCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGCGCTTCCG-CCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGCGCTTCCGCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGCGCTTCCGCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGCGCTTCCGCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTC-AACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagatggctgcagccgggacttagccaactgttctcttgcctttcagGAGCAGCCTGGTTCACCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCCAATTATT-CCAGTGCAAGCTGGTGGCTCCGGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATCCTCAACAAGTATGATggtggggatcatgcccacttacagcccagacttcccacaagctacagaggg Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagatggctgcagccgggacttagccaactgttctcttgcctttcagGAGCAGCCTGGTTCACCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCCAATTATTCCAGTGCAAGCTGGTGGCTCCGGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATCCTCAACAAGTATGATggtggggatcatgcccacttacagcccagacttcccacaagctacagaggg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagccgggacttagccaactgttctcttgcctttcagGAGCAGCCTGGTTCACCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCCAATTATTCCAGTGCAAGCTGGTGGCTCCGGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATCCTCAACAAGTATGATGgtggggatcatgcccacttacagcccagacttcccacaagctacagaggg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagccgggacttagccaactgttctcttgcctttcagGAGCAGCCTGGTTCACCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCCAATTATTCCAGTGCAAGCTGGTGGCTCCGGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATCCTCAACAAGTATGATGgtggggatcatgcccacttacagcccagacttcccacaagctacagaggg Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagccgggacttagccaactgttctcttgcctttcagGAGCAGCCTGGTTCACCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCCAATTATTCCAGTGCAAGCTGGTGGCTCCGGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATCCTCAACAAGTATGATGgtggggatcatgcccacttacagcccagacttcccacaagctacagaggg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagccgggacttagccaactgttctcttgcctttcagGAGCAGCCTGGTTCACCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCCAATTATTCCAGTGCAAGCTGGTGGCTCCGGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATCCTCAACAAGTATGATGgtggggatcatgcccacttacagcccagacttcccacaagctacagaggg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagccgggacttagccaactgttctcttgcctttcagGAGCAGCCTGGTTCACCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCCAATTATTCCAGTGCAAGCTGGTGGCTCCGGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATCCTCAACAAGTATGATGgtggggatcatgcccacttacagcccagacttcccacaagctacagaggg Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagccgggacttagccaactgttctcttgcctttcagGAGCAGCCTGGTTCACCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCCAATTATTCCAGTGCAAGCTGGTGGCTCCGGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATCCTCAACAAGTATGATGgtggggatcatgcccacttacagcccagacttcccacaagctacagaggg #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACC-TGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAATCTGCAGACGCTGGATGA-GGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAATCTGCAGACGCTGGATGAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAATCTGCAGACGCTGGATGAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGAC-CTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAATCTGCAGACGCTGGATG-AGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGAC-CTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAATCTGCAGACGCTGGATG-AGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAATCTGCAGACGCTGGATGAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAATCTGCAGACGCTGGATGAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAATCTGCAGACGCTGGATGAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACA-GAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctgttctcactatctcccccatttctttccctaggaAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACACGAG---ATGCAGGCAGAGCTACTG---CAGCATCTGGACCAGgtgagtatcaccttctgggtgatcctcagAGCTGCTTTGCTGTGATGCTG Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctgttctcactatctcccccatttctttccctaggaAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACA--CGAGATGCAGGCAGAGCTACTG---CAGCATCTGGACCAGgtgagcactcagaattttctttcccacagAGCTGCTTTGCTGTGATGCTG Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACA---------GAGAAGGTGCTGGCAGAGCTGCTGCCC---------CAGTATCTGGAC------CAGAGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctgttctcactatctcccccatttctttccctagGAAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACACGAGATGCAGGCAGAGCTACTGCAGCATCTGGACCAGGTGAGTATCACCTTCTGGGTGATCCTCAGAGCTGCTTTGCTGTGATGCTG Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-------------------------------AGCTGCTTTGCTGTGATGT gtatacacgcaccaacctgttctcactatctcccccatttctttccctagGAAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACAC--ACGAGATGCAGGCAGAGCTACTG---CAGCATCTGGACCAGGTGAGTATCACCTTCTGGGTGATCCTCAGAG--CTGCTTTGCTGTGATGC Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACA-GAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctgttctcactatctcccccatttctttccctagGAAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACACGAGA---TGCAGGCAGAGCTACTG---CAGCATCTGGACCAGGTGAGTATCACCTTCTGGGTGATCCTCAGAGCTGCTTTGCTGTGATGCTG Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTG-----GACCAGAGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctgttctcactatctcccccatttctttccctaggaaactgtgtggtattgagGCCATCTGAAATCAGTAAGAACACACGAGATGCAGGCAGAGCTACTGCAGCATCTGGACCAGGTGAGTATCACCTTCTGGGTGATCCTCAGAGCTGCTTTGCTGTGATGCTG Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAG CTGCTTTGCTGTGATGTTG gtatacacgcaccaacctgttctcactatctcccccatttctttccctagGAAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACAC--ACGAGATGCAGGCAGAGCTACTGC---AGCATCTGGACC--AGgtgagtatcaccttctgggtgatcctcagagCTGCTTTGCTGTGATGCTG Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAG---------AAGGTGCTGGCAGAGCTGCTGCCC---CAGTATCTG------------GACCAGAGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctgttctcactatctcccccatttctttccctagGAAACTGTGTGGTATTGAGGCCATCTGAAATCAGTAAGAACACACGAGATGCAGGCAGAGCTACTGCAGCATCTGGACCAGGTGAGTATCACCTTCTGGGTGATCCTCAGAGCTGCTTTGCTGTGATGCTG #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATG-CAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagccCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCCAGGAGGAGA-CTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagccCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCCAGGAGGAGACTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCCAGGAGGAGACTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGC-AGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCCAGGAGGAGA-CTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATG-CAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCCAGGAGGAGA-CTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCCAGGAGGAGACTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCCAGGAGGAGACTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCCAGGAGGAGACTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag #### Ankrd13d_ID465_8 --> 0 - 1 Original Alignment GTGTACAGTGCCACCAATGTGGAGCTGGTG-ACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCTGGTACACACGCACAA-AACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAggtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from CESAR GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCTGGTACACACGCACAAAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAggtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from Spaln_aa2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCTGGTACACACGCACAAAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from Spaln_nt2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCTGGTACACACGCACAAAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from Pairagon GTGTACAGTGCCACCAATGTGGAGCTGGTG-ACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCTGGTACACACGCACAA-AACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from Exonerate_protein2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCTGGTACACACGCACAAAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from Exonerate_coding2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCTGGTACACACGCACAAAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc Alignment from GeneWise GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttctttcacactttttaaaccttttctagGTGTACAGTGCCACAAATGTGGAGCTGGTACACACGCACAAAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtattgccacttgcaactgtcttctgctcaagcttcctagggtatgtgcc #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAAGTCTTGAGAAAAGCC-CTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCCTTACAGGCC-TCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAGTTT---GCAGATGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCCTTACAGGCCTCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAGTTT---GCAGATGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCCTTACAGGCCTCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAGTTT---GCAGATGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from Spaln_nt2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCCTTACAGGCCTCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAGTTTG---CAGATGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from Pairagon CCCTTGGATGAAGTCTTGAGAAAAG-CCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCCTTACAGGCC-TCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAGTT---TGCAGATGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCCTTACAGGCCTCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAGTTT---GCAGATGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCCTTACAGGCCTCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAGTTT---GCAGATGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacatacctaagttgacctttttgttctctgtcagCCCTTAGATGAAGTCTTGAGAAAAGCCCCTTACAGGCCTCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAGTTT---GCAGATGAACTACATGGTGCCATGAAGgtattatgttctaacagccttgctcctataacaggtgccaggagctttta #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCC-CAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCCGGTTTG-TGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from CESAR ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCCGGTTTGTGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Spaln_aa2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCCGGTTTGTGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Spaln_nt2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCCGGTTTGTGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Pairagon ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCCGGTTTGTGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Exonerate_protein2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCCGGTTTGTGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Exonerate_coding2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCCGGTTTGTGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCCGGTTTGTGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc #### Bbs1_ID729_5 --> 0 - 2 Original Alignment GACCAGATTGACCCC-TTAACCCTGAAGGAGATGCTGGAGGACATCag tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCAT---GACCCCCTTGA-CTTGAAAGATATGCTGGAAGATATCaggtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from CESAR GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCag tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCAT---GACCCCCTTGACTTGAAAGATATGCTGGAAGATATCaggtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from Spaln_aa2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCAT---GACCCCCTTGACTTGAAAGATATGCTGGAAGATATCAGgtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from Spaln_nt2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCA---TGACCCCCTTGACTTGAAAGATATGCTGGAAGATATCAGgtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from Pairagon GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCA---TGACCCCCTTGACTTGAAAGATATGCTGGAAGATATCAGgtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from Exonerate_protein2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCAT---GACCCCCTTGACTTGAAAGATATGCTGGAAGATATCAGgtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from Exonerate_coding2genome GACCAGATTGACCCCTT tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttaggatcatgacccccttgacttgaaagatatgctggaagatatcaggtaagtgttcacctttcctccttggtgcccccaAAAACTCTTCCTAAGGG Alignment from GeneWise GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCAT---GACCCCCTTGACTTGAAAGATATGCTGGAAGATATCAGgtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg #### Bbs1_ID732_2 --> 1 - 1 Original Alignment cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCAC-ACCTTCTCCTCCTGCCTGt aatttatttcatcatggggcatatcttctctctctcttctccttttttaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATCACTT-CTCCTCCTGTCTGtgtgaggccccatgaatgacttgggacatctggattctaatttttattctt Alignment from CESAR cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGt aatttatttcatcatggggcatatcttctctctctcttctccttttttaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATCACTTCTCCTCCTGTCTGtgtgaggccccatgaatgacttgggacatctggattctactctgttcattg Alignment from Spaln_aa2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATCACTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctaatttttattctt Alignment from Spaln_nt2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATCACTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctaatttttattctt Alignment from Pairagon CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATCACTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctaatttttattctt Alignment from Exonerate_protein2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATCACTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctaatttttattctt Alignment from Exonerate_coding2genome AACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATCACTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctaatttttattctt Alignment from GeneWise AACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATCACTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctaatttttattctt #### Best1_ID2637_2 --> 1 - 1 Original Alignment aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTG-GCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg ccacagccagaatgatactctagagtcttttcttttttttttttatgcagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGCGCTCTGTACT-TGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGggtgagtgccccttgtagctagtgatgacctagccctcacccaagcccctg Alignment from CESAR aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTG-GCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg ccacagccagaatgatactctagagtcttttcttttttttttttatgcagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGCGCTCTGTAC-TTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGggtgagtgccccttgtagctagtgatgacctagccctcacccaagcccctg Alignment from Spaln_aa2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagccagaatgatactctagagtcttttcttttttttttttatgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGCGCTCTGTACTTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtgagtgccccttgtagctagtgatgacctagccctcacccaagcccctg Alignment from Spaln_nt2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTG-GCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagccagaatgatactctagagtcttttcttttttttttttatgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGCGCTCTGTACT-TGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtgagtgccccttgtagctagtgatgacctagccctcacccaagcccctg Alignment from Pairagon AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTG-GCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagccagaatgatactctagagtcttttcttttttttttttatgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGCGCTCTGTACT-TGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtgagtgccccttgtagctagtgatgacctagccctcacccaagcccctg Alignment from Exonerate_protein2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagccagaatgatactctagagtcttttcttttttttttttatgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGCGCTCTGTACTTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtgagtgccccttgtagctagtgatgacctagccctcacccaagcccctg Alignment from Exonerate_coding2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagccagaatgatactctagagtcttttcttttttttttttatgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGCGCTCTGTACTTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtgagtgccccttgtagctagtgatgacctagccctcacccaagcccctg Alignment from GeneWise AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagccagaatgatactctagagtcttttcttttttttttttatgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGCGCTCTGTACTTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtgagtgccccttgtagctagtgatgacctagccctcacccaagcccctg #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGAT-AACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGGATCAACTCAC-CCATGGA------GACCGCATCTCACACCATCAGCCAggtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGGATCAACTCACCCATGGAGAC------CGCATCTCACACCATCAGCCAggtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGGATCAACTCACCCATGGAGAC------CGCATCTCACACCATCAGCCAGgtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGAT-AACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGGATCAACTCAC-CCATGGAGAC------CGCATCTCACACCATCAGCCAGgtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from Pairagon GTTAATATCCGACAAAGGGAT-AACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGGATCAACTCAC-CCATGGAGAC------CGCATCTCACACCATCAGCCAGgtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from Exonerate_protein2genome ttctggagaggggagtctaagctcacgggtttcctcttcatttttaataggtcaatacccgtcaaagggatcaactcacccatggagaccgcatctcacaccatcagccaggtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from Exonerate_coding2genome ttctggagaggggagtctaagctcacgggtttcctcttcatttttaataggtcaatacccgtcaaagggatcaactcacccatggagaccgcatctcacaccatcagccaggtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from GeneWise GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGGATCAACTCACCCATGGA------GACCGCATCTCACACCATCAGCCAGgtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt #### Btaf1_ID7227_10 --> 0 - 0 Original Alignment ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCG-TTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGG-CAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from CESAR ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGCAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from Spaln_aa2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGCAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from Spaln_nt2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGCAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from Pairagon ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGCAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from Exonerate_protein2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGCAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from Exonerate_coding2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGCAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from GeneWise ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCACTTGGCAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat #### Btrc_ID9458_8 --> 0 - 0 Original Alignment ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATA-GTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATACGTCAGTG-CCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from CESAR ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATACGTCAGTGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from Spaln_aa2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATACGTCAGTGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from Spaln_nt2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATACGTCAGTGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from Pairagon ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATA-GTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATACGTCAGT-GCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from Exonerate_protein2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATACGTCAGTGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from Exonerate_coding2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATACGTCAGTGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from GeneWise ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATACGTCAGTGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc #### C030046E11Rik_ID6307_21 --> 0 - 2 Original Alignment GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTT-CCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag cctcagcagagcatctttgattagaactttgtttttttttttaatttcagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCTCCTGGCA-ATTTGGCTTACAAAAAACATTAAGTATGCCAACCGGTCCTTCTGGGAAAaggcaagagaagagagggaggttatggctccagagctttcctgcactcctca Alignment from CESAR GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag cctcagcagagcatctttgattagaactttgtttttttttttaatttcagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCTCCTGGCAATTTGGCTTACAAAAAACATTAAGTATGCCAACCGGTCCTTCTGGGAAAaggcaagagaagagagggaggttatggctccagagctttcctgcactcctca Alignment from Spaln_aa2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cctcagcagagcatctttgattagaactttgtttttttttttaatttcagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCTCCTGGCAATTTGGCTTACAAAAAACATTAAGTATGCCAACCGGTCCTTCTGGGAAAAGgcaagagaagagagggaggttatggctccagagctttcctgcactcctca Alignment from Spaln_nt2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cctcagcagagcatctttgattagaactttgtttttttttttaatttcagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCTCCTGGCAATTTGGCTTACAAAAAACATTAAGTATGCCAACCGGTCCTTCTGGGAAAAGgcaagagaagagagggaggttatggctccagagctttcctgcactcctca Alignment from Pairagon GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cctcagcagagcatctttgattagaactttgtttttttttttaatttcagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCTCCTGGCAATTTGGCTTACAAAAAACATTAAGTATGCCAACCGGTCCTTCTGGGAAAAGgcaagagaagagagggaggttatggctccagagctttcctgcactcctca Alignment from Exonerate_protein2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cctcagcagagcatctttgattagaactttgtttttttttttaatttcagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCTCCTGGCAATTTGGCTTACAAAAAACATTAAGTATGCCAACCGGTCCTTCTGGGAAAAGgcaagagaagagagggaggttatggctccagagctttcctgcactcctca Alignment from Exonerate_coding2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cctcagcagagcatctttgattagaactttgtttttttttttaatttcagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCTCCTGGCAATTTGGCTTACAAAAAACATTAAGTATGCCAACCGGTCCTTCTGGGAAAAGgcaagagaagagagggaggttatggctccagagctttcctgcactcctca Alignment from GeneWise GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGA----------------- cctcagcagagcatctttgattagaactttgtttttttttttaatttcagGAGCCCAGTTCAAGTGGGGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCTCCTGGCAATTTGGCTTACAAAAAACATTAAGTATGCCAACCGGTCCTTCTGGGAAAAGGCAAGAGAAGAGAGGGAGgttatggctccagagctttcctgcactcctca #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGG-ATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtgagcttctattgttcatatggaccctaatatactcttttactctgtagcTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCCTTACCC-ATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACtggtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from CESAR cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtgagcttctattgttcatatggaccctaatatactcttttactctgtagcTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCCTTACCCATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACtggtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCCTTACCCATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCCTTACCCATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from Pairagon CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCC-------------GAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGG-------------CCTTACCCATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCCTTACCCATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCCTTACCCATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg Alignment from GeneWise CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtgagcttctattgttcatatggaccctaatatactcttttactctgtagCTACTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCTTGATTCTCCGAGAAGCGTCAGTGGTCAGTCAGCTCCTTGGGCCTTACCCATCCCCTGGGATGGATGGAGAAATGTTACAAAACATAAAATCTGGACTGCAAGCAGTTGATCGCTGGGACTCAACAGACTGgtaggcgaatgcttcgtaccctggtcccttggcaaattatggccttaatg #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATG-GGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaataggtGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGCGGTCCCA-GCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaataggtGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGCGGTCCCAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGCGGTCCCAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGCGGTCCCAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGCGGTCCCAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGCGGTCCCAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGCGGTCCCAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGCGGTCCCAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATA-CTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACCTCCAAGACA-TGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACCTCCAAGACATGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACCTCCAAGACATGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACCTCCAAGACATGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATA-CTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACCTCCAAGACA-TGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACCTCCAAGACATGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACCTCCAAGACATGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA---GAATTTGTTCGGATGATGTCTCGG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACCTCCAAGACATGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGGTAACTTTCCCCCTTCTTCTTCCCACatggcagcatttgtgaatggtgtt #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG ttattgcctttatgtctggatgtctgccattttaaacaattatttcccagggTTTTCCAAACTACTAGACACAGGCCTGGATGGTCGTTG-GACCTTTGATCTCTTTAGGgttagtagataatccaccccactgaactaccagccaggaggagctccacc Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttattgcctttatgtctggatgtctgccattttaaacaattatttcccagggTTTTCCAAACTACTAGACACAGGCCTGGATGGTCGTTGGACCTTTGATCTCTTTAGGgttagtagataatccaccccactgaactaccagccaggaggagctccacc Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttattgcctttatgtctggatgtctgccattttaaacaattatttcccagGGTTTTCCAAACTACTAGACACAGGCCTGGATGGTCGTTGGACCTTTGATCTCTTTAGGgttagtagataatccaccccactgaactaccagccaggaggagctccacc Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttattgcctttatgtctggatgtctgccattttaaacaattatttcccagGGTTTTCCAAACTACTAGACACAGGCCTGGATGGTCGTTGGACCTTTGATCTCTTTAGGgttagtagataatccaccccactgaactaccagccaggaggagctccacc Alignment from Pairagon GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttattgcctttatgtctggatgtctgccattttaaacaattatttcccagGGTTTTCCAAACTACTAGACACAGGCCTGGATGGTCGTTGGACCTTTGATCTCTTTAGGgttagtagataatccaccccactgaactaccagccaggaggagctccacc Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttattgcctttatgtctggatgtctgccattttaaacaattatttcccagGGTTTTCCAAACTACTAGACACAGGCCTGGATGGTCGTTGGACCTTTGATCTCTTTAGGgttagtagataatccaccccactgaactaccagccaggaggagctccacc Alignment from Exonerate_coding2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttattgcctttatgtctggatgtctgccattttaaacaattatttcccagGGTTTTCCAAACTACTAGACACAGGCCTGGATGGTCGTTGGACCTTTGATCTCTTTAGGgttagtagataatccaccccactgaactaccagccaggaggagctccacc Alignment from GeneWise GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG ttattgcctttatgtctggatgtctgccattttaaacaattatttcccagGGTTTTCCAAACTACTAGACACAGGCCTGGATGGTCGTTGGACCTTTGATCTCTTTAGGgttagtagataatccaccccactgaactaccagccaggaggagctccacc #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGG-AACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATGGGAAGCTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATA-CCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATGGGAAGCTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATACCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATGGGAAGCTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATACCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATGGGAAGCTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATACCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from Pairagon CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATGGGAAGCTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATACCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATGGGAAGCTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATACCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from Exonerate_coding2genome ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagcgagatggaaatgggaagctagggctggtggaattcaacatcctatggcaaccataccgaaattatctggtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcaaacaaatgcttaagccaaagcagggcattttattccccaacatcagCGAGATGGAAATGGGAAGCTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATACCGAAATTATCTGgtgcagggtgggatgttctctggcatgttccctgggacctcatgtggaaa #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGG-CCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCCAGAAT-TGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCCAGAATTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCCAGAATTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCCAGAATTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCCAGAATTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCCAGAATTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCCAGAATTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaactcagtgttggttggcctgatgcctttctgtttccttcaaagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGACAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCCAGAATTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGCTAGAGAACCGGCTGCTCATGAGGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtatgggcaagcttgggtacccatgagaaagaacccctgactgtccataa #### Catsper1_ID926_3 --> 2 - 1 Original Alignment aaTGGTACTTCATGGTCTTG-GACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gatgaggactataggctttgtcactgaaaatttgtttattttcattatagaaTGGTACTTCATGGTCTTACGACT-CATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGACCCATCGAATAACCTGggtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from CESAR aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gatgaggactataggctttgtcactgaaaatttgtttattttcattatagaaTGGTACTTCATGGTCTTACGACTCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGACCCATCGAATAACCTGggtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Spaln_aa2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTACGACTCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Spaln_nt2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTACGACTCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Pairagon AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTACGACTCATCTTCCTCACCATCTATGTATTAGAAGCAG---TCAAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Exonerate_protein2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTACGACTCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Exonerate_coding2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTACGACTCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from GeneWise AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTACGACTCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa #### Catsper1_ID927_4 --> 2 - 2 Original Alignment acTTCTTCATCATGGTC-ATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagacTTTTTCATTATGGTCCATGGCA---C-GGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from CESAR acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagacTTTTTCATTATGGTCCATGGCACG---GGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Spaln_aa2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCCATGGCACG---GGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Spaln_nt2Genome ACTTCTTCATCATGGTC-ATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCCATGGCA----CGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Pairagon ACTTCTTCATCATGGT-CATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCCATGGCA----CGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Exonerate_protein2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCCATGGCACG---GGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Exonerate_coding2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCCATGGCACG---GGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from GeneWise ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCCATGGCACG---GGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGT-GGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccccccttgcctcatcactaacttgacttaacttattgctatttttttagtATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTAGTCGGGTCAT-ACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCtgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccccccttgcctcatcactaacttgacttaacttattgctatttttttagtATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTAGTCGGGTCATACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCtgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTAGTCGGGTCATACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTAGTCGGGTCATACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTAGTCGGGTCATACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTAGTCGGGTCATACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTAGTCGGGTCATACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCTTAGTCGGGTCATACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTC-CGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagtcCTCTTCTCTGTGGTACTCCCGAGCAC-CTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAggtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagtcCTCTTCTCTGTGGTACTCCCGAGCACCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAggtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCCGAGCACCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCCGAGCACCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Pairagon TCCTCTTCTCTGTGGTTCT-CCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCCGAGCACC-TTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCCGAGCACCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCCGAGCACCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCCGAGCACCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata #### Catsper1_ID930_7 --> 2 - 2 Original Alignment gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTC-ATCCAGTACTTCATCTTCCTCaa cacataaagagttggttacttctgctatgcaggcctacaatctcttacagctGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAAT-CTTTATCTTCCTCaagtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from CESAR gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa cacataaagagttggttacttctgctatgcaggcctacaatctcttacagctGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATCTTTATCTTCCTCaagtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from Spaln_aa2Genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATCTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from Spaln_nt2Genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGT-CATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAAT-CTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from Pairagon GCGCCTGGTACATCATACCGATCCTCATGATTTACATTG-TCATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAAT-CTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from Exonerate_protein2genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATCTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from Exonerate_coding2genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATCTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from GeneWise GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATCTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTGGTAGATAAC-TTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagcCTGGTGATTGCAGTTCTAGTAGATAACCTTCC-GATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagcCTGGTGATTGCAGTTCTAGTAGATAACCTTCCGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATAACCTTCCGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATAACCTTCCGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from Pairagon CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATAACCTTCCGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATAACCTTCCGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATAACCTTCCGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATAACCTTCCGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTAC-CGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtaagcgtacttagggtcagccaaacctcctttccatgacaggGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCCGTGTACTAG-GCCTGGGCCCCTACCCCATACTaagtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from CESAR GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtcagtgtacttagggtcagccaaacctcctttccatgacaggGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCCGTGTACTAGGCCTGGGCCCCTACCCCATACTaagtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from Spaln_aa2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagcgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCCGTGTACTAGGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from Spaln_nt2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagcgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCCGTGTACTAGGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from Pairagon GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTA-CCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagcgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCCGTGTACTAG-GCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from Exonerate_protein2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagcgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCCGTGTACTAGGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from Exonerate_coding2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagcgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCCGTGTACTAGGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from GeneWise GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagcgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCCGTGTACTAGGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCA-CAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagaGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACCAACTTG-GATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagaGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACCAACTTGGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACCAACTTGGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTG------AGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACCAACTTGGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACCAACTTGGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACCAACTTGGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACCAACTTGGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACCAACTTGGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag #### Ccdc88b_ID1829_20 --> 1 - 2 Original Alignment gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAG-CGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgggcataggctccctcttaccctccttctgccttaggCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCCGTGGTC-GGATGAAGAGCTGCGCAGACTTCATAATGAGCATCAGaggtaagtactttggttcaggcctgcccccccaccccggcatagcattctca Alignment from CESAR gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgggcataggctccctcttaccctccttctgccttaggCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCCGTGGTCGGATGAAGAGCTGCGCAGACTTCATAATGAGCATCAGaggtaagtactttggttcaggcctgcccccccaccccggcatagcattctca Alignment from Spaln_aa2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcataggctccctcttaccctccttctgccttagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCCGTGGTCGGATGAAGAGCTGCGCAGACTTCATAATGAGCATCAGAGgtaagtactttggttcaggcctgcccccccaccccggcatagcattctca Alignment from Spaln_nt2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcataggctccctcttaccctccttctgccttagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCCGTGGTCGGATGAAGAGCTGCGCAGACTTCATAATGAGCATCAGAGgtaagtactttggttcaggcctgcccccccaccccggcatagcattctca Alignment from Pairagon GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcataggctccctcttaccctccttctgccttagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCCGTGGTCGGATGAAGAGCTGCGCAGACTTCATAATGAGCATCAGAGgtaagtactttggttcaggcctgcccccccaccccggcatagcattctca Alignment from Exonerate_protein2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcataggctccctcttaccctccttctgccttagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCCGTGGTCGGATGAAGAGCTGCGCAGACTTCATAATGAGCATCAGAGgtaagtactttggttcaggcctgcccccccaccccggcatagcattctca Alignment from Exonerate_coding2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcataggctccctcttaccctccttctgccttagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCCGTGGTCGGATGAAGAGCTGCGCAGACTTCATAATGAGCATCAGAGgtaagtactttggttcaggcctgcccccccaccccggcatagcattctca Alignment from GeneWise GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgggcataggctccctcttaccctccttctgccttagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCCGTGGTCGGATGAAGAGCTGCGCAGACTTCATAATGAGCATCAGAGgtaagtactttggttcaggcctgcccccccaccccggcatagcattctca #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGC-CTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAG---GAGGCTGGTCACTTGCCCCGCCCTGCAGGAAG-ACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGAG---GCTGGTCACTTGCCCCGCCCTGCAGGAAGACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGAG---GCTGGTCACTTGCCCCGCCCTGCAGGAAGACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCC-TGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGA---GGCTGGTCACTTGCCCCGCCCTGCAGGAAG-ACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACG-CCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGA---GGCTGGTCACTTGCCCCGCCCTGCAGGAAG-ACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGAG---GCTGGTCACTTGCCCCGCCCTGCAGGAAGACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Exonerate_coding2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGAG---GCTGGTCACTTGCCCCGCCCTGCAGGAAGACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACTAAAGGAG---GCTGGTCACTTGCCCCGCCCTGCAGGAAGACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAGCAACTGCTGGACTCC-CAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagaGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCCATGCAGAGG-TCAG---TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from CESAR gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagaGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCCATGCAGAGGTCAG---TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCCATGCAGAGGTCAG---TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCC-AGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCCATGCAGAGGT-CAG---TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Pairagon GGAGGAGAAGGCTGAGCAACTGCTGGACTCC------------CAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCCATGCAGAGGTCAG---------------TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCCATGCAGAGGTCAG---TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Exonerate_coding2genome tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagagaagagaaggctgagcagctgctagactccccatgcagaggtcagttggatgccgaaattcgaagacttcgccaggaggtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCCATGCAGAGGTCAG---TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCC-CACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCCACT-GCTGCTACCTGAGGCTCCTGCCAATGCG------GAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGgtgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCCACTGCTGCTACCTGAGGCTCCTGCCAAT------GCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGgtgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCCACTGCTGCTACCTGAGGCTCCTGCCAAT------GCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCCACTGCTGCTACCTGAGGCTCCTGCCAA------TGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCCACTGCTGCTACCTGAGGCTCCTGCCAA------TGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCCACTGCTGCTACCTGAGGCTCCTGCCAAT------GCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCCACTGCTGCTACCTGAGGCTCCTGCCAAT------GCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttcctaaacccaaccttcttacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGACCCACTGCTGCTACCTGAGGCTCCTGCCAATGCG------GAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGTTGAGACGCCTGGGGCGGGAGGTgtaagcgtccaaaggcacattaaggggtcaatgagatcctggcaggttct #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCA-GCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagtGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTCGCTTGTC-AATGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagtGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTCGCTTGTCAATGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTCGCTTGTCAATGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTCGCTTGTCAATGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCG------GATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGC------TCGCTTGTCAATGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTCGCTTGTCAATGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTCGCTTGTCAATGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggcaaatggaactatgcttactcccatttcttcataccttttcctccagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTCGCTTGTCAATGTGGACCCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaggctttcaggatggtgaaatgtgagacccagcagcacctattatgga #### Ccs_ID661_7 --> 0 - 2 Original Alignment GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGG-GAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gcagtcacacgaggctgatggtactgagtatcttccccttgataccccagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGACGAAGATG-TGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGaggtagttcatatatcccccaacagaggcaatgatatgccagtggtccacct Alignment from CESAR GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gcagtcacacgaggctgatggtactgagtatcttccccttgataccccagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGaggtagttcatatatcccccaacagaggcaatgatatgccagtggtccacct Alignment from Spaln_aa2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagtcacacgaggctgatggtactgagtatcttccccttgataccccagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtagttcatatatcccccaacagaggcaatgatatgccagtggtccacct Alignment from Spaln_nt2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagtcacacgaggctgatggtactgagtatcttccccttgataccccagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtagttcatatatcccccaacagaggcaatgatatgccagtggtccacct Alignment from Pairagon GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGG-GAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagtcacacgaggctgatggtactgagtatcttccccttgataccccagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGACGAAGATG-TGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtagttcatatatcccccaacagaggcaatgatatgccagtggtccacct Alignment from Exonerate_protein2genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagtcacacgaggctgatggtactgagtatcttccccttgataccccagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtagttcatatatcccccaacagaggcaatgatatgccagtggtccacct Alignment from Exonerate_coding2genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagtcacacgaggctgatggtactgagtatcttccccttgataccccagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtagttcatatatcccccaacagaggcaatgatatgccagtggtccacct Alignment from GeneWise GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGG-- gcagtcacacgaggctgatggtactgagtatcttccccttgataccccagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGACGAAGATGTGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGGTAgttcatatatcccccaacagaggcaatgatatgccagtggtccacct #### Cd5_ID2994_4 --> 2 - 1 Original Alignment GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACC-ACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGATCTGCCTAggtgagtgacagccccactccatttcctgcgcagaaCCCCAGAGAACAGCACCTCCACCCACAACCCACCCCAC-CACCACTGTGCCTGAGCCCACAggtaagccggagtacagtccaagtagaaaaggtagaggatgaacttgtgta Alignment from CESAR GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGATCTGCCTAggtgagtgacagccccactccatttcctgcgcagaaCCCCAGAGAACAGCACCTCCACCCACAACCCACCCCACCACCACTGTGCCTGAGCCCACAggtaagccggagtacagtccaagtagaaaaggtagaggatgaacttgtgta Alignment from Spaln_aa2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGATCTGCCTAGgtgagtgacagccccactccatttcctgcgcagAACCCCAGAGAACAGCACCTCCACCCACAACCCACCCCACCACCACTGTGCCTGAGCCCACAGgtaagccggagtacagtccaagtagaaaaggtagaggatgaacttgtgta Alignment from Spaln_nt2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGATCTGCCTAGgtgagtgacagccccactccatttcctgcgcagAACCCCAGAGAACAGCACCTCCACCCACAACCCACCCCACCACCACTGTGCCTGAGCCCACAGgtaagccggagtacagtccaagtagaaaaggtagaggatgaacttgtgta Alignment from Pairagon GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGATCTGCCTAGgtgagtgacagccccactccatttcctgcgcagAACCCCAGAGAACAGCACCTCCACCCACAACCCACCCCACCACCACTGTGCCTGAGCCCACAGgtaagccggagtacagtccaagtagaaaaggtagaggatgaacttgtgta Alignment from Exonerate_protein2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGATCTGCCTAGgtgagtgacagccccactccatttcctgcgcagAACCCCAGAGAACAGCACCTCCACCCACAACCCACCCCACCACCACTGTGCCTGAGCCCACAGgtaagccggagtacagtccaagtagaaaaggtagaggatgaacttgtgta Alignment from Exonerate_coding2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGATCTGCCTAGgtgagtgacagccccactccatttcctgcgcagAACCCCAGAGAACAGCACCTCCACCCACAACCCACCCCACCACCACTGTGCCTGAGCCCACAGgtaagccggagtacagtccaagtagaaaaggtagaggatgaacttgtgta Alignment from GeneWise GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGATCTGCCTAGgtgagtgacagccccactccatttcctgcgcagAACCCCAGAGAACAGCACCTCCACCCACAACCCACCCCACCACCACTGTGCCTGAGCCCACAGgtaagccggagtacagtccaagtagaaaaggtagaggatgaacttgtgta #### Cdc42bpg_ID1575_5 --> 0 - 2 Original Alignment TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCT-GAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACag gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTCGAGATGG-GCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACaggtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from CESAR TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACag gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTCGAGATGGGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACaggtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from Spaln_aa2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTCGAGATGGGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from Spaln_nt2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTCGAGATGGGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from Pairagon TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCT-GAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTCGAGATGG-GCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from Exonerate_protein2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTCGAGATGGGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from Exonerate_coding2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTCGAGATGGGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from GeneWise TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCAGATCTATTTGGCTCGAGATGGGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTAC-GGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACCGGACCACAAT-TGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACCGGACCACAATTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACCGGACCACAATTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACCGGACCACAATTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTA-CGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACCGGACCACAAT-TGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACCGGACCACAATTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACCGGACCACAATTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACCGGACCACAATTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCCCAGGAG-CTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagagCACCTGCATGGTCCATTACAACCACAGGAGCCTTG-GCAGCTTCAGAAAGAAGTTCAGGTTCTTCAGGAGAAACTGGCGggtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagagCACCTGCATGGTCCATTACAACCACAGGAGCCTTGGCAGCTTCAGAAAGAAGTTCAGGTTCTTCAGGAGAAACTGGCGggtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCACAGGAGCCTTGGCAGCTTCAGAAAGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCACAGGAGCCTTGGCAGCTTCAGAAAGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCACAGGAGCCTTGGCAGCTTCAGAAAGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCACAGGAGCCTTGGCAGCTTCAGAAAGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCACAGGAGCCTTGGCAGCTTCAGAAAGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaaggcctggctgatctgtcagaactatgctgctttgttccccagAGCACCTGCATGGTCCATTACAACCACAGGAGCCTTGGCAGCTTCAGAAAGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtgagcgtggcatgttactagaatagccaagttccttcccatgtcctagt #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCC-CCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGAAGCCCTGCCCCCAAACA-CCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGAAGCCCTGCCCCCAAACACCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGAAGCCCTGCCCCCAAACACCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGAAGCCCTGCCCCCAAACACCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGAAGCCCTGCCCCCAAACACCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGAAGCCCTGCCCCCAAACACCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGAAGCCCTGCCCCCAAACACCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggaggaggaattatcctaagggcaacctccacttttcacccaccccagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGACGCTAGAAGCCCTGCCCCCAAACACCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgttggaatgatgatgggaattatactgtgtgttttttggcaatatataca #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGA-GTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAACGTGCAGG-TGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAACGTGCAGGTGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAACGTGCAGGTGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGA-GTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAACGTGCAGG-TGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGA-GTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAACGTGCAGG-TGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAACGTGCAGGTGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAACGTGCAGGTGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAACGTGCAGGTGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCT-CCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCCTG-GGGTCAGTCTCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAgggtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCCTGGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAgggtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCCTGGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCCTGGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCCTGGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCCTGGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCCTGGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCCTGGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTA-CAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCCAGAGCAAGC-ACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaggaatacacagctaggtggcacctctgatactgaggacccagctcat Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCCAGAGCAAGCACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaggaatacacagctaggtggcacctctgatactgaggacccagctcat Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCCAGAGCAAGCACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcat Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCCAGAGCAAGCACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcat Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGC-TACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCCAGAGCAAGCA-CGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcat Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCCAGAGCAAGCACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcat Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCCAGAGCAAGCACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcat Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCCAGAGCAAGCACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcat #### Cdc42bpg_ID1590_20 --> 1 - 1 Original Alignment cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAGGTG-GCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg gagtgaaacactttccaaggcctggcaatttttatatcttccatatttagcCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTGCAGCAGGAGGTGCGCTG-GCTAAGGGAAGAGCTACAAGCTCGAGGACCAGGAggtgagtacctacttggatccaaccactaggcctacacttatggaggctag Alignment from CESAR cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg gagtgaaacactttccaaggcctggcaatttttatatcttccatatttagcCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTGCAGCAGGAGGTGCGCTGGCTAAGGGAAGAGCTACAAGCTCGAGGACCAGGAggtgagtacctacttggatccaaccactaggcctacacttatggaggctag Alignment from Spaln_aa2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG gagtgaaacactttccaaggcctggcaatttttatatcttccatatttagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTGCAGCAGGAGGTGCGCTGGCTAAGGGAAGAGCTACAAGCTCGAGGACCAGGAGgtgagtacctacttggatccaaccactaggcctacacttatggaggctag Alignment from Spaln_nt2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG gagtgaaacactttccaaggcctggcaatttttatatcttccatatttagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTGCAGCAGGAGGTGCGCTGGCTAAGGGAAGAGCTACAAGCTCGAGGACCAGGAGgtgagtacctacttggatccaaccactaggcctacacttatggaggctag Alignment from Pairagon CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG gagtgaaacactttccaaggcctggcaatttttatatcttccatatttagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTGCAGCAGGAGGTGCGCTGGCTAAGGGAAGAGCTACAAGCTCGAGGACCAGGAGgtgagtacctacttggatccaaccactaggcctacacttatggaggctag Alignment from Exonerate_protein2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG gagtgaaacactttccaaggcctggcaatttttatatcttccatatttagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTGCAGCAGGAGGTGCGCTGGCTAAGGGAAGAGCTACAAGCTCGAGGACCAGGAGgtgagtacctacttggatccaaccactaggcctacacttatggaggctag Alignment from Exonerate_coding2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG gagtgaaacactttccaaggcctggcaatttttatatcttccatatttagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTGCAGCAGGAGGTGCGCTGGCTAAGGGAAGAGCTACAAGCTCGAGGACCAGGAGgtgagtacctacttggatccaaccactaggcctacacttatggaggctag Alignment from GeneWise CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG gagtgaaacactttccaaggcctggcaatttttatatcttccatatttagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTGCAGCAGGAGGTGCGCTGGCTAAGGGAAGAGCTACAAGCTCGAGGACCAGGAGgtgagtacctacttggatccaaccactaggcctacacttatggaggctag #### Cdc42bpg_ID1591_21 --> 2 - 0 Original Alignment atGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTG-TCCTTCTGGAACACAGAG agtcctgcagcagggcaatgggctcaggcaacagaatgtcatgtttgcagatGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCT-CTGGAACACAGAGgtaccttccacacagcgggtctagcaagtgtaaacagctgatgacaaaca Alignment from CESAR atGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtcctgcagcagggcaatgggctcaggcaacagaatgtcatgtttgcagatGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaccttccacacagcgggtctagcaagtgtaaacagctgatgacaaaca Alignment from Spaln_aa2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtcctgcagcagggcaatgggctcaggcaacagaatgtcatgtttgcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaccttccacacagcgggtctagcaagtgtaaacagctgatgacaaaca Alignment from Spaln_nt2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtcctgcagcagggcaatgggctcaggcaacagaatgtcatgtttgcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaccttccacacagcgggtctagcaagtgtaaacagctgatgacaaaca Alignment from Pairagon ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtcctgcagcagggcaatgggctcaggcaacagaatgtcatgtttgcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaccttccacacagcgggtctagcaagtgtaaacagctgatgacaaaca Alignment from Exonerate_protein2genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtcctgcagcagggcaatgggctcaggcaacagaatgtcatgtttgcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaccttccacacagcgggtctagcaagtgtaaacagctgatgacaaaca Alignment from Exonerate_coding2genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtcctgcagcagggcaatgggctcaggcaacagaatgtcatgtttgcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaccttccacacagcgggtctagcaagtgtaaacagctgatgacaaaca Alignment from GeneWise ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtcctgcagcagggcaatgggctcaggcaacagaatgtcatgtttgcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGCTCCTCTGGAACACAGAGgtaccttccacacagcgggtctagcaagtgtaaacagctgatgacaaaca #### Cdc42bpg_ID1595_25 --> 2 - 0 Original Alignment ccTGTGGCTACTTCTGTCACTCA-GCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC aagtcacattagtggactttggtcccccttgtccatttgtcttctttcagccTGTGGCTATTTCTGTCATTCACGCCTGTGCAT-ACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCCGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaagttgtgggggctgctgtcattgcctcctgtcccagGTACGACAGCC Alignment from CESAR ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC aagtcacattagtggactttggtcccccttgtccatttgtcttctttcagccTGTGGCTATTTCTGTCATTCACGCCTGTGCATACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCCGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaagttgtgggggctgggctgtgcatttccacccacagGTACGACAGCC Alignment from Spaln_aa2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC aagtcacattagtggactttggtcccccttgtccatttgtcttctttcagCCTGTGGCTATTTCTGTCATTCACGCCTGTGCATACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCCGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaagttgtgggggctgctgtcattgcctcctgtcccagGTACGACAGCC Alignment from Spaln_nt2Genome CCTGTGGCTACTTCTGTCACTCA-GCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC aagtcacattagtggactttggtcccccttgtccatttgtcttctttcagCCTGTGGCTATTTCTGTCATTCACGCCTGTGCAT-ACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCCGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaagttgtgggggctgctgtcattgcctcctgtcccagGTACGACAGCC Alignment from Pairagon CCTGTGGCTACTTCTGTCACTCA-GCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC aagtcacattagtggactttggtcccccttgtccatttgtcttctttcagCCTGTGGCTATTTCTGTCATTCACGCCTGTGCAT-ACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCCGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaagttgtgggggctgctgtcattgcctcctgtcccagGTACGACAGCC Alignment from Exonerate_protein2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC aagtcacattagtggactttggtcccccttgtccatttgtcttctttcagCCTGTGGCTATTTCTGTCATTCACGCCTGTGCATACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCCGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaagttgtgggggctgctgtcattgcctcctgtcccagGTACGACAGCC Alignment from Exonerate_coding2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC aagtcacattagtggactttggtcccccttgtccatttgtcttctttcagCCTGTGGCTATTTCTGTCATTCACGCCTGTGCATACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCCGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaagttgtgggggctgctgtcattgcctcctgtcccagGTACGACAGCC Alignment from GeneWise CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCGGTGCCG---------------------------------------CGGCC aagtcacattagtggactttggtcccccttgtccatttgtcttctttcagCCTGTGGCTATTTCTGTCATTCACGCCTGTGCATACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCCGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAGTAAGTTGTGGGGGCTGCTGTCATTGCCTCCTGTCCCAGGTACGACAGCC #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTC-CGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTCTGTCAgtgagatgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCATGTGTTCCGTTGGG-CTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAaggtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from CESAR GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTCTGTCAgtaagttgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCATGTGTTCCGTTGGGCTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAaggtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from Spaln_aa2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtgagatgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCATGTGTTCCGTTGGGCTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from Spaln_nt2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtgagatgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCATGTGTTCCGTTGGGCTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from Pairagon GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtgagatgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCATGTGTTCCGTTGGGCTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from Exonerate_protein2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtgagatgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCATGTGTTCCGTTGGGCTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from Exonerate_coding2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtgagatgtgggggctgggctgtgcatttccacccacagGTACGACAGCCATCATGTGTTCCGTTGGGCTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct Alignment from GeneWise GCTTCCTGTCG---------------------------------------GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAGTGAGATGTGGGGGCTGGGCTGTGCATTTCCACCCACAGGTACGACAGCCATCATGTGTTCCGTTGGGCTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTGCAGGCCTTAGATCTAAGgtgagggacaggcacacaggacatgggaagtccacaccagggtggtatct #### Cdc42bpg_ID1602_32 --> 0 - 1 Original Alignment GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTAC-CTCAGGAATCCATTGGCAg aggttgtgggctaggtgcattgggtgggggtgactgttggtggtttccagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCTTTATGGCACTGAAAAACTCCGCCTGACCTACCCTCA-AAATCCACTGGCAggtaagcgtacacaaccccagtctgtccatattcacctgtgtataggtgtg Alignment from CESAR GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAg aggttgtgggctaggtgcattgggtgggggtgactgttggtggtttccagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCTTTATGGCACTGAAAAACTCCGCCTGACCTACCCTCAAAATCCACTGGCAggtaagcgtacacaaccccagtctgtccatattcacctgtgtataggtgtg Alignment from Spaln_aa2Genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtgggctaggtgcattgggtgggggtgactgttggtggtttccagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCTTTATGGCACTGAAAAACTCCGCCTGACCTACCCTCAAAATCCACTGGCAGgtaagcgtacacaaccccagtctgtccatattcacctgtgtataggtgtg Alignment from Spaln_nt2Genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtgggctaggtgcattgggtgggggtgactgttggtggtttccagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCTTTATGGCACTGAAAAACTCCGCCTGACCTACCCTCAAAATCCACTGGCAGgtaagcgtacacaaccccagtctgtccatattcacctgtgtataggtgtg Alignment from Pairagon GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtgggctaggtgcattgggtgggggtgactgttggtggtttccagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCTTTATGGCACTGAAAAACTCCGCCTGACCTACCCTCAAAATCCACTGGCAGgtaagcgtacacaaccccagtctgtccatattcacctgtgtataggtgtg Alignment from Exonerate_protein2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtgggctaggtgcattgggtgggggtgactgttggtggtttccagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCTTTATGGCACTGAAAAACTCCGCCTGACCTACCCTCAAAATCCACTGGCAGgtaagcgtacacaaccccagtctgtccatattcacctgtgtataggtgtg Alignment from Exonerate_coding2genome GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtgggctaggtgcattgggtgggggtgactgttggtggtttccagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCTTTATGGCACTGAAAAACTCCGCCTGACCTACCCTCAAAATCCACTGGCAGgtaagcgtacacaaccccagtctgtccatattcacctgtgtataggtgtg Alignment from GeneWise GTGAGACCCCTGAATCCAGAAGGCTCCTTGTTCCTTTATGGCACCGAGAAGGTCCGCCTGACCTACCTCAGGAATCCATTGGCAG aggttgtgggctaggtgcattgggtgggggtgactgttggtggtttccagGTGAGACCCCTTAATCCAGAAGGCTCATTATTCCTTTATGGCACTGAAAAACTCCGCCTGACCTACCCTCAAAATCCACTGGCAGgtaagcgtacacaaccccagtctgtccatattcacctgtgtataggtgtg #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCC-GACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagaaAAGGATGAGTTTGAGATTCCTCGACCTGA-AGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTaggttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from CESAR agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagaaAAGGATGAGTTTGAGATTCCTCGACCTGAAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTaggttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGAAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGAAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Pairagon AGAAGGACGAGTTTGACATTCC-CGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGA-AGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGAAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGAAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTCGACCTGAAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTG-CGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccaggGAGATGCTGAAGGACCCCTTTGTGCCGCT-CAAATTCATCTCACCACCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccaggGAGATGCTGAAGGACCCCTTTGTGCCGCTCAAATTCATCTCACCACCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCCGCTCAAATTCATCTCACCACCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCCGCTCAAATTCATCTCACCACCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCCGCTCAAATTCATCTCACCACCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCCGCTCAAATTCATCTCACCACCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCCGCTCAAATTCATCTCACCACCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG gaatctgaagccagcccagcaccaacacctggctatctgtctgtgtccagGGAGATGCTGAAGGACCCCTTTGTGCCGCTCAAATTCATCTCACCACCCACCAACTTCATCCACCTGGTTCATGTGGGCCCTACAGAGGGAAGACCCAACACCAGGGATGGGACCCGGgtaagtcttgtgcaggtgattgctaaacatgccacagggcttcaatcatt #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCC-GGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTCGGACCGCAAC-GCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTCGGACCGCAACGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTCGGACCGCAACGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTCGGACCGCAACGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTC-CGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTCGGACCGCAAC-GCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTCGGACCGCAACGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTCGGACCGCAACGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTCGGACCGCAACGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt #### Cdca5_ID1428_2 --> 2 - 0 Original Alignment ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTC-CCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagggCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTTCAGACCTCCCCGAATTCAT-CTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from CESAR ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagggCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTTCAGACCTCCCCGAATTCATCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from Spaln_aa2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTTCAGACCTCCCCGAATTCATCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from Spaln_nt2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTTCAGACCTCCCCGAATTCATCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from Pairagon GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTTCAGACCTCCCCGAATTCATCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from Exonerate_protein2genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTTCAGACCTCCCCGAATTCATCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from Exonerate_coding2genome agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagggccaaggactttgctaactaagccttcagagtcatcaaagcgtaaatcgggttcagacctccccgaattcatctctgaaacctggcaaagggtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from GeneWise GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTTCAGACCTCCCCGAATTCATCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCT-GGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTCGGAT-TAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTCGGATTAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTCGGATTAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTCGGATTAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTCGGATTAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTCGGATTAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTCGGATTAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTCGGATTAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg #### Col17a1_ID10276_46 --> 2 - 1 Original Alignment gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAG-GAGCTACTGACCATGCTCCGAg accagagttctctggaagttcttcttactagcatctcttctttacctcaggtGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTGGAACATCCTATGAACGAGTTAC-GTCTATGCTTAAAggtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from CESAR gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg accagagttctctggaagttcttcttactagcatctcttctttacctcaggtGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTGGAACATCCTATGAACGAGTTACGTCTATGCTTAAAggtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Spaln_aa2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTGGAACATCCTATGAACGAGTTACGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Spaln_nt2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAG-GAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTGGAACATCCTATGAACGAGTTAC-GTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Pairagon GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG------------------ accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTGGAACATCCTATGAA------------------CGAGTTACGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Exonerate_protein2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTGGAACATCCTATGAACGAGTTACGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Exonerate_coding2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTGGAACATCCTATGAACGAGTTACGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from GeneWise GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTGGAACATCCTATGAACGAGTTACGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCC-GGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acagacacattgggctcattgactctaatgtcccatccccccatcaccaggaAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCT-AGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acagacacattgggctcattgactctaatgtcccatccccccatcaccaggaAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCTGGA---------GAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acagacacattgggctcattgactctaatgtcccatccccccatcaccagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCACAGTCCCTAGGGCCATTAGGCGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaggaatcaggattaacaacctcactgaggttgcctaagtagcctctt #### Col17a1_ID10301_21 --> 2 - 1 Original Alignment gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAG-GGACAAAAAGGCAGCATTg tacaacatcaagaggaaatccagagtagtgttgttgcttttgttttgtaggtATTCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGCGGAC-AAAAGGCAGCATTggtaagtgctcttgtccatctatgtgtatctccttgtgtatcctttccaac Alignment from CESAR gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg tacaacatcaagaggaaatccagagtagtgttgttgcttttgttttgtaggtATTCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGCGGACAAAAGGCAGCATTggtaagtgctcttgtccatctatgtgtatctccttgtgtatcctttccaac Alignment from Spaln_aa2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG tacaacatcaagaggaaatccagagtagtgttgttgcttttgttttgtagGTATTCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGCGGACAAAAGGCAGCATTGgtaagtgctcttgtccatctatgtgtatctccttgtgtatcctttccaac Alignment from Spaln_nt2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG tacaacatcaagaggaaatccagagtagtgttgttgcttttgttttgtagGTATTCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGCGGACAAAAGGCAGCATTGgtaagtgctcttgtccatctatgtgtatctccttgtgtatcctttccaac Alignment from Pairagon GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG tacaacatcaagaggaaatccagagtagtgttgttgcttttgttttgtagGTATTCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGCGGACAAAAGGCAGCATTGgtaagtgctcttgtccatctatgtgtatctccttgtgtatcctttccaac Alignment from Exonerate_protein2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG tacaacatcaagaggaaatccagagtagtgttgttgcttttgttttgtagGTATTCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGCGGACAAAAGGCAGCATTGgtaagtgctcttgtccatctatgtgtatctccttgtgtatcctttccaac Alignment from Exonerate_coding2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG tacaacatcaagaggaaatccagagtagtgttgttgcttttgttttgtagGTATTCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGCGGACAAAAGGCAGCATTGgtaagtgctcttgtccatctatgtgtatctccttgtgtatcctttccaac Alignment from GeneWise GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG tacaacatcaagaggaaatccagagtagtgttgttgcttttgttttgtagGTATTCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGCGGACAAAAGGCAGCATTGgtaagtgctcttgtccatctatgtgtatctccttgtgtatcctttccaac #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGAC-ACCTGCCTGAAGGCAGATGTGAATg aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagctTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACCACCT-TCTCAAGGCAGATGTGAATggtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagctTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACCACCTTCTCAAGGCAGATGTGAATggtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACCACCTTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACCACCTTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACCACCTTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACCACCTTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACCACCTTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACCACCTTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCT-CTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCCCCTGACAG-GCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTggtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACTCCCCCT---GACAGGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTggtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACTCCCCCT---GACAGGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from Spaln_nt2Genome GACCTCCCCTCTGACAG AGCCAGTAGTGGTGCTCGAGGGGCATACCAAG------CGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG AACCTCCCTCCTGACA-gtggacctgtctcttcctttctctcctgtccaggtttggcagatcccagaaaatgggttgactccccctgacagGCCAGTAGTTGT-GCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from Pairagon TGACCTCCCCTCTGACAG------------------------------------------------------------------------AGCCAGTAGTGGTGCTCGAGGGGCATACCA------AGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG CAACCTCCCTCCTGACAGTGGACCTGTCTCTTCCTTTCTCTCCTGTCCAGGTTTGGCAGATCCCAGAAAATGGGTTGACTCCCCCTGACAGGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACTCCCCCT---GACAGGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACTCCCCCT---GACAGGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACTCCCCCT---GACAGGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTG-TACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcaggtTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGCTACCGTT-GGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcaggtTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGCTACCGTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGCTACCGTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGCTACCGTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTG-TACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGCTACCGT-TGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGCTACCGTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGCTACCGTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGCTACCGTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTC-AGCAAGTGTGAAATTGCCag aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCC---CACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCCAGCA-GTGTGAAATAGCCaggtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCCAGCAGTGTGAAATAGCCaggtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCCAGCAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCCAGCAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCCAGCAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCCAGCAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCCAGCAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCC---CACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCCAGCAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCG-CTGGCGCTCGGAGTGACGTGCAGGag acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACCTGGTGCTCG-AGTGACTTGTAGGaggtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACCTGGTGCTCGAGTGACTTGTAGGaggtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACCTGGTGCTCGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGC-TGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACCTGGTGCTC-GAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCG-CTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACCTGGTGCTC-GAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACCTGGTGCTCGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACCTGGTGCTCGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACCTGGTGCTCGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAG-ACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGCACCCGCC-CACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCggtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGCACCCGCCCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCggtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGCACCCGCCCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAG-ACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGCACCCGCC-CACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGCACCCGCCCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGCACCCGCCCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGCACCCGCCCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGCACCCGCCCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCA-GGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCACGGAA-CACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from CESAR AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCACGGAACACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCACGGAACACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Spaln_nt2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCACGGAACACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Pairagon AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCACGGAACACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Exonerate_protein2genome atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagagcgcagaaccacggaacacaccccggcaggtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Exonerate_coding2genome atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagagcgcagaaccacggaacacaccccggcaggtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from GeneWise AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCACGGAACACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCC-GGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ctttctataacctcattgctgtctctgataccccctttaccggctcatagaGGTCATGATGTGGCACGCTGCATGGCTGATCCTCGGGGATG-TGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTAACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCggtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ctttctataacctcattgctgtctctgataccccctttaccggctcatagaGGTCATGATGTGGCACGCTGCATGGCTGATCCTCGGGGATGTGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTAACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCggtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTCGGGGATGTGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTAACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCC-CGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTCGGGGATG-TGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTAACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGA-CCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTCGGGGATG-TGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTAACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTCGGGGATGTGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTAACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from Exonerate_coding2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTCGGGGATGTGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTAACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTCGGGGATGTGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTAACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATG-ATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGCATGG-ACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAggtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGCATGGACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAggtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGCATGGACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGCATGGACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGCATGGACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGCATGGACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGCATGGACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGCATGGACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAAC-GTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ttgctaccaaggcactctaccaaggcaggaagttgttttatctgttgtagccCCAACCACACCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCCTGCGACACTGCTGCAGGGAATCGTCATGGTGA-GTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtaaagggggctagtatgagagggccatgccccataatgatgtcatgccc Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ttgctaccaaggcactctaccaaggcaggaagttgttttatctgttgtagccCCAACCACACCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCCTGCGACACTGCTGCAGGGAATCGTCATGGTGAGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtaaagggggctagtatgagagggccatgccccataatgatgtcatgccc Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ttgctaccaaggcactctaccaaggcaggaagttgttttatctgttgtagCCCCAACCACACCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCCTGCGACACTGCTGCAGGGAATCGTCATGGTGAGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtaaagggggctagtatgagagggccatgccccataatgatgtcatgccc Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAA-CGTCACGGTGACGTCATGCACCGTGAC------CTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ttgctaccaaggcactctaccaaggcaggaagttgttttatctgttgtagCCCCAACCACACCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCCTGCGACACTGCTGCAGGGAATCGTCATGGTGA-GTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtaaagggggctagtatgagagggccatgccccataatgatgtcatgccc Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAA-CGTCACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ttgctaccaaggcactctaccaaggcaggaagttgttttatctgttgtagCCCCAACCACACCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCCTGCGACACTGCTGCAGGGAATCGTCATGGTGA-GTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtaaagggggctagtatgagagggccatgccccataatgatgtcatgccc Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ttgctaccaaggcactctaccaaggcaggaagttgttttatctgttgtagCCCCAACCACACCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCCTGCGACACTGCTGCAGGGAATCGTCATGGTGAGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtaaagggggctagtatgagagggccatgccccataatgatgtcatgccc Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ttgctaccaaggcactctaccaaggcaggaagttgttttatctgttgtagCCCCAACCACACCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCCTGCGACACTGCTGCAGGGAATCGTCATGGTGAGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtaaagggggctagtatgagagggccatgccccataatgatgtcatgccc Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ttgctaccaaggcactctaccaaggcaggaagttgttttatctgttgtagCCCCAACCACACCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGACCTGGGCCTGCGACACTGCTGCAGGGAATCGTCATGGTGAGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTATCAgtaaagggggctagtatgagagggccatgccccataatgatgtcatgccc #### Cst6_ID938_2 --> 0 - 0 Original Alignment CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACC-TGCCCTCTGGCTGCAGGGGGGCAGCAGGAG ggaatagcttaacagtaaaagctaactaaagttaattcatttcctttcagCTGGTGGCTGGCATTGAGTACCACCTAACCCTGGACATTGAGAGCACAAAGTGCCGAAAGACCAAACTCTCCGGCAAACACATGGACCTCACTACCCTGCCCAT-GGCTGCAGGGGGACAGCAAGAGgtaaagacactaatcttgtctcaaccccattcaaggtttcaggcccttag Alignment from CESAR CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG ggaatagcttaacagtaaaagctaactaaagttaattcatttcctttcagCTGGTGGCTGGCATTGAGTACCACCTAACCCTGGACATTGAGAGCACAAAGTGCCGAAAGACCAAACTCTCCGGCAAACACATGGACCTCACTACCCTGCCCATGGCTGCAGGGGGACAGCAAGAGgtaaagacactaatcttgtctcaaccccattcaaggtttcaggcccttag Alignment from Spaln_aa2Genome CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG ggaatagcttaacagtaaaagctaactaaagttaattcatttcctttcagCTGGTGGCTGGCATTGAGTACCACCTAACCCTGGACATTGAGAGCACAAAGTGCCGAAAGACCAAACTCTCCGGCAAACACATGGACCTCACTACCCTGCCCATGGCTGCAGGGGGACAGCAAGAGgtaaagacactaatcttgtctcaaccccattcaaggtttcaggcccttag Alignment from Spaln_nt2Genome CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG ggaatagcttaacagtaaaagctaactaaagttaattcatttcctttcagCTGGTGGCTGGCATTGAGTACCACCTAACCCTGGACATTGAGAGCACAAAGTGCCGAAAGACCAAACTCTCCGGCAAACACATGGACCTCACTACCCTGCCCATGGCTGCAGGGGGACAGCAAGAGgtaaagacactaatcttgtctcaaccccattcaaggtttcaggcccttag Alignment from Pairagon CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG ggaatagcttaacagtaaaagctaactaaagttaattcatttcctttcagCTGGTGGCTGGCATTGAGTACCACCTAACCCTGGACATTGAGAGCACAAAGTGCCGAAAGACCAAACTCTCCGGCAAACACATGGACCTCACTACCCTGCCCATGGCTGCAGGGGGACAGCAAGAGgtaaagacactaatcttgtctcaaccccattcaaggtttcaggcccttag Alignment from Exonerate_protein2genome CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG ggaatagcttaacagtaaaagctaactaaagttaattcatttcctttcagCTGGTGGCTGGCATTGAGTACCACCTAACCCTGGACATTGAGAGCACAAAGTGCCGAAAGACCAAACTCTCCGGCAAACACATGGACCTCACTACCCTGCCCATGGCTGCAGGGGGACAGCAAGAGgtaaagacactaatcttgtctcaaccccattcaaggtttcaggcccttag Alignment from Exonerate_coding2genome CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG ggaatagcttaacagtaaaagctaactaaagttaattcatttcctttcagCTGGTGGCTGGCATTGAGTACCACCTAACCCTGGACATTGAGAGCACAAAGTGCCGAAAGACCAAACTCTCCGGCAAACACATGGACCTCACTACCCTGCCCATGGCTGCAGGGGGACAGCAAGAGgtaaagacactaatcttgtctcaaccccattcaaggtttcaggcccttag Alignment from GeneWise CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG ggaatagcttaacagtaaaagctaactaaagttaattcatttcctttcagCTGGTGGCTGGCATTGAGTACCACCTAACCCTGGACATTGAGAGCACAAAGTGCCGAAAGACCAAACTCTCCGGCAAACACATGGACCTCACTACCCTGCCCATGGCTGCAGGGGGACAGCAAGAGgtaaagacactaatcttgtctcaaccccattcaaggtttcaggcccttag #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAAT-GATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATCGATCCCTTGG-GTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATCGATCCCTTGGGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATCGATCCCTTGGGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATCGATCCCTTGGGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAAT-GATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATCGATCCCTTGG-GTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATCGATCCCTTGGGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATCGATCCCTTGGGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATCGATCCCTTGGGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACT-TTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atacccaagtaaaatctggccataaataggccacaccattccatctgcagagTTTCGAAATGCAACCCCTTGGCT-ATTCCTACCACTGCTGGACAAAGATCCCCTGCCCCAGgtaggtacactgttatgtggggagacagcacctccttaattctggttccc Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atacccaagtaaaatctggccataaataggccacaccattccatctgcagagTTTCGAAATGCAACCCCTTGGCTATTCCTACCACTGCTGGACAAAGATCCCCTGCCCCAGgtaggtacactgttatgtggggagacagcacctccttaattctggttccc Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atacccaagtaaaatctggccataaataggccacaccattccatctgcagAGTTTCGAAATGCAACCCCTTGGCTATTCCTACCACTGCTGGACAAAGATCCCCTGCCCCAGgtaggtacactgttatgtggggagacagcacctccttaattctggttccc Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atacccaagtaaaatctggccataaataggccacaccattccatctgcagAGTTTCGAAATGCAACCCCTTGGCTATTCCTACCACTGCTGGACAAAGATCCCCTGCCCCAGgtaggtacactgttatgtggggagacagcacctccttaattctggttccc Alignment from Pairagon AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atacccaagtaaaatctggccataaataggccacaccattccatctgcagAGTTTCGAAATGCAACCCCTTGGCTATTCCTACCACTGCTGGACAAAGATCCCCTGCCCCAGgtaggtacactgttatgtggggagacagcacctccttaattctggttccc Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atacccaagtaaaatctggccataaataggccacaccattccatctgcagAGTTTCGAAATGCAACCCCTTGGCTATTCCTACCACTGCTGGACAAAGATCCCCTGCCCCAGgtaggtacactgttatgtggggagacagcacctccttaattctggttccc Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atacccaagtaaaatctggccataaataggccacaccattccatctgcagAGTTTCGAAATGCAACCCCTTGGCTATTCCTACCACTGCTGGACAAAGATCCCCTGCCCCAGgtaggtacactgttatgtggggagacagcacctccttaattctggttccc Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atacccaagtaaaatctggccataaataggccacaccattccatctgcagAGTTTCGAAATGCAACCCCTTGGCTATTCCTACCACTGCTGGACAAAGATCCCCTGCCCCAGgtaggtacactgttatgtggggagacagcacctccttaattctggttccc #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTG-TTGCTGGTGGGCTATGGCAACc gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGCTTGC-CGTAGGCCATGGCAACcgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from CESAR TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGCTTGCCGTAGGCCATGGCAACcgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGCTTGCCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGCTTGCCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from Pairagon TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGCTTGCCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGCTTGCCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGCTTGCCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGCTTGCCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc #### Ctsw_ID1020_6 --> 2 - 1 Original Alignment agCTGCTGGACTGCGAACGCTGTGGAAATGGT-TGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa tccctgcctgcctgtggcaattaggcccttttttcccctccttgggtcagagCTTTTGGACTGTGAGCACTGTGGCAATGGCCTGCAATG-TGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATagtaatgtcctacgcctaacaggagatgagtagggcaagtgagtgctcagc Alignment from CESAR agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa tccctgcctgcctgtggcaattaggcccttttttcccctccttgggtcagagCTTTTGGACTGTGAGCACTGTGGCAATGGCCTGCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATagtaatgtcctacgcctaacaggagatgagtagggcaagtgagtgctcagc Alignment from Spaln_aa2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tccctgcctgcctgtggcaattaggcccttttttcccctccttgggtcagAGCTTTTGGACTGTGAGCACTGTGGCAATGGCCTGCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaatgtcctacgcctaacaggagatgagtagggcaagtgagtgctcagc Alignment from Spaln_nt2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGT-TGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tccctgcctgcctgtggcaattaggcccttttttcccctccttgggtcagAGCTTTTGGACTGTGAGCACTGTGGCAATGGCCTGCAAT-GTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaatgtcctacgcctaacaggagatgagtagggcaagtgagtgctcagc Alignment from Pairagon AGCTGCTGGACTGCGAACGCTGTGGAAATGG-TTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tccctgcctgcctgtggcaattaggcccttttttcccctccttgggtcagAGCTTTTGGACTGTGAGCACTGTGGCAATGGCCTGCAAT-GTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaatgtcctacgcctaacaggagatgagtagggcaagtgagtgctcagc Alignment from Exonerate_protein2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tccctgcctgcctgtggcaattaggcccttttttcccctccttgggtcagAGCTTTTGGACTGTGAGCACTGTGGCAATGGCCTGCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaatgtcctacgcctaacaggagatgagtagggcaagtgagtgctcagc Alignment from Exonerate_coding2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tccctgcctgcctgtggcaattaggcccttttttcccctccttgggtcagAGCTTTTGGACTGTGAGCACTGTGGCAATGGCCTGCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaatgtcctacgcctaacaggagatgagtagggcaagtgagtgctcagc Alignment from GeneWise AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tccctgcctgcctgtggcaattaggcccttttttcccctccttgggtcagAGCTTTTGGACTGTGAGCACTGTGGCAATGGCCTGCAATGTGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaatgtcctacgcctaacaggagatgagtagggcaagtgagtgctcagc #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCA-GCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCACGCTG-TGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCACGCTGTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Spaln_aa2Genome GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCACGCTGTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Spaln_nt2Genome GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCACGCTGTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Pairagon GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCACGCTGTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagagaagttgcaaccatttccctggcccaTGGATCGGTGTATGCTGCTGGGCCATGGCACGCTGTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagagaagttgcaaccatttccctggcccaTGGATCGGTGTATGCTGCTGGGCCATGGCACGCTGTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from GeneWise GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCACGCTGTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAG-TTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctcttgataccgatgtataatggttctttccagagGAGGAGTTTGGCCAACTTAT-TGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTGAAGCGAAGAACATCATCTCATCAATCAAGAATCAGgtaaccgccctgcctcagtttgggctaatccaacccaaggacaacacact Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctcttgataccgatgtataatggttctttccagagGAGGAGTTTGGCCAACTTATTGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTGAAGCGAAGAACATCATCTCATCAATCAAGAATCAGgtaaccgccctgcctcagtttgggctaatccaacccaaggacaagtgaac Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctcttgataccgatgtataatggttctttccagAGGAGGAGTTTGGCCAACTTATTGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTGAAGCGAAGAACATCATCTCATCAATCAAGAATCAGgtaaccgccctgcctcagtttgggctaatccaacccaaggacaacacact Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctcttgataccgatgtataatggttctttccagAGGAGGAGTTTGGCCAACTTATTGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTGAAGCGAAGAACATCATCTCATCAATCAAGAATCAGgtaaccgccctgcctcagtttgggctaatccaacccaaggacaacacact Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctcttgataccgatgtataatggttctttccagAGGAGGAGTTTGGCCAACTTATTGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTGAAGCGAAGAACATCATCTCATCAATCAAGAATCAGgtaaccgccctgcctcagtttgggctaatccaacccaaggacaacacact Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctcttgataccgatgtataatggttctttccagAGGAGGAGTTTGGCCAACTTATTGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTGAAGCGAAGAACATCATCTCATCAATCAAGAATCAGgtaaccgccctgcctcagtttgggctaatccaacccaaggacaacacact Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctcttgataccgatgtataatggttctttccagAGGAGGAGTTTGGCCAACTTATTGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTGAAGCGAAGAACATCATCTCATCAATCAAGAATCAGgtaaccgccctgcctcagtttgggctaatccaacccaaggacaacacact Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctcttgataccgatgtataatggttctttccagAGGAGGAGTTTGGCCAACTTATTGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTGAAGCGAAGAACATCATCTCATCAATCAAGAATCAGgtaaccgccctgcctcagtttgggctaatccaacccaaggacaacacact #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCT-TTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGG-AATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtctgacct Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtttcattt Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtctgacct Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtctgacct Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGC-TTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGA-ATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtctgacct Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtctgacct Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtctgacct Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCACTTCGAGGAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtctgacct #### Cyp26a1_ID7418_6 --> 0 - 0 Original Alignment GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTA-GACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGCGACATGGAAA-TTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from CESAR GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGCGACATGGAAATTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from Spaln_aa2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGCGACATGGAAATTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from Spaln_nt2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGCGACATGGAAATTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from Pairagon GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTA-GACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGCGACATGGAAA-TTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from Exonerate_protein2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGCGACATGGAAATTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from Exonerate_coding2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGCGACATGGAAATTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from GeneWise GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGCGACATGGAAATTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGC-CTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcaggcCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCCTTGTTG-GGAACTTAGGAAGACCAATtgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcaggcCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCCTTGTTGGGAACTTAGGAAGACCAATtgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCCTTGTTGGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCCTTGTTGGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTG-CCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCCTTGTTG-GGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCCTTGTTGGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCCTTGTTGGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCCTTGTTGGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAA-AACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agagaatgtgtgagcccaattccagctatccctgctccttcccacttcaggaATTATATTCAGTAAGGGAAATGTGTGGAAACAACATAAGGC-CTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agagaatgtgtgagcccaattccagctatccctgctccttcccacttcaggaATTATATTCAGTAAGGGAAATGTGTGGAAACAACATAAGGCCTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAACAACATAAGGCCTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAA-AACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAACAACATAAGGC-CTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAA-AACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAACAACATAAGGC-CTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAACAACATAAGGCCTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAACAACATAAGGCCTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAACAACATAAGGCCTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGT-GTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggttaactctgtaactaataattttttgcttataggtATTGGATTTAGCAATGGAACTCGTATGGAAGA-CACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggttaactctgtaactaataattttttgcttataggtATTGGATTTAGCAATGGAACTCGTATGGAAGACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTCGTATGGAAGACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGT-GTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTCGTATGG-AAGACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from Pairagon GCATTGGATTTAGTAATGGAAGT-GTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTCGTATGG-AAGACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTCGTATGGAAGACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTCGTATGGAAGACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact Alignment from GeneWise --ATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggttaactctgtaactaataattttttgcttatagGTATTGGATTTAGCAATGGAACTCGTATGGAAGACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGTATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtagggcaaaggtatagaaggaaggtgaccaactaggtcttgcaaatact #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA-GCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAACGCTC-TGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAACGCTCTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAACGCTCTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAACGCTCTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA-GCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAACGCTCT-GTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAACGCTCTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAACGCTCTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAACGCTCTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAG-AAAAAAAGAAAACGCTCCAAAAAAg tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGCAAAA-AAGAAAGCGCTCCAAAAAGggtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGCAAAAAAGAAAGCGCTCCAAAAAGggtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGCAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGCAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGCAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGCAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGGCAAATTGAAGAATGAAAAGGAATCTCA tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGCAAAAAAGAAAGCGCTCCAAAAAGGGTACGTACTCTTAAATCCTTAAATCTAGcttaggatgttggataggctta Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGCAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta #### Dagla_ID2759_11 --> 0 - 0 Original Alignment GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGC-ACCTGGTTGGGCCACAAG tggtgtacttcttttggacccccacttatgtttgccttcatgttctccagGACGCCCTAACCGACCTGACAGGTGATGCTGAGCGCCTTCCTGCAGAGGCACACAGAGGCCACCT-GTTGGGCCACAAGgtagctagttcactgaggttcccccacctcgctcttctcctgctagggct Alignment from CESAR GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggacccccacttatgtttgccttcatgttctccagGACGCCCTAACCGACCTGACAGGTGATGCTGAGCGCCTTCCTGCAGAGGCACACAGAGGCCACCTGTTGGGCCACAAGgtagctagttcactgaggttcccccacctcgctcttctcctgctagggct Alignment from Spaln_aa2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggacccccacttatgtttgccttcatgttctccagGACGCCCTAACCGACCTGACAGGTGATGCTGAGCGCCTTCCTGCAGAGGCACACAGAGGCCACCTGTTGGGCCACAAGgtagctagttcactgaggttcccccacctcgctcttctcctgctagggct Alignment from Spaln_nt2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggacccccacttatgtttgccttcatgttctccagGACGCCCTAACCGACCTGACAGGTGATGCTGAGCGCCTTCCTGCAGAGGCACACAGAGGCCACCTGTTGGGCCACAAGgtagctagttcactgaggttcccccacctcgctcttctcctgctagggct Alignment from Pairagon GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggacccccacttatgtttgccttcatgttctccagGACGCCCTAACCGACCTGACAGGTGATGCTGAGCGCCTTCCTGCAGAGGCACACAGAGGCCACCTGTTGGGCCACAAGgtagctagttcactgaggttcccccacctcgctcttctcctgctagggct Alignment from Exonerate_protein2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggacccccacttatgtttgccttcatgttctccagGACGCCCTAACCGACCTGACAGGTGATGCTGAGCGCCTTCCTGCAGAGGCACACAGAGGCCACCTGTTGGGCCACAAGgtagctagttcactgaggttcccccacctcgctcttctcctgctagggct Alignment from Exonerate_coding2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggacccccacttatgtttgccttcatgttctccagGACGCCCTAACCGACCTGACAGGTGATGCTGAGCGCCTTCCTGCAGAGGCACACAGAGGCCACCTGTTGGGCCACAAGgtagctagttcactgaggttcccccacctcgctcttctcctgctagggct Alignment from GeneWise GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggacccccacttatgtttgccttcatgttctccagGACGCCCTAACCGACCTGACAGGTGATGCTGAGCGCCTTCCTGCAGAGGCACACAGAGGCCACCTGTTGGGCCACAAGgtagctagttcactgaggttcccccacctcgctcttctcctgctagggct #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAG-AAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAG-GGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from CESAR GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from Spaln_aa2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from Spaln_nt2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from Pairagon GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from Exonerate_protein2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from Exonerate_coding2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from GeneWise GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGC-CCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCCAGGGGCCA-CCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCCAGGGGCCACCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCCAGGGGCCACCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCCAGGGGCCACCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCCAGGGGCCACCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCCAGGGGCCACCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCCAGGGGCCACCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCCAGGGGCCACCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAA-GGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatttttttcttccttcctcccagccATCCAGGGGTGGTTGAAGGAGCGGCCCAT-TCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtggggaagaacagttcttaggaaacaacttgatgagtagggttgcaagc Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatttttttcttccttcctcccagccATCCAGGGGTGGTTGAAGGAGCGGCCCATTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtggggaagaacagttcttaggaaacaacttgatgagtagggttgcaagc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatttttttcttccttcctcccagCCATCCAGGGGTGGTTGAAGGAGCGGCCCATTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtggggaagaacagttcttaggaaacaacttgatgagtagggttgcaagc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAA-GGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatttttttcttccttcctcccagCCATCCAGGGGTGGTTGAAGGAGCGGCCCAT-TCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtggggaagaacagttcttaggaaacaacttgatgagtagggttgcaagc Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatttttttcttccttcctcccagCCATCCAGGGGTGGTTGAAGGAGCGGCCCATTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtggggaagaacagttcttaggaaacaacttgatgagtagggttgcaagc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatttttttcttccttcctcccagCCATCCAGGGGTGGTTGAAGGAGCGGCCCATTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtggggaagaacagttcttaggaaacaacttgatgagtagggttgcaagc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatttttttcttccttcctcccagCCATCCAGGGGTGGTTGAAGGAGCGGCCCATTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtggggaagaacagttcttaggaaacaacttgatgagtagggttgcaagc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatttttttcttccttcctcccagCCATCCAGGGGTGGTTGAAGGAGCGGCCCATTCTGACCAGCCCCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtggggaagaacagttcttaggaaacaacttgatgagtagggttgcaagc #### Dak_ID2901_12 --> 2 - 1 Original Alignment gtGTAACATCAAAGCAGATGGCACTTGTGCTGGAT-CGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg gcttggtaaaccttttctcagctgctagactctggttctttttctcttaggtGTAACATCAAAGCAGATAGCACTGGTG---TATCCGGATAT-CACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAggtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from CESAR gtGTAACATCAAAGCAGATGGCACTTGTG---CTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg gcttggtaaaccttttctcagctgctagactctggttctttttctcttaggtGTAACATCAAAGCAGATAGCACTGGTGTATCCGGAT---ATC---ACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAggtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Spaln_aa2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTATCCGGATATC---ACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Spaln_nt2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATC-GGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCAC---TGGTGTATCCGGATAT-CACCACCCTCATTGGAGCTGAAGAGCACCTGAACGC---AGATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Pairagon GTGTAACATCAAAGCAGATGGCACTTGTG---CTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTATC-----CGGATAT-CACCACCCTCATTGGAGCTGAAGAGCACCTGAACGC---AGATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Exonerate_protein2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTATCCGGATATC---ACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Exonerate_coding2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTATCCGGATATC---ACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from GeneWise GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTATCCGGATATC---ACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCC-ACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgctgccacccacaaaattaccatccccatccctgcatctgttacataggtACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCCACACACACTT-CGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGggtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC---TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgctgccacccacaaaattaccatccccatccctgcatctgttacataggtACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGC---ACCCACACACACTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGggtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCCACACACACTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCCACACACACTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Pairagon GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACAC-CTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACC-CACACACACTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCCACACACACTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCCACACACACTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC---TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGC---ACCCACACACACTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag #### Ddb1_ID2924_9 --> 0 - 0 Original Alignment CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTT-ACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACAAGGCTCCTATGTAGTGGCAATGGAAACATTTCACCAATT-AGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from CESAR CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACAAGGCTCCTATGTAGTGGCAATGGAAACATTTCACCAATTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from Spaln_aa2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACAAGGCTCCTATGTAGTGGCAATGGAAACATTTCACCAATTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from Spaln_nt2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACAAGGCTCCTATGTAGTGGCAATGGAAACATTTCACCAATTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from Pairagon CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACAAGGCTCCTATGTAGTGGCAATGGAAACATTTCACCAATTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from Exonerate_protein2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACAAGGCTCCTATGTAGTGGCAATGGAAACATTTCACCAATTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from Exonerate_coding2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACAAGGCTCCTATGTAGTGGCAATGGAAACATTTCACCAATTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc Alignment from GeneWise CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattagggattctttaaggctactgtgcgtcttctcctgcgcagCTCAATGTCGATAGCAATGAACAAGGCTCCTATGTAGTGGCAATGGAAACATTTCACCAATTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtaggcagggtcccctatggcactgtgtttccgcttctgtgatttcatcc #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAAT-GGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagcCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATCGGCCTCTCCC-GCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtacttctattagtacttccaggtcaaagccctagtaagggaaacttttg Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagcCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATCGGCCTCTCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtacttctattagtacttccaggtcaaagccctagtaaggtgtctgtctt Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATCGGCCTCTCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaagggaaacttttg Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATCGGCCTCTCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaagggaaacttttg Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAAT-GGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATCGGCCTCT-CCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaagggaaacttttg Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATCGGCCTCTCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaagggaaacttttg Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATCGGCCTCTCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaagggaaacttttg Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCATTAGGGGATAGCAATCGGCCTCTCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaagggaaacttttg #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTT-TGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTCTGTGCCT-GGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAggtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTCTGTGCCTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAggtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTCTGTGCCTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTCTGTGCCTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTT-TGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTCTGTGCC-TGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTCTGTGCCTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTCTGTGCCTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG gtacttccaggtcaaagccctagtaaggtgtctgtcttgtggacctccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTCTGTGCCTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtgaggctaaacattgttttagtgctgggttttttcagaaataaggagcc #### Ddb1_ID2932_17 --> 1 - 2 Original Alignment tCTGGCATTGGCCAAT-AACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagtCTGGCATTGGCCAATCAACA-TACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTaggtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from CESAR tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagtCTGGCATTGGCCAATCAACATACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTaggtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from Spaln_aa2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATCAACATACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from Spaln_nt2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATCAACATACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from Pairagon TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATCAACATACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from Exonerate_protein2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATCAACATACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from Exonerate_coding2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATCAACATACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from GeneWise TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATCAACATACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTG-GTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg atggggtcggaagccaatacccgtaaccatggctgctctttgtctttcagtgCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGCGTCT-CTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATggtgggtcatcagtctctggggtatgaaagatgtaaatttcagcggagaca Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg atggggtcggaagccaatacccgtaaccatggctgctctttgtctttcagtgCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGCGTCTCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATggtgggtcatcagtctctggggtatgaaagatgtaaatttcagcggagaca Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG atggggtcggaagccaatacccgtaaccatggctgctctttgtctttcagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGCGTCTCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgggtcatcagtctctggggtatgaaagatgtaaatttcagcggagaca Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG atggggtcggaagccaatacccgtaaccatggctgctctttgtctttcagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGCGTCTCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgggtcatcagtctctggggtatgaaagatgtaaatttcagcggagaca Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG atggggtcggaagccaatacccgtaaccatggctgctctttgtctttcagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGCGTCTCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgggtcatcagtctctggggtatgaaagatgtaaatttcagcggagaca Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG atggggtcggaagccaatacccgtaaccatggctgctctttgtctttcagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGCGTCTCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgggtcatcagtctctggggtatgaaagatgtaaatttcagcggagaca Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG atggggtcggaagccaatacccgtaaccatggctgctctttgtctttcagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGCGTCTCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgggtcatcagtctctggggtatgaaagatgtaaatttcagcggagaca Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG atggggtcggaagccaatacccgtaaccatggctgctctttgtctttcagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGCGTCTCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGTACAGCCATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgggtcatcagtctctggggtatgaaagatgtaaatttcagcggagaca #### Ddb1_ID2936_21 --> 2 - 0 Original Alignment gaAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGA-GCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcaggaAAACTACAGACTGTCGCTGATAAGGAAGTAAAAGGGCGCTGTGTACT-CATGGTGGAGTTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from CESAR gaAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGA-GCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcaggaAAACTACAGACTGTCGCTGATAAGGAAGTAAAAGGGCGCTGTGTACT-CATGGTGGAGTTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from Spaln_aa2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGGAAGTAAAAGGGCGCTGTGTACTCATGGTGGAGTTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from Spaln_nt2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGGAAGTAAAAGGGCGCTGTGTACTCATGGTGGAGTTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from Pairagon GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGA-GCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGGAAGTAAAAGGGCGCTGTGTACTC-ATGGTGGAGTTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from Exonerate_protein2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGGAAGTAAAAGGGCGCTGTGTACTCATGGTGGAGTTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from Exonerate_coding2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGGAAGTAAAAGGGCGCTGTGTACTCATGGTGGAGTTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc Alignment from GeneWise GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG agggcacccagggaaaggtctactaaggtgatgctctacctctcatgcagGAAAACTACAGACTGTCGCTGATAAGGAAGTAAAAGGGCGCTGTGTACTCATGGTGGAGTTTAATGGGAAACTGTTGGCCAGCACCAATAGTACAgtatgctatgggggtttacatgtttgtggattggtttttctcttctaagc #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTT-CCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacaggaATATGCATGCCCTCTGAGCATAGCCACTTCCCCACGAG-GGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAggtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacaggaATATGCATGCCCTCTGAGCATAGCCACTTCCCCACGAGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAggtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCCACGAGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCCACGAGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCCACGAGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCCACGAGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCCACGAGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCCACGAGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac #### Dkk1_ID6483_2 --> 0 - 1 Original Alignment CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGT-CTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg aggttgctaactaatctgatcgaggtgtctgggtctatgtgtttattcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCCTTGGCTT-CCGAAAGCACAGGAAGTGTTGCGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACcgtgagtattggccccagttttgatttagtacaatcttgcctttgagaaca Alignment from CESAR CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg aggttgctaactaatctgatcgaggtgtctgggtctatgtgtttattcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCCTTGGCTTCCGAAAGCACAGGAAGTGTTGCGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACcgtgagtattggccccagttttgatttagtacaatcttgcctttgagaaca Alignment from Spaln_aa2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcgaggtgtctgggtctatgtgtttattcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCCTTGGCTTCCGAAAGCACAGGAAGTGTTGCGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtgagtattggccccagttttgatttagtacaatcttgcctttgagaaca Alignment from Spaln_nt2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcgaggtgtctgggtctatgtgtttattcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGC---TGTTGAAGGTGTTCAGATCTGCCTTGGCTTCCGAAAGCACAGGAAGTGTTGCGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtgagtattggccccagttttgatttagtacaatcttgcctttgagaaca Alignment from Pairagon CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcgaggtgtctgggtctatgtgtttattcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGC---TGTTGAAGGTGTTCAGATCTGCCTTGGCTTCCGAAAGCACAGGAAGTGTTGCGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtgagtattggccccagttttgatttagtacaatcttgcctttgagaaca Alignment from Exonerate_protein2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcgaggtgtctgggtctatgtgtttattcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCCTTGGCTTCCGAAAGCACAGGAAGTGTTGCGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtgagtattggccccagttttgatttagtacaatcttgcctttgagaaca Alignment from Exonerate_coding2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcgaggtgtctgggtctatgtgtttattcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCCTTGGCTTCCGAAAGCACAGGAAGTGTTGCGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtgagtattggccccagttttgatttagtacaatcttgcctttgagaaca Alignment from GeneWise CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aggttgctaactaatctgatcgaggtgtctgggtctatgtgtttattcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCCTTGGCTTCCGAAAGCACAGGAAGTGTTGCGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtgagtattggccccagttttgatttagtacaatcttgcctttgagaaca #### Dock8_ID5413_32 --> 0 - 1 Original Alignment GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGA-GACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGACGACGTCA-GGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from CESAR GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGACGACGTCAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from Spaln_aa2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGACGACGTCAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from Spaln_nt2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGACGACGTCAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from Pairagon GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGA-GACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGACGACGTC-AGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from Exonerate_protein2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGACGACGTCAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from Exonerate_coding2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGACGACGTCAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg Alignment from GeneWise GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagccctagtaaactaaatgtcccaaccgttctctctacccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGACGACGTCAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagtgtacattccagcattatatccccaagttattcaaggtgctactg #### Dpf2_ID1309_5 --> 0 - 0 Original Alignment CGGATCATTGAACCCGATGACTTCCTTGAT-GACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG gattcggctgtgtttgagctatacttgtagccattttgttcaccttacagCGAGTCATTGAACCCGATGACTTCTTTGATCGACCTGG-TGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtaagtgccttatctctctttttattgtgggttcagAGTAAGGGTGTTAG Alignment from CESAR CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG gattcggctgtgtttgagctatacttgtagccattttgttcaccttacagCGAGTCATTGAACCCGATGACTTCTTTGATCGACCTGGTGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtaagtgccttatcagtgatccttttctgcttccagAGTAAGGGTGTTAG Alignment from Spaln_aa2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG gattcggctgtgtttgagctatacttgtagccattttgttcaccttacagCGAGTCATTGAACCCGATGACTTCTTTGATCGACCTGGTGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtaagtgccttatctctctttttattgtgggttcagAGTAAGGGTGTTAG Alignment from Spaln_nt2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG gattcggctgtgtttgagctatacttgtagccattttgttcaccttacagCGAGTCATTGAACCCGATGACTTCTTTGATCGACCTGGTGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtaagtgccttatctctctttttattgtgggttcagAGTAAGGGTGTTAG Alignment from Pairagon CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG gattcggctgtgtttgagctatacttgtagccattttgttcaccttacagCGAGTCATTGAACCCGATGACTTCTTTGATCGACCTGGTGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtaagtgccttatctctctttttattgtgggttcagAGTAAGGGTGTTAG Alignment from Exonerate_protein2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG gattcggctgtgtttgagctatacttgtagccattttgttcaccttacagCGAGTCATTGAACCCGATGACTTCTTTGATCGACCTGGTGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtaagtgccttatctctctttttattgtgggttcagAGTAAGGGTGTTAG Alignment from Exonerate_coding2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG gattcggctgtgtttgagctatacttgtagccattttgttcaccttacagCGAGTCATTGAACCCGATGACTTCTTTGATCGACCTGGTGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtaagtgccttatctctctttttattgtgggttcagAGTAAGGGTGTTAG Alignment from GeneWise CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG------------------------------------AGTAAGGGTGTGAG gattcggctgtgtttgagctatacttgtagccattttgttcaccttacagCGAGTCATTGAACCCGATGACTTCTTTGATCGACCTGGTGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGGTAAGTGCCTTATCTCTCTTTTTATTGTGGGTTCAGAGTAAGGGTGTTAG #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGG-GAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGCGAAGAGG-GACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGaggtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGCGAAGAGGGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGaggtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGCGAAGAGGGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGCGAAGAGGGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGCGAAGAGGGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGCGAAGAGGGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Exonerate_coding2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGCGAAGAGGGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGCGAAGAGGGACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag #### Drap1_ID985_5 --> 1 - 0 Original Alignment CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAG-AACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtaagcagccaggggtctgcgccccctctcatccaaccccaggGGCCGTAAACCAGGTAGCAGTGGCAAGAAGCAATGGGG-CACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from CESAR CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtgagtagccaggggtctgcgccccctctcatccaaccccaggGGCCGTAAACCAGGTAGCAGTGGCAAGAAGCAATGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Spaln_aa2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagcagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGCAATGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Spaln_nt2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagcagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGCAATGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Pairagon CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagcagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGCAATGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Exonerate_protein2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagcagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGCAATGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Exonerate_coding2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagcagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGCAATGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from GeneWise CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagcagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGCAATGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATC-CTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataagcaaaggtagtagggagtatggtctcctctgtctccaggtATGTTCCAGCGGCTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCCTCTTTGGAA-TAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTATCCAgtgagtctttgggaagagagatatcataataggggtccagtggctttgag Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataagcaaaggtagtagggagtatggtctcctctgtctccaggtATGTTCCAGCGGCTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCCTCTTTGGAATAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTATCCAgtgagtctttgggaagagagatatcataataggggtccagtggctttgag Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataagcaaaggtagtagggagtatggtctcctctgtctccagGTATGTTCCAGCGGCTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCCTCTTTGGAATAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTATCCAgtgagtctttgggaagagagatatcataataggggtccagtggctttgag Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataagcaaaggtagtagggagtatggtctcctctgtctccagGTATGTTCCAGCGGCTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCCTCTTTGGAATAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTATCCAgtgagtctttgggaagagagatatcataataggggtccagtggctttgag Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTAT-CCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataagcaaaggtagtagggagtatggtctcctctgtctccagGTATGTTCCAGCGGCTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCCTCTTTGGAA-TAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTATCCAgtgagtctttgggaagagagatatcataataggggtccagtggctttgag Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataagcaaaggtagtagggagtatggtctcctctgtctccagGTATGTTCCAGCGGCTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCCTCTTTGGAATAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTATCCAgtgagtctttgggaagagagatatcataataggggtccagtggctttgag Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataagcaaaggtagtagggagtatggtctcctctgtctccagGTATGTTCCAGCGGCTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCCTCTTTGGAATAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTATCCAgtgagtctttgggaagagagatatcataataggggtccagtggctttgag Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataagcaaaggtagtagggagtatggtctcctctgtctccagGTATGTTCCAGCGGCTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCCTCTTTGGAATAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTATCCAgtgagtctttgggaagagagatatcataataggggtccagtggctttgag #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGT-GTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggtactcaggctcccccaccttctccctctttcagatTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTCGTGGAGC-ATATGTCCACGTATCAGACaagtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggtactcaggctcccccaccttctccctctttcagatTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTCGTGGAGCATATGTCCACGTATCAGACaagtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTCGTGGAGCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGT-GTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTCGTGGAG-CATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Pairagon ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGT-GTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTCGTGGAG-CATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTCGTGGAGCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTCGTGGAGCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTCGTGGAGCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg #### Ehbp1l1_ID1220_15 --> 0 - 1 Original Alignment CAACGGTTCCAGGACACAAGTCAG-TACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctggggtggggtcacttgtcctctggggcggtcggtctctctgcagCAACGGTTCCAGGACACAAGTCAGCTATGTGT-CGCAGAGCAGCAAGCCCTAGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAggtcagtcccctcacttttggttttgctcctttagaattcaccgccttgtc Alignment from CESAR CAACGGTTCCAGGACACAAGTCAGTACGTGTGC---GCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctggggtggggtcacttgtcctctggggcggtcggtctctctgcagCAACGGTTCCAGGACACAAGTCAG---CTATGTGTCGCAGAGCAGCAAGCCCTAGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAggtcagtcccctcacttttggttttgctcctttagaattcaccgccttgtc Alignment from Spaln_aa2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctggggcggtcggtctctctgcagCAACGGTTCCAGGACACAAGTCAGCTATGTGTCGCAGAGCAGCAAGCCCTAGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtcagtcccctcacttttggttttgctcctttagaattcaccgccttgtc Alignment from Spaln_nt2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctggggcggtcggtctctctgcagCAACGGTTCCAGGACACAAGTCAGCTATGTGTCGCAGAGCAGCAAGCCCTAGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtcagtcccctcacttttggttttgctcctttagaattcaccgccttgtc Alignment from Pairagon CAACGGTTCCAGGACACAAGTCAG-TACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctggggcggtcggtctctctgcagCAACGGTTCCAGGACACAAGTCAGCTATGTGT-CGCAGAGCAGCAAGCCCTAGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtcagtcccctcacttttggttttgctcctttagaattcaccgccttgtc Alignment from Exonerate_protein2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctggggcggtcggtctctctgcagCAACGGTTCCAGGACACAAGTCAGCTATGTGTCGCAGAGCAGCAAGCCCTAGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtcagtcccctcacttttggttttgctcctttagaattcaccgccttgtc Alignment from Exonerate_coding2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctggggcggtcggtctctctgcagCAACGGTTCCAGGACACAAGTCAGCTATGTGTCGCAGAGCAGCAAGCCCTAGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtcagtcccctcacttttggttttgctcctttagaattcaccgccttgtc Alignment from GeneWise CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacttgtcctctggggcggtcggtctctctgcagCAACGGTTCCAGGACACAAGTCAGCTATGTGTCGCAGAGCAGCAAGCCCTAGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtcagtcccctcacttttggttttgctcctttagaattcaccgccttgtc #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACC-CTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCCTAGTCAGCT-CAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCCTAGTCAGCTCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCCTAGTCAGCTCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCCTAGTCAGCTCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Pairagon GCACCACCTA-CCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCCTAGTCAGCT-CAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCCTAGTCAGCTCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCCTAGTCAGCTCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCCTAGTCAGCTCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat #### Ehbp1l1_ID1228_7 --> 2 - 1 Original Alignment atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGC-CACATACGGCCCCAGCAGGCAg aaaccatatgcctgtgtatgatttcatccattctttccttctcttcccagatCTGTCGCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCCACATAC-TCCCCAGCAGTCAggtaatcctggcctggtaacggggttgcagtctgaacctacatgacctgta Alignment from CESAR atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaaccatatgcctgtgtatgatttcatccattctttccttctcttcccagatCTGTCGCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCCACATACTCCCCAGCAGTCAggtaatcctggcctggtaacggggttgcagtctgaacctacatgacctgca Alignment from Spaln_aa2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcctgtgtatgatttcatccattctttccttctcttcccagATCTGTCGCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCCACATACTCCCCAGCAGTCAGgtaatcctggcctggtaacggggttgcagtctgaacctacatgacctgta Alignment from Spaln_nt2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCC-ACATACGGCCCCAGCAGGCAG aaaccatatgcctgtgtatgatttcatccattctttccttctcttcccagATCTGTCGCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCCACATAC-TCCCCAGCAGTCAGgtaatcctggcctggtaacggggttgcagtctgaacctacatgacctgta Alignment from Pairagon ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGG-CCACATACGGCCCCAGCAGGCAG aaaccatatgcctgtgtatgatttcatccattctttccttctcttcccagATCTGTCGCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCCACATAC-TCCCCAGCAGTCAGgtaatcctggcctggtaacggggttgcagtctgaacctacatgacctgta Alignment from Exonerate_protein2genome aaaccatatgcctgtgtatgatttcatccattctttccttctcttcccagatctgtcgcgtgagctgaagacactctgtgaggaagaagatgaaggcccacatactccccagcagtcaggtaatcctggcctggtaacggggttgcagtctgaacctacatgacctgta Alignment from Exonerate_coding2genome aaaccatatgcctgtgtatgatttcatccattctttccttctcttcccagatctgtcgcgtgagctgaagacactctgtgaggaagaagatgaaggcccacatactccccagcagtcaggtaatcctggcctggtaacggggttgcagtctgaacctacatgacctgta Alignment from GeneWise ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcctgtgtatgatttcatccattctttccttctcttcccagATCTGTCGCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCCACATACTCCCCAGCAGTCAGgtaatcctggcctggtaacggggttgcagtctgaacctacatgacctgta #### Ehbp1l1_ID1232_3 --> 0 - 0 Original Alignment GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATC-TCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCCTCAG-AACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from CESAR GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCCTCAGAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from Spaln_aa2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCCTCAGAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from Spaln_nt2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCCTCAGAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from Pairagon GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCCTCAGAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from Exonerate_protein2genome tataagaattcaacaatggtggggaatagactggctccttctgtgtgcaggcccacagctggcagcctggcattcagaatccataccttggcactgcagtatggatggttcctgagaatgtggacatcctcagaaccttgcacaaggtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from Exonerate_coding2genome tataagaattcaacaatggtggggaatagactggctccttctgtgtgcaggcccacagctggcagcctggcattcagaatccataccttggcactgcagtatggatggttcctgagaatgtggacatcctcagaaccttgcacaaggtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from GeneWise GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCCTCAGAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGC-TCTCTACAGAAGGAGGGTCACtg ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagggGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCATGTCCACCGCCC-ACAGAAGGAAGGCCAAtggtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagggGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCATGTCCACCGCCCACAGAAGGAAGGCCAAtggtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCATGTCCACCGCCCACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCATGTCCACCGCCCACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCATGTCCACCGCCCACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCATGTCCACCGCCCACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCATGTCCACCGCCCACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG ttgacttatgtccttcaccacctctaacgactcacatttctcctctgcagGGGACTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCAGAGATCTCATTTGTACTCTGCAAGAACCATGTCCACCGCCCACAGAAGGAAGGCCAATGgtgagttggtctccctctgccaccgtctggcaataagagactgttagcag #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAA-CGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCAGGAACCGCCTCAAAA-TCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCAGGAACCGCCTCAAAATCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCAGGAACCGCCTCAAAATCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCAGGAACCGCCTCAAAATCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCAGGAACCGCCTCAAAATCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCAGGAACCGCCTCAAAATCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCAGGAACCGCCTCAAAATCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtatgagccccccacatcactgctgacagGACCTTGAAGAACTGGACCAAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAGAAGGAACTTCAGGAACCGCCTCAAAATCAAGAAAAGAAGgtgagtgtgggtcactgataggttctaatcctaaactaaattggacctaa #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCT-TCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTATGCCTCTCAGAACAGA-AAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTATGCCTCTCAGAACAGAAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTATGCCTCTCAGAACAGAAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTATGCCTCTCAGAACAGAAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCT-TCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTATGCCTCTCAGAACAGA-AAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTATGCCTCTCAGAACAGAAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTATGCCTCTCAGAACAGAAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTGCAAGGTATGCCTCTCAGAACAGAAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTA-GAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag aatggatttgctgtgccttactttaaagtgccttcttattctttgtaaagGTAAACATTAAATCTTTACAAGG-TGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtagcaagtaagagggcattttttatcatcagacaaggtgttacaacaat Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag aatggatttgctgtgccttactttaaagtgccttcttattctttgtaaagGTAAACATTAAATCTTTACAAGGTGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtagcaagtaagagggcattttttatcatcagacaaggtgttacaacaat Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG aatggatttgctgtgccttactttaaagtgccttcttattctttgtaaagGTAAACATTAAATCTTTACAAGGTGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtagcaagtaagagggcattttttatcatcagacaaggtgttacaacaat Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG aatggatttgctgtgccttactttaaagtgccttcttattctttgtaaagGTAAACATTAAATCTTTACAAGGTGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtagcaagtaagagggcattttttatcatcagacaaggtgttacaacaat Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG aatggatttgctgtgccttactttaaagtgccttcttattctttgtaaagGTAAACATTAAATCTTTACAAGGTGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtagcaagtaagagggcattttttatcatcagacaaggtgttacaacaat Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG aatggatttgctgtgccttactttaaagtgccttcttattctttgtaaagGTAAACATTAAATCTTTACAAGGTGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtagcaagtaagagggcattttttatcatcagacaaggtgttacaacaat Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG aatggatttgctgtgccttactttaaagtgccttcttattctttgtaaagGTAAACATTAAATCTTTACAAGGTGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtagcaagtaagagggcattttttatcatcagacaaggtgttacaacaat Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG aatggatttgctgtgccttactttaaagtgccttcttattctttgtaaagGTAAACATTAAATCTTTACAAGGTGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtagcaagtaagagggcattttttatcatcagacaaggtgttacaacaat #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAA-TTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGCTTAG-GATTGTACCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACacgtatgacaccttttttggcctccaggCCGCGAAGAAATTCTTCCTCCTCA Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGCTTAGGATTGTACCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACacgtatttacttccttgcctgttttaggCCGCGAAGAAATTCTTCCTCCTCA Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCA GCGTTCTGACACGCCCCGAAGAAAT tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGCTTAGGATTGTACCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAgtgttcagacacgtatgacaccttttttggcctccagG------------CCGCGAAGAAAT Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGC GTTCTGACACGCCCCGAAGAAATTC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGCTTAGGATTGTACCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTgttcagacacgtatgacaccttttttggcctccag----------GCCGCGAAGAAATTC Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC-------------------------GCCCCGAAGAAATTCTTCCTCCTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGCTTAGGATTGTACCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACGTATGACACCTTTTTTGGCCTCCAGGCCGCGAAGAAATTCTTCCTCCTCA Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGCTTAGGATTGTACCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtatgacaccttttttggcctccaggccgcgA---AGAAATTCTTCCTCC Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGCTTAGGATTGTACCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtatgacaccttttttggcctccaggccgcgA---AGAAATTCTTCCTCC Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACACG---------------------------CCCCGAAGAAATTCTTCCTCCT tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGCTTAGGATTGTACCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACGTATGACACCTTTTTTGGCCTCCAGG--CCGCGAAGAAATTCTTCCTCCT #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGC-GGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagtTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTCGGTCAGAGAC-CTATCGGGGTCACACAGACTGTGTTCGAtggtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagtTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTCGGTCAGAGACCTATCGGGGTCACACAGACTGTGTTCGAtggtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTCGGTCAGAGACCTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTCGGTCAGAGACCTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGG-CGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTCGGTCAGAGAC-CTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTCGGTCAGAGACCTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTCGGTCAGAGACCTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTCGGTCAGAGACCTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGT-GTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaactttatttcccagctctgccctcctctgaccccacagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGACTGGGTGCTTTTGAGCGAGGTCGTGGGGG-CTTGGCCTTTTCAGCAGCAgtgatttgagtatggcagcatgtagcttgtgatcttgttgggttgttttt Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaactttatttcccagctctgccctcctctgaccccacagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGACTGGGTGCTTTTGAGCGAGGTCGTGGGGGCTTGGCCTTTTCAGCAGCAgtgatttgagtatggcagcatgtagcttgtgatcttgttgggttgttttt Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaactttatttcccagctctgccctcctctgaccccacagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGACTGGGTGCTTTTGAGCGAGGTCGTGGGGGCTTGGCCTTTTCAGCAGCAgtgatttgagtatggcagcatgtagcttgtgatcttgttgggttgttttt Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaactttatttcccagctctgccctcctctgaccccacagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGACTGGGTGCTTTTGAGCGAGGTCGTGGGGGCTTGGCCTTTTCAGCAGCAgtgatttgagtatggcagcatgtagcttgtgatcttgttgggttgttttt Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaactttatttcccagctctgccctcctctgaccccacagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGACTGGGTGCTTTTGAGCGAGGTCGTGGGGGCTTGGCCTTTTCAGCAGCAgtgatttgagtatggcagcatgtagcttgtgatcttgttgggttgttttt Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaactttatttcccagctctgccctcctctgaccccacagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGACTGGGTGCTTTTGAGCGAGGTCGTGGGGGCTTGGCCTTTTCAGCAGCAgtgatttgagtatggcagcatgtagcttgtgatcttgttgggttgttttt Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaactttatttcccagctctgccctcctctgaccccacagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGACTGGGTGCTTTTGAGCGAGGTCGTGGGGGCTTGGCCTTTTCAGCAGCAgtgatttgagtatggcagcatgtagcttgtgatcttgttgggttgttttt Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaactttatttcccagctctgccctcctctgaccccacagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGACTGGGTGCTTTTGAGCGAGGTCGTGGGGGCTTGGCCTTTTCAGCAGCAgtgatttgagtatggcagcatgtagcttgtgatcttgttgggttgttttt #### Eml3_ID2512_11 --> 0 - 0 Original Alignment AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGC-TGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCCTGTATTG-CACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGGAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from CESAR AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCCTGTATTGCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGGAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from Spaln_aa2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCCTGTATTGCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGGAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from Spaln_nt2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCCTGTATTGCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGGAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from Pairagon AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAG-CTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCCTGTATTG-CACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGGAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from Exonerate_protein2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCCTGTATTGCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGGAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from Exonerate_coding2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCCTGTATTGCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGGAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac Alignment from GeneWise AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG tgccaggcctagacttgttcgagccatacagcaagaacctgttgtttcagAGTACAAATGACTCAGTCCTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGCCTGTATTGCACTAGTGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCCCGGAAGCAGGGTGTTCTTGGGgtagtctgggtgaggtgattgaggctgctacatactctattgcaccacac #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCC-GAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg ttgcaccacaccacccctgcaacccatctaacctctctcctacctcatagAAATACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGACGGAGACATTCTAACTGGAGACTCTCGAGGGGAACA-TCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAggtaagttgaggcaggagttgggaatactgtatctcagatcagagattcag Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg ttgcaccacaccacccctgcaacccatctaacctctctcctacctcatagAAATACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGACGGAGACATTCTAACTGGAGACTCTCGAGGGGAACATCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAggtaagttgaggcaggagttgggaatactgtatctcagatcagagattcag Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ttgcaccacaccacccctgcaacccatctaacctctctcctacctcatagAAATACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGACGGAGACATTCTAACTGGAGACTCTCGAGGGGAACATCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtaagttgaggcaggagttgggaatactgtatctcagatcagagattcag Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ttgcaccacaccacccctgcaacccatctaacctctctcctacctcatagAAATACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGACGGAGACATTCTAACTGGAGACTCTCGAGGGGAACATCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtaagttgaggcaggagttgggaatactgtatctcagatcagagattcag Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTC-CGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ttgcaccacaccacccctgcaacccatctaacctctctcctacctcatagAAATACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGACGGAGACATTCTAACTGGAGACTCTCGAGGGGAACA-TCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtaagttgaggcaggagttgggaatactgtatctcagatcagagattcag Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ttgcaccacaccacccctgcaacccatctaacctctctcctacctcatagAAATACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGACGGAGACATTCTAACTGGAGACTCTCGAGGGGAACATCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtaagttgaggcaggagttgggaatactgtatctcagatcagagattcag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ttgcaccacaccacccctgcaacccatctaacctctctcctacctcatagAAATACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGACGGAGACATTCTAACTGGAGACTCTCGAGGGGAACATCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtaagttgaggcaggagttgggaatactgtatctcagatcagagattcag #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAA-GGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAACGGTT-CTCCCCTGTTATCCAGgtgcgtattgtagctaacaaatattcgtatttctagGGACACACTGATGA Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAACGGTTCTCCCCTGTTATCCAGgtgcgtattgtagccctctcccttcttgcttcttagGGACACACTGATGA Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAACGGTTCTCCCCTGTTATCCAGgtgcgtattgtagctaacaaatattcgtatttctagGGACACACTGATGA Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAACGGTTCTCCCCTGTTATCCAGgtgcgtattgtagctaacaaatattcgtatttctagGGACACACTGATGA Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAACGGTTCTCCCCTGTTATCCAGgtgcgtattgtagctaacaaatattcgtatttctagGGACACACTGATGA Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAACGGTTCTCCCCTGTTATCCAGgtgcgtattgtagctaacaaatattcgtatttctagGGACACACTGATGA Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAACGGTTCTCCCCTGTTATCCAGgtgcgtattgtagctaacaaatattcgtatttctagGGACACACTGATGA Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAACGGTTCTCCCCTGTTATCCAGgtgcgtattgtagctaacaaatattcgtatttctagGGACACACTGATGA #### Eml3_ID2522_21 --> 2 - 0 Original Alignment gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaataatacagggatgcaataacactgttttcattatctttaaatacaggtGTATGGCCTGGTGGCTGCGATGGGACAGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAACGTGCATG-CTTTCAGTATCCATGTGCTCGGGCCAAGgtaagtcttcatgagcccattgggcccaggtgcgaacagttttggtgccc Alignment from CESAR gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaataatacagggatgcaataacactgttttcattatctttaaatacaggtGTATGGCCTGGTGGCTGCGATGGGACAGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAACGTGCATGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaagtcttcatgagcccattgggcccaggtgcgaacagttttggtgccc Alignment from Spaln_aa2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaataatacagggatgcaataacactgttttcattatctttaaatacagGTGTATGGCCTGGTGGCTGCGATGGGACAGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAACGTGCATGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaagtcttcatgagcccattgggcccaggtgcgaacagttttggtgccc Alignment from Spaln_nt2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaataatacagggatgcaataacactgttttcattatctttaaatacagGTGTATGGCCTGGTGGCTGCGATGGGACAGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAACGTGCA-TGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaagtcttcatgagcccattgggcccaggtgcgaacagttttggtgccc Alignment from Pairagon GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAA-------GTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaataatacagggatgcaataacactgttttcattatctttaaatacagGTGTATGGCCTGGTGGCTGCGATGGGACAGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAACGTGCATG-------CTTTCAGTATCCATGTGCTCGGGCCAAGgtaagtcttcatgagcccattgggcccaggtgcgaacagttttggtgccc Alignment from Exonerate_protein2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaataatacagggatgcaataacactgttttcattatctttaaatacagGTGTATGGCCTGGTGGCTGCGATGGGACAGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAACGTGCATGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaagtcttcatgagcccattgggcccaggtgcgaacagttttggtgccc Alignment from Exonerate_coding2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaataatacagggatgcaataacactgttttcattatctttaaatacagGTGTATGGCCTGGTGGCTGCGATGGGACAGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAACGTGCATGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaagtcttcatgagcccattgggcccaggtgcgaacagttttggtgccc Alignment from GeneWise GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG agaataatacagggatgcaataacactgttttcattatctttaaatacagGTGTATGGCCTGGTGGCTGCGATGGGACAGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAACGTGCATGCTTTCAGTATCCATGTGCTCGGGCCAAGgtaagtcttcatgagcccattgggcccaggtgcgaacagttttggtgccc #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAGGAAGGCAGC-CCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaggtGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCCTGGCA-TGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from CESAR gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaggtGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCCTGGCATGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCCTGGCATGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCCTGGCATGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Pairagon GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCCTGGCATGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCCTGGCATGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Exonerate_coding2genome GGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaGGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCCTGGCATGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from GeneWise GGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaGGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCCTGGCATGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca #### Fads1_ID2689_3 --> 0 - 0 Original Alignment AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTG-CTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCA-TCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from CESAR AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Spaln_aa2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Spaln_nt2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Pairagon AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTG-CTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATCC-ACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Exonerate_protein2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Exonerate_coding2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from GeneWise AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGT-TGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTCTGGC-ACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTCTGGCACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTCTGGCACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTCTGGCACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTCTGGCACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTCTGGCACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTCTGGCACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTCTGGCACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtaggTTTCTGGAAAGCAACTGGCTTTGTGT-GGTGACACAGATGAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtaggTTTCTGGAAAGCAACTGGCTTTGTGTGGTGACACAGATGAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGCTTTGTGTGGTGACACAGATGAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGCTTTGTGTGGTGACACAGATGAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Pairagon GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGCTTTGTGT-GGTGACACAGATGAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGCTTTGTGTGGTGACACAGATGAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGCTTTGTGTGGTGACACAGATGAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGCTTTGTGTGGTGACACAGATGAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTA-AATTTCCAGATTGAACACca atgatcctacactctgacatggaaatctgatatctttgttttcttcgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTACAATT-CCAGATTGAACACcagtatgtgcagatacccgggaaacaggggtggcacggagataagggtggac Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgatcctacactctgacatggaaatctgatatctttgttttcttcgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTACAATTCCAGATTGAACACcagtatgtgcagatacccgggaaacaggggtggcacggagataagggtggac Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaatctgatatctttgttttcttcgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTACAATTCCAGATTGAACACCAgtatgtgcagatacccgggaaacaggggtggcacggagataagggtggac Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaatctgatatctttgttttcttcgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTACAATTCCAGATTGAACACCAgtatgtgcagatacccgggaaacaggggtggcacggagataagggtggac Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaatctgatatctttgttttcttcgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTACAATTCCAGATTGAACACCAgtatgtgcagatacccgggaaacaggggtggcacggagataagggtggac Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaatctgatatctttgttttcttcgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTACAATTCCAGATTGAACACCAgtatgtgcagatacccgggaaacaggggtggcacggagataagggtggac Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaatctgatatctttgttttcttcgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTACAATTCCAGATTGAACACCAgtatgtgcagatacccgggaaacaggggtggcacggagataagggtggac Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctacactctgacatggaaatctgatatctttgttttcttcgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTACAATTCCAGATTGAACACCAgtatgtgcagatacccgggaaacaggggtggcacggagataagggtggac #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta caataagggattgacagggaagcaaaattactgacccatccccattgcagtGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACAC-AGTAGTACAATCCCTATGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta caataagggattgacagggaagcaaaattactgacccatccccattgcagtGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACAGTAGTACAATCCCTATGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACAGTAGTACAATCCCTATGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACAGTAGTACAATCCCTATGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAG-GTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACA-CAGTAGTACAATCCCTATGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACAGTAGTACAATCCCTATGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Exonerate_coding2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACAGTAGTACAATCCCTATGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from GeneWise CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGCGTGACACAGTAGTACAATCCCTATGTGCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTC-CACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG taccaggctggagcacaacaattcagcccgtgtgtgcattctgtctccagGATTTTTCTGCCCACTGGTGGAATTTCCGTCACTTCAAGCATCATGCCAAACCCAACATATTCCCACAAAG-CCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGCGTATCATCTGTAGAGgtaagaggtagttttgtcccccacagctcacgaggcccactggagactga Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG taccaggctggagcacaacaattcagcccgtgtgtgcattctgtctccagGATTTTTCTGCCCACTGGTGGAATTTCCGTCACTTCAAGCATCATGCCAAACCCAACATATTCCCACAAAGCCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGCGTATCATCTGTAGAGgtaagaggtagttttgtcccccacagctcacgaggcccactggagactga Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG taccaggctggagcacaacaattcagcccgtgtgtgcattctgtctccagGATTTTTCTGCCCACTGGTGGAATTTCCGTCACTTCAAGCATCATGCCAAACCCAACATATTCCCACAAAGCCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGCGTATCATCTGTAGAGgtaagaggtagttttgtcccccacagctcacgaggcccactggagactga Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG taccaggctggagcacaacaattcagcccgtgtgtgcattctgtctccagGATTTTTCTGCCCACTGGTGGAATTTCCGTCACTTCAAGCATCATGCCAAACCCAACATATTCCCACAAAGCCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGCGTATCATCTGTAGAGgtaagaggtagttttgtcccccacagctcacgaggcccactggagactga Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG taccaggctggagcacaacaattcagcccgtgtgtgcattctgtctccagGATTTTTCTGCCCACTGGTGGAATTTCCGTCACTTCAAGCATCATGCCAAACCCAACATATTCCCACAAAGCCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGCGTATCATCTGTAGAGgtaagaggtagttttgtcccccacagctcacgaggcccactggagactga Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG taccaggctggagcacaacaattcagcccgtgtgtgcattctgtctccagGATTTTTCTGCCCACTGGTGGAATTTCCGTCACTTCAAGCATCATGCCAAACCCAACATATTCCCACAAAGCCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGCGTATCATCTGTAGAGgtaagaggtagttttgtcccccacagctcacgaggcccactggagactga Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG taccaggctggagcacaacaattcagcccgtgtgtgcattctgtctccagGATTTTTCTGCCCACTGGTGGAATTTCCGTCACTTCAAGCATCATGCCAAACCCAACATATTCCCACAAAGCCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGCGTATCATCTGTAGAGgtaagaggtagttttgtcccccacagctcacgaggcccactggagactga Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG taccaggctggagcacaacaattcagcccgtgtgtgcattctgtctccagGATTTTTCTGCCCACTGGTGGAATTTCCGTCACTTCAAGCATCATGCCAAACCCAACATATTCCCACAAAGCCCTGATGTGACTGTTGCACCTGTCTTCCTTCTTGGCGTATCATCTGTAGAGgtaagaggtagttttgtcccccacagctcacgaggcccactggagactga #### Fads3_ID2664_7 --> 2 - 0 Original Alignment ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCG-TACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagttGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGC-GGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from CESAR ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagttGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from Spaln_aa2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from Spaln_nt2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from Pairagon TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCG-TACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGC-GGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from Exonerate_protein2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from Exonerate_coding2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from GeneWise TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTC-TTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCCCTGTCCT-CTCACCCTTCTACGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCaggtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCCCTGTCCTCTCACCCTTCTACGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCaggtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCCCTGTCCTCTCACCCTTCTACGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCCCTGTCCTCTCACCCTTCTACGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTT-CTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCCCTGTCCT-CTCACCCTTCTACGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCCCTGTCCTCTCACCCTTCTACGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCCCTGTCCTCTCACCCTTCTACGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccccaggtccccagcgcaggttcttttcttttcttttcaaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCCCTGTCCTCTCACCCTTCTACGGGGCCACTGGGACGCTAATTCTCTTTGTTGCTGTCAGgtaagtcgcaacatgctgtccattgaggtccacttaggtcttgctggcac #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAG-CATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccaggGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGG-CTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccaggGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGCTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGCTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGCTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from Pairagon GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGCTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGCTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGCTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGCTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTC-AGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTATTGACTGGTTCCAGTG-TCACCTCAATTTTCAAATTGAGCACtagtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTATTGACTGGTTCCAGTGTCACCTCAATTTTCAAATTGAGCACtagtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTATTGACTGGTTCCAGTGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTATTGACTGGTTCCAGTGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTATTGACTGGTTCCAGTGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTATTGACTGGTTCCAGTGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from Exonerate_coding2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTATTGACTGGTTCCAGTGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTATTGACTGGTTCCAGTGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATC-AACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCCAATGTGC-CAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCCAATGTGCCAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCCAATGTGCCAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATC-AACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCCAATGTGC-CAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACA-----------CATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCCAATGTGC-----------CAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCCAATGTGCCAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCCAATGTGCCAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCCAATGTGCCAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATG-GAACCCCAGCTGATGCAGac ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGCGAAC-CCAGCTGATGCAGacgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGCGAACCCAGCTGATGCAGacgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGCGAACCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGCGAACCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGCGAACCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGCGAACCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGCGAACCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTATGCGAACCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGC-AGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagaTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCCAGACACCCAC-AAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagaTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCCAGACACCCACAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCCAGACACCCACAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCCAGACACCCACAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAG-CAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCCAGACACCCAC-AAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCCAGACACCCACAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCCAGACACCCACAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCCAGACACCCACAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCC-CGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagaGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCCGCACCA-CCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACaggtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagaGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCCGCACCACCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACaggtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCCGCACCACCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCCGCACCACCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCA-CCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCCGCACCA-CCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCCGCACCACCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCCGCACCACCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagaaaatatcttcatgagtggtttgacaccatttccctctggccctagAGATCTAGAAGAAGATCCATTATTTACGGATATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCCGCACCACCCAGACCATCCAAAAAACGATGGCAAGACAGAAGTGCATAAAGTGCTCAACAGgtgagccactcgtttttggtgagtgcatctgcatatgagctcagccgtca #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTATGG-TTGTTGACCATCCTTGTTTTGTTAATTCCACTTg cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacaggtCCCAGAAATTGCCTATGGCTTGT-GACCATCCTTGTTTTGTTGATTCCACTTggtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTg cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacaggtCCCAGAAATTGCCTATGGCTTGTGACCATCCTTGTTTTGTTGATTCCACTTggtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGCTTGTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGCTTGTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Pairagon GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGCTTGTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Exonerate_protein2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGCTTGTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGCTTGTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGCTTGTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTG-CTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagaCTCCTTGATCTGCCTTGGGAAGATGTGCCTGCTCCTGC-TGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagaCTCCTTGATCTGCCTTGGGAAGATGTGCCTGCTCCTGCTGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCCTGCTCCTGCTGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCCTGCTCCTGCTGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTG-CTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAGGTGG---- acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCCTGCTCCTGC-TGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGGTAGCATGgtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCCTGCTCCTGCTGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCCTGCTCCTGCTGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCCTGCTCCTGCTGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACT-TCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACACTCCCTGC-CCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACACTCCCTGCCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACACTCCCTGCCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACACTCCCTGCCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCAC-TTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACACTCCCTGC-CCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACACTCCCTGCCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Exonerate_coding2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACACTCCCTGCCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from GeneWise GGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagggaGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACACTCCCTGCCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg #### Fgf8_ID9567_2 --> 1 - 0 Original Alignment gCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttccctcctccccacccccactcctaggCTGCTGCAATTGTTGCGTTTTCT-CCTCCAGGCCCAGgtaggtagtgcactcaagtgatgagagcaaagcaggaagcgtagggacag Alignment from CESAR gCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttccctcctccccacccccactcctaggCTGCTGCAATTGTTGCGTTTTCTCCTCCAGGCCCAGgtaggtagtgcactcaagtgatgagagcaaagcaggaagcgtagggacag Alignment from Spaln_aa2Genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttccctcctccccacccccactcctagGCTGCTGCAATTGTTGCGTTTTCTCCTCCAGGCCCAGgtaggtagtgcactcaagtgatgagagcaaagcaggaagcgtagggacag Alignment from Spaln_nt2Genome GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttccctcctccccacccccactcctagGCTGCTGCAATTGTTGCGTTTTCT-CCTCCAGGCCCAGgtaggtagtgcactcaagtgatgagagcaaagcaggaagcgtagggacag Alignment from Pairagon GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttccctcctccccacccccactcctagGCTGCTGCAATTGTTGCGTTTTCTCCTCCAGGCCCAGgtaggtagtgcactcaagtgatgagagcaaagcaggaagcgtagggacag Alignment from Exonerate_protein2genome gccccatctgctccttgagcctcttccctcctccccacccccactcctaggctgctgcaattgttgcgttttctcctccaggcccaggtaggtagtgcactcaagtgatgagagcaaagcaggaagcgtagggacag Alignment from Exonerate_coding2genome gccccatctgctccttgagcctcttccctcctccccacccccactcctaggctgctgcaattgttgcgttttctcctccaggcccaggtaggtagtgcactcaagtgatgagagcaaagcaggaagcgtagggacag Alignment from GeneWise gccccatctgctccttgagcctcttccctcctccccacccccactcctaggctgctgcaattgttgcgttttctcctccaggcccaggtaggtagtgcactcaagtgatgagagcaaagcaggaagcgtagggacag #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACC-ACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatctgggggccttatagggttttactttataaggatgtatttctgtagtgAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCCACAGGAG-GCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAaggtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatctgggggccttatagggttttactttataaggatgtatttctgtagtgAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCCACAGGAGGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAaggtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCCACAGGAGGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCCACAGGAGGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCT------CCTACTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCA-CCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCCACAGGAG-GCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCT------ACTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCCACAGGAGGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCCACAGGAGGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCCACAGGAGGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagcCTAGTTTGCACTCGCCCTTCGGG-AAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagcCTAGTTTGCACTCGCCCTTCGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTCGCCCTTCGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTCGCCCTTCGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTCGCCCTTCGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTCGCCCTTCGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTCGCCCTTCGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTCGCCCTTCGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct #### Fkbp2_ID1945_4 --> 2 - 1 Original Alignment ggTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAg gtG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcaggtTATGGGGAATGGGGACGCCC-CCCAAAGATCCCAggtaagacccctaccaccctgacctctttatacttagttcctttccaggtG Alignment from CESAR ggTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAg gtG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcaggtTATGGGGAATGGGGACGCCCCCCAAAGATCCCAggtaagacccctaccaccctgacctcaaaatatgtgtctgtgttttaggtG Alignment from Spaln_aa2Genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGgtaagacccctaccaccctgacctctttatacttagttcctttccagGTG Alignment from Spaln_nt2Genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGgtaagacccctaccaccctgacctctttatacttagttcctttccagGTG Alignment from Pairagon GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGgtaagacccctaccaccctgacctctttatacttagttcctttccagGTG Alignment from Exonerate_protein2genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGgtaagacccctaccaccctgacctctttatacttagttcctttccagGTG Alignment from Exonerate_coding2genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcagGTTATGGGGAATGGGGACGCCCCCCAAAGATCCCAGgtaagacccctaccaccctgacctctttatacttagttcctttccagGTG Alignment from GeneWise CCCAAAGATCCCAG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcaggttatggggaatggggacgccccccaaagatcccaggtaagacccctaccaccctgacctctttatacttagT---TCCTTTCCAG #### Fkbp2_ID1946_3 --> 1 - 1 Original Alignment gATGTGTGAAGGG-GAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGg ttgcctgttggcttgcacgttttaggtgccccatctttttccccctaaaggATGTGTGAAGGACGAAAGGC-GAAGTTGGTCATCCCGTCAGAACTGggtaagagagcatagtggtcagaaggtaattggatctggagaagacctaaa Alignment from CESAR gATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGg ttgcctgttggcttgcacgttttaggtgccccatctttttccccctaaaggATGTGTGAAGGACGAAAGGCGAAGTTGGTCATCCCGTCAGAACTGggtaagagagcatagtggtcagaaggtaattggatctggagaagacctaaa Alignment from Spaln_aa2Genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttgcctgttggcttgcacgttttaggtgccccatctttttccccctaaagGATGTGTGAAGGACGAAAGGCGAAGTTGGTCATCCCGTCAGAACTGGgtaagagagcatagtggtcagaaggtaattggatctggagaagacctaaa Alignment from Spaln_nt2Genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttgcctgttggcttgcacgttttaggtgccccatctttttccccctaaagGATGTGTGAAGGACGAAAGGCGAAGTTGGTCATCCCGTCAGAACTGGgtaagagagcatagtggtcagaaggtaattggatctggagaagacctaaa Alignment from Pairagon GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttgcctgttggcttgcacgttttaggtgccccatctttttccccctaaagGATGTGTGAAGGACGAAAGGCGAAGTTGGTCATCCCGTCAGAACTGGgtaagagagcatagtggtcagaaggtaattggatctggagaagacctaaa Alignment from Exonerate_protein2genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttgcctgttggcttgcacgttttaggtgccccatctttttccccctaaagGATGTGTGAAGGACGAAAGGCGAAGTTGGTCATCCCGTCAGAACTGGgtaagagagcatagtggtcagaaggtaattggatctggagaagacctaaa Alignment from Exonerate_coding2genome GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttgcctgttggcttgcacgttttaggtgccccatctttttccccctaaagGATGTGTGAAGGACGAAAGGCGAAGTTGGTCATCCCGTCAGAACTGGgtaagagagcatagtggtcagaaggtaattggatctggagaagacctaaa Alignment from GeneWise GATGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGG ttgcctgttggcttgcacgttttaggtgccccatctttttccccctaaagGATGTGTGAAGGACGAAAGGCGAAGTTGGTCATCCCGTCAGAACTGGgtaagagagcatagtggtcagaaggtaattggatctggagaagacctaaa #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTA-CTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGC-GCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCCTGGAGCGCACAAACTGGCGACTGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct #### Gal_ID62_4 --> 2 - 1 Original Alignment gaAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTC-AGTTTCTTGCACCTTAAAg aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctaggaAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCCAGTT-CTTGCACCTTAAAggtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from CESAR gaAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctaggaAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCCAGTTCTTGCACCTTAAAggtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Spaln_aa2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCCAGTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Spaln_nt2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCCAGTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Pairagon GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCCAGTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Exonerate_protein2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCCAGTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Exonerate_coding2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCCAGTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from GeneWise TGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctaggaagTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCCAGTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTG-GACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGCGACC-CCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAggtaagttctgctgtcaatgaaatagtcattttaaattttaatcttttata Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGCGACCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAggtaagttctgctgtcaatgaaatagtcattgttatggttttgttttgtca Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGCGACCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcattttaaattttaatcttttata Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATCAAGGT------AGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGCGACCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcattttaaattttaatcttttata Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGCGACCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcattttaaattttaatcttttata Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGCGACCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcattttaaattttaatcttttata Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGCGACCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcattttaaattttaatcttttata Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGCGACCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcattttaaattttaatcttttata #### Ganab_ID2475_14 --> 2 - 0 Original Alignment gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATG-TTCAGCTTTGACAATTATGAG taacctctgctgtcaatgaaatagtcattgttatggttttgttttgtcaggcTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGCTTCAGCT-TGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from CESAR gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG taagttctgctgtcaatgaaatagtcattgttatggttttgttttgtcaggcTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGCTTCAGCTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from Spaln_aa2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG taacctctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGCTTCAGCTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from Spaln_nt2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG taacctctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGCTTCAGCTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from Pairagon GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATG-TTCAGCTTTGACAATTATGAG taacctctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGCTTCAGC-TTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from Exonerate_protein2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG taacctctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGCTTCAGCTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from Exonerate_coding2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG taacctctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGCTTCAGCTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from GeneWise GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG taacctctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGCTTCAGCTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCAT-TATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agttgtttcctttttctccccctttacaagttagtgtgctaatttcctagGGTTCAGCTCCTAATCTCTATGTCTGGAATGACATGAATGAACCTTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATCTATG-GGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtaaatcagacaaaggggaaggcagtaaggcaaagggaatcagacagttg Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agttgtttcctttttctccccctttacaagttagtgtgctaatttcctagGGTTCAGCTCCTAATCTCTATGTCTGGAATGACATGAATGAACCTTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATCTATGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtaaatcagacaaaggggaaggcagtaaggcaaagggaatcagacagttg Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agttgtttcctttttctccccctttacaagttagtgtgctaatttcctagGGTTCAGCTCCTAATCTCTATGTCTGGAATGACATGAATGAACCTTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATCTATGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtaaatcagacaaaggggaaggcagtaaggcaaagggaatcagacagttg Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agttgtttcctttttctccccctttacaagttagtgtgctaatttcctagGGTTCAGCTCCTAATCTCTATGTCTGGAATGACATGAATGAACCTTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATCTATGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtaaatcagacaaaggggaaggcagtaaggcaaagggaatcagacagttg Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCAT-TATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agttgtttcctttttctccccctttacaagttagtgtgctaatttcctagGGTTCAGCTCCTAATCTCTATGTCTGGAATGACATGAATGAACCTTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATCTATGG-GGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtaaatcagacaaaggggaaggcagtaaggcaaagggaatcagacagttg Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agttgtttcctttttctccccctttacaagttagtgtgctaatttcctagGGTTCAGCTCCTAATCTCTATGTCTGGAATGACATGAATGAACCTTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATCTATGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtaaatcagacaaaggggaaggcagtaaggcaaagggaatcagacagttg Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agttgtttcctttttctccccctttacaagttagtgtgctaatttcctagGGTTCAGCTCCTAATCTCTATGTCTGGAATGACATGAATGAACCTTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATCTATGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtaaatcagacaaaggggaaggcagtaaggcaaagggaatcagacagttg Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agttgtttcctttttctccccctttacaagttagtgtgctaatttcctagGGTTCAGCTCCTAATCTCTATGTCTGGAATGACATGAATGAACCTTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATCTATGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtaaatcagacaaaggggaaggcagtaaggcaaagggaatcagacagttg #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAA-TGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttaggaGCTGTGTGGACAGGGGACAACACTGCCGAACTGGGATC-TTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAggtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttaggaGCTGTGTGGACAGGGGACAACACTGCCGAACTGGGATCTTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAggtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAACTGGGATCTTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAACTGGGATCTTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAA-TGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAACTGGGATC-TTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAACTGGGATCTTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAACTGGGATCTTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgtttcgtgggcaatcaggaccgtctgtgagcttatttgttctttagGAGCTGTGTGGACAGGGGACAACACTGCCGAACTGGGATCTTTGAAGATCTCTATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtcagtgaagtaaacgtttggggtattgcattggacatttgtggttttgt #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcaggtGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGG-CTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcaggtGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGA-GTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGG-CTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGACGTGCAGGCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTG-AGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTGCAGGCGCC-TTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTGCAGGCGCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTGCAGGCGCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTGCAGGCGCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTG-AGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTGCAGGCGC-CTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTGCAGGCGCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTGCAGGCGCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtaggcttactctttcttcttctccctaagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTGCAGGCGCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTCGTTGCTCTCAGTCCCCAGgtaggcatccaatcaatgagggctgacttaattatagactactttaagag #### Ganab_ID2484_23 --> 0 - 2 Original Alignment GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTG-TTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag ggtgaacacaccccctcattggcttaggatgtctccttccttctttctagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGCTTGCGGCGGT-CTCTTTCTCTGGCAGCACACTGGTGTCTaggtaagaggtgtcctctgtatgccttgcctccaagggctcaggctagcact Alignment from CESAR GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag ggtgaacacaccccctcattggcttaggatgtctccttccttctttctagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGCTTGCGGCGGTCTCTTTCTCTGGCAGCACACTGGTGTCTaggtaagaggtgtcctctgtatgccttgcctccaagggctcaggctagcact Alignment from Spaln_aa2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaacacaccccctcattggcttaggatgtctccttccttctttctagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGCTTGCGGCGGTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagaggtgtcctctgtatgccttgcctccaagggctcaggctagcact Alignment from Spaln_nt2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaacacaccccctcattggcttaggatgtctccttccttctttctagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGCTTGCGGCGGTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagaggtgtcctctgtatgccttgcctccaagggctcaggctagcact Alignment from Pairagon GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTG-TTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaacacaccccctcattggcttaggatgtctccttccttctttctagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGCTTGCGGCGG-TCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagaggtgtcctctgtatgccttgcctccaagggctcaggctagcact Alignment from Exonerate_protein2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaacacaccccctcattggcttaggatgtctccttccttctttctagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGCTTGCGGCGGTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagaggtgtcctctgtatgccttgcctccaagggctcaggctagcact Alignment from Exonerate_coding2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaacacaccccctcattggcttaggatgtctccttccttctttctagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGCTTGCGGCGGTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagaggtgtcctctgtatgccttgcctccaagggctcaggctagcact Alignment from GeneWise GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG ggtgaacacaccccctcattggcttaggatgtctccttccttctttctagGGTACTGCACAAGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGCTTGCGGCGGTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaagaggtgtcctctgtatgccttgcctccaagggctcaggctagcact #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGA-GATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGACGACC-AGAGGAAGCGGGTGACTCTAGCagtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGACGACCAGAGGAAGCGGGTGACTCTAGCagtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGACGACCAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGACGACCAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGACGACCAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGACGACCAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGACGACCAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGACGACCAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCT-CGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagctGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTT-CTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagctGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCCGATTTTCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac #### Gbf1_ID9800_19 --> 0 - 0 Original Alignment AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTAT-GCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaacgatgttacatgtgtttccatccccactccagAGCTGTAATGGCTCCCCTTTTGCTAATAGTGGTGCCTGCTTTGCCCTAGCCTATCGGTGTCATCA-GCTTAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgttggtttgaaaagatctgttcagctttgaaagtgtaaaccatattcagg Alignment from CESAR AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaacgatgttacatgtgtttccatccccactccagAGCTGTAATGGCTCCCCTTTTGCTAATAGTGGTGCCTGCTTTGCCCTAGCCTATCGGTGTCATCAGCTTAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgttggtttgaaaagatctgttcagctttgaaagtgtaaaccatattcagg Alignment from Spaln_aa2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaacgatgttacatgtgtttccatccccactccagAGCTGTAATGGCTCCCCTTTTGCTAATAGTGGTGCCTGCTTTGCCCTAGCCTATCGGTGTCATCAGCTTAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgttggtttgaaaagatctgttcagctttgaaagtgtaaaccatattcagg Alignment from Spaln_nt2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaacgatgttacatgtgtttccatccccactccagAGCTGTAATGGCTCCCCTTTTGCTAATAGTGGTGCCTGCTTTGCCCTAGCCTATCGGTGTCATCAGCTTAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgttggtttgaaaagatctgttcagctttgaaagtgtaaaccatattcagg Alignment from Pairagon AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTAT-GCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaacgatgttacatgtgtttccatccccactccagAGCTGTAATGGCTCCCCTTTTGCTAATAGTGGTGCCTGCTTTGCCCTAGCCTATCGGTGTCATCA-GCTTAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgttggtttgaaaagatctgttcagctttgaaagtgtaaaccatattcagg Alignment from Exonerate_protein2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaacgatgttacatgtgtttccatccccactccagAGCTGTAATGGCTCCCCTTTTGCTAATAGTGGTGCCTGCTTTGCCCTAGCCTATCGGTGTCATCAGCTTAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgttggtttgaaaagatctgttcagctttgaaagtgtaaaccatattcagg Alignment from Exonerate_coding2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaacgatgttacatgtgtttccatccccactccagAGCTGTAATGGCTCCCCTTTTGCTAATAGTGGTGCCTGCTTTGCCCTAGCCTATCGGTGTCATCAGCTTAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgttggtttgaaaagatctgttcagctttgaaagtgtaaaccatattcagg Alignment from GeneWise AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG aatttagttgtgggggaacgatgttacatgtgtttccatccccactccagAGCTGTAATGGCTCCCCTTTTGCTAATAGTGGTGCCTGCTTTGCCCTAGCCTATCGGTGTCATCAGCTTAATACTGACCAGCACAACCACAATGTTCGGAAGCAGAATGCGCCCATGACTCTAGAGgttggtttgaaaagatctgttcagctttgaaagtgtaaaccatattcagg #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTAT-GGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccaggAAGTGTGCCACGATCTCTGCCCACTATCGGCCTCA-TGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccaggAAGTGTGCCACGATCTCTGCCCACTATCGGCCTCATGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGATCTCTGCCCACTATCGGCCTCATGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGATCTCTGCCCACTATCGGCCTCATGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTAT-GGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGATCTCTGCCCACTATCGGCCTCA-TGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGATCTCTGCCCACTATCGGCCTCATGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGATCTCTGCCCACTATCGGCCTCATGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGATCTCTGCCCACTATCGGCCTCATGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTTGTGGATCCCAATGGCAAG-ATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATGGCAAGCATCTCTTTAC-ACGCGAGGAGACACCATCAAACcggtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from CESAR GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATGGCAAGCATCTCTTTACACGCGAGGAGACACCATCAAACcggtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATGGCAAGCATCTCTTTACACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATGGCAAGCATCTCTTTACACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Pairagon GTAGAAGATTTTGTGGATCCCAATGGCAAG-ATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATGGCAAGCATCTCTTTACA-CGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATGGCAAGCATCTCTTTACACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATGGCAAGCATCTCTTTACACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATGGCAAGCATCTCTTTACACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCT-ACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG taataagttgtcagaatgtcagtactcaacacacacctcatgtctgacagaGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCATCTCACGGAGA-CCAGGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtgagtcattgctctcccatgggaactcctaaagaagtgtgaccctatgt Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG taataagttgtcagaatgtcagtactcaacacacacctcatgtctgacagaGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCATCTCACGGAGACCAGGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtgagtcattgctctcccatgggaactcctaaagaagtgtgaccctatgt Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG taataagttgtcagaatgtcagtactcaacacacacctcatgtctgacagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCATCTCACGGAGACCAGGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtgagtcattgctctcccatgggaactcctaaagaagtgtgaccctatgt Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCT-ACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG taataagttgtcagaatgtcagtactcaacacacacctcatgtctgacagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCATCTCACGGAG-ACCAGGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtgagtcattgctctcccatgggaactcctaaagaagtgtgaccctatgt Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG taataagttgtcagaatgtcagtactcaacacacacctcatgtctgacagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCATCTCACGGAGACCAGGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtgagtcattgctctcccatgggaactcctaaagaagtgtgaccctatgt Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG taataagttgtcagaatgtcagtactcaacacacacctcatgtctgacagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCATCTCACGGAGACCAGGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtgagtcattgctctcccatgggaactcctaaagaagtgtgaccctatgt Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG taataagttgtcagaatgtcagtactcaacacacacctcatgtctgacagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCATCTCACGGAGACCAGGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtgagtcattgctctcccatgggaactcctaaagaagtgtgaccctatgt Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG taataagttgtcagaatgtcagtactcaacacacacctcatgtctgacagAGGAAAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCGGGGTCCATCTCACGGAGACCAGGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtgagtcattgctctcccatgggaactcctaaagaagtgtgaccctatgt #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAA-TCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAACTCACTGC-GGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAACTCACTGCGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAACTCACTGCGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAACTCACTGCGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from Pairagon CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAA-TCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAACTCACTGC-GGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAACTCACTGCGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAACTCACTGCGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatccatcgctgtctttctgctttagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCTCCAGCTGGAACTCACTGCGGAGCTCATGAAGgtaagttatgaacagatctcggaaagacagaatcgtgctggtgcagtgca #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTG-GGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGCGGCCCAC-TGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATggtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGCGGCCCACTGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATggtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGCGGCCCACTGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGCGGCCCACTGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTG-GGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGCGGCCCAC-TGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGCGGCCCACTGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGCGGCCCACTGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGT- atgtctggtctggaaaatgggccctagccttttcttttttcttccaccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTTCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGCGGCCCACTGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatcttgagggtcaatcagggagtgggtcatgtgagggatggag #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTG-CATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCCACGATC-GCAGAAGCTAGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCCACGATCGCAGAAGCTAGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCCACGATCGCAGAAGCTAGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCCACGATCGCAGAAGCTAGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTAC--------AGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGC--------CACGATCGCAGAAGCTAGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCCACGATCGCAGAAGCTAGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCCACGATCGCAGAAGCTAGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgagcacatacacagtctctctggcatttgactttatttgcagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCGTGCGCTTCTGGTGCCACGATCGCAGAAGCTAGATGCCCTGGAGTGGGAGTCTTGTTTTAACAAAgtaagtcctcaagtcaacagaagttcagataacaagataaaggtggagaa #### Gbf1_ID9817_36 --> 0 - 0 Original Alignment GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATC-CTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACT-CATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from CESAR GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from Spaln_aa2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from Spaln_nt2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from Pairagon GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTAT-CCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGAC-TCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from Exonerate_protein2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from Exonerate_coding2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg Alignment from GeneWise GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG agagctaatgcttaagtcttcaatccgtttgtgcttcgtttctctttcagGTCTTCCTGCAGCATTTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTCATGGACAAGTACATGCATGCTGGTTCCAGTGATTTGCTTgtgagatttgccctgagccatttttgtttgggcatatcttctcacgctgg #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTG-CCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCCACACTTGC-TGATGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCCACACTTGCTGATGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCCACACTTGCTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCCACACTTGCTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTG-CCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCCACACTTGC-TGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCCACACTTGCTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCCACACTTGCTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccaatttaaagcactactcctccttgtttcttctggtttgttgtagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTAATGGACACAGCAGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCCCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCCACACTTGCTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgattgcaactcctctgttcactgtactaagaattat #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTC-CGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG tgttaaggatttgcttaactcatctttatcttgatctatctattctgcagtTATCACTCAGAAACTAATCTTGTCCCGTTACATGA-GAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTGgtaagaacgtgacatgctagccatatacactggtatgtctaatttgatgt Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG tgttaaggatttgcttaactcatctttatcttgatctatctattctgcagtTATCACTCAGAAACTAATCTTGTCCCGTTACATGAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTGgtaagaacgtgacatgctagccatatacactggtatgtctaatttgatgt Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG tgttaaggatttgcttaactcatctttatcttgatctatctattctgcagTTATCACTCAGAAACTAATCTTGTCCCGTTACATGAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTGgtaagaacgtgacatgctagccatatacactggtatgtctaatttgatgt Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG tgttaaggatttgcttaactcatctttatcttgatctatctattctgcagTTATCACTCAGAAACTAATCTTGTCCCGTTACATGAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTGgtaagaacgtgacatgctagccatatacactggtatgtctaatttgatgt Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGG-TATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG tgttaaggatttgcttaactcatctttatcttgatctatctattctgcagTTATCACTCAGAAACTAATCTTGTCCCGTTACATG-AGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTGgtaagaacgtgacatgctagccatatacactggtatgtctaatttgatgt Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG tgttaaggatttgcttaactcatctttatcttgatctatctattctgcagTTATCACTCAGAAACTAATCTTGTCCCGTTACATGAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTGgtaagaacgtgacatgctagccatatacactggtatgtctaatttgatgt Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG tgttaaggatttgcttaactcatctttatcttgatctatctattctgcagTTATCACTCAGAAACTAATCTTGTCCCGTTACATGAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTGgtaagaacgtgacatgctagccatatacactggtatgtctaatttgatgt Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG tgttaaggatttgcttaactcatctttatcttgatctatctattctgcagTTATCACTCAGAAACTAATCTTGTCCCGTTACATGAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTGgtaagaacgtgacatgctagccatatacactggtatgtctaatttgatgt #### Hnrnpul2_ID2399_3 --> 1 - 1 Original Alignment cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGAT-GAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt ggataagttctaattataacatatttgtagagtcatctgttctcctgcagcTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATCGAGG-GGAGGCCCAGTCACTTGTCAACCTGGACACAtgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from CESAR cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt ggataagttctaattataacatatttgtagagtcatctgttctcctgcagcTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATCGAGGGGAGGCCCAGTCACTTGTCAACCTGGACACAtgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from Spaln_aa2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATCGAGGGGAGGCCCAGTCACTTGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from Spaln_nt2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATCGAGGGGAGGCCCAGTCACTTGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from Pairagon CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATCGAGGGGAGGCCCAGTCACTTGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from Exonerate_protein2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATCGAGGGGAGGCCCAGTCACTTGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from Exonerate_coding2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATCGAGGGGAGGCCCAGTCACTTGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from GeneWise CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATCGAGGGGAGGCCCAGTCACTTGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTC-ATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATACATCT-CCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGaagtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATACATCTCCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGaagtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATACATCTCCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATACATCTCCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGT-CATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATACATCT-CCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATACATCTCCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATACATCTCCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAG-GAGGAGGAGGAGGATAGCGACAGCCCTCAG tcccacaccattttagttgtattctcacagtttttctctcacatctatagcCAAGGCGCAAGCACCCTGTGCCCTGCAGACCTCCTT---------CTCCTAGTGCATGATCTTCAGCCCTCACCAGGTATGACAGAGGAGGAGCGGGGAGGAAG-AGATAGTCACAGCCCTCAGgtgggtgaagacaagcagaatagggttaagctgctctaagatagacagaa Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG tcccacaccattttagttgtattctcacagtttttctctcacatctatagcCAAGGCGCAAGCACCCTGTGCCCTGCAGACCTCCTT---------CTCCTAGTGCATGATCTTCAGCCCTCACCAGGTATGACAGAGGAGGAGCGGGGAGGAAGAGATAGTCACAGCCCTCAGgtgggtgaagacaagcagaatagggttaagctgctctaagatagacagaa Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG tcccacaccattttagttgtattctcacagtttttctctcacatctatagCCAAGGCGCAAGCACCCTGTGCCCTGCAGACCTCCTT---------CTCCTAGTGCATGATCTTCAGCCCTCACCAGGTATGACAGAGGAGGAGCGGGGAGGAAGAGATAGTCACAGCCCTCAGgtgggtgaagacaagcagaatagggttaagctgctctaagatagacagaa Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAG-GAGGAGGAGGAGGATAGCGACAGCCCTCAG tcccacaccattttagttgtattctcacagtttttctctcacatctatagCCAAGGCGCAAGCACCCTGTGCCCTGCAGAC---------CTCCTTCTCCTAGTGCATGATCTTCAGCCCTCACCAGGTATGACAGAGGAGGAGCGGGGAGGAAGA-GATAGTCACAGCCCTCAGgtgggtgaagacaagcagaatagggttaagctgctctaagatagacagaa Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAG-GAGGAGGAGGAGGATAGCGACAGCCCTCAG tcccacaccattttagttgtattctcacagtttttctctcacatctatagCCAAGGCGCAAGCACCCTGTGCCCTGCAGACCTCC---------TTCTCCTAGTGCATGATCTTCAGCCCTCACCAGGTATGACAGAGGAGGAGCGGGGAGGAAGA-GATAGTCACAGCCCTCAGgtgggtgaagacaagcagaatagggttaagctgctctaagatagacagaa Alignment from Exonerate_protein2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG tcccacaccattttagttgtattctcacagtttttctctcacatctatagCCAAGGCGCAAGCACCCTGTGCCCTGCAGACCTCCTT---------CTCCTAGTGCATGATCTTCAGCCCTCACCAGGTATGACAGAGGAGGAGCGGGGAGGAAGAGATAGTCACAGCCCTCAGgtgggtgaagacaagcagaatagggttaagctgctctaagatagacagaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG tcccacaccattttagttgtattctcacagtttttctctcacatctatagCCAAGGCGCAAGCACCCTGTGCCCTGCAGACCTCCTT---------CTCCTAGTGCATGATCTTCAGCCCTCACCAGGTATGACAGAGGAGGAGCGGGGAGGAAGAGATAGTCACAGCCCTCAGgtgggtgaagacaagcagaatagggttaagctgctctaagatagacagaa #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTATGAG-TCTCCCTGTCCTGCAAGTCAATCAg aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagacCAAGTGCTGCTGTGCTACTATGAGCTCACCCT-TCCTGCAAGTCAATCCggtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from CESAR acCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagacCAAGTGCTGCTGTGCTACTATGAGCTCACCCTTCCTGCAAGTCAATCCggtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagACCAAGTGCTGCTGTGCTACTATGAGCTCACCCTTCCTGCAAGTCAATCCGgtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagACCAAGTGCTGCTGTGCTACTATGAGCTCACCCTTCCTGCAAGTCAATCCGgtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from Pairagon ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagACCAAGTGCTGCTGTGCTACTATGAGCTCACCCTTCCTGCAAGTCAATCCGgtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagACCAAGTGCTGCTGTGCTACTATGAGCTCACCCTTCCTGCAAGTCAATCCGgtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagACCAAGTGCTGCTGTGCTACTATGAGCTCACCCTTCCTGCAAGTCAATCCGgtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from GeneWise ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagACCAAGTGCTGCTGTGCTACTATGAGCTCACCCTTCCTGCAAGTCAATCCGgtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAG-AAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGCAAAGCAA-GGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGCAAAGCAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGCAAAGCAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGCAAAGCAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGCAAAGCAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGCAAAGCAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGCAAAGCAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGCAAAGCAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc #### Incenp_ID2611_8 --> 1 - 0 Original Alignment gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAG-CAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcaggAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCCAACTGG-AGATGAAGAACTGAAGCCCTGCCAGAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from CESAR gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcaggAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCCAACTGGAGATGAAGAACTGAAGCCCTGCCAGAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from Spaln_aa2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCCAACTGGAGATGAAGAACTGAAGCCCTGCCAGAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from Spaln_nt2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCCAACTGGAGATGAAGAACTGAAGCCCTGCCAGAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from Pairagon GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCCAACTGGAGATGAAGAACTGAAGCCCTGCCAGAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from Exonerate_protein2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCCAACTGGAGATGAAGAACTGAAGCCCTGCCAGAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from Exonerate_coding2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCCAACTGGAGATGAAGAACTGAAGCCCTGCCAGAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from GeneWise GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCCAACTGGAGATGAAGAACTGAAGCCCTGCCAGAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCA-AACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCACAACCTTATAA-TAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTggtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCACAACCTTATAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTggtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCACAACCTTATAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCACAACCTTATAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCA-AACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCACAACCTTAT-AATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCACAACCTTATAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCACAACCTTATAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCACAACCTTATAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATG-GAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctaggtCGGCACAATCTAAGATTAATTATGCGAATATT-ACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctaggtCGGCACAATCTAAGATTAATTATGCGAATATTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATATTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATATTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATG-GAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATA-TTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATATTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATATTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGCGAATATTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTC-CTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa accaccccacttcaacatcccctcttccctgtttcttccctatcttacaggcTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCT-CCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa accaccccacttcaacatcccctcttccctgtttcttccctatcttacaggcTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCT-CCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCT-CCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCCTATCCTCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg #### Kat5_ID1115_7 --> 0 - 0 Original Alignment AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAAT-TGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCT-GGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from CESAR AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from Spaln_aa2Genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from Spaln_nt2Genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from Pairagon AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from Exonerate_protein2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from Exonerate_coding2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from GeneWise AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTG-GTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGCGTTTCAC-AACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGCGTTTCACAACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGCGTTTCACAACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGCGTTTCACAACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from Pairagon AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGCGTTTCACAACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGCGTTTCACAACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGCGTTTCACAACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from GeneWise AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGCGTTTCACAACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGC-CTGCAACCCAACCACCGCTCAACG catccccacactacccactctagaaggactcctcccccgcttacctgcagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCCTACAAC-CAACCACCGCTCAACGgtaagttgactgctcgcaggaacattcatcctcatacccacctcctgcgc Alignment from CESAR CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccccacactacccactctagaaggactcctcccccgcttacctgcagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCCTACAACCAACCACCGCTCAACGgtaagttgactgctcgcaggaacattcatcctcatacccacctcctgcgc Alignment from Spaln_aa2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccccacactacccactctagaaggactcctcccccgcttacctgcagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCCTACAACCAACCACCGCTCAACGgtaagttgactgctcgcaggaacattcatcctcatacccacctcctgcgc Alignment from Spaln_nt2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccccacactacccactctagaaggactcctcccccgcttacctgcagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCCTACAACCAACCACCGCTCAACGgtaagttgactgctcgcaggaacattcatcctcatacccacctcctgcgc Alignment from Pairagon CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccccacactacccactctagaaggactcctcccccgcttacctgcagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCCTACAACCAACCACCGCTCAACGgtaagttgactgctcgcaggaacattcatcctcatacccacctcctgcgc Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccccacactacccactctagaaggactcctcccccgcttacctgcagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCCTACAACCAACCACCGCTCAACGgtaagttgactgctcgcaggaacattcatcctcatacccacctcctgcgc Alignment from Exonerate_coding2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccccacactacccactctagaaggactcctcccccgcttacctgcagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCCTACAACCAACCACCGCTCAACGgtaagttgactgctcgcaggaacattcatcctcatacccacctcctgcgc Alignment from GeneWise CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catccccacactacccactctagaaggactcctcccccgcttacctgcagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCCTACAACCAACCACCGCTCAACGgtaagttgactgctcgcaggaacattcatcctcatacccacctcctgcgc #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTG-GACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGCGACTTACAGA-GATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGCGACTTACAGAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGCGACTTACAGAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGCGACTTACAGAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTG-GACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGCGACTTACAG-AGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGCGACTTACAGAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGCGACTTACAGAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGCGACTTACAGAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTC-TATGTCCATTACATTGACt ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagcaCTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCCGAAAGCTTTTCCTATG-TTATTACATTGACtgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from CESAR ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagcaCTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCCGAAAGCTTTTCCTATGTTATTACATTGACtgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCCGAAAGCTTTTCCTATGTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCCGAAAGCTTTTCCTATGTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from Pairagon CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTT-CTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCCGAAAGCTTTTCCTATGT-TATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCCGAAAGCTTTTCCTATGTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCCGAAAGCTTTTCCTATGTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from GeneWise CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCCGAAAGCTTTTCCTATGTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAGGACGGCGTGGTGACCATT-GAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTCGAGGAAT-CATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTCGAGGAATCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTCGAGGAATCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTCGAGGAATCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from Pairagon AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTCGAGGAATCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from Exonerate_protein2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTCGAGGAATCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTCGAGGAATCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTCGAGGAATCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCC-ATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCCATCTATG-CATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Pairagon GAAATGCTCGACATCATGAAGT-CCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCCATCTATG-CATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCCATCTATGCATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca #### Kcnip2_ID9607_5 --> 0 - 1 Original Alignment GAATGTCCCAGCGGAATTGTCAACGAG-GAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAACAAGAACTTCA-GCAAGTTTATTCACAGTTCTTTCCACAAGAGggtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from CESAR GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAACAAGAACTTCAGCAAGTTTATTCACAGTTCTTTCCACAAGAGggtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from Spaln_aa2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAACAAGAACTTCAGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from Spaln_nt2Genome GAATGTCCCAGCGGAATTGTCAACGAGGA-GAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAACAAGAACTTC-AGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from Pairagon GAATGTCCCAGCGGAATTGTCAACGAG-GAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAACAAGAACTTC-AGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from Exonerate_protein2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAACAAGAACTTCAGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from Exonerate_coding2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAACAAGAACTTCAGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from GeneWise GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAACAAGAACTTCAGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTT-GTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTCGTTTGTC-AATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTgtgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from CESAR GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTCGTTTGTCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTgtgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTCGTTTGTCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTCGTTTGTCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTT-GTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTCGTTTGT-CAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTCGTTTGTCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTCGTTTGTCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from GeneWise GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTCGTTTGTCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTG-AAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatag------GTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTC-AAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatag------GTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from Spaln_aa2Genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatagGTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from Spaln_nt2Genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTG-AAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatagGTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTC-AAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGCCA---GGTACAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from Pairagon GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTG-AAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatagGTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTC-AAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGCCAGGT---ACAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from Exonerate_protein2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatagGTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from Exonerate_coding2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttctttctataaacacattctccattctcatctttgtctcatagGTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAgtagtgagaagcgaaaagaaactaataacattctaagatcctcacataca Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAGGTT ttttacttctttctataaacacattctccattctcatctttgtctcatagGTGCAAATTTTGGATTCACAGTCTGTTTTGTTGCAAAGACCCTCAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTCAGTTTTTCTAAAGTAgtgagaagcgaaaagaaactaataacattctaagatcctcacataca #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATC-AATGTTTTGAAGAACAGTGAAAAGTCAaa tggaatgaaagtctttgcagtactgttggtttttttttttttaaatgcagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTTGGGAATGTGTGTCCAATGTTT-AAAGAACAGTGAAAAGTCAaagtgagtgtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa tggaatgaaagtctttgcagtactgttggtttttttttttttaaatgcagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTTGGGAATGTGTGTCCAATGTTTAAAGAACAGTGAAAAGTCAaagtgagtgtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA tggaatgaaagtctttgcagtactgttggtttttttttttttaaatgcagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTTGGGAATGTGTGTCCAATGTTTAAAGAACAGTGAAAAGTCAAAgtgagtgtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA tggaatgaaagtctttgcagtactgttggtttttttttttttaaatgcagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTTGGGAATGTGTGTCCAATGTTTAAAGAACAGTGAAAAGTCAAAgtgagtgtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA tggaatgaaagtctttgcagtactgttggtttttttttttttaaatgcagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTTGGGAATGTGTGTCCAATGTTTAAAGAACAGTGAAAAGTCAAAgtgagtgtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA tggaatgaaagtctttgcagtactgttggtttttttttttttaaatgcagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTTGGGAATGTGTGTCCAATGTTTAAAGAACAGTGAAAAGTCAAAgtgagtgtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA tggaatgaaagtctttgcagtactgttggtttttttttttttaaatgcagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTTGGGAATGTGTGTCCAATGTTTAAAGAACAGTGAAAAGTCAAAgtgagtgtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA tggaatgaaagtctttgcagtactgttggtttttttttttttaaatgcagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCTTGGGAATGTGTGTCCAATGTTTAAAGAACAGTGAAAAGTCAAAgtgagtgtccttagtgccattatgtaaatctaactttgtgtgcttttgaa #### Kif20b_ID7009_14 --> 1 - 0 Original Alignment gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTC-AAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgatatttttgattaagtcatcttttagacagtgtgttcttgcccttaggGAGACAGTTATTCATCAGCGGGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATTTTTCGAAGATC-GGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGATATAGAACTAGACACTGAAgtaatttgatgataacattaaaaatcttgatattttctcacgtgatctct Alignment from CESAR gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgatatttttgattaagtcatcttttagacagtgtgttcttgcccttaggGAGACAGTTATTCATCAGCGGGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATTTTTCGAAGATCGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGATATAGAACTAGACACTGAAgtaatttgatgataacattaaaaatcttgatattttctcacgtgatctct Alignment from Spaln_aa2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgatatttttgattaagtcatcttttagacagtgtgttcttgcccttagGGAGACAGTTATTCATCAGCGGGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATTTTTCGAAGATCGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGATATAGAACTAGACACTGAAgtaatttgatgataacattaaaaatcttgatattttctcacgtgatctct Alignment from Spaln_nt2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgatatttttgattaagtcatcttttagacagtgtgttcttgcccttagGGAGACAGTTATTCATCAGCGGGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATTTTTCGAAGATCGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGATATAGAACTAGACACTGAAgtaatttgatgataacattaaaaatcttgatattttctcacgtgatctct Alignment from Pairagon GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgatatttttgattaagtcatcttttagacagtgtgttcttgcccttagGGAGACAGTTATTCATCAGCGGGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATTTTTCGAAGATCGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGATATAGAACTAGACACTGAAgtaatttgatgataacattaaaaatcttgatattttctcacgtgatctct Alignment from Exonerate_protein2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgatatttttgattaagtcatcttttagacagtgtgttcttgcccttagGGAGACAGTTATTCATCAGCGGGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATTTTTCGAAGATCGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGATATAGAACTAGACACTGAAgtaatttgatgataacattaaaaatcttgatattttctcacgtgatctct Alignment from Exonerate_coding2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgatatttttgattaagtcatcttttagacagtgtgttcttgcccttagGGAGACAGTTATTCATCAGCGGGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATTTTTCGAAGATCGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGATATAGAACTAGACACTGAAgtaatttgatgataacattaaaaatcttgatattttctcacgtgatctct Alignment from GeneWise GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgatatttttgattaagtcatcttttagacagtgtgttcttgcccttagGGAGACAGTTATTCATCAGCGGGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATTTTTCGAAGATCGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGATATAGAACTAGACACTGAAgtaatttgatgataacattaaaaatcttgatattttctcacgtgatctct #### Klc2_ID852_14 --> 1 - 0 Original Alignment gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAG-AGTGTGGAAGAGCCAGTCCAG gccaaacccctcctttacttcctgttggtctcaagtttacattgtcccaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCA-GAAGCCC---CAGgtaagtatgaggggatacttatactaagtagcctacacttgcagatgcag Alignment from CESAR gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG gccaaacccctcctttacttcctgttggtctcaagtttacattgtcccaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCAGAAGCCC---CAGgtaagtatgaggggatacttatactaagtagcctacacttgcagatgcag Alignment from Spaln_aa2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG gccaaacccctcctttacttcctgttggtctcaagtttacattgtcccagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCAGAAGCCC---CAGgtaagtatgaggggatacttatactaagtagcctacacttgcagatgcag Alignment from Spaln_nt2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAG-AGTGTGGAAGAGCCAGTCCAG gccaaacccctcctttacttcctgttggtctcaagtttacattgtcccagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGT-CAGAAGCC---CCAGgtaagtatgaggggatacttatactaagtagcctacacttgcagatgcag Alignment from Pairagon GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGT----------CCAG gccaaacccctcctttacttcctgttggtctcaagtttacattgtcccagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAG-------------CAGTGTCAGAAGCCCCAGgtaagtatgaggggatacttatactaagtagcctacacttgcagatgcag Alignment from Exonerate_protein2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG gccaaacccctcctttacttcctgttggtctcaagtttacattgtcccagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCAGAAGCCC---CAGgtaagtatgaggggatacttatactaagtagcctacacttgcagatgcag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG gccaaacccctcctttacttcctgttggtctcaagtttacattgtcccagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTCAGAAGCCC---CAGgtaagtatgaggggatacttatactaagtagcctacacttgcagatgcag #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCT-GCAGCTGAGTGGAGTGGG tgcaagacttcatgtatacttttgtcggttgttgttgctttcttttgcagGGCCTAGATCCTGCTAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACAAGGACACTGCCGTGGCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTAGACCTGGAAGAGTCAGAGCCTCGCAG-TGAGTGGAGCGGAgtgagggtgtaaccagaggtgagcggtaaggctaccatgaatggacccca Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tgcaagacttcatgtatacttttgtcggttgttgttgctttcttttgcagGGCCTAGATCCTGCTAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACAAGGACACTGCCGTGGCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTAGACCTGGAAGAGTCAGAGCCTCGCAGTGAGTGGAGCGGAgtgagggtgtaaccagaggtgagcggtaaggctaccatgaatggattcct Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tgcaagacttcatgtatacttttgtcggttgttgttgctttcttttgcagGGCCTAGATCCTGCTAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACAAGGACACTGCCGTGGCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTAGACCTGGAAGAGTCAGAGCCTCGCAGTGAGTGGAGCGGAgtgagggtgtaaccagaggtgagcggtaaggctaccatgaatggacccca Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tgcaagacttcatgtatacttttgtcggttgttgttgctttcttttgcagGGCCTAGATCCTGCTAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACAAGGACACTGCCGTGGCAGTAGAGATGTGGTTGGGCCTC---CTGAGTTAGACCTGGAAGAGTCAGAGCCTCGCAGTGAGTGGAGCGGAgtgagggtgtaaccagaggtgagcggtaaggctaccatgaatggacccca Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tgcaagacttcatgtatacttttgtcggttgttgttgctttcttttgcagGGCCTAGATCCTGCTAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACAAGGACACTGCCGTGGCAGTAGAGATGTGGTTGGGCCTC---CTGAGTTAGACCTGGAAGAGTCAGAGCCTCGCAGTGAGTGGAGCGGAgtgagggtgtaaccagaggtgagcggtaaggctaccatgaatggacccca Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tgcaagacttcatgtatacttttgtcggttgttgttgctttcttttgcagGGCCTAGATCCTGCTAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACAAGGACACTGCCGTGGCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTAGACCTGGAAGAGTCAGAGCCTCGCAGTGAGTGGAGCGGAgtgagggtgtaaccagaggtgagcggtaaggctaccatgaatggacccca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tgcaagacttcatgtatacttttgtcggttgttgttgctttcttttgcagGGCCTAGATCCTGCTAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACAAGGACACTGCCGTGGCAGTAGAGATGTGGTTGGGCCTCCT---GAGTTAGACCTGGAAGAGTCAGAGCCTCGCAGTGAGTGGAGCGGAgtgagggtgtaaccagaggtgagcggtaaggctaccatgaatggacccca #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAA-GCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagcCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAGCGCTACACACA-ACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACA---CTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagcCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAGCGC---TACACACAACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAGCGCTACACACAACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAGCGCTACACACAACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAA-GCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAGCGCTACACACA-ACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAGCGCTACACACAACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAGCGCTACACACAACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat #### Klc2_ID860_6 --> 0 - 0 Original Alignment GTGGCTGCGACCCTCAACAATCTG-GCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTG------GCCCTCAATAATCTGCGCTGTGCTTT-TGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from CESAR GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGGCC------CTCAATAATCTGCGCTGTGCTTTTGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from Spaln_aa2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGGCC------CTCAATAATCTGCGCTGTGCTTTTGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from Spaln_nt2Genome GTGGCTGCGACCCTCAACAATCTG-GCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGG------CCCTCAATAATCTGCGCTGTGCT-TTTGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from Pairagon GTGGCTGCGACCCTCAACAATCTG-GCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGG------CCCTCAATAATCTGCGCTGTGCTTT-TGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from Exonerate_protein2genome GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGGCC------CTCAATAATCTGCGCTGTGCTTTTGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from Exonerate_coding2genome gattccttcagggccctgaatgaagacaacacctagtcctcgttctacaggtggccctcaataatctgcgctgtgcttttggcaaacgaggtaagtaccaggaagctgagccactatgcaaaagggcacttgaaatccgagagaaggtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from GeneWise GTGGCTGCGACCCTCAACAATCTGGCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGGCC------CTCAATAATCTGCGCTGTGCTTTTGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTAC-AGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACCAGCCTCA-CCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACCAGCCTCACCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACCAGCCTCACCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACCAGCCTCACCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTA-CAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACCAGCCTCA-CCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACCAGCCTCACCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACCAGCCTCACCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACCAGCCTCACCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAAC-ATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACCATTACTCGAT-TGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACCATTACTCGATTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACCATTACTCGATTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACCATTACTCGATTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAA-CATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACCATTACTCGAT-TGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACCATTACTCGATTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACCATTACTCGATTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACCATTACTCGATTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAG-TTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGCTTCA-GTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGCTTCAGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGCTTCAGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGCTTCAGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGCTTCAGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGCTTCAGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGCTTCAGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGCTTCAGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGC-TTGGAGGATGGACCAAAGAGATATa tgcctgggggacctcttatctaacccataacccaatgctcctctttctagGAGTGTGATAATCTCTGGTGGGATGCTTTCACAACCGAGTTCTTTGAAGATGATGCCATGCTCACCATCACCTTTTGCCCTGAAGGATG-GCCAAACAGGTACagtaaggtagctctatgggagacactgtcacaccttcgttatgtatttctt Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa tgcctgggggacctcttatctaacccataacccaatgctcctctttctagGAGTGTGATAATCTCTGGTGGGATGCTTTCACAACCGAGTTCTTTGAAGATGATGCCATGCTCACCATCACCTTTTGCCCTGAAGGATGGCCAAACAGGTACagtaaggtagctctatgggagacactgtcacaccttcgttatgtatttctt Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccataacccaatgctcctctttctagGAGTGTGATAATCTCTGGTGGGATGCTTTCACAACCGAGTTCTTTGAAGATGATGCCATGCTCACCATCACCTTTTGCCCTGAAGGATGGCCAAACAGGTACAgtaaggtagctctatgggagacactgtcacaccttcgttatgtatttctt Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCT-TGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccataacccaatgctcctctttctagGAGTGTGATAATCTCTGGTGGGATGCTTTCACAACCGAGTTCTTTGAAGATGATGCCATGCTCACCATCACCTTTTGCCCTGAAGGATGG-CCAAACAGGTACAgtaaggtagctctatgggagacactgtcacaccttcgttatgtatttctt Alignment from Pairagon GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTG-CTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccataacccaatgctcctctttctagGAGTGTGATAATCTCTGGTGGGATGCTTTCACAACCGAGTTCTTTGAAGATGATGCCATGCTCACCATCACCTTTTGCCCTGAAGGATGG-CCAAACAGGTACAgtaaggtagctctatgggagacactgtcacaccttcgttatgtatttctt Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccataacccaatgctcctctttctagGAGTGTGATAATCTCTGGTGGGATGCTTTCACAACCGAGTTCTTTGAAGATGATGCCATGCTCACCATCACCTTTTGCCCTGAAGGATGGCCAAACAGGTACAgtaaggtagctctatgggagacactgtcacaccttcgttatgtatttctt Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccataacccaatgctcctctttctagGAGTGTGATAATCTCTGGTGGGATGCTTTCACAACCGAGTTCTTTGAAGATGATGCCATGCTCACCATCACCTTTTGCCCTGAAGGATGGCCAAACAGGTACAgtaaggtagctctatgggagacactgtcacaccttcgttatgtatttctt Alignment from GeneWise GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccataacccaatgctcctctttctagGAGTGTGATAATCTCTGGTGGGATGCTTTCACAACCGAGTTCTTTGAAGATGATGCCATGCTCACCATCACCTTTTGCCCTGAAGGATGGCCAAACAGGTACAgtaaggtagctctatgggagacactgtcacaccttcgttatgtatttctt #### Lgals12_ID2190_3 --> 1 - 0 Original Alignment gTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTC-CGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttaggTTTCAGGTTGACTTCCAATGTAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCCATTTCA-CCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGTCAG---GGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from CESAR gTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttaggTTTCAGGTTGACTTCCAATGTAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCCATTTCACCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGT---CAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from Spaln_aa2Genome GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCCATTTCACCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGT---CAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from Spaln_nt2Genome GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCCATTTCACCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATA---GTCAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from Pairagon GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCCATTTCACCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATA---GTCAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from Exonerate_protein2genome GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCCATTTCACCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGT---CAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from Exonerate_coding2genome GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCCATTTCACCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGT---CAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat Alignment from GeneWise GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG cctttttaggttttatgtctgtaggaactgttgttttgttcttctcttagGTTTCAGGTTGACTTCCAATGTAGGTGCTGCCTGCACCCTCAGCCAGATGTTGCCTTCCCATTTCACCCTCAATACTACACTGTCAAACCCCATGTGATCTGCAATAGT---CAGGGTGGACTTTGGCAAAAAGAGATCCAGTGGCCAGAGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTTTTTCTCTTTGAAAATGAAGAGGTGAAGgttagaagaaggttgtaaatctaaaaggtataccatataacactccggat #### Lipf_ID6846_2 --> 0 - 1 Original Alignment AGTCAGATGATAACT-TACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg atgttaaacctctccttatactgttttttttcctgaatttttccctccagAGTCAGATGATAACTCTATT-GGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCTTATGGCAAGAAAAACTCTGAGAACATAggtaagtacatcatctatttgggaggaaaaatcctgggaatgccactccat Alignment from CESAR AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg atgttaaacctctccttatactgttttttttcctgaatttttccctccagAGTCAGATGATAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCTTATGGCAAGAAAAACTCTGAGAACATAggtaagtacatcatctatttgggaggaaaaatcctgggaatgccactccat Alignment from Spaln_aa2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG atgttaaacctctccttatactgttttttttcctgaatttttccctccagAGTCAGATGATAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCTTATGGCAAGAAAAACTCTGAGAACATAGgtaagtacatcatctatttgggaggaaaaatcctgggaatgccactccat Alignment from Spaln_nt2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG atgttaaacctctccttatactgttttttttcctgaatttttccctccagAGTCAGATGATAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCTTATGGCAAGAAAAACTCTGAGAACATAGgtaagtacatcatctatttgggaggaaaaatcctgggaatgccactccat Alignment from Pairagon AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG atgttaaacctctccttatactgttttttttcctgaatttttccctccagAGTCAGATGATAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCTTATGGCAAGAAAAACTCTGAGAACATAGgtaagtacatcatctatttgggaggaaaaatcctgggaatgccactccat Alignment from Exonerate_protein2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG atgttaaacctctccttatactgttttttttcctgaatttttccctccagAGTCAGATGATAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCTTATGGCAAGAAAAACTCTGAGAACATAGgtaagtacatcatctatttgggaggaaaaatcctgggaatgccactccat Alignment from Exonerate_coding2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG atgttaaacctctccttatactgttttttttcctgaatttttccctccagAGTCAGATGATAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCTTATGGCAAGAAAAACTCTGAGAACATAGgtaagtacatcatctatttgggaggaaaaatcctgggaatgccactccat Alignment from GeneWise AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG atgttaaacctctccttatactgttttttttcctgaatttttccctccagAGTCAGATGATAACTCTATTGGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCTTATGGCAAGAAAAACTCTGAGAACATAGgtaagtacatcatctatttgggaggaaaaatcctgggaatgccactccat #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGT-GACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagatATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTCGACT-TCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAggtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagatATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTCGACTTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAggtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTCGACTTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTCGACTTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGG--------TGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTCGACTTCTGAC--------CAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTCGACTTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTCGACTTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagacCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTCGGCCACTACA-GTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagacCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTCGGCCACTACAGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTCGGCCACTACAGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTCGGCCACTACAGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTCGGCCACTAC-AGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTCGGCCACTACAGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTCGGCCACTACAGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg #### Ltbp3_ID1268_20 --> 2 - 1 Original Alignment agGTGGAGCAGCCCCACCACAAG-AAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg tcaggactattataactgtctctatgaatttagtttcctcttcttttaagagGTGGAGCAGCCCCACCATAAGCAAGGAGT-CTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from CESAR agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg tcaggactattataactgtctctatgaatttagtttcctcttcttttaagagGTGGAGCAGCCCCACCATAAGCAAGGAGTCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from Spaln_aa2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGCAAGGAGTCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from Spaln_nt2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGCAAGGAGTCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from Pairagon AGGTGGAGCAGCCCCACCACAAG-AAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGCAAGGAGT-CTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from Exonerate_protein2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGCAAGGAGTCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from Exonerate_coding2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGCAAGGAGTCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc Alignment from GeneWise AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcaggactattataactgtctctatgaatttagtttcctcttcttttaagAGGTGGAGCAGCCCCACCATAAGCAAGGAGTCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATGTCACTCAGCAGGAATGCTGTTGCTCCCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtataggcaatagatcaaatcatggtcctatcaaactgttcttagaactc #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTAC-ACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg agatgggatagtataagtgaacccaccactacattttcttgtttttgaagctGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATCACTCAGG-CAACAACATTGTGAACTATGGCATTCCTACCCACCGGggtgggtaagctagtttagtttaagggttctggttgaggatgccattttgc Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg agatgggatagtataagtgaacccaccactacattttcttgtttttgaagctGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATCACTCAGGCAACAACATTGTGAACTATGGCATTCCTACCCACCGGggtgggtaagctagtttagtttaagggttctggttgaggatgccattttgc Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agatgggatagtataagtgaacccaccactacattttcttgtttttgaagCTGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATCACTCAGGCAACAACATTGTGAACTATGGCATTCCTACCCACCGGGgtgggtaagctagtttagtttaagggttctggttgaggatgccattttgc Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agatgggatagtataagtgaacccaccactacattttcttgtttttgaagCTGAATTTCATAG---GTGTCCTGATGGTAAAGGCTATCACTCAGGCAACAACATTGTGAACTATGGCATTCCTACCCACCGGGgtgggtaagctagtttagtttaagggttctggttgaggatgccattttgc Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTA-CACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agatgggatagtataagtgaacccaccactacattttcttgtttttgaagCTGAATTTCATAG---GTGTCCTGATGGTAAAGGCTATCACTCAGG-CAACAACATTGTGAACTATGGCATTCCTACCCACCGGGgtgggtaagctagtttagtttaagggttctggttgaggatgccattttgc Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agatgggatagtataagtgaacccaccactacattttcttgtttttgaagCTGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATCACTCAGGCAACAACATTGTGAACTATGGCATTCCTACCCACCGGGgtgggtaagctagtttagtttaagggttctggttgaggatgccattttgc Alignment from Exonerate_coding2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agatgggatagtataagtgaacccaccactacattttcttgtttttgaagCTGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATCACTCAGGCAACAACATTGTGAACTATGGCATTCCTACCCACCGGGgtgggtaagctagtttagtttaagggttctggttgaggatgccattttgc Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agatgggatagtataagtgaacccaccactacattttcttgtttttgaagCTGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATCACTCAGGCAACAACATTGTGAACTATGGCATTCCTACCCACCGGGgtgggtaagctagtttagtttaagggttctggttgaggatgccattttgc #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATC-GCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagatGTCATCCACACAGTGGGGCTCATTCGCAGTGGGCC-ACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagatGTCATCCACACAGTGGGGCTCATTCGCAGTGGGCCACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTCGCAGTGGGCCACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCAT-CGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTCGCAGTGGGCC-ACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCA-TCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTCGCAGTGGGCC-ACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTCGCAGTGGGCCACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from Exonerate_coding2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTGGCTTTCCCG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTCGCAGTGGGCCACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTGTA---CCGttcaagtggttgaagcgtcaactacaacataccagaatctc Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTGGCTTTCCCG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTCGCAGTGGGCCACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTG------------TGTCCAgttgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttaggcTACCCTAATGAGGAGGCTCGCAG-AGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttaggcTACCCTAATGAGGAGGCTCGCAGAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGGCTCGCAGAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGGCTCGCAGAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGGCTCGCAGAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGGCTCGCAGAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Exonerate_coding2genome TGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagCTTCTTTTTTCTTTCTATTTAGGCTACCCTAATGAGGAGGCTCGCAGAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from GeneWise TGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagCTTCTTTTTTCTTTCTATTTAGGCTACCCTAATGAGGAGGCTCGCAGAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTA-ACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagtTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTACACATTACCCA-TCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagtTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTACACATTACCCATCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTACACATTACCCATCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTA-ACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTACACATTACCCAT-CCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTA-ACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTACACATTACCCAT-CCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTACACATTACCCATCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTACACATTACCCATCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTACACATTACCCATCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGC-AATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagtgGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCCAATGGAGAGA-GCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagtgGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCCAATGGAGAGAGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCCAATGGAGAGAGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCCAATGGAGAGAGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAG-CAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCCAATGGAGAGA-GCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCCAATGGAGAGAGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCCAATGGAGAGAGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagcttgctgtaaattaggactccatcggcttggtcttcccccaagTGGAACCTACAGAATCAGGACAGACATGGAGTCGCCAGTCTCCTGGACGTCTTGAAGATTCTAGCCAATGGAGAGAGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtaagcacttcagaacacttatatcctggtgttctgctttttgggggcct #### Map4k2_ID1622_2 --> 0 - 1 Original Alignment GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAG-ATCGTCAAGCTAGACCCAg agggatcccagtgctgccccctacctatacccaaagccccctgcgtgcagGCTCGTGACACCGTCACATCCGAACTGGCTGCAGTGAAGCATTG-CAAGCTAGACCCAggtaagagcatgggcagagacaagtgagcctccacaaatcgaataagttgg Alignment from CESAR GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAg agggatcccagtgctgccccctacctatacccaaagccccctgcgtgcagGCTCGTGACACCGTCACATCCGAACTGGCTGCAGTGAAGCATTGCAAGCTAGACCCAggtaagagcatgggcagagacaagtgagcctccacaaatcgaataagttgg Alignment from Spaln_aa2Genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctacctatacccaaagccccctgcgtgcagGCTCGTGACACCGTCACATCCGAACTGGCTGCAGTGAAGCATTGCAAGCTAGACCCAGgtaagagcatgggcagagacaagtgagcctccacaaatcgaataagttgg Alignment from Spaln_nt2Genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctacctatacccaaagccccctgcgtgcagGCTCGTGACACCGTCACATCCGAACTGGCTGCAGTGAAGCATTGCAAGCTAGACCCAGgtaagagcatgggcagagacaagtgagcctccacaaatcgaataagttgg Alignment from Pairagon GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctacctatacccaaagccccctgcgtgcagGCTCGTGACACCGTCACATCCGAACTGGCTGCAGTGAAGCATTGCAAGCTAGACCCAGgtaagagcatgggcagagacaagtgagcctccacaaatcgaataagttgg Alignment from Exonerate_protein2genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctacctatacccaaagccccctgcgtgcagGCTCGTGACACCGTCACATCCGAACTGGCTGCAGTGAAGCATTGCAAGCTAGACCCAGgtaagagcatgggcagagacaagtgagcctccacaaatcgaataagttgg Alignment from Exonerate_coding2genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctacctatacccaaagccccctgcgtgcagGCTCGTGACACCGTCACATCCGAACTGGCTGCAGTGAAGCATTGCAAGCTAGACCCAGgtaagagcatgggcagagacaagtgagcctccacaaatcgaataagttgg Alignment from GeneWise GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctacctatacccaaagccccctgcgtgcagGCTCGTGACACCGTCACATCCGAACTGGCTGCAGTGAAGCATTGCAAGCTAGACCCAGgtaagagcatgggcagagacaagtgagcctccacaaatcgaataagttgg #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAG-GAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagggGACGACATCAGCTCTCTTCAGCAGCGAAATCACCA-CCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCaggtgggtctgttcatccccccaccctctggtgtccattgtgccaaccagca Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagggGACGACATCAGCTCTCTTCAGCAGCGAAATCACCACCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCaggtgggtctgttcatccccccaccctctggtgtccattgtgccacatctgt Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGCGAAATCACCACCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccaaccagca Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGCGAAATCACCACCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccaaccagca Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAG-GAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGCGAAATCACCA-CCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccaaccagca Alignment from Exonerate_protein2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGCGAAATCACCACCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccaaccagca Alignment from Exonerate_coding2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGCGAAATCACCACCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccaaccagca Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGCGAAATCACCACCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccaaccagca #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTGTGGATC-TGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg cccccaccctctggtgtccattgtgccacatctgtattattttattttaggAATGACCGATTGTGGATCCTGTATGG-GTTCTGTGGGGGAGGGTCACTACAGGAGGTTTACCATggtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from CESAR gAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg cccccaccctctggtgtccattgtgccacatctgtattattttattttaggAATGACCGATTGTGGATCCTGTATGGGTTCTGTGGGGGAGGGTCACTACAGGAGGTTTACCATggtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from Spaln_aa2Genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGTGGATCCTGTATGGGTTCTGTGGGGGAGGGTCACTACAGGAGGTTTACCATGgtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from Spaln_nt2Genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGTGGATCCTGTATGGGTTCTGTGGGGGAGGGTCACTACAGGAGGTTTACCATGgtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from Pairagon GAATGACCGATTGTGGAT-CTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGTGGATCCTGTATGG-GTTCTGTGGGGGAGGGTCACTACAGGAGGTTTACCATGgtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from Exonerate_protein2genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGTGGATCCTGTATGGGTTCTGTGGGGGAGGGTCACTACAGGAGGTTTACCATGgtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from Exonerate_coding2genome GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGTGGATCCTGTATGGGTTCTGTGGGGGAGGGTCACTACAGGAGGTTTACCATGgtacttaccagactccatggacctgtccttccctgatcacgatatcgggg Alignment from GeneWise GAATGACCGATTGTGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctctggtgtccattgtgccacatctgtattattttattttagGAATGACCGATTGTGGATCCTGTATGGGTTCTGTGGGGGAGGGTCACTACAGGAGGTTTACCATGgtacttaccagactccatggacctgtccttccctgatcacgatatcgggg #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment GGTGCCAACCTT-CTGCTCACTCTGCAGGGTGATGTCAAGCTGg aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCCTGCTCA-TCTGCAGGGTGATGTGAAGTTGggtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from CESAR GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCCTGCTCATCTGCAGGGTGATGTGAAGTTGggtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from Spaln_aa2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCCTGCTCATCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from Spaln_nt2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCCTGCTCATCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from Pairagon GGTGCCAACCTT-CTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCCTGCTCA-TCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from Exonerate_protein2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCCTGCTCATCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from Exonerate_coding2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCCTGCTCATCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from GeneWise GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCCTGCTCATCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAA-AGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagcaGATTTTGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGCAGGCATT-TTTCATTGGCACTCCATACtggtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagcaGATTTTGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGCAGGCATTTTTCATTGGCACTCCATACtggtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGCAGGCATTTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGCAGGCATTTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Pairagon CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAA------AAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGCAGGCA------TTTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGCAGGCATTTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGCAGGCATTTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGGGTGAGGCAACAGCATCTGTTGCCAAGCAGGCATTTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGAC-GTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcaggATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACCGTATGGG-ATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGaggtaggtttaatacttgcctcttgcctgtccccctgatgatccttgaccat Alignment from CESAR gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcaggATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACCGTATGGGATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGaggtaggtttaatacttgcctcttgcctgtccccctgatgatccttgactgt Alignment from Spaln_aa2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACCGTATGGGATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgaccat Alignment from Spaln_nt2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGAC-GTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACCGTATGGG-ATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgaccat Alignment from Pairagon GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGA-CGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACCGTATGGG-ATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgaccat Alignment from Exonerate_protein2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACCGTATGGGATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgaccat Alignment from Exonerate_coding2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACCGTATGGGATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgaccat Alignment from GeneWise GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACCGTATGGGATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgaccat #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAG-AGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccaggACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGCAGGCCCA-AGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccaggACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGCAGGCCCAAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGCAGGCCCAAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGCAGGCCCAAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGCAGGCCCAAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGCAGGCCCAAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGCAGGCCCAAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGCAGGCCCAAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACC-CAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaacatgacctggagggcagccaactgcacactgcttcccacattcagCATCCATTCACAACCCAGCATCTCCCTCCAGCGCTTCTTACCCCAACTCC-TGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtgggagcaggcagggaaccaggttagctcagcttggtgggaaggtggta Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaacatgacctggagggcagccaactgcacactgcttcccacattcagCATCCATTCACAACCCAGCATCTCCCTCCAGCGCTTCTTACCCCAACTCCTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtgggagcaggcagggaaccaggttagctcagcttggtgggaaggtggta Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaacatgacctggagggcagccaactgcacactgcttcccacattcagCATCCATTCACAACCCAGCATCTCCCTCCAGCGCTTCTTACCCCAACTCCTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtgggagcaggcagggaaccaggttagctcagcttggtgggaaggtggta Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaacatgacctggagggcagccaactgcacactgcttcccacattcagCATCCATTCACAACCCAGCATCTCCCTCCAGCGCTTCTTACCCCAACTCCTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtgggagcaggcagggaaccaggttagctcagcttggtgggaaggtggta Alignment from Pairagon CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCA-CCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaacatgacctggagggcagccaactgcacactgcttcccacattcagCATCCATTCACAACCCAGCATCTCCCTCCAGCGCTTCTTACCCCAACTCCT-GACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtgggagcaggcagggaaccaggttagctcagcttggtgggaaggtggta Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaacatgacctggagggcagccaactgcacactgcttcccacattcagCATCCATTCACAACCCAGCATCTCCCTCCAGCGCTTCTTACCCCAACTCCTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtgggagcaggcagggaaccaggttagctcagcttggtgggaaggtggta Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaacatgacctggagggcagccaactgcacactgcttcccacattcagCATCCATTCACAACCCAGCATCTCCCTCCAGCGCTTCTTACCCCAACTCCTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtgggagcaggcagggaaccaggttagctcagcttggtgggaaggtggta Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaacatgacctggagggcagccaactgcacactgcttcccacattcagCATCCATTCACAACCCAGCATCTCCCTCCAGCGCTTCTTACCCCAACTCCTGACAAGGCTAGTGACCCCCATCTAGGTACCCTCTCCCCTGAAGATAGTAAGCTTAAGgtgggagcaggcagggaaccaggttagctcagcttggtgggaaggtggta #### Map4k2_ID1634_13 --> 0 - 1 Original Alignment ACCCATGACATGTTTCCAGATACCATCCAT-TCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt ggtttccaggctgtagtgtgattcaggcgtattcctctttctactttaagACACATGATATGTTTCCAGATACCATCCATCTCCCATA-CCATCATGGTCCTGCTGAGAGGACTCCTTCAGAGATCCAGtgtgacgctcatggtggcaagaaaatgccgatctgatcaggtgtcagctgg Alignment from CESAR ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt ggtttccaggctgtagtgtgattcaggcgtattcctctttctactttaagACACATGATATGTTTCCAGATACCATCCATCTCCCATACCATCATGGTCCTGCTGAGAGGACTCCTTCAGAGATCCAGtgtgacgctcatggtggcaagaaaatgccgatctgatcaggtgtcagctgg Alignment from Spaln_aa2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT ggtttccaggctgtagtgtgattcaggcgtattcctctttctactttaagACACATGATATGTTTCCAGATACCATCCATCTCCCATACCATCATGGTCCTGCTGAGAGGACTCCTTCAGAGATCCAGTgtgacgctcatggtggcaagaaaatgccgatctgatcaggtgtcagctgg Alignment from Spaln_nt2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT ggtttccaggctgtagtgtgattcaggcgtattcctctttctactttaagACACATGATATGTTTCCAGATACCATCCATCTCCCATACCATCATGGTCCTGCTGAGAGGACTCCTTCAGAGATCCAGTgtgacgctcatggtggcaagaaaatgccgatctgatcaggtgtcagctgg Alignment from Pairagon ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT ggtttccaggctgtagtgtgattcaggcgtattcctctttctactttaagACACATGATATGTTTCCAGATACCATCCATCTCCCATACCATCATGGTCCTGCTGAGAGGACTCCTTCAGAGATCCAGTgtgacgctcatggtggcaagaaaatgccgatctgatcaggtgtcagctgg Alignment from Exonerate_protein2genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT ggtttccaggctgtagtgtgattcaggcgtattcctctttctactttaagACACATGATATGTTTCCAGATACCATCCATCTCCCATACCATCATGGTCCTGCTGAGAGGACTCCTTCAGAGATCCAGTgtgacgctcatggtggcaagaaaatgccgatctgatcaggtgtcagctgg Alignment from Exonerate_coding2genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT ggtttccaggctgtagtgtgattcaggcgtattcctctttctactttaagACACATGATATGTTTCCAGATACCATCCATCTCCCATACCATCATGGTCCTGCTGAGAGGACTCCTTCAGAGATCCAGTgtgacgctcatggtggcaagaaaatgccgatctgatcaggtgtcagctgg Alignment from GeneWise ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT ggtttccaggctgtagtgtgattcaggcgtattcctctttctactttaagACACATGATATGTTTCCAGATACCATCCATCTCCCATACCATCATGGTCCTGCTGAGAGGACTCCTTCAGAGATCCAGTgtgacgctcatggtggcaagaaaatgccgatctgatcaggtgtcagctgg #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGG-ACGCTCCTGGGAAAAGAGGAACTGAGTgg cttcacattttgtgtctacttctcttcatgaccagtgcctgttgccacagTGGGAGGAGGAGTGGCACGCTCCTGG-AAAAGAGGAACTGAGTgggtaattgagtgtggttgggaaagcaggggtgcaggcagaaccctgtcgaa Alignment from CESAR TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgg cttcacattttgtgtctacttctcttcatgaccagtgcctgttgccacagTGGGAGGAGGAGTGGCACGCTCCTGGAAAAGAGGAACTGAGTgggtaattgagtgtggttgggaaagcaggggtgcaggcagaaccctgtcgaa Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcacattttgtgtctacttctcttcatgaccagtgcctgttgccacagTGGGAGGAGGAGTGGCACGCTCCTGGAAAAGAGGAACTGAGTGGgtaattgagtgtggttgggaaagcaggggtgcaggcagaaccctgtcgaa Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcacattttgtgtctacttctcttcatgaccagtgcctgttgccacagTGGGAGGAGGAGTGGCACGCTCCTGGAAAAGAGGAACTGAGTGGgtaattgagtgtggttgggaaagcaggggtgcaggcagaaccctgtcgaa Alignment from Pairagon TGGGAGGAGGAGTGG-ACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcacattttgtgtctacttctcttcatgaccagtgcctgttgccacagTGGGAGGAGGAGTGGCACGCTCCT-GGAAAAGAGGAACTGAGTGGgtaattgagtgtggttgggaaagcaggggtgcaggcagaaccctgtcgaa Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcacattttgtgtctacttctcttcatgaccagtgcctgttgccacagTGGGAGGAGGAGTGGCACGCTCCTGGAAAAGAGGAACTGAGTGGgtaattgagtgtggttgggaaagcaggggtgcaggcagaaccctgtcgaa Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcacattttgtgtctacttctcttcatgaccagtgcctgttgccacagTGGGAGGAGGAGTGGCACGCTCCTGGAAAAGAGGAACTGAGTGGgtaattgagtgtggttgggaaagcaggggtgcaggcagaaccctgtcgaa Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcacattttgtgtctacttctcttcatgaccagtgcctgttgccacagTGGGAGGAGGAGTGGCACGCTCCTGGAAAAGAGGAACTGAGTGGgtaattgagtgtggttgggaaagcaggggtgcaggcagaaccctgtcgaa #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGC-TTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCCTTCTCCAAGG-CTTTAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCCTTCTCCAAGGCTTTAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCCTTCTCCAAGGCTTTAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from Spaln_nt2Genome ATGGGTGCCTGC-TTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCCTTCTCCAAGG-CTTTAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from Pairagon ATGGGTGCCTG-CTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCCTTCTCCAAGG-CTTTAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCCTTCTCCAAGGCTTTAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCCTTCTCCAAGGCTTTAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaactggttgttgttttttttttgcacagATGGGTGCCTGCCTTCTCCAAGGCTTTAATGGCTGCCCCCTGCAGATTCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtcagtgtaggtagactagaagcaataacttgggaaaccatgaccttggg #### Map4k2_ID1649_28 --> 2 - 1 Original Alignment agGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGAC-ACAGTCCTGGTCAGCTTTGAAc ctagcatggacccacccagtgagaggccctttttccctgtggggccacagagGGGATTCCAGGCCCTGCACAGCAAGTAATCCAGGTGGATCGGGACCAAAGTCC-GGTCAGCTTTGAAcgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from CESAR agGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc ctagcatggacccacccagtgagaggccctttttccctgtggggccacagagGGGATTCCAGGCCCTGCACAGCAAGTAATCCAGGTGGATCGGGACCAAAGTCCGGTCAGCTTTGAAcgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from Spaln_aa2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTGCACAGCAAGTAATCCAGGTGGATCGGGACCAAAGTCCGGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from Spaln_nt2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGAC-ACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTGCACAGCAAGTAATCCAGGTGGATCGGGACCAAAGTCC-GGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from Pairagon AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTGCACAGCAAGTAATCCAGGTGGATCGGGACCAAAGTCCGGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from Exonerate_protein2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTGCACAGCAAGTAATCCAGGTGGATCGGGACCAAAGTCCGGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from Exonerate_coding2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTGCACAGCAAGTAATCCAGGTGGATCGGGACCAAAGTCCGGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc Alignment from GeneWise AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC ctagcatggacccacccagtgagaggccctttttccctgtggggccacagAGGGGATTCCAGGCCCTGCACAGCAAGTAATCCAGGTGGATCGGGACCAAAGTCCGGTCAGCTTTGAACgtaagcacgtcagtgtcaaaagggggtcatagacagagtggtagtaaagc #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGG-TTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGCTTGCCCC-CACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from CESAR cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from Pairagon CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctgtataacccttcattctttgtgctcaacctctcttttttcattgcagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCAGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCTGTACACCCCAACAAGGCTTCTGGGCTTGCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtaagtttgtggggatagctgtacatttccagcaacatgttgcacacctg #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACT-CAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tccaaaggacctgtatgcaaagattgggctcctgttgcctctttccctagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTA-CAATGCAGAAAACAAGCGACCTGAGGAAGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCACCCTCCACAgtgagtcttgagctactacccacaggcctggcctcccccttatttgctct Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tccaaaggacctgtatgcaaagattgggctcctgttgcctctttccctagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTACAATGCAGAAAACAAGCGACCTGAGGAAGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCACCCTCCACAgtgagtcttgagctactacccacaggcctggcctcccccttatttgctct Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tccaaaggacctgtatgcaaagattgggctcctgttgcctctttccctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTACAATGCAGAAAACAAGCGACCTGAGGAAGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCACCCTCCACAgtgagtcttgagctactacccacaggcctggcctcccccttatttgctct Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tccaaaggacctgtatgcaaagattgggctcctgttgcctctttccctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTACAATGCAGAAAACAAGCGACCTGAGGAAGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCACCCTCCACAgtgagtcttgagctactacccacaggcctggcctcccccttatttgctct Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACT-CAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tccaaaggacctgtatgcaaagattgggctcctgttgcctctttccctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGT-ACAATGCAGAAAACAAGCGACCTGAGGAAGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCACCCTCCACAgtgagtcttgagctactacccacaggcctggcctcccccttatttgctct Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tccaaaggacctgtatgcaaagattgggctcctgttgcctctttccctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTACAATGCAGAAAACAAGCGACCTGAGGAAGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCACCCTCCACAgtgagtcttgagctactacccacaggcctggcctcccccttatttgctct Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tccaaaggacctgtatgcaaagattgggctcctgttgcctctttccctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTACAATGCAGAAAACAAGCGACCTGAGGAAGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCACCCTCCACAgtgagtcttgagctactacccacaggcctggcctcccccttatttgctct Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG tccaaaggacctgtatgcaaagattgggctcctgttgcctctttccctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTACAATGCAGAAAACAAGCGACCTGAGGAAGAAACAGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCACCCTCCACAgtgagtcttgagctactacccacaggcctggcctcccccttatttgctct #### Mark2_ID2111_10 --> 0 - 1 Original Alignment CAAATTATG---------------AAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTAC-AAGGACCCCCGGCGGACAg tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATCAAGG-ACCCCGGCGAACGggtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from CESAR CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATCAAGGACCCCGGCGAACGggtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from Spaln_aa2Genome CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATCAAGGACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from Spaln_nt2Genome CAAATT--ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTA-CAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagcaaattatgaaagATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATCAAGGA-CCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from Pairagon CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATCAAGGACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from Exonerate_protein2genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagcaaattatgaaagatCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATCAAGGACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from Exonerate_coding2genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagcaaattatgaaagatCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATCAAGGACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from GeneWise ---------------CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAAGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATCAAGGACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc #### Mark2_ID2112_9 --> 0 - 0 Original Alignment GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTAC-ATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACCATGTCCA-TGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from CESAR GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACCATGTCCATGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from Spaln_aa2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACCATGTCCATGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from Spaln_nt2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACCATGTCCATGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from Pairagon GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTA-CATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACCATGTCCAT-GACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from Exonerate_protein2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACCATGTCCATGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from Exonerate_coding2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACCATGTCCATGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt Alignment from GeneWise GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ctttctagcaaagccttacatgtcggtctgtgctcacttgctctctgcagGAGCTACGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACCATGTCCATGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGAGgtaagaaacctaaaatcctagtcagcaaaggaaaatgccaattagctctt #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTACCTAGTGGCCCATGGC-AGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtaggaGAGGTGTTTGATTATCTAGTGGCTCATGGCCAGGATGAAAG-AAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from CESAR gaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtaggaGAGGTGTTTGATTATCTAGTGGCTCATGGCCAGGATGAAAGAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCCAGGATGAAAGAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCCAGGATGAAAGAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Pairagon GAGAGGTGTTTGATTACCTAGTGGCCCATGG-CAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCCAGGATGAAAG-AAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCCAGGATGAAAGAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCCAGGATGAAAGAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCCAGGATGAAAGAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac #### Mrpl11_ID767_2 --> 0 - 0 Original Alignment CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAG-AAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tcaaaaatttcagctctcatacttaaccagacttctggtctgttctgcagCGAGGTGTCTCAATTAACCAGTTCTGCAAAGAGTTCAATGAGCAAGACAA-GGACATTAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtgagaagacccattcactgacatacttcattggccctagaatgtttgtc Alignment from CESAR CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tcaaaaatttcagctctcatacttaaccagacttctggtctgttctgcagCGAGGTGTCTCAATTAACCAGTTCTGCAAAGAGTTCAATGAGCAAGACAAGGACATTAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtgagaagacccattcactgacatacttcattggccctagaatgtttgtc Alignment from Spaln_aa2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tcaaaaatttcagctctcatacttaaccagacttctggtctgttctgcagCGAGGTGTCTCAATTAACCAGTTCTGCAAAGAGTTCAATGAGCAAGACAAGGACATTAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtgagaagacccattcactgacatacttcattggccctagaatgtttgtc Alignment from Spaln_nt2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tcaaaaatttcagctctcatacttaaccagacttctggtctgttctgcagCGAGGTGTCTCAATTAACCAGTTCTGCAAAGAGTTCAATGAGCAAGACAAGGACATTAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtgagaagacccattcactgacatacttcattggccctagaatgtttgtc Alignment from Pairagon CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tcaaaaatttcagctctcatacttaaccagacttctggtctgttctgcagCGAGGTGTCTCAATTAACCAGTTCTGCAAAGAGTTCAATGAGCAAGACAAGGACATTAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtgagaagacccattcactgacatacttcattggccctagaatgtttgtc Alignment from Exonerate_protein2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tcaaaaatttcagctctcatacttaaccagacttctggtctgttctgcagCGAGGTGTCTCAATTAACCAGTTCTGCAAAGAGTTCAATGAGCAAGACAAGGACATTAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtgagaagacccattcactgacatacttcattggccctagaatgtttgtc Alignment from Exonerate_coding2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tcaaaaatttcagctctcatacttaaccagacttctggtctgttctgcagCGAGGTGTCTCAATTAACCAGTTCTGCAAAGAGTTCAATGAGCAAGACAAGGACATTAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtgagaagacccattcactgacatacttcattggccctagaatgtttgtc Alignment from GeneWise CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tcaaaaatttcagctctcatacttaaccagacttctggtctgttctgcagCGAGGTGTCTCAATTAACCAGTTCTGCAAAGAGTTCAATGAGCAAGACAAGGACATTAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtgagaagacccattcactgacatacttcattggccctagaatgtttgtc #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCT-GAGATCCCAGATCGTTTGGCAGAGg gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAAATCAGGGTTGGTTGCACATTCCAAGCTCGAGATCCCAG-TCATTTGGCAGAGggtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from CESAR GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAAATCAGGGTTGGTTGCACATTCCAAGCTCGAGATCCCAGTCATTTGGCAGAGggtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAAATCAGGGTTGGTTGCACATTCCAAGCTCGAGATCCCAGTCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCT-GAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAAATCAGGGTTGGTTGCACATTCCAAGCTCGAGATCCCAG-TCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCT-GAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAAATCAGGGTTGGTTGCACATTCCAAGCTCGAGATCCCAG-TCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAAATCAGGGTTGGTTGCACATTCCAAGCTCGAGATCCCAGTCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from Exonerate_coding2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAAATCAGGGTTGGTTGCACATTCCAAGCTCGAGATCCCAGTCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc Alignment from GeneWise GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG gcataaggtctgcaacaaaaccaagttgttcttcatgttcttcttcttagGAGTGCTTTTTCTATTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAAATCAGGGTTGGTTGCACATTCCAAGCTCGAGATCCCAGTCATTTGGCAGAGGgtacctacaaaactgggttgaacttgacattttctgttggcagcttgatc #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC-TCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCCTCCATCTCAA-TCGGCAGTCAAGCTTGCACATGAGTGCA------GCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCA------ATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCCTCCATCTCAATCGGCAGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCCTCCATCTCAATCGGCAGTCAAGCTTGCACATGAGTGCAGCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC-TCAAT-----TCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCCTCCATCTCAATCGGCAGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAG-------CTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCCTCCATCTCAA-TCGGCAGTCAAGCTTGCACATGAGTGCAGCTA------CCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCCTCCATCTCAATCGGCAGTCAAGCTTGCACATGAGTGCAGCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCCTCCATCTCAATCGGCAGTCAAGCTTGCACATGAGTGCAGCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCCTCCATCTCAATCGGCAGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGAT-TTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATG-CATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGCATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGCATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGCATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGAT-TTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATG-CATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGCATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGCATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGCATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCAAGCATAGTCCAG-TTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGCTTTT-TTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from CESAR CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGCTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGCTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGCTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from Pairagon CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGCTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGCTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGCTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc Alignment from GeneWise CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgagaacgcaggccaatttcacactcatgttttcgtcatgttttcagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGCTTTTTTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgttagtgtcaggtcaactgaagacctggaccagaggctatcgtgattccc #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTG-GCAACTATCGTCAAAGATCTGg gccaagcacccaggagatccttctctcatttctcccctttaaacccacaggcTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGCGCAACTA-CATCAAAGATCTGggtaagtaggatgacttttcaagctaggtcagatcttctatctcacactgc Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg gccaagcacccaggagatccttctctcatttctcccctttaaacccacaggcTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGCGCAACTACATCAAAGATCTGggtaagtaggatgacttttcaagctaggtcagatcttctatctcgtcattc Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGCGCAACTACATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcacactgc Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTG-GCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGCGCAACTA-CATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcacactgc Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTG-GCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGCGCAACTA-CATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcacactgc Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGCGCAACTACATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcacactgc Alignment from Exonerate_coding2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGCGCAACTACATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcacactgc Alignment from GeneWise --TCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGCGCAACTACATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctcacactgc #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCC-AATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCCAATCCAGTGG-ATTTGTGGCCACAAAGGACACCaggtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from CESAR ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCCAATCCAGTGGATTTGTGGCCACAAAGGACACCaggtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from Spaln_aa2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCCAATCCAGTGGATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from Spaln_nt2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCCAATCCAGTGGATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from Pairagon ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCT-CCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCCAATCCAGTGG-ATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from Exonerate_protein2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCCAATCCAGTGGATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from Exonerate_coding2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCCAATCCAGTGGATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga Alignment from GeneWise ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttctatgggcagtagtttctgcatttgaaccgctgcccctcttctagATGGCAGGCGCAGGGGTCCCTTTCTCTGCGAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCTGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCCAATCCAGTGGATTTGTGGCCACAAAGGACACCAGgtggggagggagtccagtgtgagaggctgacgacatcaatgtatgtagga #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCT-CCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCC-GGTGAAACTGAACTCACAAACAGACATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCCGGTGAAACTGAACTCACAAACAGACATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCCGGTGAAACTGAACTCACAAACAGACATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCCGGTGAAACTGAACTCACAAACAGACATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCCGGTGAAACTGAACTCACAAACAGACATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCCGGTGAAACTGAACTCACAAACAGACATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCCGGTGAAACTGAACTCACAAACAGACATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctgggacaatggatgcaccacctttccgtgtctgcagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCCGGTGAAACTGAACTCACAAACAGACATTACACCCAAGCCTCTCTGGCATCCTGTTATGAATGGGGACAAGGCTTGTGCAGATGTCCTTGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgtgctatattcatacttgtacacttcttagctaagtaaccaggtacac #### Myof_ID7493_9 --> 0 - 0 Original Alignment GTTTATAATTCC-CATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttggcacaattttgtattttaaaaaagGTTTATAATTCCCCATTCTTTGA-AGCAGATTGTTTTATGGGAGAATTTAAGgtaatagacacaaccattgtgttcaatgagataagaatgagagccactta Alignment from CESAR GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG taagggtccagaagcaaagaattttggcacaattttgtattttaaaaaagGTTTATAATTCCCCATTCTTTGAAGCAGATTGTTTTATGGGAGAATTTAAGgtaatagacacaaccattgtgttcaatgagataagaatgagagccactta Alignment from Spaln_aa2Genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttggcacaattttgtattttaaaaaagGTTTATAATTCCCCATTCTTTGAAGCAGATTGTTTTATGGGAGAATTTAAGgtaatagacacaaccattgtgttcaatgagataagaatgagagccactta Alignment from Spaln_nt2Genome GTTTATAATTCCC-ATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttggcacaattttgtattttaaaaaagGTTTATAATTCCCCATTCTTTGA-AGCAGATTGTTTTATGGGAGAATTTAAGgtaatagacacaaccattgtgttcaatgagataagaatgagagccactta Alignment from Pairagon GTTTATAATT-CCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttggcacaattttgtattttaaaaaagGTTTATAATTCCCCATTCTTTGA-AGCAGATTGTTTTATGGGAGAATTTAAGgtaatagacacaaccattgtgttcaatgagataagaatgagagccactta Alignment from Exonerate_protein2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttggcacaattttgtattttaaaaaagGTTTATAATTCCCCATTCTTTGAAGCAGATTGTTTTATGGGAGAATTTAAGgtaatagacacaaccattgtgttcaatgagataagaatgagagccactta Alignment from Exonerate_coding2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttggcacaattttgtattttaaaaaagGTTTATAATTCCCCATTCTTTGAAGCAGATTGTTTTATGGGAGAATTTAAGgtaatagacacaaccattgtgttcaatgagataagaatgagagccactta Alignment from GeneWise --------------------------------------------------GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG TGAGTGTCCAGAAGCAAAGAATTTTGGCACAATTTTGTATTTTAAAAAAGGTTTATAATTCCCCATTCTTTGAAGCAGATTGTTTTATGGGAGAATTTAAGgtaatagacacaaccattgtgttcaatgagataagaatgagagccactta #### Myrf_ID2714_23 --> 1 - 2 Original Alignment gCTTGGCAACTTCACCTACCACATC-CCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagaCTTGGCAACTTCACATACCATATCCCCAGTAA-CAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaagtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from CESAR gCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagaCTTGGCAACTTCACATACCATATCCCCAGTAACAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaagtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from Spaln_aa2Genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCACATACCATATCCCCAGTAACAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from Spaln_nt2Genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCACATACCATATCCCCAGTAACAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from Pairagon GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCACATACCATATCCCCAGTAACAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from Exonerate_protein2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCACATACCATATCCCCAGTAACAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from Exonerate_coding2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCACATACCATATCCCCAGTAACAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa Alignment from GeneWise GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gggaggcgaaactggcaaagtggcgtttacccgctggtgtccttccccagACTTGGCAACTTCACATACCATATCCCCAGTAACAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtatttgcgagtgcatgacctgacctgtgagtacaaagtgacaatacgaa #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTG-CAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTA-CATAGCTCTCGTGGTAGTCATGGCCTTCaggtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTACATAGCTCTCGTGGTAGTCATGGCCTTCaggtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTACATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTACATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTG-CAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTA-CATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTACATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTACATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTACATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAG-TTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gagtaatcaatgttaccccgaacccttgttgcactgcccatcatttacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGCTTATGCA-ACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtgagcgcgccagggaggtgggtagggatgggcgagataagaagagggag Alignment from CESAR GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gagtaatcaatgttaccccgaacccttgttgcactgcccatcatttacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGCTTATGCAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtgagcgcgccagggaggtgggtagggatgggcgagataagaagagggag Alignment from Spaln_aa2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatgttaccccgaacccttgttgcactgcccatcatttacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGCTTATGCAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgagcgcgccagggaggtgggtagggatgggcgagataagaagagggag Alignment from Spaln_nt2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatgttaccccgaacccttgttgcactgcccatcatttacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGCTTATGCAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgagcgcgccagggaggtgggtagggatgggcgagataagaagagggag Alignment from Pairagon GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAG-TTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatgttaccccgaacccttgttgcactgcccatcatttacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGCTTATGC-AACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgagcgcgccagggaggtgggtagggatgggcgagataagaagagggag Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatgttaccccgaacccttgttgcactgcccatcatttacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGCTTATGCAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgagcgcgccagggaggtgggtagggatgggcgagataagaagagggag Alignment from Exonerate_coding2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatgttaccccgaacccttgttgcactgcccatcatttacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGCTTATGCAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgagcgcgccagggaggtgggtagggatgggcgagataagaagagggag Alignment from GeneWise GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatgttaccccgaacccttgttgcactgcccatcatttacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGCTTATGCAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgagcgcgccagggaggtgggtagggatgggcgagataagaagagggag #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAG-GACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccataggtGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGCGACACAGGGG-TGTGGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccataggtGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGCGACACAGGGGTGTGGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGCGACACAGGGGTGTGGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGCGACACAGGGGTGTGGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAG-GACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGCGACACAGGGG-TGTGGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGCGACACAGGGGTGTGGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGCGACACAGGGGTGTGGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGCGACACAGGGGTGTGGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGG-CTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGCTTAGTGC-CTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGCTTAGTGCCTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGCTTAGTGCCTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGCTTAGTGCCTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGC-TGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGCTTAGTGC-CTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGCTTAGTGCCTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGCTTAGTGCCTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGCTTAGTGCCTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGAC-GTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATCGTGCTAT-GCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATCGTGCTATGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATCGTGCTATGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGA-CGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATCGTGCTAT-GCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGA-CGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATCGTGCTAT-GCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATCGTGCTATGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATCGTGCTATGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG ctttttaaatttaccctgtccccaaatacccttttctgaacctcatgaagGCCTCTAACCCGGGACAGTTT---AGTGATAGTGATCGTGCTATGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATCAACACCGACCTGCCAGATGAAGCATTAGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtatacgctgtggcccatgggcgtcccctgcataactggactgcaggaag #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAAC-AACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagaGTCAATCTCCCCCCCGAGCAGGTTACACAAGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACCAACA-GCGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagaGTCAATCTCCCCCCCGAGCAGGTTACACAAGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACCAACAGCGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCCGAGCAGGTTACACAAGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACCAACAGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCCGAGCAGGTTACACAAGTGACTGTGG---GGCTCCATTTCACTGAGACCACTGCCAACCAACAGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCCGAGCAGGTTACACAAGTGACTGTGG---GGCTCCATTTCACTGAGACCACTGCCAACCAACAGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCCGAGCAGGTTACACAAGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACCAACAGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCCGAGCAGGTTACACAAGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACCAACAGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggctgcttcctaggaaacactgctctctgatggtgtcttttcctagAGTCAATCTCCCCCCCGAGCAGGTTACACAAGTGACTGTGGGG---CTCCATTTCACTGAGACCACTGCCAACCAACAGCGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgcgtaagttgactttgccccaggacccctctcacctacttagctgcac #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTAT-CAGTTCTTCCGAGAGGCACTGca aaagagcactggctatgtctctaaagtgttgccctctgcccctcccacagcACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAACCATGGTGCCTATCCAGTTCT-CCAGGAGACACTTcagtgaggaataagactcaggctaagggtccaaatgtagttaggagacccag Alignment from CESAR cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca aaagagcactggctatgtctctaaagtgttgccctctgcccctcccacagcACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAACCATGGTGCCTATCCAGTTCTCCAGGAGACACTTcagtgaggaataagactcaggctaagggtccaaatgtagttaggagacccag Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctaaagtgttgccctctgcccctcccacagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAACCATGGTGCCTATCCAGTTCTCCAGGAGACACTTCAgtgaggaataagactcaggctaagggtccaaatgtagttaggagacccag Alignment from Spaln_nt2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATC-AGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctaaagtgttgccctctgcccctcccacagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAACCATGGTGCCTATCCAGTTC-TCCAGGAGACACTTCAgtgaggaataagactcaggctaagggtccaaatgtagttaggagacccag Alignment from Pairagon CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctaaagtgttgccctctgcccctcccacagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAACCATGGTGCCTATCCAGTTCTCCAGGAGACACTTCAgtgaggaataagactcaggctaagggtccaaatgtagttaggagacccag Alignment from Exonerate_protein2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctaaagtgttgccctctgcccctcccacagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAACCATGGTGCCTATCCAGTTCTCCAGGAGACACTTCAgtgaggaataagactcaggctaagggtccaaatgtagttaggagacccag Alignment from Exonerate_coding2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctaaagtgttgccctctgcccctcccacagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAACCATGGTGCCTATCCAGTTCTCCAGGAGACACTTCAgtgaggaataagactcaggctaagggtccaaatgtagttaggagacccag Alignment from GeneWise CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctaaagtgttgccctctgcccctcccacagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAACCATGGTGCCTATCCAGTTCTCCAGGAGACACTTCAgtgaggaataagactcaggctaagggtccaaatgtagttaggagacccag #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGAC-TCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagaGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACCTCAGCCAAGA-CTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTggtaggttcaagtctaggaatgtcagggggggatgggcaaccatgaattcc Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagaGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACCTCAGCCAAGACTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTggtaggttcaagtctaggaatgtcagggggggatggttcttttttttttta Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACCTCAGCCAAGACTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatgggcaaccatgaattcc Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACCTCAGCCAAGACTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatgggcaaccatgaattcc Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGA-CTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACCTCAGCCAAGA-CTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatgggcaaccatgaattcc Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACCTCAGCCAAGACTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatgggcaaccatgaattcc Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACCTCAGCCAAGACTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatgggcaaccatgaattcc Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACCTCAGCCAAGACTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGGTAGGTTCAAGTCTAGGAATGTCAGGGGGGGATGGGCAACCATGAATTCC #### Naaladl1_ID1448_7 --> 1 - 1 Original Alignment tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAAT-GTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg tactcaataattacactcaatttcaatccccttccttcttgtgctttaagtGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATCGTGCTCGGCA-CATCCAGGGGGCTGTGGAGCCTggtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from CESAR tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg tactcaataattacactcaatttcaatccccttccttcttgtgctttaagtGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATCGTGCTCGGCACATCCAGGGGGCTGTGGAGCCTggtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from Spaln_aa2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATCGTGCTCGGCACATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from Spaln_nt2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATCGTGCTCGGCACATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from Pairagon TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAAT-GTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATCGTGCTCGGCA-CATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from Exonerate_protein2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATCGTGCTCGGCACATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from Exonerate_coding2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATCGTGCTCGGCACATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from GeneWise TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATCGTGCTCGGCACATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt #### Naaladl1_ID1451_10 --> 0 - 1 Original Alignment GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATC-AATGTGGACATCTCTGTTTTCt aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCCAATGTCG-CATCTCTGTTTTTtgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from CESAR GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCCAATGTCGCATCTCTGTTTTTtgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Spaln_aa2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCCAATGTCGCATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Spaln_nt2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATC-AATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCCAATGTCG-CATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Pairagon GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACAT-CAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCCAATGTCG-CATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Exonerate_protein2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCCAATGTCGCATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Exonerate_coding2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCCAATGTCGCATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from GeneWise GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCCAATGTCGCATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCACAGGGAACACCT-CCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagccAATACTACTCTCCAGGCCCAGGGAGCACCACCCTGTACAAG-TGTGCTCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagccAATACTACTCTCCAGGCCCAGGGAGCACCACCCTGTACAAGTGTGCTCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCCTGTACAAGTGTGCTCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCCTGTACAAGTGTGCTCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from Pairagon CCAATGCTACCCTCCGGGCACAGGGAACACC-TCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCCTGTAC-AAGTGTGCTCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCCTGTACAAGTGTGCTCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCCTGTACAAGTGTGCTCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggatgggttagctgccaacagtgtgctcttttaatctcctcagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCCTGTACAAGTGTGCTCTTCTCTTCAACCAAAGATgtcagtaggtgatcttcaaaggagtaaggggggactatgccatctagggt #### Naaladl1_ID1457_16 --> 2 - 2 Original Alignment TGg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCA-TCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga TGggtgggtcacggagtccccaggcaggcagctctcatgtcaccctccagggCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCCTCATTGG-AGAGCACATCCTGACCCTAGGGAAGAGCAGCCCTgagtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from CESAR TGg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga TGggtaagtcacggagtccccaggcaggcagctctcatgtcaccctccagggCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCCTCATTGGAGAGCACATCCTGACCCTAGGGAAGAGCAGCCCTgagtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from Spaln_aa2Genome TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtgggtcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCCTCATTGGAGAGCACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from Spaln_nt2Genome TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtgggtcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCCTCATTGGAGAGCACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from Pairagon TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtgggtcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCCTCATTGGAGAGCACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from Exonerate_protein2genome TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtgggtcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCCTCATTGGAGAGCACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from Exonerate_coding2genome TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtgggtcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCCTCATTGGAGAGCACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac Alignment from GeneWise TGG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA TGGgtgggtcacggagtccccaggcaggcagctctcatgtcaccctccagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCCTCATTGGAGAGCACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtagccgccagcagagggcatgtgtcaccaggtatacatggagatggtac #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAA-CGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagtCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCTCTTAGAGCTGTGCATTTT-GAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACaggtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagtCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCTCTTAGAGCTGTGCATTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACaggtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCTCTTAGAGCTGTGCATTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCTCTTAGAGCTGTGCATTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAAC-GGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCTCTTAGAGCTGTGCATT-TTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCTCTTAGAGCTGTGCATTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCTCTTAGAGCTGTGCATTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCTCTTAGAGCTGTGCATTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc #### Ndufv1_ID274_8 --> 0 - 1 Original Alignment ACAGACATTGTGAAA-GCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAACGCCATTG-TCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAggtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from CESAR ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAACGCCATTGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAggtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from Spaln_aa2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAACGCCATTGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from Spaln_nt2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAACGCCATTGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from Pairagon ACAGACATTGTGAAA-GCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAACGCCATTG-TCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from Exonerate_protein2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAACGCCATTGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from Exonerate_coding2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAACGCCATTGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from GeneWise ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAACGCCATTGTCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGT-GAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaaggtGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCT---ACATTGATTCCCAAATCTGTGTGTCGAGACTGTGC-AATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaaggtGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCAAATCTGTGTGTCGAGACTGTGCAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCAAATCTGTGTGTCGAGACTGTGCAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCAT---CTACATTGATTCCCAAATCTGTGTGTCGAGACTGTGCAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGT-GAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTA---CATTGATTCCCAAATCTGTGTGTCGAGACTGTGC-AATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCAAATCTGTGTGTCGAGACTGTGCAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCAAATCTGTGTGTCGAGACTGTGCAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCAAATCTGTGTGTCGAGACTGTGCAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc #### Ndufv1_ID280_2 --> 0 - 2 Original Alignment ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTT-ACCAACCTGTATGGGCGCCATGACTGGag ccaacctcatggttgctaggtcttgatttgaatatttttgtatttctcagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGACGACCGCATTTTTCACCAATCTGT-TGGGCGCCATGACTGGaggtgagccaaagccatgacctcggcacagaactcctgactttgtctccctc Alignment from CESAR ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGag ccaacctcatggttgctaggtcttgatttgaatatttttgtatttctcagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGACGACCGCATTTTTCACCAATCTGTTGGGCGCCATGACTGGaggtgagccaaagccatgacctcggcacagaactactcactgtccttgccct Alignment from Spaln_aa2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtcttgatttgaatatttttgtatttctcagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGACGACCGCATTTTTCACCAATCTGTTGGGCGCCATGACTGGAGgtgagccaaagccatgacctcggcacagaactcctgactttgtctccctc Alignment from Spaln_nt2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtcttgatttgaatatttttgtatttctcagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGACGACCGCATTTTTCACCAATCTGTTGGGCGCCATGACTGGAGgtgagccaaagccatgacctcggcacagaactcctgactttgtctccctc Alignment from Pairagon ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTT-ACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtcttgatttgaatatttttgtatttctcagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGACGACCGCATTTTTCACCAATCTGT-TGGGCGCCATGACTGGAGgtgagccaaagccatgacctcggcacagaactcctgactttgtctccctc Alignment from Exonerate_protein2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtcttgatttgaatatttttgtatttctcagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGACGACCGCATTTTTCACCAATCTGTTGGGCGCCATGACTGGAGgtgagccaaagccatgacctcggcacagaactcctgactttgtctccctc Alignment from Exonerate_coding2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtcttgatttgaatatttttgtatttctcagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGACGACCGCATTTTTCACCAATCTGTTGGGCGCCATGACTGGAGgtgagccaaagccatgacctcggcacagaactcctgactttgtctccctc Alignment from GeneWise ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtcttgatttgaatatttttgtatttctcagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGACGACCGCATTTTTCACCAATCTGTTGGGCGCCATGACTGGAGgtgagccaaagccatgacctcggcacagaactcctgactttgtctccctc #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATC-CAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagaTTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACCAGA-ACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTggtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagaTTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACCAGAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTggtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACCAGAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACCAGAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACCAGAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACCAGAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACCAGAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACCAGAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTG-CGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCCGCTTCT-TGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCagtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCCGCTTCTTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCagtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCCGCTTCTTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCCGCTTCTTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTG-CGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCCGCTTCTT-GCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCCGCTTCTTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCCGCTTCTTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGAGCATTGTACGGCTGCCGCTTCTTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTC-CTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAg tatagacatacattgctggcgctaaatcgtttgttctctttgctcctcagTATGCCATTGTGTTCCAGACTCCACCTTATCACAAGATGAAGATTGAAAGGCCCGTGACAGTGTTCCCTTCAGCTGA-GCGTAAACGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTATTACCCTTTGGTAGAGggtgagtcagggttcagcatttctaaaagctagatggactcaagcctgtga Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATAT---TACCCTCTGGTGGAAg tatagacatacattgctggcgctaaatcgtttgttctctttgctcctcagTATGCCATTGTGTTCCAGACTCCACCTTATCACAAGATGAAGATTGAAAGGCCCGTGACAGTGTTCCCTTCAGCTGAGCGTAAACGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTATTACCCTTTGGTAGAGggtgagtcagggttcagcatttctaaaagctagatggactcaagcctgtga Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG tatagacatacattgctggcgctaaatcgtttgttctctttgctcctcagTATGCCATTGTGTTCCAGACTCCACCTTATCACAAGATGAAGATTGAAAGGCCCGTGACAGTGTTCCCTTCAGCTGAGCGTAAACGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTATTACCCTTTGGTAGAGGgtgagtcagggttcagcatttctaaaagctagatggactcaagcctgtga Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTA---CCCTCTGGTGGAAG tatagacatacattgctggcgctaaatcgtttgttctctttgctcctcagTATGCCATTGTGTTCCAGACTCCACCTTATCACAAGATGAAGATTGAAAGGCCCGTGACAGTGTTCCCTTCAGCTGAGCGTAAACGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTATTACCCTTTGGTAGAGGgtgagtcagggttcagcatttctaaaagctagatggactcaagcctgtga Alignment from Pairagon TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTT-CCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG tatagacatacattgctggcgctaaatcgtttgttctctttgctcctcagTATGCCATTGTGTTCCAGACTCCACCTTATCACAAGATGAAGATTGAAAGGCCCGTGACAGTGTTCCCTTCAGCTG-AGCGTAAACGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTATTACCCTTTGGTAGAGGgtgagtcagggttcagcatttctaaaagctagatggactcaagcctgtga Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG tatagacatacattgctggcgctaaatcgtttgttctctttgctcctcagTATGCCATTGTGTTCCAGACTCCACCTTATCACAAGATGAAGATTGAAAGGCCCGTGACAGTGTTCCCTTCAGCTGAGCGTAAACGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTATTACCCTTTGGTAGAGGgtgagtcagggttcagcatttctaaaagctagatggactcaagcctgtga Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG tatagacatacattgctggcgctaaatcgtttgttctctttgctcctcagTATGCCATTGTGTTCCAGACTCCACCTTATCACAAGATGAAGATTGAAAGGCCCGTGACAGTGTTCCCTTCAGCTGAGCGTAAACGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTATTACCCTTTGGTAGAGGgtgagtcagggttcagcatttctaaaagctagatggactcaagcctgtga Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAG tatagacatacattgctggcgctaaatcgtttgttctctttgctcctcagTATGCCATTGTGTTCCAGACTCCACCTTATCACAAGATGAAGATTGAAAGGCCCGTGACAGTGTTCCCTTCAGCTGAGCGTAAACGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTATTACCCTTTGGTAGAGGgtgagtcagggttcagcatttctaaaagctagatggactcaagcctgtga #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTC-ATCAACCTCACCAACCACCTGCACCAG ggggttataaggaacaagtgaagaacaacagataccatcttcttccacagcCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGCGTACATAAACCTCA-CAACCACCTGCATCAGgtaagaagaagttagagattgaaagcaagaagtctaaagctggccgacac Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttataaggaacaagtgaagaacaacagataccatcttcttccacagcCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGCGTACATAAACCTCACAACCACCTGCATCAGgtaagaagaagttagagattgaaagcaagaagtctaaagctggccttttg Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttataaggaacaagtgaagaacaacagataccatcttcttccacagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGCGTACATAAACCTCACAACCACCTGCATCAGgtaagaagaagttagagattgaaagcaagaagtctaaagctggccgacac Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGT-CATCAACCTCACCAACCACCTGCACCAG ggggttataaggaacaagtgaagaacaacagataccatcttcttccacagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGCGTACATAAACCTCA-CAACCACCTGCATCAGgtaagaagaagttagagattgaaagcaagaagtctaaagctggccgacac Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGT-CATCAACCTCACCAACCACCTGCACCAG ggggttataaggaacaagtgaagaacaacagataccatcttcttccacagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGCGTACATAAACCTCA-CAACCACCTGCATCAGgtaagaagaagttagagattgaaagcaagaagtctaaagctggccgacac Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttataaggaacaagtgaagaacaacagataccatcttcttccacagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGCGTACATAAACCTCACAACCACCTGCATCAGgtaagaagaagttagagattgaaagcaagaagtctaaagctggccgacac Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttataaggaacaagtgaagaacaacagataccatcttcttccacagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGCGTACATAAACCTCACAACCACCTGCATCAGgtaagaagaagttagagattgaaagcaagaagtctaaagctggccgacac Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ggggttataaggaacaagtgaagaacaacagataccatcttcttccacagCCCACTGCACTTAGCCATTATCCATGGGCAGACAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGCGTACATAAACCTCACAACCACCTGCATCAGgtaagaagaagttagagattgaaagcaagaagtctaaagctggccgacac #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCC-CTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCCTGC-TCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCCTGCTCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCCTGCTCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCCTGCTCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCCTGCTCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCCTGCTCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCCTGCTCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaggagagcccctgccttacgcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGTCTGGACCTCTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAACTGCCCCTGCTCTAGCGACAGAGATGGAAGAGTTGGGGCTGGTCGCCCATTTAGTCACCAAGgtaagtattcaactgtgcggactatggacaggataagataatagagactg #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCT-CTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcaggtGCTGATATCCACACAGAGAATGAAGAACCTCCTGTGTCCAC-GCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcaggtGCTGATATCCACACAGAGAATGAAGAACCTCCTGTGTCCACGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCCTGTGTCCACGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTC-TGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCCTGTGTCCAC-GCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCT-CTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCCTGTGTCCAC-GCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCCTGTGTCCACGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCCTGTGTCCACGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCCTGTGTCCACGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt #### Nfkb2_ID9843_21 --> 0 - 1 Original Alignment CTGGCTGGTGGGGAC-TTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg gctagacactatgccgaagcctcaatcccctacaaatgtggcgtcagcagTTAGCTGGTGGGGACCTTGG-GGGCCTGTTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCAAGTACAggtgggcacaggcaccccagagggcatgtctaagcttagaggagacggtaa Alignment from CESAR CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg gctagacactatgccgaagcctcaatcccctacaaatgtggcgtcagcagTTAGCTGGTGGGGACCTTGGGGGCCTGTTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCAAGTACAggtgggcacaggcaccccagagggcatgtctaagcttagaggagacggtaa Alignment from Spaln_aa2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gctagacactatgccgaagcctcaatcccctacaaatgtggcgtcagcagTTAGCTGGTGGGGACCTTGGGGGCCTGTTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCAAGTACAGgtgggcacaggcaccccagagggcatgtctaagcttagaggagacggtaa Alignment from Spaln_nt2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gctagacactatgccgaagcctcaatcccctacaaatgtggcgtcagcagTTAGCTGGTGGGGACCTTGGGGGCCTGTTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCAAGTACAGgtgggcacaggcaccccagagggcatgtctaagcttagaggagacggtaa Alignment from Pairagon CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gctagacactatgccgaagcctcaatcccctacaaatgtggcgtcagcagTTAGCTGGTGGGGACCTTGGGGGCCTGTTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCAAGTACAGgtgggcacaggcaccccagagggcatgtctaagcttagaggagacggtaa Alignment from Exonerate_protein2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gctagacactatgccgaagcctcaatcccctacaaatgtggcgtcagcagTTAGCTGGTGGGGACCTTGGGGGCCTGTTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCAAGTACAGgtgggcacaggcaccccagagggcatgtctaagcttagaggagacggtaa Alignment from Exonerate_coding2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gctagacactatgccgaagcctcaatcccctacaaatgtggcgtcagcagTTAGCTGGTGGGGACCTTGGGGGCCTGTTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCAAGTACAGgtgggcacaggcaccccagagggcatgtctaagcttagaggagacggtaa Alignment from GeneWise CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gctagacactatgccgaagcctcaatcccctacaaatgtggcgtcagcagTTAGCTGGTGGGGACCTTGGGGGCCTGTTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTGCCAAGTACAGgtgggcacaggcaccccagagggcatgtctaagcttagaggagacggtaa #### Nmrk1_ID4439_5 --> 1 - 2 Original Alignment gCCTCTGGACACCATATGGAACAGA-AGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag agaagatgggaagaacattgtcttgggcactgttattattttatctttaggCTTCTGGATACCATATGGAATAGACAGTT-CTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGaggtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from CESAR gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag agaagatgggaagaacattgtcttgggcactgttattattttatctttaggCTTCTGGATACCATATGGAATAGACAGTTCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGaggtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from Spaln_aa2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGACAGTTCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from Spaln_nt2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGACAGTTCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from Pairagon GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGACAGTTCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from Exonerate_protein2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGACAGTTCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from Exonerate_coding2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGACAGTTCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from GeneWise GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGACAGTTCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACA-CTGTTCACATTACATGCAg ttggtctccctttcacttaactaaatttagggatttgcttccttccttaggaGATGTTTTGAATATTGACCCCATGAAATTTTATACCCCTCTCTTCCAGACACCTGT-TACGTTACATGCAggtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from CESAR gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcacttaactaaatttagggatttgcttccttccttaggaGATGTTTTGAATATTGACCCCATGAAATTTTATACCCCTCTCTTCCAGACACCTGTTACGTTACATGCAggtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCATGAAATTTTATACCCCTCTCTTCCAGACACCTGTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCATGAAATTTTATACCCCTCTCTTCCAGACACCTGTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Pairagon GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCATGAAATTTTATACCCCTCTCTTCCAGACACCTGTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCATGAAATTTTATACCCCTCTCTTCCAGACACCTGTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCATGAAATTTTATACCCCTCTCTTCCAGACACCTGTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from GeneWise GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCATGAAATTTTATACCCCTCTCTTCCAGACACCTGTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGT-CTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCCTCCATT-TGTTCAAACTGCTTTTCATATTCTTTCTGGACCAggtgagttagtccatttggtctccctttcacttaactaaatttatcaatgt Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCCTCCATTTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAggtgagttagtccatttggtctccctttcacttaactaaatttagggattt Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCCTCCATTTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttatcaatgt Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCCTCCATTTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttatcaatgt Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCCTCCATTTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttatcaatgt Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCCTCCATTTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttatcaatgt Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCCTCCATTTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttatcaatgt Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCCTCCATTTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttatcaatgt #### Npas4_ID777_4 --> 2 - 2 Original Alignment atCGCCTTTTCCGTTGTCGA-TTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagacCACCTTTTTCATTGTCGACTTCAATG-CTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAaggtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from CESAR atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagacCACCTTTTTCATTGTCGACTTCAATGCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAaggtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from Spaln_aa2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGACTTCAATGCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from Spaln_nt2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGACTTCAATGCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from Pairagon ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGACTTCAATGCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from Exonerate_protein2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGACTTCAATGCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from Exonerate_coding2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGACTTCAATGCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc Alignment from GeneWise ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ccggtcttcaatccccactgccttaattgagtcatgtctgttgtttttagACCACCTTTTTCATTGTCGACTTCAATGCTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAATTCCATGCCCACCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTTCACTGCTTTCTGTGCACCCCCAAAGCCAAGACCCCGCCCAGGACCTGGTCCTGGTCCTGGCTCTGGTCCTGCTTCTCTTTTCCTGGCCATGTTTCAGAGTCGGCATGCTAAGGACCTAGCCCTACTGGATGTTTCTGAAAGgtaagtcctaagcaggaggcaggaaagaagggcacactagatttacaatc #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTC-CGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCTCCAACTCCAACCACCAGTCTCCTTTCCGATTGA-GTCAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTggtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from CESAR CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCTCCAACTCCAACCACCAGTCTCCTTTCCGATTGAGTCAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTggtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCTCCAACTCCAACCACCAGTCTCCTTTCCGATTGAGTCAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from Spaln_nt2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCTCCAACTCCAACCACCAGTCTCCTTTCCGATTGAGTCAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from Pairagon CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCTCCAACTCCAACCACCAGTCTCCTTTCCGATTGAGTCAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCTCCAACTCCAACCACCAGTCTCCTTTCCGATTGAGTCAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCTCCAACTCCAACCACCAGTCTCCTTTCCGATTGAGTCAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagtgtgcaagccaacagtactcgtctcactcacagtgcttcccagCTTAGCGTGGATGATCTCCAACTCCAACCACCAGTCTCCTTTCCGATTGAGTCAGGTTCAGGCCCAGTTCGAATC---------CATCAGATTGgtataaggggagaatgtctcagatcctggtgtggcctgcattccagactg #### Npm3_ID9577_3 --> 0 - 0 Original Alignment CTGTGCCTTACC-GAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTCGAGGCAG-CACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from CESAR CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTCGAGGCAGCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from Spaln_aa2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTCGAGGCAGCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from Spaln_nt2Genome CTGTGCCTTAC-CGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTCGAGGCAG-CACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from Pairagon CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTCGAGGCAGCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from Exonerate_protein2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTCGAGGCAGCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from Exonerate_coding2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTCGAGGCAGCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from GeneWise CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTCGAGGCAGCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTGAAAATTGGCACCTACACG-GGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCTACACACGGCCCCCTGC-GCAT---GTTGTCTATTCAGGGggtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from CESAR AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCTACACACGGCCCCCTGCGCAT---GTTGTCTATTCAGGGggtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Spaln_aa2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCTACACACGGCCCCCTGCGCAT---GTTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Spaln_nt2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACG-GGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCTACACACGGCCCCCTGC-GCATG---TTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Pairagon AAAACTGGAAAACTGAAAATTGGCACCTACACG-GGCCCCCTGCAGCACGGCA--TTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCTACACACGGCCCCCTGC------GCATGTTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Exonerate_protein2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCTACACACGGCCCCCTGCGCAT---GTTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Exonerate_coding2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCTACACACGGCCCCCTGCGCAT---GTTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from GeneWise AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCTACACACGGCCCCCTGCGCAT---GTTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACCATAGTC-CCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTAGTCCCCTGTCCTTG-CAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from CESAR GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTAGTCCCCTGTCCTTGCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from Spaln_aa2Genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTAGTCCCCTGTCCTTGCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from Spaln_nt2Genome GAAAAGGCAACCATAGTCCCA-GTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTAGTCCCCTGTCCTTG-CAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from Pairagon GAAAAGGCAACCATAGTCCCA-GTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTAGTCCCCTGTCCTTG-CAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from Exonerate_protein2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTAGTCCCCTGTCCTTGCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from Exonerate_coding2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTAGTCCCCTGTCCTTGCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc Alignment from GeneWise GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgccaaaggacacctggacctctgagggctctgttctgtttcagGAAAAGGCAATCTTAGTCCCCTGTCCTTGCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtgtggggtgaactttgaagataggtagccctaacagtggatgcatggcc #### Nxf1_ID2343_3 --> 1 - 0 Original Alignment cAATCCCTATACCAACCGGCCTAATCGTCGGGGA-GATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctccgacctaatgcatgtggagatggattttttctccttaaattgctagcAATCCGTATATGAACTGGCCTAATCGTCGGGGACGATGGTTGGC-TGATCGGGATCAAATCCATATTACAGTACGGAGAGATAGAGCTCCT---------GGAGGGGTCGGCACAAGTCAAGATGGGACTACCAAGAATTGGTTTAAGATAACAgtaagtactaaggagagcaagagatacagaaaatctgtcttgactcagta Alignment from CESAR cAATCCCTATACCAACCGGCCTAATCGTCGGGGA-GATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctccgacctaatgcatgtggagatggattttttctccttaaattgctagcAATCCGTATATGAACTGGCCTAATCGTCGGGGACGATGGTTGG-CTGATCGGGATCAAATCCATATTACAGTACGGAGAGATAGAGCTCCT---------GGAGGGGTCGGCACAAGTCAAGATGGGACTACCAAGAATTGGTTTAAGATAACAgtaagtactaaggagagcaagagatacagaaaatctgtcttgactcagta Alignment from Spaln_aa2Genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctccgacctaatgcatgtggagatggattttttctccttaaattgctagCAATCCGTATATGAACTGGCCTAATCGTCGGGGACGATGGTTGGCTGATCGGGATCAAATCCATATTACAGTACGGAGAGATAGAGCTCCT---------GGAGGGGTCGGCACAAGTCAAGATGGGACTACCAAGAATTGGTTTAAGATAACAgtaagtactaaggagagcaagagatacagaaaatctgtcttgactcagta Alignment from Spaln_nt2Genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctccgacctaatgcatgtggagatggattttttctccttaaattgctagCAATCCGTATATGAACTGGCCTAATCGTCGGGGACGATGGTTGGCTGATCGGGATCAAATCCATATTACAGTACGGAGAGATAGAGCTCCTGG---------AGGGGTCGGCACAAGTCAAGATGGGACTACCAAGAATTGGTTTAAGATAACAgtaagtactaaggagagcaagagatacagaaaatctgtcttgactcagta Alignment from Pairagon CAATCCCTATACCAACCGGCCTAATCGTCGGGGA-GATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctccgacctaatgcatgtggagatggattttttctccttaaattgctagCAATCCGTATATGAACTGGCCTAATCGTCGGGGACGATGGTTGGC-TGATCGGGATCAAATCCATATTACAGTACGGAGAGATAGAGCTCCT---------GGAGGGGTCGGCACAAGTCAAGATGGGACTACCAAGAATTGGTTTAAGATAACAgtaagtactaaggagagcaagagatacagaaaatctgtcttgactcagta Alignment from Exonerate_protein2genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctccgacctaatgcatgtggagatggattttttctccttaaattgctagCAATCCGTATATGAACTGGCCTAATCGTCGGGGACGATGGTTGGCTGATCGGGATCAAATCCATATTACAGTACGGAGAGATAGAGCTCCT---------GGAGGGGTCGGCACAAGTCAAGATGGGACTACCAAGAATTGGTTTAAGATAACAgtaagtactaaggagagcaagagatacagaaaatctgtcttgactcagta Alignment from Exonerate_coding2genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctccgacctaatgcatgtggagatggattttttctccttaaattgctagCAATCCGTATATGAACTGGCCTAATCGTCGGGGACGATGGTTGGCTGATCGGGATCAAATCCATATTACAGTACGGAGAGATAGAGCTCCT---------GGAGGGGTCGGCACAAGTCAAGATGGGACTACCAAGAATTGGTTTAAGATAACAgtaagtactaaggagagcaagagatacagaaaatctgtcttgactcagta Alignment from GeneWise CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctccgacctaatgcatgtggagatggattttttctccttaaattgctagCAATCCGTATATGAACTGGCCTAATCGTCGGGGACGATGGTTGGCTGATCGGGATCAAATCCATATTACAGTACGGAGAGATAGAGCTCCT---------GGAGGGGTCGGCACAAGTCAAGATGGGACTACCAAGAATTGGTTTAAGATAACAgtaagtactaaggagagcaagagatacagaaaatctgtcttgactcagta #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGAT-GTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagatTTGGTGGCTCAGAACATTGTTCGTTGTTC-AAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagatTTGGTGGCTCAGAACATTGTTCGTTGTTCAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTCGTTGTTCAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTCGTTGTTCAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Pairagon ATTTGGTGGCCCAGAACATCGAT-GTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTCGTTGTTC-AAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTCGTTGTTCAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTCGTTGTTCAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTCGTTGTTCAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt #### Nxf1_ID2352_12 --> 0 - 0 Original Alignment GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCT-ACAATGTTACCACCCTGCAAG aaatccagttcttattcagtttcttataccgtatctgttctttcttgaagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTCACAA-GTTACCACCCTGCAAGgtgagttgttgggtttgcattagaactctgatagaagagaacactggtcc Alignment from CESAR GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagttcttattcagtttcttataccgtatctgttctttcttgaagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTCACAAGTTACCACCCTGCAAGgtgagttgttgggtttgcattagaactctgatagaagagaacactggtcc Alignment from Spaln_aa2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagttcttattcagtttcttataccgtatctgttctttcttgaagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTCACAAGTTACCACCCTGCAAGgtgagttgttgggtttgcattagaactctgatagaagagaacactggtcc Alignment from Spaln_nt2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagttcttattcagtttcttataccgtatctgttctttcttgaagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTCACAAGTTACCACCCTGCAAGgtgagttgttgggtttgcattagaactctgatagaagagaacactggtcc Alignment from Pairagon GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagttcttattcagtttcttataccgtatctgttctttcttgaagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTCACAAGTTACCACCCTGCAAGgtgagttgttgggtttgcattagaactctgatagaagagaacactggtcc Alignment from Exonerate_protein2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagttcttattcagtttcttataccgtatctgttctttcttgaagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTCACAAGTTACCACCCTGCAAGgtgagttgttgggtttgcattagaactctgatagaagagaacactggtcc Alignment from Exonerate_coding2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagttcttattcagtttcttataccgtatctgttctttcttgaagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTCACAAGTTACCACCCTGCAAGgtgagttgttgggtttgcattagaactctgatagaagagaacactggtcc Alignment from GeneWise GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagttcttattcagtttcttataccgtatctgttctttcttgaagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTCACAAGTTACCACCCTGCAAGgtgagttgttgggtttgcattagaactctgatagaagagaacactggtcc #### Nxf1_ID2353_13 --> 0 - 2 Original Alignment GGAAGCTATTTT-GGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAA-CGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGcagtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from CESAR GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGcagtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from Spaln_aa2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from Spaln_nt2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from Pairagon GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from Exonerate_protein2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from Exonerate_coding2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from GeneWise GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aacaactggactatgcatatttagtggttgaccactgtctgtcttcacaggTACTATGTCATTTGTGACTCAGGACGACCGTCAGG-TCTTCAGTATGCCTACCATGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCaggtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from CESAR gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aacaactggactatgcatatttagtggttgaccactgtctgtcttcacaggTACTATGTCATTTGTGACTCAGGACGACCGTCAGGTCTTCAGTATGCCTACCATGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCaggtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from Spaln_aa2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGACGACCGTCAGGTCTTCAGTATGCCTACCATGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from Spaln_nt2Genome GTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGACGACCGTCA-GGTCTTCAGTATGCCTACCATGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from Pairagon GTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGACGACCGTCA-GGTCTTCAGTATGCCTACCATGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from Exonerate_protein2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGACGACCGTCAGGTCTTCAGTATGCCTACCATGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from Exonerate_coding2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGACGACCGTCAGGTCTTCAGTATGCCTACCATGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc Alignment from GeneWise GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aacaactggactatgcatatttagtggttgaccactgtctgtcttcacagGTACTATGTCATTTGTGACTCAGGACGACCGTCAGGTCTTCAGTATGCCTACCATGATGGCGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtaagcgtatatgtttgactctatctggaacctgtacaacccccagaatc #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTG-TGTTTTTCTGTCAATGGAGTCTTCAAGGAAg acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGCTGTC-ATCTCTAAATGAAGTCCTCAAGGAAtgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from CESAR AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAg acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGCTGTCATCTCTAAATGAAGTCCTCAAGGAAtgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Spaln_aa2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGCTGTCATCTCTAAATGAAGTCCTCAAGGAATgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGCTGTCATCTCTAAATGAAGTCCTCAAGGAATgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Pairagon AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGCTGTCATCTCTAAATGAAGTCCTCAAGGAATgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Exonerate_protein2genome acacaagtaattctaagcctccctagcttatcaataattttttttaatagagtacattactgctgtcatctctaaatgaagtcctcaaggaatgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Exonerate_coding2genome acacaagtaattctaagcctccctagcttatcaataattttttttaatagagtacattactgctgtcatctctaaatgaagtcctcaaggaatgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from GeneWise acacaagtaattctaagcctccctagcttatcaataattttttttaatagagtacattactgctgtcatctctaaatgaagtcctcaaggaatgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAAT-GAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagatCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATCGAGTTTT-TGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACaagtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagatCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATCGAGTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACaagtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATCGAGTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATCGAGTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATCGAGTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATCGAGTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATCGAGTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATCGAGTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTAC-CTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCCTCGTGG-CTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCCTCGTGGCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCCTCGTGGCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCCTCGTGGCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCCTCGTGGCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCCTCGTGGCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCCTCGTGGCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCCTCGTGGCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt #### Otub1_ID2061_5 --> 1 - 0 Original Alignment gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTC-ACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaaggTTTAAAGCAGTGTCAGCCAAGAGTAAAGAAGACCTGGTGTCCCAGGGCATCCACTG-GTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from CESAR gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaaggTTTAAAGCAGTGTCAGCCAAGAGTAAAGAAGACCTGGTGTCCCAGGGCATCCACTGGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from Spaln_aa2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAAGACCTGGTGTCCCAGGGCATCCACTGGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from Spaln_nt2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAAGACCTGGTGTCCCAGGGCATCCACTGGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from Pairagon GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGC-TTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAAGACCTGGTGTCCCAGGGCATCCACTG-GTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from Exonerate_protein2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAAGACCTGGTGTCCCAGGGCATCCACTGGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from Exonerate_coding2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAAGACCTGGTGTCCCAGGGCATCCACTGGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from GeneWise GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAAGACCTGGTGTCCCAGGGCATCCACTGGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAG-CTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagagCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCCTTCCCGTCG-TGAAGCCATGTTGACCTGCAGGCATAAGttgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagagCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCCTTCCCGTCGTGAAGCCATGTTGACCTGCAGGCATAAGttgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCCTTCCCGTCGTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCCTTCCCGTCGTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGC---------TGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGC---------CTTCCCGTCGTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCCTTCCCGTCGTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCCTTCCCGTCGTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCCTTCCCGTCGTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCT-GCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTCGCATGGAGAG-TCTATTCAGCCAGTCGGAGCCCCTAGTGTCAggtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTCGCATGGAGAGTCTATTCAGCCAGTCGGAGCCCCTAGTGTCAggtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTCGCATGGAGAGTCTATTCAGCCAGTCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCT-GCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTCGCATGGAGAG-TCTATTCAGCCAGTCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCT-GCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTCGCATGGAGAG-TCTATTCAGCCAGTCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTCGCATGGAGAGTCTATTCAGCCAGTCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTCGCATGGAGAGTCTATTCAGCCAGTCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTCGCATGGAGAGTCTATTCAGCCAGTCGGAGCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc #### Pacs1_ID885_9 --> 0 - 2 Original Alignment GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGAC-AGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACCAGTCTTG-GATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from CESAR GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACCAGTCTTGGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from Spaln_aa2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACCAGTCTTGGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from Spaln_nt2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACCAGTCTTGGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from Pairagon GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGA-CAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACCAGTCTTG-GATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from Exonerate_protein2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACCAGTCTTGGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from Exonerate_coding2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACCAGTCTTGGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from GeneWise GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACCAGTCTTGGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGT-GACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagatCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTCGATG-TCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from CESAR atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagatCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTCGATGTCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTCGATGTCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTCGATGTCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Pairagon ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTCGATGTCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTCGATGTCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Exonerate_coding2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTCGATGTCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTCGATGTCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTG-CTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACCTGGTGCTCC-CCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACCTGGTGCTCCCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACCTGGTGCTCCCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACCTGGTGCTCCCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Pairagon GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTG-CTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACCTGGTGCT-CCCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACCTGGTGCTCCCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACCTGGTGCTCCCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACCTGGTGCTCCCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTG-CTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGCTTGGGTC-CCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGCTTGGGTCCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGCTTGGGTCCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGCTTGGGTCCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGCTTGGGTCCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGCTTGGGTCCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGCTTGGGTCCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGCTTGGGTCCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTT-CGTGGCCTTGAGTTCCGGg gaaggcaatgtttctacttgacatccacctccattgcctttgctttgcaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGACTGCTTTGTCCTGGCCCCTGACTACCTCAATGGACTTGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCCATG-CCTCAAGTTCCGGggtaaatcagcctgagatggtacactagttgggggcagagcatatacgtat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gaaggcaatgtttctacttgacatccacctccattgcctttgctttgcaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGACTGCTTTGTCCTGGCCCCTGACTACCTCAATGGACTTGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCCATGCCTCAAGTTCCGGggtaaatcagcctgagatggtacactagttgggggcagagcatatacgtat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggcaatgtttctacttgacatccacctccattgcctttgctttgcagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGACTGCTTTGTCCTGGCCCCTGACTACCTCAATGGACTTGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCCATGCCTCAAGTTCCGGGgtaaatcagcctgagatggtacactagttgggggcagagcatatacgtat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggcaatgtttctacttgacatccacctccattgcctttgctttgcagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGACTGCTTTGTCCTGGCCCCTGACTACCTCAATGGACTTGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCCATGCCTCAAGTTCCGGGgtaaatcagcctgagatggtacactagttgggggcagagcatatacgtat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggcaatgtttctacttgacatccacctccattgcctttgctttgcagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGACTGCTTTGTCCTGGCCCCTGACTACCTCAATGGACTTGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCCATGCCTCAAGTTCCGGGgtaaatcagcctgagatggtacactagttgggggcagagcatatacgtat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggcaatgtttctacttgacatccacctccattgcctttgctttgcagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGACTGCTTTGTCCTGGCCCCTGACTACCTCAATGGACTTGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCCATGCCTCAAGTTCCGGGgtaaatcagcctgagatggtacactagttgggggcagagcatatacgtat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggcaatgtttctacttgacatccacctccattgcctttgctttgcagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGACTGCTTTGTCCTGGCCCCTGACTACCTCAATGGACTTGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCCATGCCTCAAGTTCCGGGgtaaatcagcctgagatggtacactagttgggggcagagcatatacgtat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gaaggcaatgtttctacttgacatccacctccattgcctttgctttgcagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGACTGCTTTGTCCTGGCCCCTGACTACCTCAATGGACTTGTCCACCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCCATGCCTCAAGTTCCGGGgtaaatcagcctgagatggtacactagttgggggcagagcatatacgtat #### Pcnxl3_ID1175_18 --> 1 - 0 Original Alignment gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCA-GACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacaggTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCACGACCCAC-GCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from CESAR gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacaggTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCACGACCCACGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Spaln_aa2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCACGACCCACGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Spaln_nt2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCACGACCCACGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Pairagon GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCA-GACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCACGACCCAC-GCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Exonerate_protein2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCACGACCCACGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Exonerate_coding2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCACGACCCACGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from GeneWise GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCACGACCCACGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGAC-ATGCATGGCTTTGGAGGCACAg agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagtaTTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATCATGCATG-TTTTGGAGGCACAggtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagtaTTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATCATGCATGTTTTGGAGGCACAggtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATCATGCATGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGA-CATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATCATGCAT-GTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGA-CATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATCATGCAT-GTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATCATGCATGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATCATGCATGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATCATGCATGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTA-CTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCCTCA-CTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTggtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCCTCACTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTggtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCCTCACTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCCTCACTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCCTCACTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCCTCACTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCCTCACTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCCTCACTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCTGAT-GCAGCATCCCCAATGCAC atgggccctaatactatacactaccaacctttcccattcattacttttagAGTGTGCAACCTGATCGCAG-ATCGCCCATGCACgtgagtatgtgaaggaaactttgggcaatgggcactgggagggtctaaga Alignment from CESAR AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggccctaatactatacactaccaacctttcccattcattacttttagAGTGTGCAACCTGATCGCAGATCGCCCATGCACgtgagtatgtgaaggaaactttgggcaatgggcactgggagggtctaaga Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggccctaatactatacactaccaacctttcccattcattacttttagAGTGTGCAACCTGATCGCAGATCGCCCATGCACgtgagtatgtgaaggaaactttgggcaatgggcactgggagggtctaaga Alignment from Spaln_nt2Genome AGCGTGCAGCCTGAT-GCAGCATCCCCAATGCAC atgggccctaatactatacactaccaacctttcccattcattacttttagAGTGTGCAACCTGATCGCAG-ATCGCCCATGCACgtgagtatgtgaaggaaactttgggcaatgggcactgggagggtctaaga Alignment from Pairagon AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggccctaatactatacactaccaacctttcccattcattacttttagAGTGTGCAACCTGATCGCAGATCGCCCATGCACgtgagtatgtgaaggaaactttgggcaatgggcactgggagggtctaaga Alignment from Exonerate_protein2genome atgggccctaatactatacactaccaacctttcccattcattacttttagagtgtgcaacctgatcgcagatcgcccatgcacgtgagtatgtgaaggaaactttgggcaatgggcactgggagggtctaaga Alignment from Exonerate_coding2genome atgggccctaatactatacactaccaacctttcccattcattacttttagagtgtgcaacctgatcgcagatcgcccatgcacgtgagtatgtgaaggaaactttgggcaatgggcactgggagggtctaaga Alignment from GeneWise AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggccctaatactatacactaccaacctttcccattcattacttttagAGTGTGCAACCTGATCGCAGATCGCCCATGCACgtgagtatgtgaaggaaactttgggcaatgggcactgggagggtctaaga #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATT-GGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTCGGCCGTGGCC-GGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTCGGCCGTGGCCGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTCGGCCGTGGCCGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATT-GGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTCGGCCGTGGCC-GGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATT-GGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTCGGCCGTGGCC-GGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTCGGCCGTGGCCGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTCGGCCGTGGCCGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAGGGTTATCTTCTTCGGCCGTGGCCGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCA-GGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg tacagtgtgtctctcttgatcataattcacttgtatttttcctgtcccagGGCATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCCGACCTCCCTCTACACATCCATACCCATGATACTTCACGGGGCAGGTG-GGCAGCCACACTGGCTTGTGCACAAGCAGGGGCTGATGTTGTAGAAGTGGTTGCAGTAGACGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAggtgagccaaaagaatgacttaacagctgaatgactagaggtagcactgca Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg tacagtgtgtctctcttgatcataattcacttgtatttttcctgtcccagGGCATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCCGACCTCCCTCTACACATCCATACCCATGATACTTCACGGGGCAGGTGGGCAGCCACACTGGCTTGTGCACAAGCAGGGGCTGATGTTGTAGAAGTGGTTGCAGTAGACGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAggtgagccaaaagaatgacttaacagctgaatgactagaggtagcactgca Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tacagtgtgtctctcttgatcataattcacttgtatttttcctgtcccagGGCATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCCGACCTCCCTCTACACATCCATACCCATGATACTTCACGGGGCAGGTGGGCAGCCACACTGGCTTGTGCACAAGCAGGGGCTGATGTTGTAGAAGTGGTTGCAGTAGACGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtgagccaaaagaatgacttaacagctgaatgactagaggtagcactgca Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tacagtgtgtctctcttgatcataattcacttgtatttttcctgtcccagGGCATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCCGACCTCCCTCTACACATCCATACCCATGATACTTCACGGGGCAGGTGGGCAGCCACACTGGCTTGTGCACAAGCAGGGGCTGATGTTGTAGAAGTGGTTGCAGTAGACGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtgagccaaaagaatgacttaacagctgaatgactagaggtagcactgca Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCA-GGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tacagtgtgtctctcttgatcataattcacttgtatttttcctgtcccagGGCATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCCGACCTCCCTCTACACATCCATACCCATGATACTTCACGGGGCAGGTG-GGCAGCCACACTGGCTTGTGCACAAGCAGGGGCTGATGTTGTAGAAGTGGTTGCAGTAGACGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtgagccaaaagaatgacttaacagctgaatgactagaggtagcactgca Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tacagtgtgtctctcttgatcataattcacttgtatttttcctgtcccagGGCATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCCGACCTCCCTCTACACATCCATACCCATGATACTTCACGGGGCAGGTGGGCAGCCACACTGGCTTGTGCACAAGCAGGGGCTGATGTTGTAGAAGTGGTTGCAGTAGACGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtgagccaaaagaatgacttaacagctgaatgactagaggtagcactgca Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tacagtgtgtctctcttgatcataattcacttgtatttttcctgtcccagGGCATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCCGACCTCCCTCTACACATCCATACCCATGATACTTCACGGGGCAGGTGGGCAGCCACACTGGCTTGTGCACAAGCAGGGGCTGATGTTGTAGAAGTGGTTGCAGTAGACGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtgagccaaaagaatgacttaacagctgaatgactagaggtagcactgca Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tacagtgtgtctctcttgatcataattcacttgtatttttcctgtcccagGGCATAGCAGGCCTGCTGAAGCCCGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGGTCCCCCGACCTCCCTCTACACATCCATACCCATGATACTTCACGGGGCAGGTGGGCAGCCACACTGGCTTGTGCACAAGCAGGGGCTGATGTTGTAGAAGTGGTTGCAGTAGACGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtgagccaaaagaatgacttaacagctgaatgactagaggtagcactgca #### Pcx_ID567_16 --> 2 - 0 Original Alignment agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAAC-CTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgaatacaaccaacttcaactggagtatctgttattttagcaGTACCCCTGGAGCGTGTATTCGACTATAGTGGGTACTGGGAAGGTGCTAGGGGATTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAGAATGAGATTCCAGGGGGACAGTACACCAATCCTACATT-CCCAGCTCAT------AGACTTGGTTCAAAGTTCAAGGCAGTTAAGAAGGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCAAAgtgagtcggagtgccaggtgctgggcgattacctctggtgcttgcctgac Alignment from CESAR agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgaatacaaccaacttcaactggagtatctgttattttagcaGTACCCCTGGAGCGTGTATTCGACTATAGTGGGTACTGGGAAGGTGCTAGGGGATTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAGAATGAGATTCCAGGGGGACAGTACACCAATCCTACATTCCCAGCTCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAGGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCAAAgtgagtcggagtgccaggtgctgggcgattacctctggtgcttgcctgac Alignment from Spaln_aa2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgaatacaaccaacttcaactggagtatctgttattttagCAGTACCCCTGGAGCGTGTATTCGACTATAGTGGGTACTGGGAAGGTGCTAGGGGATTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAGAATGAGATTCCAGGGGGACAGTACACCAATCCTACATTCCCAGCTCAT------AGACTTGGTTCAAAGTTCAAGGCAGTTAAGAAGGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCAAAgtgagtcggagtgccaggtgctgggcgattacctctggtgcttgcctgac Alignment from Spaln_nt2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAA-CCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgaatacaaccaacttcaactggagtatctgttattttagCAGTACCCCTGGAGCGTGTATTCGACTATAGTGGGTACTGGGAAGGTGCTAGGGGATTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAGAATGAGATTCCAGGGGGACAGTACACCAATCCTACA-TTCCCAGCTCATA------GACTTGGTTCAAAGTTCAAGGCAGTTAAGAAGGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCAAAgtgagtcggagtgccaggtgctgggcgattacctctggtgcttgcctgac Alignment from Pairagon AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAA-CCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgaatacaaccaacttcaactggagtatctgttattttagCAGTACCCCTGGAGCGTGTATTCGACTATAGTGGGTACTGGGAAGGTGCTAGGGGATTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAGAATGAGATTCCAGGGGGACAGTACACCAATCCTACATTCCCA-GCTCATA------GACTTGGTTCAAAGTTCAAGGCAGTTAAGAAGGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCAAAgtgagtcggagtgccaggtgctgggcgattacctctggtgcttgcctgac Alignment from Exonerate_protein2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgaatacaaccaacttcaactggagtatctgttattttagCAGTACCCCTGGAGCGTGTATTCGACTATAGTGGGTACTGGGAAGGTGCTAGGGGATTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAGAATGAGATTCCAGGGGGACAGTACACCAATCCTACATTCCCAGCTCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAGGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCAAAgtgagtcggagtgccaggtgctgggcgattacctctggtgcttgcctgac Alignment from Exonerate_coding2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgaatacaaccaacttcaactggagtatctgttattttagCAGTACCCCTGGAGCGTGTATTCGACTATAGTGGGTACTGGGAAGGTGCTAGGGGATTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAGAATGAGATTCCAGGGGGACAGTACACCAATCCTACATTCCCAGCTCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAGGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCAAAgtgagtcggagtgccaggtgctgggcgattacctctggtgcttgcctgac Alignment from GeneWise AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgaatacaaccaacttcaactggagtatctgttattttagCAGTACCCCTGGAGCGTGTATTCGACTATAGTGGGTACTGGGAAGGTGCTAGGGGATTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAGAATGAGATTCCAGGGGGACAGTACACCAATCCTACATTCCCAGCTCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAGGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCAAAgtgagtcggagtgccaggtgctgggcgattacctctggtgcttgcctgac #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCC-CGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCCTGTT-TGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttatgactgctgtttctc Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCCTGTTTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttagtatctttgtcttcc Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCCTGTTTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttatgactgctgtttctc Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCCTGTTTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttatgactgctgtttctc Alignment from Pairagon GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCCTGTTTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttatgactgctgtttctc Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCCTGTTTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttatgactgctgtttctc Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCCTGTTTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttatgactgctgtttctc Alignment from GeneWise GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCCTGTTTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttatgactgctgtttctc #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATT-CTGGTTAAAGACACCCAGGCCATGAAG ctgtcaccaagacttagtccgccccccctttctctcttgtttttttctagGTTGAGCTGGAGCAAGGCAAAACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTTAGTCA-AGACACCCAGTCCATGAAGgtaactctgaatctgatccagttaggtagtaacagtgccttcacagattg Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgtcaccaagacttagtccgccccccctttctctcttgtttttttctagGTTGAGCTGGAGCAAGGCAAAACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTTAGTCAAGACACCCAGTCCATGAAGgtaactctgaatctgatccagttaggtagtaacagtgccttcacagattg Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgtcaccaagacttagtccgccccccctttctctcttgtttttttctagGTTGAGCTGGAGCAAGGCAAAACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTTAGTCAAGACACCCAGTCCATGAAGgtaactctgaatctgatccagttaggtagtaacagtgccttcacagattg Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgtcaccaagacttagtccgccccccctttctctcttgtttttttctagGTTGAGCTGGAGCAAGGCAAAACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTTAGTCAAGACACCCAGTCCATGAAGgtaactctgaatctgatccagttaggtagtaacagtgccttcacagattg Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgtcaccaagacttagtccgccccccctttctctcttgtttttttctagGTTGAGCTGGAGCAAGGCAAAACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTTAGTCAAGACACCCAGTCCATGAAGgtaactctgaatctgatccagttaggtagtaacagtgccttcacagattg Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgtcaccaagacttagtccgccccccctttctctcttgtttttttctagGTTGAGCTGGAGCAAGGCAAAACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTTAGTCAAGACACCCAGTCCATGAAGgtaactctgaatctgatccagttaggtagtaacagtgccttcacagattg Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgtcaccaagacttagtccgccccccctttctctcttgtttttttctagGTTGAGCTGGAGCAAGGCAAAACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTTAGTCAAGACACCCAGTCCATGAAGgtaactctgaatctgatccagttaggtagtaacagtgccttcacagattg Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgtcaccaagacttagtccgccccccctttctctcttgtttttttctagGTTGAGCTGGAGCAAGGCAAAACGCTGCACATTAAAGCTTTGGCCATAAGTGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTTAGTCAAGACACCCAGTCCATGAAGgtaactctgaatctgatccagttaggtagtaacagtgccttcacagattg #### Pdcd11_ID10129_23 --> 0 - 1 Original Alignment GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTC-TTATGTCTGTCACTCATAg ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCCTTAT-TCTGTCACTCATTggtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from CESAR GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCCTTATTCTGTCACTCATTggtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from Spaln_aa2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCCTTATTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from Spaln_nt2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCCTTATTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from Pairagon GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCCTTATTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from Exonerate_protein2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCCTTATTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from Exonerate_coding2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCCTTATTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from GeneWise GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCCTTATTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCT-CCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagcATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCCTGCTC-AGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagcATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCCTGCTCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCCTGCTCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCCTGCTCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCCTGCTCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCCTGCTCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCCTGCTCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTTTCCTCTCCCTGCTCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGG-GATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGCGATGTGGGGC-TGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGCGATGTGGGGCTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGCGATGTGGGGCTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGCGATGTGGGGCTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGG-GATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGCGATGTGGGGC-TGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGCGATGTGGGGCTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGCGATGTGGGGCTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGCGATGTGGGGCTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTC-GGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTCGGGG-TGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTCGGGGTGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTCGGGGTGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTCGGGGTGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTCGGGGTGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTCGGGGTGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTCGGGGTGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctaatcagccactcttggggtcttgcctgtttcttggcccctgctgcagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTCGGGGTGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtgagttcaacaacagggctaattgcaacagagcaaggggcgggaagtga #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGA-AAAGAAGAGATCAACGTGATTcc ataccttctgtgctaattattattgcatggagctgggactgttattccagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCCAAAGAAG-AATCAATGTGATTccgtatgaggtcactggaagcaggtttacctttctatgtcccaatgatataa Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ataccttctgtgctaattattattgcatggagctgggactgttattccagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCCAAAGAAGAATCAATGTGATTccgtatgaggtcactggaagcaggtttacctttctatgtcccaatgatataa Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctgtgctaattattattgcatggagctgggactgttattccagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCCAAAGAAGAATCAATGTGATTCCgtatgaggtcactggaagcaggtttacctttctatgtcccaatgatataa Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctgtgctaattattattgcatggagctgggactgttattccagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCCAAAGAAGAATCAATGTGATTCCgtatgaggtcactggaagcaggtttacctttctatgtcccaatgatataa Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGG-AAAAGAAGAGATCAACGTGATTCC ataccttctgtgctaattattattgcatggagctgggactgttattccagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCCAAAGAAGA-ATCAATGTGATTCCgtatgaggtcactggaagcaggtttacctttctatgtcccaatgatataa Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctgtgctaattattattgcatggagctgggactgttattccagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCCAAAGAAGAATCAATGTGATTCCgtatgaggtcactggaagcaggtttacctttctatgtcccaatgatataa Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctgtgctaattattattgcatggagctgggactgttattccagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCCAAAGAAGAATCAATGTGATTCCgtatgaggtcactggaagcaggtttacctttctatgtcccaatgatataa Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctgtgctaattattattgcatggagctgggactgttattccagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCCAAAGAAGAATCAATGTGATTCCgtatgaggtcactggaagcaggtttacctttctatgtcccaatgatataa #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGG-AAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGT-CCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTCCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTCCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTCCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTCCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTCCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTCCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgattcttttgttttgctccaatagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTCCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgcgtttagaagttgttataactctgaatgctactctcctacaaaatga #### Pde6c_ID7550_20 --> 0 - 0 Original Alignment CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGAT-TTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaagcctctcaaatgtctgatttctcttttctagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATCTTTGTTTGTA-TTTTGTGTACAAGgtacggtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from CESAR CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaagcctctcaaatgtctgatttctcttttctagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATCTTTGTTTGTATTTTGTGTACAAGgtacggtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Spaln_aa2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaagcctctcaaatgtctgatttctcttttctagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATCTTTGTTTGTATTTTGTGTACAAGgtacggtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Spaln_nt2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGAT-TTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaagcctctcaaatgtctgatttctcttttctagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATCTTTGTTTGTA-TTTTGTGTACAAGgtacggtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Pairagon CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGAT-TTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaagcctctcaaatgtctgatttctcttttctagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATCTTTGTTTGTA-TTTTGTGTACAAGgtacggtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Exonerate_protein2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaagcctctcaaatgtctgatttctcttttctagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATCTTTGTTTGTATTTTGTGTACAAGgtacggtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Exonerate_coding2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaagcctctcaaatgtctgatttctcttttctagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATCTTTGTTTGTATTTTGTGTACAAGgtacggtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from GeneWise CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaagcctctcaaatgtctgatttctcttttctagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATCTTTGTTTGTATTTTGTGTACAAGgtacggtacctgaatgaaatatagcttaacttggtttcattgacaagtta #### Peo1_ID9266_3 --> 1 - 2 Original Alignment gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTG-CAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCCAATTCATGA-GGGTCATGAGCAGCTCTCCTCTGACaggtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from CESAR gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCCAATTCATGAGGGTCATGAGCAGCTCTCCTCTGACaggtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Spaln_aa2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCCAATTCATGAGGGTCATGAGCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Spaln_nt2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCCAATTCATGAGGGTCATGAGCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Pairagon GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTG-CAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCCAATTCATGA-GGGTCATGAGCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Exonerate_protein2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCCAATTCATGAGGGTCATGAGCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Exonerate_coding2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCCAATTCATGAGGGTCATGAGCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from GeneWise GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCCAATTCATGAGGGTCATGAGCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGT-GTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATT------CGTTACATACC-AGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from CESAR TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATTCGTTACATA------CCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATTCGTTACATA------CCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGA---CGTCAACTGCTTGCCTGATATTGTCTTCCCCAT-----TCGTTACATA-CCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Pairagon TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGA---CGTCAACTGCTTGCCTGATATTGTCTTCCCCATT-----CGTTACATA-CCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATTCGTTACATA------CCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Exonerate_coding2genome tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagtactttctaaagtgcgacgtcaactgcttgcctgatattgtcttccccattcgttacataccagtgccagctagtgcctacattcgaaaggtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from GeneWise TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATTCGTTACATA------CCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg #### Pga5_ID2971_7 --> 1 - 0 Original Alignment cATCTCCATGAATGGG-GAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttcactgtaaggtgattgtgttgctctcccttctattgcttcccccagcAATTCCATGAATGGGCGAGG-CATTGCATCTGATGGTAGCTGCCAAGGTATTATGGATACAGGGGCCTCATTGCTGACTGGCCCTCAAAGCACCATTGTTAACATTCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCAAGgtaattgttaacatgggcagcctgctctgggcctcctgccacatttttta Alignment from CESAR cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttcactgtaaggtgattgtgttgctctcccttctattgcttcccccagcAATTCCATGAATGGGCGAGGCATTGCATCTGATGGTAGCTGCCAAGGTATTATGGATACAGGGGCCTCATTGCTGACTGGCCCTCAAAGCACCATTGTTAACATTCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCAAGgtaattgttaacatgggcagcctgctctgggcctcctgccaaccttctac Alignment from Spaln_aa2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttcactgtaaggtgattgtgttgctctcccttctattgcttcccccagCAATTCCATGAATGGGCGAGGCATTGCATCTGATGGTAGCTGCCAAGGTATTATGGATACAGGGGCCTCATTGCTGACTGGCCCTCAAAGCACCATTGTTAACATTCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCAAGgtaattgttaacatgggcagcctgctctgggcctcctgccacatttttta Alignment from Spaln_nt2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttcactgtaaggtgattgtgttgctctcccttctattgcttcccccagCAATTCCATGAATGGGCGAGGCATTGCATCTGATGGTAGCTGCCAAGGTATTATGGATACAGGGGCCTCATTGCTGACTGGCCCTCAAAGCACCATTGTTAACATTCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCAAGgtaattgttaacatgggcagcctgctctgggcctcctgccacatttttta Alignment from Pairagon CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttcactgtaaggtgattgtgttgctctcccttctattgcttcccccagCAATTCCATGAATGGGCGAGGCATTGCATCTGATGGTAGCTGCCAAGGTATTATGGATACAGGGGCCTCATTGCTGACTGGCCCTCAAAGCACCATTGTTAACATTCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCAAGgtaattgttaacatgggcagcctgctctgggcctcctgccacatttttta Alignment from Exonerate_protein2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttcactgtaaggtgattgtgttgctctcccttctattgcttcccccagCAATTCCATGAATGGGCGAGGCATTGCATCTGATGGTAGCTGCCAAGGTATTATGGATACAGGGGCCTCATTGCTGACTGGCCCTCAAAGCACCATTGTTAACATTCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCAAGgtaattgttaacatgggcagcctgctctgggcctcctgccacatttttta Alignment from Exonerate_coding2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttcactgtaaggtgattgtgttgctctcccttctattgcttcccccagCAATTCCATGAATGGGCGAGGCATTGCATCTGATGGTAGCTGCCAAGGTATTATGGATACAGGGGCCTCATTGCTGACTGGCCCTCAAAGCACCATTGTTAACATTCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCAAGgtaattgttaacatgggcagcctgctctgggcctcctgccacatttttta Alignment from GeneWise CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttcactgtaaggtgattgtgttgctctcccttctattgcttcccccagCAATTCCATGAATGGGCGAGGCATTGCATCTGATGGTAGCTGCCAAGGTATTATGGATACAGGGGCCTCATTGCTGACTGGCCCTCAAAGCACCATTGTTAACATTCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCAAGgtaattgttaacatgggcagcctgctctgggcctcctgccacatttttta #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCG-GCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCACGCTG-TTATGCCCTTGTCTCCaagtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCACGCTGTTATGCCCTTGTCTCCaagtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCACGCTGTTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCG-GCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCACGCTG-TTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCACGCTGTTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCACGCTGTTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCACGCTGTTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTC-ACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCCACACTGC-CCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCCACACTGCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCCACACTGCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCCACACTGCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGT-CACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCCACACTG-CCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCCACACTGCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCCACACTGCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCCACACTGCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTG-CTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATG-CCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtatctccatcttttatttttgcagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtcttggtaattgcaatttaactagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGGTATCTCCATCTTTTATTTTTGCAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-------------------------GAAGGTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGGTATCTCCATCTTTTATTTTTGCAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-------------------------GAAGGTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGGTATCTCCATCTTTTATTTTTGCAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGA GAGAAGGTGGATGTCTACGTCATGA tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAgaagaggtatctccatcttttatttttgcag------GTTGATGTCTATGTCATGA Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGA GAGAAGGTGGATGTCTACGTCATGA tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAgaagaggtatctccatcttttatttttgcag------GTTGATGTCTATGTCATGA Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCCTCAATGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtatctccatcttttatttttgcagGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCA-GGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTCACACTCACTGGAGAAGAGgtaagtgtaattgcaatttaactagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTCGGCCGTC-TACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCaggtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTCACACTCACTGGAGAAGAGgtcttggtaattgcaatttaactagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTCGGCCGTCTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCaggtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGGTAAGTGTAATTGCAATTTAACTAgGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTCGGCCGTCTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Spaln_nt2Genome TGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGGTAAGTGTAATTGCAATTTAACTAGGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTCGGCCGTCTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTC-AGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGGTAAGTGTAATTGCAATTTAACTAGGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTCGGCCGTCT-ACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGgtaagtgtaattgcaatttaactaggttgatGTCTATGTC------ATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTCGGCCGTCTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Exonerate_coding2genome TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGgtaagtgtaattgcaatttaactaggttgatGTCTATGTC------ATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTCGGCCGTCTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGgtaagtgtaattgcaatttaactagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTCGGCCGTCTACCTTCCCAGTGTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATC-GACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagtTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTCGACAATG-TAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagtTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTCGACAATGTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTCGACAATGTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTCGACAATGTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCA-TCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTCGACAATG-TAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTCGACAATGTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTCGACAATGTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTCGACAATGTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGC-TTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCCTTTGCCA-CATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCatgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCCTTTGCCACATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCatgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCCTTTGCCACATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCCTTTGCCACATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCCTTTGCCACATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCCTTTGCCACATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCCTTTGCCACATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCCTTTGCCACATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAG-CAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCCAACTAG-GGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCCAACTAGGGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCCAACTAGGGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGC-AGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCCAACTAG-GGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAG-CAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCCAACTAG-GGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCCAACTAGGGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCCAACTAGGGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcccaagccttgctctgccctcagccatgttttgtttttcttttctagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCCAACTAGGGAAGAGAAACCCAAGgtgagccctggaggaggtgcatatacaggtaataggggagctggtcaacc #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAG---------------gt gactccctttacccaatgtctgagtctctgagcttctgttatttgtataggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGA-GGAAGTGTATGGCCACTGGgtgtaattgcactgagtcagtgggtgcagggaaatagcttagcacattttta Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt gactccctttacccaatgtctgagtctctgagcttctgttatttgtataggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAGGAAgtgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcctcattttg Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcacattttta Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAG-AGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcacattttta Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAG-AGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcacattttta Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcacattttta Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcacattttta Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcacattttta #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GCTCATCAGCGGCTCAAG-GAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGCGAAG-TGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAaggttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from CESAR GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGCGAAGTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAaggttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Spaln_aa2Genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGCGAAGTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Spaln_nt2Genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGCGAAGTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Pairagon GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGCGAAGTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Exonerate_protein2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGCGAAGTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Exonerate_coding2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGCGAAGTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from GeneWise GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAA---------------------------------------------------- gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGCGAAGTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGGTTGGTACAGATAGAAGGTCAGTGGGACTCCCTTTACCCAATGTCTGAGT #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTT-CTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggccccccccaacagccacaccaatttgttggtaccacctctccctatagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCGACAGGATCAAGACCTACGGGAGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCCTGGATG-CCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggccccccccaacagccacaccaatttgttggtaccacctctccctatagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCGACAGGATCAAGACCTACGGGAGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCCTGGATGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagccacaccaatttgttggtaccacctctccctatagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCGACAGGATCAAGACCTACGGGAGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCCTGGATGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagccacaccaatttgttggtaccacctctccctatagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCGACAGGATCAAGACCTACGGGAGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCCTGGATGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCT-TCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagccacaccaatttgttggtaccacctctccctatagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCGACAGGATCAAGACCTACGGGAGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCCTGGAT-GCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagccacaccaatttgttggtaccacctctccctatagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCGACAGGATCAAGACCTACGGGAGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCCTGGATGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from Exonerate_coding2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagccacaccaatttgttggtaccacctctccctatagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCGACAGGATCAAGACCTACGGGAGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCCTGGATGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata Alignment from GeneWise -CAGCGAGATGATTTGATTGCCAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagCCACACCAATTTGTTGGTACCACCTCTCCCTATAGAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCGACAGGATCAAGACCTACGGGAGTTGCATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCCTGGATGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaagtgtacttcaacctgctgtaacttatggtgtgtacttactggcata #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTG-CCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcaatttcaaagtcttggcagagatccaatgcttatgttttttctttaggaTACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCT-GCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggtaggtgacaaggtaaaggtcttatgtgtgccttaggtacatggagtctg Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcaatttcaaagtcttggcagagatccaatgcttatgttttttctttaggaTACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggtaggtgacaaggtaaaggtcttatgtgtgccttaggtacatggagtctg Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcaatttcaaagtcttggcagagatccaatgcttatgttttttctttagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtaggtgacaaggtaaaggtcttatgtgtgccttaggtacatggagtctg Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcaatttcaaagtcttggcagagatccaatgcttatgttttttctttagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtaggtgacaaggtaaaggtcttatgtgtgccttaggtacatggagtctg Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcaatttcaaagtcttggcagagatccaatgcttatgttttttctttagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtaggtgacaaggtaaaggtcttatgtgtgccttaggtacatggagtctg Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcaatttcaaagtcttggcagagatccaatgcttatgttttttctttagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtaggtgacaaggtaaaggtcttatgtgtgccttaggtacatggagtctg Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcaatttcaaagtcttggcagagatccaatgcttatgttttttctttagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtaggtgacaaggtaaaggtcttatgtgtgccttaggtacatggagtctg Alignment from GeneWise -------------------------------------------------GGATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG AGCAATTTCAAAGTCTTGGCAGAGATCCAATGCTTATGTTTTTTCTTTAGGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtaggtgacaaggtaaaggtcttatgtgtgccttaggtacatggagtctg #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ggtccagcttggtggccaaggagaccgagaagcccctctctctatcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAG-CTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTTTCTGCAATCCACTCAggtaggtctgggggctctggcactaaagcaatttcaaagtcttggcagaga Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ggtccagcttggtggccaaggagaccgagaagcccctctctctatcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTTTCTGCAATCCACTCAggtaggtctgggggctctggcactaaagcaatttcaaagtcttggcagaga Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccaaggagaccgagaagcccctctctctatcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTTTCTGCAATCCACTCAGgtaggtctgggggctctggcactaaagcaatttcaaagtcttggcagaga Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccaaggagaccgagaagcccctctctctatcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTTTCTGCAATCCACTCAGgtaggtctgggggctctggcactaaagcaatttcaaagtcttggcagaga Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccaaggagaccgagaagcccctctctctatcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAG-CTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTTTCTGCAATCCACTCAGgtaggtctgggggctctggcactaaagcaatttcaaagtcttggcagaga Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccaaggagaccgagaagcccctctctctatcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTTTCTGCAATCCACTCAGgtaggtctgggggctctggcactaaagcaatttcaaagtcttggcagaga Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccaaggagaccgagaagcccctctctctatcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTTTCTGCAATCCACTCAGgtaggtctgggggctctggcactaaagcaatttcaaagtcttggcagaga Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCA--------------------------------------------------- ggtccagcttggtggccaaggagaccgagaagcccctctctctatcccagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTTTCTGCAATCCACTCAGGTAGGTCTGGGGGCTCTGGCACTAAAGCAATTTCAAAGTCTTGGCAGAGA #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGC-ATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagatTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCCATAGTGGCCA-CGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagatTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCCATAGTGGCCACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCCATAGTGGCCACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCCATAGTGGCCACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGG-CATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCCATAGTGGCC-ACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCCATAGTGGCCACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCCATAGTGGCCACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCCATAGTGGCCACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag #### Plcb3_ID1918_13 --> 0 - 1 Original Alignment CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGC-AAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATG---GGTATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCCAAGCAGCCTC-GGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTggtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from CESAR CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCCAAGCAGCCTCGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTggtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Spaln_aa2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCCAAGCAGCCTCGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Spaln_nt2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGG---GTATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCCAAGCAGCCTCGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Pairagon CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCG-CAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGG---GTATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCCAAGCAGCCTC-GGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Exonerate_protein2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCCAAGCAGCCTCGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Exonerate_coding2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCCAAGCAGCCTCGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from GeneWise CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCCAAGCAGCCTCGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAAC-------CAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagaGGCATGAAGGGCAAGCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAACGAGAAGC-GAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTggtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAG------AGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagaGGCATGAAGGGCAAGCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAACGAGAAGCGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTggtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAA---CAACGAGAAGCGAGA------------------GACCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCT---TCTTGAGCAGCTGATGGACTTTGTCAACCAACAAC-GAGAAGCGAGAGACCCAA-GA-----------------TT--GTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACC-------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCT---TCTTGAGCAGCTGATGGACTTTGTCAACCAACAACGAGAAGC-GAGAGACCCAAGATT---------------------------GTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Exonerate_protein2genome CACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCTTCTTGAGCAGCTGATGGACTTTGTCAACCAACAACGAGAAGCGAGAGACCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Exonerate_coding2genome CACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCTTCTTGAGCAGCTGATGGACTTTGTCAACCAACAACGAGAAGCGAGAGACCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAG------AGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAACGAGAAGCGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca #### Plcb3_ID1923_8 --> 1 - 2 Original Alignment tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGC-CCGGATATTGACAAGATCCTGCTGGAGat tttggaactggctgaccaagattctcacactttgtcctcttattatttagtGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCCAGATATTG-CAAGATCCTGCTGGAGatgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from CESAR tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tttggaactggctgaccaagattctcacactttgtcctcttattatttagtGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCCAGATATTGCAAGATCCTGCTGGAGatgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from Spaln_aa2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacactttgtcctcttattatttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCCAGATATTGCAAGATCCTGCTGGAGATgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from Spaln_nt2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacactttgtcctcttattatttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCCAGATATTGCAAGATCCTGCTGGAGATgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from Pairagon TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCG-CCCGGATATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacactttgtcctcttattatttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCCAGATATTG-CAAGATCCTGCTGGAGATgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from Exonerate_protein2genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacactttgtcctcttattatttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCCAGATATTGCAAGATCCTGCTGGAGATgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from Exonerate_coding2genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacactttgtcctcttattatttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCCAGATATTGCAAGATCCTGCTGGAGATgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from GeneWise TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacactttgtcctcttattatttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCCAGATATTGCAAGATCCTGCTGGAGATgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca #### Plcb3_ID1925_6 --> 1 - 2 Original Alignment aTACACGAAGCTGAAGCTGCAGGTGAAC-CAGGATGGACGGATTCCGGTCAAGaa tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagaTACACAAAGCTGAAGCTGCAGGTCAATCCAGGACGGGC-GATTCCAGTCAAGaagtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from CESAR aTACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGG---ATTCCGGTCAAGaa tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagaTACACAAAGCTGAAGCTGCAGGTCAATCCA---GGACGGGCGATTCCAGTCAAGaagtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from Spaln_aa2Genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagATACACAAAGCTGAAGCTGCAGGTCAATCCAGGACGGGCGATTCCAGTCAAGAAgtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from Spaln_nt2Genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagATACACAAAGCTGAAGCTGCAGGTCAATCCAGGACGGGCGATTCCAGTCAAGAAgtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from Pairagon ATACACGAAGCTGAAGCTGCAGGTGAA-CCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagATACACAAAGCTGAAGCTGCAGGTCAATCCAGGACGGGC-GATTCCAGTCAAGAAgtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from Exonerate_protein2genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagATACACAAAGCTGAAGCTGCAGGTCAATCCAGGACGGGCGATTCCAGTCAAGAAgtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from Exonerate_coding2genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagATACACAAAGCTGAAGCTGCAGGTCAATCCAGGACGGGCGATTCCAGTCAAGAAgtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from GeneWise ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagATACACAAAGCTGAAGCTGCAGGTCAATCCAGGACGGGCGATTCCAGTCAAGAAgtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAACTG-GCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTACGCCATGAACA-ATTGGCTCAGAATGCCTCCCAGAACACATTCCTGCGGAAAgcgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTACGCCATGAACAATTGGCTCAGAATGCCTCCCAGAACACATTCCTGCGGAAAgcgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTACGCCATGAACAATTGGCTCAGAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTACGCCATGAACAATTGGCTCAGAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAACTG-GCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTACGCCATGAACA-ATTGGCTCAGAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from Exonerate_protein2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTACGCCATGAACAATTGGCTCAGAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from Exonerate_coding2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTACGCCATGAACAATTGGCTCAGAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTACGCCATGAACAATTGGCTCAGAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGG-GACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGGATATCAGCTCCATCAGACGACACAAGAA-AGGTCGTTATGCTCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGGATATCAGCTCCATCAGACGACACAAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGGATATCAGCTCCATCAGACGACACAAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGGATATCAGCTCCATCAGACGACACAAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGG-GACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGGATATCAGCTCCATCAGACGACACAAGAA-AGGTCGTTATGCTCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from Exonerate_protein2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGGATATCAGCTCCATCAGACGACACAAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from Exonerate_coding2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGGATATCAGCTCCATCAGACGACACAAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aacacgaccttgtacctttagaatataatggcctgtccctgtctgtctagGAGGTGGACACACTGGATATCAGCTCCATCAGACGACACAAGAAAGGTCGTTATGCTCGCCTGCCCAAAgtaaaacggttagttttgcagctaaataagcaccatagttagtaatacac #### Pnlip_ID12752_11 --> 1 - 2 Original Alignment gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTT-GGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt gtcccttcaaacatatccacaatgcttttggattcattttgttgttgcaggGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCTGAT------GTTCGGAG-TTTGCAGAAGGTTAAATTTATCTGGTACAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAgtgtgagttactcttgtacctaaagccagcaggactttgtgacttgagttca Alignment from CESAR gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt gtcccttcaaacatatccacaatgcttttggattcattttgttgttgcaggGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCT------GATGTTCGGAGTTTGCAGAAGGTTAAATTTATCTGGTACAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAgtgtgagttactcttgtacctaaagccagcaggactttgtgacttgagttca Alignment from Spaln_aa2Genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtcccttcaaacatatccacaatgcttttggattcattttgttgttgcagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCT------GATGTTCGGAGTTTGCAGAAGGTTAAATTTATCTGGTACAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgagttactcttgtacctaaagccagcaggactttgtgacttgagttca Alignment from Spaln_nt2Genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtcccttcaaacatatccacaatgcttttggattcattttgttgttgcagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCTGATGT-----TCGGAG-TTTGCAGAAGGTTAAATTTATCTGGTACAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgagttactcttgtacctaaagccagcaggactttgtgacttgagttca Alignment from Pairagon GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtcccttcaaacatatccacaatgcttttggattcattttgttgttgcagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCTGATGT-----TCGGAG-TTTGCAGAAGGTTAAATTTATCTGGTACAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgagttactcttgtacctaaagccagcaggactttgtgacttgagttca Alignment from Exonerate_protein2genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtcccttcaaacatatccacaatgcttttggattcattttgttgttgcagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCT------GATGTTCGGAGTTTGCAGAAGGTTAAATTTATCTGGTACAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgagttactcttgtacctaaagccagcaggactttgtgacttgagttca Alignment from Exonerate_coding2genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtcccttcaaacatatccacaatgcttttggattcattttgttgttgcagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCT------GATGTTCGGAGTTTGCAGAAGGTTAAATTTATCTGGTACAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgagttactcttgtacctaaagccagcaggactttgtgacttgagttca Alignment from GeneWise GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT gtcccttcaaacatatccacaatgcttttggattcattttgttgttgcagGGGCTCTCTGCAGCCAGGTACTTCGCATGGCAATGAATTTGACTCTGATGTTCGG------AGTTTGCAGAAGGTTAAATTTATCTGGTACAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAGTgtgagttactcttgtacctaaagccagcaggactttgtgacttgagttca #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTC-CTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagggAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTTGC-CTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagggAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTTGCCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTTGCCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTTGCCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTTGCCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTTGCCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTTGCCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTTGCCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCC-CCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcaggtATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCCTAG-GGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from CESAR gtATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcaggtATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCCTAGGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Spaln_aa2Genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCCTAGGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Spaln_nt2Genome GTATCACAAGGCTGC---AGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCCTAGGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Pairagon GTATCACAAG---GCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCCTAGGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Exonerate_protein2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCCTAGGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Exonerate_coding2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCCTAGGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from GeneWise GTATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCCTAGGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTAT-AAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt cacccagtttacttaatatacttccttatctgcctttctcccttggacaggtGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATCAAGATCA-ATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt cacccagtttacttaatatacttccttatctgcctttctcccttggacaggtGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATCAAGATCAATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATCAAGATCAATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATCAAGATCAATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTAT-AAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATCAAGATCA-ATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATCAAGATCAATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATCAAGATCAATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATCAAGATCAATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTTGAC-TGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccattgtttcccaccctctttcccagCAACTATTAGTTGACCTGTT-TAAACCCACTGAGgtaagatactctccttccccgcaggccttgggtaagtgtgcacacgagca Alignment from CESAR GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccattgtttcccaccctctttcccagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtaagatactctccttccccgcaggccttgggtaagtgtgcacacgagca Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccattgtttcccaccctctttcccagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtaagatactctccttccccgcaggccttgggtaagtgtgcacacgagca Alignment from Spaln_nt2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccattgtttcccaccctctttcccagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtaagatactctccttccccgcaggccttgggtaagtgtgcacacgagca Alignment from Pairagon GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccattgtttcccaccctctttcccagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtaagatactctccttccccgcaggccttgggtaagtgtgcacacgagca Alignment from Exonerate_protein2genome atgagaaaccctgtgctcaagaagccattgtttcccaccctctttcccagcaactattagttgacctgtttaaacccactgaggtaagatactctccttccccgcaggccttgggtaagtgtgcacacgagca Alignment from Exonerate_coding2genome atgagaaaccctgtgctcaagaagccattgtttcccaccctctttcccagcaactattagttgacctgtttaaacccactgaggtaagatactctccttccccgcaggccttgggtaagtgtgcacacgagca Alignment from GeneWise GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccattgtttcccaccctctttcccagCAACTATTAGTTGACCTGTTTAAACCCACTGAGgtaagatactctccttccccgcaggccttgggtaagtgtgcacacgagca #### Ppp1r32_ID2845_6 --> 2 - 0 Original Alignment atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCC-TCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagatCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTCTCACAGACCT-CCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from CESAR atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagatCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTCTCACAGACCTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from Spaln_aa2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTCTCACAGACCTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from Spaln_nt2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCC-CTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTCTCACAGACC-TCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from Pairagon ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCC-CTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTCTCACAGACC-TCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from Exonerate_protein2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTCTCACAGACCTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from Exonerate_coding2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTCTCACAGACCTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat Alignment from GeneWise ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT catgggatgaaggatggagacctgaagctcagtgtttctatctcttacagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCATAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTCTCACAGACCTCCCTGGGGAGCCTgtgagtgtgaatgtttaagggtccaacttgacagttcacaatattgagat #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGATGAT-TCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag ccgcaaataataggaccgtccttgtgccctggcttctcctgaccttgcagGTGACAGACCTATTATTGGATGATCTCGCTGGTTT-TCTCTGTGGGAACCATTGGCTGAAAaggtatgtgagacctctccacctcagcctcccccccataccgactggtggta Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag ccgcaaataataggaccgtccttgtgccctggcttctcctgaccttgcagGTGACAGACCTATTATTGGATGATCTCGCTGGTTTTCTCTGTGGGAACCATTGGCTGAAAaggtatgtgagacctctccacctcagcctcccccccataccgactggtggta Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ccgcaaataataggaccgtccttgtgccctggcttctcctgaccttgcagGTGACAGACCTATTATTGGATGATCTCGCTGGTTTTCTCTGTGGGAACCATTGGCTGAAAAGgtatgtgagacctctccacctcagcctcccccccataccgactggtggta Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGATGAT-TCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ccgcaaataataggaccgtccttgtgccctggcttctcctgaccttgcagGTGACAGACCTATTATTGGATGATCTCGCTGGT-TTTCTCTGTGGGAACCATTGGCTGAAAAGgtatgtgagacctctccacctcagcctcccccccataccgactggtggta Alignment from Pairagon GCGACAGACTTATTATTGGATGAT-TCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ccgcaaataataggaccgtccttgtgccctggcttctcctgaccttgcagGTGACAGACCTATTATTGGATGATCTCGCTGGT-TTTCTCTGTGGGAACCATTGGCTGAAAAGgtatgtgagacctctccacctcagcctcccccccataccgactggtggta Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ccgcaaataataggaccgtccttgtgccctggcttctcctgaccttgcagGTGACAGACCTATTATTGGATGATCTCGCTGGTTTTCTCTGTGGGAACCATTGGCTGAAAAGgtatgtgagacctctccacctcagcctcccccccataccgactggtggta Alignment from Exonerate_coding2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ccgcaaataataggaccgtccttgtgccctggcttctcctgaccttgcagGTGACAGACCTATTATTGGATGATCTCGCTGGTTTTCTCTGTGGGAACCATTGGCTGAAAAGgtatgtgagacctctccacctcagcctcccccccataccgactggtggta Alignment from GeneWise GGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGGCGACA ccgcaaataataggaccgtccttgtgccctggcttctcctgaccttgcaggtgacagacctattattggatgatctcgctggttttctctgtgggaaccattggctgaaaaggtatgtgagACCTCTCCACCTCAGCCTCCCCCCCATAC------------ #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTGGCT-GACCCCACTGGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTCGACC-CACTGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from CESAR GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTCGACCCACTGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTCGACCCACTGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTCGACCCACTGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from Pairagon GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTCGACCCACTGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTCGACCCACTGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTCGACCCACTGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from GeneWise GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTCGACCCACTGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAG-GAGCAGCTCATCGACATCAAAg gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGC-CATTGACATCAAAggtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCCATTGACATCAAAggtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAG-GAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGC-CATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Exonerate_protein2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Exonerate_coding2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG atagcttttctcctgtatacaccctaaaaaaattTCCTATGTTTTA---GTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATG-CTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtacgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCCTGCACAGCT-CACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtcatatttcattgtaaagtccctatacctgtctccttctctccac Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgagtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCCTGCACAGCTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtcatatttcattgtaaagtccctatcaacctcctttcccattccc Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtacgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCCTGCACAGCTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacctgtctccttctctccac Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtacgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCCTGCACAGCTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacctgtctccttctctccac Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATG-CTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtacgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCCTGCACAGC-TCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacctgtctccttctctccac Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtacgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCCTGCACAGCTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacctgtctccttctctccac Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtacgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCCTGCACAGCTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacctgtctccttctctccac Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGGTACGTCCAATCTGTCTCTTGATGCCTCTGCAGGATGCAGTCATGCCTGCACAGCTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacctgtctccttctctccac #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTA-CCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aagccatatttcattgtaaagtccctatcaacctcctttcccattcccagccCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCCTCAAG-TGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from CESAR ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aagtcatatttcattgtaaagtccctatcaacctcctttcccattcccagccCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCCTCAAGTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aagccatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCCTCAAGTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aagccatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCCTCAAGTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Pairagon CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aagccatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCCTCAAGTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aagccatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCCTCAAGTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aagccatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCCTCAAGTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from GeneWise CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aagccatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCCTCAAGTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATG-ACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGCACCCCTG-GATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGCACCCCTGGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGCACCCCTGGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGCACCCCTGGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Pairagon GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGCACCCCTGGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGCACCCCTGGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGCACCCCTGGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGCACCCCTGGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCTGACATC-CAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt cttgaaggcaccagaccaacttgtgattaattttcttgtctgttttttagTACTGGGCCTTCTTTGACATCCCAGACAGGGC-TGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtacgagatcactgagacactgagcattccttctattttggcagtagttt Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt cttgaaggcaccagaccaacttgtgattaattttcttgtctgttttttagTACTGGGCCTTCTTTGACATCCCAGACAGGGCTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtacgagatcactgagacactgagcattccttctattttggcagtagttt Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttgaaggcaccagaccaacttgtgattaattttcttgtctgttttttagTACTGGGCCTTCTTTGACATCCCAGACAGGGCTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacgagatcactgagacactgagcattccttctattttggcagtagttt Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttgaaggcaccagaccaacttgtgattaattttcttgtctgttttttagTACTGGGCCTTCTTTGACATCCCAGACAGGGCTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacgagatcactgagacactgagcattccttctattttggcagtagttt Alignment from Pairagon TACTGGGCCTTCTCTGACAT-CCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttgaaggcaccagaccaacttgtgattaattttcttgtctgttttttagTACTGGGCCTTCTTTGACATCCCAGACAGGGC-TGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacgagatcactgagacactgagcattccttctattttggcagtagttt Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttgaaggcaccagaccaacttgtgattaattttcttgtctgttttttagTACTGGGCCTTCTTTGACATCCCAGACAGGGCTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacgagatcactgagacactgagcattccttctattttggcagtagttt Alignment from Exonerate_coding2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttgaaggcaccagaccaacttgtgattaattttcttgtctgttttttagTACTGGGCCTTCTTTGACATCCCAGACAGGGCTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacgagatcactgagacactgagcattccttctattttggcagtagttt Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT cttgaaggcaccagaccaacttgtgattaattttcttgtctgttttttagTACTGGGCCTTCTTTGACATCCCAGACAGGGCTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtacgagatcactgagacactgagcattccttctattttggcagtagttt #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAG-CTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTTGG-CAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTTGGCAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTTGGCAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTTGGCAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTTGGCAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTTGGCAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTTGGCAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTTGGCAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg #### Pygm_ID1680_4 --> 2 - 0 Original Alignment ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGG-ATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagctTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGCATCCGCT-TGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from CESAR ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagctTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGCATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from Spaln_aa2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGCATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from Spaln_nt2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGCATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from Pairagon CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGG-ATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGCATCCGCT-TGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from Exonerate_protein2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGCATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from Exonerate_coding2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGCATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from GeneWise CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGCATCCGCTTGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGT-GATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTCGATCCTGTGC-CACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTCGATCCTGTGCCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTCGATCCTGTGCCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTCGATCCTGTGCCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGT-GATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTCGATCCTGTGC-CACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTCGATCCTGTGCCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTCGATCCTGTGCCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTCGATCCTGTGCCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg #### Pygm_ID1687_11 --> 0 - 2 Original Alignment CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCT-CGCATCCATTCGGAGATCCTCAAGAAAACCat aaagaggaagacctctgaagctggggtcccactcccgtttctattaccagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTGGAGGACGGAGCAGTGAGACGCATCAACATGTCACACCTGTGCATTGCAGGCTCACATGCTGTCAATAGTGTGGCTCCGCATCC-TTCAGAGATCCTCAAGAAAACCatgtatgtaacccctctcctgagatagggtcaacccctttatcaggcacctg Alignment from CESAR CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat aaagaggaagacctctgaagctggggtcccactcccgtttctattaccagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTGGAGGACGGAGCAGTGAGACGCATCAACATGTCACACCTGTGCATTGCAGGCTCACATGCTGTCAATAGTGTGGCTCCGCATCCTTCAGAGATCCTCAAGAAAACCatgtatgtaacccctctcctgagatagggtcaacccctttatcaggcacctg Alignment from Spaln_aa2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaagaggaagacctctgaagctggggtcccactcccgtttctattaccagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTGGAGGACGGAGCAGTGAGACGCATCAACATGTCACACCTGTGCATTGCAGGCTCACATGCTGTCAATAGTGTGGCTCCGCATCCTTCAGAGATCCTCAAGAAAACCATgtatgtaacccctctcctgagatagggtcaacccctttatcaggcacctg Alignment from Spaln_nt2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaagaggaagacctctgaagctggggtcccactcccgtttctattaccagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTGGAGGACGGAGCAGTGAGACGCATCAACATGTCACACCTGTGCATTGCAGGCTCACATGCTGTCAATAGTGTGGCTCCGCATCCTTCAGAGATCCTCAAGAAAACCATgtatgtaacccctctcctgagatagggtcaacccctttatcaggcacctg Alignment from Pairagon CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCT-CGCATCCATTCGGAGATCCTCAAGAAAACCAT aaagaggaagacctctgaagctggggtcccactcccgtttctattaccagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTGGAGGACGGAGCAGTGAGACGCATCAACATGTCACACCTGTGCATTGCAGGCTCACATGCTGTCAATAGTGTGGCTCCGCATCC-TTCAGAGATCCTCAAGAAAACCATgtatgtaacccctctcctgagatagggtcaacccctttatcaggcacctg Alignment from Exonerate_protein2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaagaggaagacctctgaagctggggtcccactcccgtttctattaccagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTGGAGGACGGAGCAGTGAGACGCATCAACATGTCACACCTGTGCATTGCAGGCTCACATGCTGTCAATAGTGTGGCTCCGCATCCTTCAGAGATCCTCAAGAAAACCATgtatgtaacccctctcctgagatagggtcaacccctttatcaggcacctg Alignment from Exonerate_coding2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaagaggaagacctctgaagctggggtcccactcccgtttctattaccagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTGGAGGACGGAGCAGTGAGACGCATCAACATGTCACACCTGTGCATTGCAGGCTCACATGCTGTCAATAGTGTGGCTCCGCATCCTTCAGAGATCCTCAAGAAAACCATgtatgtaacccctctcctgagatagggtcaacccctttatcaggcacctg Alignment from GeneWise CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaagaggaagacctctgaagctggggtcccactcccgtttctattaccagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTGGAGGACGGAGCAGTGAGACGCATCAACATGTCACACCTGTGCATTGCAGGCTCACATGCTGTCAATAGTGTGGCTCCGCATCCTTCAGAGATCCTCAAGAAAACCATgtatgtaacccctctcctgagatagggtcaacccctttatcaggcacctg #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGG-ACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGACACTGCTGTAG-GGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCaagtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGACACTGCTGTAGGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCaagtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGACACTGCTGTAGGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGACACTGCTGTAGGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Pairagon CTCTCAGCTCTGGTTCGG-ACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGACACTGCTGTAG-GGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGACACTGCTGTAGGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGACACTGCTGTAGGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGACACTGCTGTAGGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg #### Rasgrp2_ID1703_2 --> 2 - 2 Original Alignment atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGG-TACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagatGATTCTGGAAAGGTGCAAGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGCTACATAC-TTCCACTCAGCTGGCTTCAAAACTGCTCCACttgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from CESAR atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagatGATTCTGGAAAGGTGCAAGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGCTACATACTTCCACTCAGCTGGCTTCAAAACTGCTCCACttgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from Spaln_aa2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAAGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGCTACATACTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from Spaln_nt2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAAGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGCTACATACTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from Pairagon ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGG-TACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAAGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGCTACATA-CTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from Exonerate_protein2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAAGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGCTACATACTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from Exonerate_coding2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAAGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGCTACATACTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc Alignment from GeneWise ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT gctgtgcccccagatcaaagctccaagacatacttcttccctccctgtagATGATTCTGGAAAGGTGCAAGATTCACAGCTAGTGCGTATGTTTCTCATGATGTATCCATGGCTACATACTTCCACTCAGCTGGCTTCAAAACTGCTCCACTTgtagctttggtggcccataacgttgggtatctggtttcaaaccattctgc #### Rasgrp2_ID1704_3 --> 1 - 2 Original Alignment cTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCag ttgtagccttaatcaaaaatgcccatctggcaacccctcctctcttgaagcTATCAGCAATCCCGGAAGGATAACTCTAATCTCTCTAC-GATGAAAACGTGTCACTTGGTCaggtaagatgggtcttgactcgtcccttgctacctttttgaaatgtatcttt Alignment from CESAR cTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCag ttgtagccttaatcaaaaatgcccatctggcaacccctcctctcttgaagcTATCAGCAATCCCGGAAGGATAACTCTAATCTCTCTACGATGAAAACGTGTCACTTGGTCaggtaagatgggtcttgactcgtcccttgctacctttttgaaatgtatcttt Alignment from Spaln_aa2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG ttgtagccttaatcaaaaatgcccatctggcaacccctcctctcttgaagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCTCTACGATGAAAACGTGTCACTTGGTCAGgtaagatgggtcttgactcgtcccttgctacctttttgaaatgtatcttt Alignment from Spaln_nt2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG ttgtagccttaatcaaaaatgcccatctggcaacccctcctctcttgaagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCTCTACGATGAAAACGTGTCACTTGGTCAGgtaagatgggtcttgactcgtcccttgctacctttttgaaatgtatcttt Alignment from Pairagon CTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCAG ttgtagccttaatcaaaaatgcccatctggcaacccctcctctcttgaagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCTCTAC-GATGAAAACGTGTCACTTGGTCAGgtaagatgggtcttgactcgtcccttgctacctttttgaaatgtatcttt Alignment from Exonerate_protein2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG ttgtagccttaatcaaaaatgcccatctggcaacccctcctctcttgaagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCTCTACGATGAAAACGTGTCACTTGGTCAGgtaagatgggtcttgactcgtcccttgctacctttttgaaatgtatcttt Alignment from Exonerate_coding2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG ttgtagccttaatcaaaaatgcccatctggcaacccctcctctcttgaagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCTCTACGATGAAAACGTGTCACTTGGTCAGgtaagatgggtcttgactcgtcccttgctacctttttgaaatgtatcttt Alignment from GeneWise CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG ttgtagccttaatcaaaaatgcccatctggcaacccctcctctcttgaagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCTCTACGATGAAAACGTGTCACTTGGTCAGgtaagatgggtcttgactcgtcccttgctacctttttgaaatgtatcttt #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTCTTCGGT-GCTTATACAGCTTTCCTCTTCATCCGCACAg ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagcgTTTCAGTTCTCCTACACTGCTGTCTTTGGTCGCTTATACAG-CTTCCTCTTCATTCGCACAggtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGT-GCTTATACAGCTTTCCTCTTCATCCGCACAg ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagcgTTTCAGTTCTCCTACACTGCTGTCTTTGGTCGCTTATACAG-CTTCCTCTTCATTCGCACAggtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTGTCTTTGGTCGCTTATACAGCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTGTCTTTGGTCGCTTATACAGCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGTCTTCGGT-GCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTGTCTTTGGTCGCTTATACAGC-TTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTGTCTTTGGTCGCTTATACAGCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTGTCTTTGGTCGCTTATACAGCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTGTCTTTGGTCGCTTATACAGCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt #### Rce1_ID576_6 --> 2 - 1 Original Alignment CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTC-CGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTCTTTTTTGGGGTTggtgagtctttgttgttttttcctatcacagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCCGCCAGA-CAGTGTGGGGAGCATCTTTGTGTCTACAggtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from CESAR CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTCTTTTTTGGGGTTggtgagcctttgttgttttttcctatcacagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCCGCCAGACAGTGTGGGGAGCATCTTTGTGTCTACAggtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Spaln_aa2Genome CCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGGTGAGTCTTTGTTGTTTTTTCCTATCACAGCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCCGCCAGACAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Spaln_nt2Genome CTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCC-GCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTCTTTTTTGG----GgttggtgagtctttgttgttttttcctatcacagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCCGCCAGA-CAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Pairagon CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTT-CCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtgagtctttgttgttttttcctatcacagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCCGCCAGA-CAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Exonerate_protein2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtgagtctttgttgttttttcctatcacagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCCGCCAGACAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Exonerate_coding2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtgagtctttgttgttttttcctatcacagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCCGCCAGACAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from GeneWise CCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGGTGAGTCTTTGTTGTTTTTTCCTATCACAGCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCCGCCAGACAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt #### Rcor2_ID2092_3 --> 2 - 0 Original Alignment ttGACAAGTACATTGCAATG-GCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagttGACAAGTACATTGCAATGCGCCAAAG-GAAGCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from CESAR ttGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagttGACAAGTACATTGCAATGCGCCAAAGGAAGCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from Spaln_aa2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGCGCCAAAGGAAGCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from Spaln_nt2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGCGCCAAAGGAAGCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from Pairagon TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGCGCCAAAGGAAGCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from Exonerate_protein2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGCGCCAAAGGAAGCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from Exonerate_coding2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGCGCCAAAGGAAGCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from GeneWise TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGCGCCAAAGGAAGCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGT-CGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCCAAACTA-CGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCCAAACTACGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCCAAACTACGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCCAAACTACGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCCAAACTACGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCCAAACTACGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCCAAACTACGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG atttgaggggagagtcttatttggcctctgacctcgcacgtgtcctgcagCTCCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCCAAACTACGTGATGGATAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtaagtagtgcagcttctgacttagggaaatgggtggggggccaaaagta #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACT-GGAGACCCCAAGCGAGAG tatcctgagtaggaccttccttcatttctcatttatcttcaatgtcatagtGATGAAGTAGAAGAGGGACGGGGAGCTGTGAGTGAGGGGGAGCCAGATACTCGGAG-CCCCAAGCGAAAGgcgagttccatgagctcttgtgtcctatccaacactaagcttgtccctgg Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggaccttccttcatttctcatttatcttcaatgtcatagtGATGAAGTAGAAGAGGGACGGGGAGCTGTGAGTGAGGGGGAGCCAGATACTCGGAGCCCCAAGCGAAAGgcgagttccatgagctcttgtgtcctatccaacactaagcttgtccctgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggaccttccttcatttctcatttatcttcaatgtcatagTGATGAAGTAGAAGAGGGACGGGGAGCTGTGAGTGAGGGGGAGCCAGATACTCGGAGCCCCAAGCGAAAGgcgagttccatgagctcttgtgtcctatccaacactaagcttgtccctgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggaccttccttcatttctcatttatcttcaatgtcatagTGATGAAGTAGAAGAGGGACGGGGAGCTGTGAGTGAGGGGGAGCCAGATACTCGGAGCCCCAAGCGAAAGgcgagttccatgagctcttgtgtcctatccaacactaagcttgtccctgg Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggaccttccttcatttctcatttatcttcaatgtcatagTGATGAAGTAGAAGAGGGACGGGGAGCTGTGAGTGAGGGGGAGCCAGATACTCGGAGCCCCAAGCGAAAGgcgagttccatgagctcttgtgtcctatccaacactaagcttgtccctgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggaccttccttcatttctcatttatcttcaatgtcatagTGATGAAGTAGAAGAGGGACGGGGAGCTGTGAGTGAGGGGGAGCCAGATACTCGGAGCCCCAAGCGAAAGgcgagttccatgagctcttgtgtcctatccaacactaagcttgtccctgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggaccttccttcatttctcatttatcttcaatgtcatagTGATGAAGTAGAAGAGGGACGGGGAGCTGTGAGTGAGGGGGAGCCAGATACTCGGAGCCCCAAGCGAAAGgcgagttccatgagctcttgtgtcctatccaacactaagcttgtccctgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG--------------------- tatcctgagtaggaccttccttcatttctcatttatcttcaatgtcatagTGATGAAGTAGAAGAGGGACGGGGAGCTGTGAGTGAGGGGGAGCCAGATACTCGGAGCCCCAAGCGAAAGGCGAGTTCCATGAGCTCTTGTgtcctatccaacactaagcttgtccctgg #### Rela_ID1129_6 --> 2 - 1 Original Alignment ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACC-CCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagttCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCCTG-CCTCTCACATCCGATTTTTGATAACcgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from CESAR ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagttCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCCTGCCTCTCACATCCGATTTTTGATAACcgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Spaln_aa2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCCTGCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Spaln_nt2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCCTGCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Pairagon TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCCTGCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Exonerate_protein2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCCTGCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Exonerate_coding2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCCTGCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from GeneWise TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCCTGCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCT-GGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTCGGGAGCT-TCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGggtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTCGGGAGCTTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGggtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTCGGGAGCTTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTCGGGAGCTTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCT-GGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTCGGGAGCT-TCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTCGGGAGCTTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTCGGGAGCTTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTCGGGAGCTTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg #### Rin1_ID808_3 --> 0 - 1 Original Alignment ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGG-CTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg ggacagggttggacatagagacccagaatctgcttcctgaacctctctagACCTTCCTGGTACGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGCTTGCCAGAAC-TAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTggtaagtaggttagctaagggatcggggcacaaggacaagtacatgaatgg Alignment from CESAR ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg ggacagggttggacatagagacccagaatctgcttcctgaacctctctagACCTTCCTGGTACGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGCTTGCCAGAACTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTggtaagtaggttagctaagggatcggggcacaaggacaagtacatgaatgg Alignment from Spaln_aa2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggttggacatagagacccagaatctgcttcctgaacctctctagACCTTCCTGGTACGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGCTTGCCAGAACTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtaggttagctaagggatcggggcacaaggacaagtacatgaatgg Alignment from Spaln_nt2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggttggacatagagacccagaatctgcttcctgaacctctctagACCTTCCTGGTACGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGCTTGCCAGAACTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtaggttagctaagggatcggggcacaaggacaagtacatgaatgg Alignment from Pairagon ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGC-TGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggttggacatagagacccagaatctgcttcctgaacctctctagACCTTCCTGGTACGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGCTTGCCAGAA-CTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtaggttagctaagggatcggggcacaaggacaagtacatgaatgg Alignment from Exonerate_protein2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggttggacatagagacccagaatctgcttcctgaacctctctagACCTTCCTGGTACGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGCTTGCCAGAACTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtaggttagctaagggatcggggcacaaggacaagtacatgaatgg Alignment from Exonerate_coding2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggttggacatagagacccagaatctgcttcctgaacctctctagACCTTCCTGGTACGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGCTTGCCAGAACTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtaggttagctaagggatcggggcacaaggacaagtacatgaatgg Alignment from GeneWise ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggttggacatagagacccagaatctgcttcctgaacctctctagACCTTCCTGGTACGAAAATCTAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGCTTGCCAGAACTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtaggttagctaagggatcggggcacaaggacaagtacatgaatgg #### Rin1_ID811_6 --> 2 - 1 Original Alignment agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGA-TATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGCTATCATGTGC-AGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTggtaggtcctttcaagggtatggtttcgcacaaactcccctaatggggcta Alignment from CESAR agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGCTATCATGTGCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTggtaggtcctttcaagggtatggtttcgcacaaactcccctaactttatgc Alignment from Spaln_aa2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGCTATCATGTGCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaatggggcta Alignment from Spaln_nt2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGCTATCATGTGCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaatggggcta Alignment from Pairagon AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGA-TATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGCTATCATGTG-CAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaatggggcta Alignment from Exonerate_protein2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGCTATCATGTGCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaatggggcta Alignment from Exonerate_coding2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGCTATCATGTGCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaatggggcta Alignment from GeneWise AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGCTATCATGTGCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaatggggcta #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCA-GATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTCGATGGTT-CCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTCGATGGTTCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTCGATGGTTCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTCGATGGTTCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGC-AGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTCGATGGTT-CCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTCGATGGTTCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTCGATGGTTCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTCGATGGTTCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat #### Rpp30_ID7089_9 --> 0 - 2 Original Alignment CCTTTGGAAATA-AGAGGACCATATGACGTGGCAAACtt gtaaacaacctgtgcaatggttcatacactgcatcccctcctgtgcttagCCCTTGGAAATACCGAGGACCAT-CGATGTGGCTAACttgtgaggtctcagtataagttcattagtatgatgtttggggtagccctctc Alignment from CESAR CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACtt gtaaacaacctgtgcaatggttcatacactgcatcccctcctgtgcttagCCCTTGGAAATACCGAGGACCATCGATGTGGCTAACttgtgaggtctcagtataagttcattagtatgatgtttggggtagccctctc Alignment from Spaln_aa2Genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtaaacaacctgtgcaatggttcatacactgcatcccctcctgtgcttagCCCTTGGAAATACCGAGGACCATCGATGTGGCTAACTTgtgaggtctcagtataagttcattagtatgatgtttggggtagccctctc Alignment from Spaln_nt2Genome CCTTTGGAAATAA-GAGGACCATATGACGTGGCAAACTT gtaaacaacctgtgcaatggttcatacactgcatcccctcctgtgcttagCCCTTGGAAATACCGAGGACCAT-CGATGTGGCTAACTTgtgaggtctcagtataagttcattagtatgatgtttggggtagccctctc Alignment from Pairagon CCTTTGGAAATA-AGAGGACCATATGACGTGGCAAACTT gtaaacaacctgtgcaatggttcatacactgcatcccctcctgtgcttagCCCTTGGAAATACCGAGGACCAT-CGATGTGGCTAACTTgtgaggtctcagtataagttcattagtatgatgtttggggtagccctctc Alignment from Exonerate_protein2genome gtaaacaacctgtgcaatggttcatacactgcatcccctcctgtgcttagcccttggaaataccgaggaccatcgatgtggctaacttgtgaggtctcagtataagttcattagtatgatgtttggggtagccctctc Alignment from Exonerate_coding2genome gtaaacaacctgtgcaatggttcatacactgcatcccctcctgtgcttagcccttggaaataccgaggaccatcgatgtggctaacttgtgaggtctcagtataagttcattagtatgatgtttggggtagccctctc Alignment from GeneWise gtaaacaacctgtgcaatggttcatacactgcatcccctcctgtgcttagcccttggaaataccgaggaccatcgatgtggctaacttgtgaggtctcagtataagttcattagtatgatgtttggggtagccctctc #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGT-CCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctctttcagtaccctgaatctgtaattttgctgtttcctttcttcccagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCCAGATG-CACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagggcctgggattatggggaagaggattgctccaagggattggcaat Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctctttcagtaccctgaatctgtaattttgctgtttcctttcttcccagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCCAGATGCACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagggcctgggattatggggaagaggattgctccaagggattggcaat Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctctttcagtaccctgaatctgtaattttgctgtttcctttcttcccagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCCAGATGCACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagggcctgggattatggggaagaggattgctccaagggattggcaat Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCC-AGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctctttcagtaccctgaatctgtaattttgctgtttcctttcttcccagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCCAGATG-CACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagggcctgggattatggggaagaggattgctccaagggattggcaat Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAG-TCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctctttcagtaccctgaatctgtaattttgctgtttcctttcttcccagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCCAGATG-CACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagggcctgggattatggggaagaggattgctccaagggattggcaat Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctctttcagtaccctgaatctgtaattttgctgtttcctttcttcccagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCCAGATGCACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagggcctgggattatggggaagaggattgctccaagggattggcaat Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctctttcagtaccctgaatctgtaattttgctgtttcctttcttcccagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCCAGATGCACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagggcctgggattatggggaagaggattgctccaagggattggcaat Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctctttcagtaccctgaatctgtaattttgctgtttcctttcttcccagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCCAGATGCACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagggcctgggattatggggaagaggattgctccaagggattggcaat #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTT-TTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcagatagacaagctgagttgacatagtctgctggtgtttaaccccacagAGGCACCCTTTCCTTTCGAC-CATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtatgtacatggaggtcattttgactacatagtatggagagtacctctct Alignment from CESAR AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcagatagacaagctgagttgacatagtctgctggtgtttaaccccacagAGGCACCCTTTCCTTTCGACCATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtatgtacatggaggtcattttgactacatagtatggagagtacctctct Alignment from Spaln_aa2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcagatagacaagctgagttgacatagtctgctggtgtttaaccccacagAGGCACCCTTTCCTTTCGACCATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtatgtacatggaggtcattttgactacatagtatggagagtacctctct Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcagatagacaagctgagttgacatagtctgctggtgtttaaccccacagAGGCACCCTTTCCTTTCGACCATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtatgtacatggaggtcattttgactacatagtatggagagtacctctct Alignment from Pairagon AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcagatagacaagctgagttgacatagtctgctggtgtttaaccccacagAGGCACCCTTTCCTTTCGACCATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtatgtacatggaggtcattttgactacatagtatggagagtacctctct Alignment from Exonerate_protein2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcagatagacaagctgagttgacatagtctgctggtgtttaaccccacagAGGCACCCTTTCCTTTCGACCATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtatgtacatggaggtcattttgactacatagtatggagagtacctctct Alignment from Exonerate_coding2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcagatagacaagctgagttgacatagtctgctggtgtttaaccccacagAGGCACCCTTTCCTTTCGACCATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtatgtacatggaggtcattttgactacatagtatggagagtacctctct Alignment from GeneWise AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcagatagacaagctgagttgacatagtctgctggtgtttaaccccacagAGGCACCCTTTCCTTTCGACCATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtatgtacatggaggtcattttgactacatagtatggagagtacctctct #### Rps6kb2_ID380_2 --> 0 - 2 Original Alignment GACGTGTGTCCC-CTTGGCGAATTAAGGGCTGCTGGCCTGga gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCA-ATTAAGGGCTGCTGGCCTGgagtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from CESAR GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGga gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAATTAAGGGCTGCTGGCCTGgagtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from Spaln_aa2Genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from Spaln_nt2Genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from Pairagon GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from Exonerate_protein2genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from Exonerate_coding2genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from GeneWise GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTG-AAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctggggttagatagccttattgtttgacttaacttttttcttttccagcATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGGGCGTGG---CAAGGATGGTG-CGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGggtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGT---GGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctggggttagatagccttattgtttgacttaacttttttcttttccagcATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGGGCGTGG------CAAGGATGGTGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGggtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGGGCGTGG---CAAGGATGGTGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGGGCGTGGC--AAGGATGGT-GCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGGGCGTGGC--AAGGATGGT-GCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGGGCGTGG---CAAGGATGGTGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from Exonerate_coding2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGGGCGTGG---CAAGGATGGTGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttgacttaacttttttcttttccagCATCGAGGAAATTTCGGCTGATTCAGAGGATGAGTTCGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGGGCGTGG---CAAGGATGGTGCGGTGACGGGCCTCTCAACTTC------CCAAAGGTTGCACATCGTGTCCGGGgtggggaaggaaagctgaccagggaaaagttacccccccctgttgttgga #### Rrp12_ID8296_27 --> 1 - 2 Original Alignment aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAA-GTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag gatgaggggttcttggtaacgtcaagactataccttttccatctccacaggTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAACGTACTGATTA-CATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACaggtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from CESAR aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag gatgaggggttcttggtaacgtcaagactataccttttccatctccacaggTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAACGTACTGATTACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACaggtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Spaln_aa2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAACGTACTGATTACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Spaln_nt2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAACGTACTGATTACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Pairagon ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAA-GTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAACGTACTGAT-TACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Exonerate_protein2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAACGTACTGATTACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Exonerate_coding2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAACGTACTGATTACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from GeneWise ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAACGTACTGATTACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCAT-GAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATCGAAGAGT-CATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATCGAAGAGTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATCGAAGAGTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATCGAAGAGTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCAT-GAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATCGAAGAG-TCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATCGAAGAGTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Exonerate_coding2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATCGAAGAGTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATCGAAGAGTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGT-GACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCC-GGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATgcgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGT---GACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCG---GGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATgcgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGT-GACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCC-GGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGG-ATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGCATGAAGA-GCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGCATGAAGAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGCATGAAGAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGCATGAAGAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Pairagon GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGG-ATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGCATGAAG-AGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGCATGAAGAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGCATGAAGAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGCATGAAGAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACC-ATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCA-TGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATC-GTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTC-ATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGAC-CCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcaggCTTCGGGGCCGGGGTAGACACCGAGTTCCC------AAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTTGTGG-CAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcaggCTTCGGGGCCGGGGTAGACACCGAGTTCCC------AAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTTGTGGCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCC------AAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTTGTGGCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCC------CAAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTTGTGGCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCC------AAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTTGTGGCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCC------AAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTTGTGGCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCC------AAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTTGTGGCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCCAAG------GAGGAGACCCTTGAGGATGAGGAGAAGGACCCTTGTGGCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt #### Sart1_ID965_10 --> 0 - 2 Original Alignment GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGAT-GACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATCGACT-ACTGCCTCTGGGTGATCAGACTCAGGATGGG---TTTGGATCAaggtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from CESAR GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATCGACTACTGCCTCTGGGTGATCAGACTCAGGATGGG---TTTGGATCAaggtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from Spaln_aa2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATCGACTACTGCCTCTGGGTGATCAGACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from Spaln_nt2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATCGACTACTGCCTCTGGGTGATCAGACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from Pairagon GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATCGACTACTGCCTCTGGGTGATCAGACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from Exonerate_protein2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATCGACTACTGCCTCTGGGTGATCAGACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from Exonerate_coding2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATCGACTACTGCCTCTGGGTGATCAGACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from GeneWise GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATCGACTACTGCCTCTGGGTGATCAGACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAG-GCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCACGCCCAGTCTC-AAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCACGCCCAGTCTCAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCACGCCCAGTCTCAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCACGCCCAGTCTCAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Pairagon CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTG-CAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCACGCCCAGTCTC-AAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCACGCCCAGTCTCAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCACGCCCAGTCTCAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCACGCCCAGTCTCAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAG-AGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagggGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGCGGTGTGG-TGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagggGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGCGGTGTGGTGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGCGGTGTGGTGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAG-TGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGCGGTGTGG-TGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAG-AGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGCGGTGTGG-TGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGCGGTGTGGTGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGCGGTGTGGTGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGCGGTGTGGTGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAG-GACCTGGCAGAGAAGCGG gtagatcaagagcacatgtaggcttgatcagcattgcatttaatccacagtAAAGTAAAAACCCTGGGAGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGCGATC-GGCAGAGAAGAGGgtaagggcacctggcagtgtaggtccatcgccagggtgctctgtgctcag Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gtagatcaagagcacatgtaggcttgatcagcattgcatttaatccacagtAAAGTAAAAACCCTGGGAGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGCGATCGGCAGAGAAGAGGgtaagggcacctggcagtgtaggtccatcgccagggtgctctgtgctcag Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gtagatcaagagcacatgtaggcttgatcagcattgcatttaatccacagTAAAGTAAAAACCCTGGGAGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGCGATCGGCAGAGAAGAGGgtaagggcacctggcagtgtaggtccatcgccagggtgctctgtgctcag Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gtagatcaagagcacatgtaggcttgatcagcattgcatttaatccacagTAAAGTAAAAACCCTGGGAGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGCGATCGGCAGAGAAGAGGgtaagggcacctggcagtgtaggtccatcgccagggtgctctgtgctcag Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gtagatcaagagcacatgtaggcttgatcagcattgcatttaatccacagTAAAGTAAAAACCCTGGGAGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGCGATCGGCAGAGAAGAGGgtaagggcacctggcagtgtaggtccatcgccagggtgctctgtgctcag Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gtagatcaagagcacatgtaggcttgatcagcattgcatttaatccacagTAAAGTAAAAACCCTGGGAGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGCGATCGGCAGAGAAGAGGgtaagggcacctggcagtgtaggtccatcgccagggtgctctgtgctcag Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gtagatcaagagcacatgtaggcttgatcagcattgcatttaatccacagTAAAGTAAAAACCCTGGGAGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGCGATCGGCAGAGAAGAGGgtaagggcacctggcagtgtaggtccatcgccagggtgctctgtgctcag Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gtagatcaagagcacatgtaggcttgatcagcattgcatttaatccacagTAAAGTAAAAACCCTGGGAGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGCGATCGGCAGAGAAGAGGgtaagggcacctggcagtgtaggtccatcgccagggtgctctgtgctcag #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTG-AAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTGTGTTCAAGGACA-TTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from CESAR CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTGTGTTCAAGGACATTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Spaln_aa2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTGTGTTCAAGGACATTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Spaln_nt2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTG-AAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTGTGTTCAAGGACA-TTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Pairagon CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCG-TGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTGTGTTCAAGGACA-TTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Exonerate_protein2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTGTGTTCAAGGACATTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Exonerate_coding2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTGTGTTCAAGGACATTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from GeneWise CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCAGAGCATCAGTGTGTTCAAGGACATTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGT-GCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCCGAACCCCTAGTTTCCAGTCGCAACCT-ACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCCGAACCCCTAGTTTCCAGTCGCAACCTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCCGAACCCCTAGTTTCCAGTCGCAACCTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCCGAACCCCTAGTTTCCAGTCGCAACCTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCCGAACCCCTAGTTTCCAGTCGCAACCTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCCGAACCCCTAGTTTCCAGTCGCAACCTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCCGAACCCCTAGTTTCCAGTCGCAACCTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG cctgtggttgtctagatggttgccccctgcttccttgttctctcctccagCTGCCCGAGGCGTTCATGACTCCAGCACCAACTACAGCTCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCCGAACCCCTAGTTTCCAGTCGCAACCTACCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAAgtgagtgactgtcagcccctcccctgatgccacaaaaaaggtggggttac #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGA-AACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcaggaCCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGACAACC-TCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcaggaCCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGACAACCTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGACAACCTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGACAACCTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGACAACCTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGACAACCTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGACAACCTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGACAACCTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGT-AGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGTGTGCATTTCCGACTG---A-CTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGTGTGCATTT---CCGACTGACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGTGTGCATTT---CCGACTGACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGTGTGCATTT---CCGACTGACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGC--------CTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGTGTGCATTTCCGACTG-----------ACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGTGTGCATTTCCG---ACTGACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGTGTGCATTTCCG---ACTGACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taactgtgctgtacatcagcctgagggtagtctaagcctcgttctggcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAGGACCTTGTGTGTGCATTTCCGACT---GACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagcgtgacctcaacatgatccattgtactggtgccaagtggaggcaa #### Sec31b_ID9038_14 --> 2 - 0 Original Alignment acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAG-GCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagatACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGCGGTG-GGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from CESAR acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagatACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGCGGTGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Spaln_aa2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGCGGTGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Spaln_nt2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGCGGTGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Pairagon ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGCGGTGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Exonerate_protein2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGCGGTGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Exonerate_coding2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGCGGTGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from GeneWise ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaatcgagtgtgtgtgagacagccccgattatctcctttccacagATACTGATGGACTCCTGAGCCAGGCTCTGCTGCTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCCGTCATTCTGGCTCAGCGGTGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGCTATCTAGCCAAGAGGAGAACAAAAACCTCCTCAgtgagtcctgtcatccataattgggagtggggatggtctgcaagagggca #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGT-AGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGACAGGAGTT-GGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGACAGGAGTTGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGACAGGAGTTGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Spaln_nt2Genome AGGTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacAGGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGACAGGAGTTGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGG-TAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGACAGGAGTT-GGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGACAGGAGTTGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGACAGGAGTTGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGACAGGAGTTGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag #### Sema4g_ID9247_5 --> 0 - 1 Original Alignment GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAG-GAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAACGAGGAATGTC-TTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTggtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from CESAR GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAACGAGGAATGTCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTggtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from Spaln_aa2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAACGAGGAATGTCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from Spaln_nt2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAACGAGGAATGTCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from Pairagon GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAG-GAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAACGAGGAATGT-CTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from Exonerate_protein2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAACGAGGAATGTCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from Exonerate_coding2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAACGAGGAATGTCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from GeneWise GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAACGAGGAATGTCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGC-AAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagatGCAGAGTTTGTGTTCTCCGTGCTGGTACGACAGAGCCAAGACAAGCA-TGTGGGTGGTGACGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagatGCAGAGTTTGTGTTCTCCGTGCTGGTACGACAGAGCCAAGACAAGCATGTGGGTGGTGACGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCTGGTACGACAGAGCCAAGACAAGCATGTGGGTGGTGACGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGC-AAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCTGGTACGACAGAGCCAAGACAAGC-ATGTGGGTGGTGACGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAG-CAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCTGGTACGACAGAGCCAAGACAAGCAT-GTGGGTGGTGACGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCTGGTACGACAGAGCCAAGACAAGCATGTGGGTGGTGACGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCTGGTACGACAGAGCCAAGACAAGCATGTGGGTGGTGACGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcgggcttgacccgtttcataaatcagctatcaaacctttttaaaaacagATGCAGAGTTTGTGTTCTCCGTGCTGGTACGACAGAGCCAAGACAAGCATGTGGGTGGTGACGACAGGATTTATTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCCCGAGTCTGCAAGgtgagactgatgcactacaagtctggggtaatgcaaaggccagacctctg #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGC-CGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTT---AGCCCTTTTATGGAGTACCAGGATGGTGCCCGGTGTTGGGGCCTGCTATG-GGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTT---AGCCCTTTTATGGAGTACCAGGATGGTGCCCGGTGTTGGGGCCTGCTATGGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGGTGTTGGGGCCTGCTATGGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCC-GCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTA---GCCCTTTTATGGAGTACCAGGATGGTGCCCGGTGTTGGGGCCTGCTATG-GGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCC-GCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTA---GCCCTTTTATGGAGTACCAGGATGGTGCCCGGTGTTGGGGCCTGCTATG-GGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGGTGTTGGGGCCTGCTATGGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGGTGTTGGGGCCTGCTATGGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggtctggagctgggggcattcaatttactaattttgttttactctagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGGTGTTGGGGCCTGCTATGGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtgagtactccaggtctggaccttacattaattggacaaagggaaggaaa #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGC-TCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagcaGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCCTCTGGAATGC-CATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagcaGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCCTCTGGAATGCCATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCCTCTGGAATGCCATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCCTCTGGAATGCCATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGG-CTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCCTCTGGAATGC-CATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCCTCTGGAATGCCATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCCTCTGGAATGCCATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCCTCTGGAATGCCATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGC-TGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCCTGCTCACGCT-CCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACaggtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCCTGCTCACGCTCCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACaggtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCCTGCTCACGCTCCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGA---ATTCAGTTTCCTCTGTCCAGCCTGCTCACGCTCCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAG-CTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAA---TTCAGTTTCCTCTGTCCAGCCTGCTCACGCT-CCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCCTGCTCACGCTCCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCCTGCTCACGCTCCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCCTGCTCACGCTCCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag #### Sf3b2_ID898_20 --> 0 - 0 Original Alignment GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAG-AAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGCAAGGGAG-CTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from CESAR GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGCAAGGGAGCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Spaln_aa2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGCAAGGGAGCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Spaln_nt2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAG-AAGGAAGACTTCAGCGACATG---GTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGCAAGGGAG-CTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Pairagon -------------------------------------------------GGTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG TGAGGCCCCCATCTCTAGGACCTCAGAGCTGTTTCCTGTTCCTCTACTAGGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGCAAGGGAGCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Exonerate_protein2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGCAAGGGAGCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Exonerate_coding2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGCAAGGGAGCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from GeneWise GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGCAAGGGAGCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGG-ACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAACACCCCGTGGG-GGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAACACCCCGTGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAACACCCCGTGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAACACCCCGTGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGG-ACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAACACCCCGT-GGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAACACCCCGTGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAACACCCCGTGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAATCGACCAACACCCCGTGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTTGAGACACGG-CTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaagtcctgatgaagaatcggtttttctgccctatccagGGGAAGGAGTTTGAGACACGGCCTGAAGG-GAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtatttgcaggctgagtgcatggcagcgccagataggggggaaatgagta Alignment from CESAR GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaagtcctgatgaagaatcggtttttctgccctatccagGGGAAGGAGTTTGAGACACGGCCTGAAGGGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtatttgcaggctgagtgcatggcagcgccagataggggggaaatgagta Alignment from Spaln_aa2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaagtcctgatgaagaatcggtttttctgccctatccagGGGAAGGAGTTTGAGACACGGCCTGAAGGGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtatttgcaggctgagtgcatggcagcgccagataggggggaaatgagta Alignment from Spaln_nt2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaagtcctgatgaagaatcggtttttctgccctatccagGGGAAGGAGTTTGAGACACGGCCTGAAGGGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtatttgcaggctgagtgcatggcagcgccagataggggggaaatgagta Alignment from Pairagon GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaagtcctgatgaagaatcggtttttctgccctatccagGGGAAGGAGTTTGAGACACGGCCTGAAGGGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtatttgcaggctgagtgcatggcagcgccagataggggggaaatgagta Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaagtcctgatgaagaatcggtttttctgccctatccagGGGAAGGAGTTTGAGACACGGCCTGAAGGGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtatttgcaggctgagtgcatggcagcgccagataggggggaaatgagta Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaagtcctgatgaagaatcggtttttctgccctatccagGGGAAGGAGTTTGAGACACGGCCTGAAGGGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtatttgcaggctgagtgcatggcagcgccagataggggggaaatgagta Alignment from GeneWise GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gtatgtccccagaagtcctgatgaagaatcggtttttctgccctatccagGGGAAGGAGTTTGAGACACGGCCTGAAGGGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtatttgcaggctgagtgcatggcagcgccagataggggggaaatgagta #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAG-TATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGCTACGTGAGTG-GGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from CESAR AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAG---GAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAG---CTACGTGAGTGGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from Spaln_aa2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGCTACGTGAGTGGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from Spaln_nt2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAG-TATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGCTACGTGAGTG-GGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from Pairagon AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAG-TATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGCTACGTGAGTG-GGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGCTACGTGAGTGGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from Exonerate_coding2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGCTACGTGAGTGGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg Alignment from GeneWise AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aattgggggatgaggatcctctgaactatgagctttgcctttcattgcagAAAAACCGAAAGCATCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACAGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---GTAGAGATTGAGCTACGTGAGTGGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTTTGAGGCCTTTAAGgtaaggaggctcatgtctctgaggacctaccttgcttaagggggcatgcg #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAG-GACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagagAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCTAGGACCATCTGCATCAGAGACTGAGGAGCGACA-AGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagagAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCTAGGACCATCTGCATCAGAGACTGAGGAGCGACAAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aagcttttacagttaggagaggtcactcattttctctttctgccca gAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCTAGGACCATCTGCATCAGAGACTGAGGAGCGACAAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCTAGGACCATCTGCATCAGAGACTGAGGAGCGACAAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from Pairagon AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAG-GACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCTAGGACCATCTGCATCAGAGACTGAGGAGCGACA-AGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCTAGGACCATCTGCATCAGAGACTGAGGAGCGACAAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from Exonerate_coding2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCTAGGACCATCTGCATCAGAGACTGAGGAGCGACAAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from GeneWise AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCTAGGACCATCTGCATCAGAGACTGAGGAGCGACAAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAG-GCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAA-GATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAG---ggtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAG---ggtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAG---Ggtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttgagtttcagccccttcctctgttctttccttacagAT---TGACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttgagtttcagccccttcctctgttctttccttacagAT---TGACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGC gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGC gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG- gaggatggcatttttgagtttcagccccttcctctgttctttccttacagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGCGCTTTGGAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAGGgtgagcgagattgaacattgccttgatactgcaacagcacataagctggg #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagggAGTCGTGAGGAATTAGTACGAGAGGC-GCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagggAGTCGTGAGGAATTAGTACGAGAGGCGCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagGGAGTCGTGAGGAATTAGTACGAGAGGCGCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagGGAGTCGTGAGGAATTAGTACGAGAGGC-GCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagGGAGTCGTGAGGAATTAGTACGAGAGGC-GCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagGGAGTCGTGAGGAATTAGTACGAGAGGCGCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from Exonerate_coding2genome agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagggagtcgtgaggaattagtacgagaggcgcagacctatacccgtcaggtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from GeneWise GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagGGAGTCGTGAGGAATTAGTACGAGAGGCGCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATC-ACCATGGCAGCCCCT---GGCATGa cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCATCACACAAGTGGTTATCTCTCGAATCCTCAATGGCAG-CCCTGCTGGCATGagtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from CESAR AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCATCACACAAGTGGTTATCTCTCGAATCCTCAATGGCAGCCCTGCTGGCATGagtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCATCACACAAGTGGTTATCTCTCGAATCCTCAATGGCAGCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCA-TGGCAGCCC--CTGGCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCATCACACAAGTGGTTATCTCTCGAATCCTCAATGGCAGCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from Pairagon AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACC-ATGGCAGCCC--CTGGCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCATCACACAAGTGGTTATCTCTCGAATCCTCAATGGCAGCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCATCACACAAGTGGTTATCTCTCGAATCCTCAATGGCAGCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from Exonerate_coding2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCATCACACAAGTGGTTATCTCTCGAATCCTCAATGGCAGCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca Alignment from GeneWise AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaagcatgatccctggctttcctctccctttcgttccagAGAGCAGCAACCGTGGGCATCACACAAGTGGTTATCTCTCGAATCCTCAATGGCAGCCCTGCTGGCATGAgtgagtttgattgaaaacacttcatacagatccttgaatacctagtcgca #### Sfxn3_ID9291_9 --> 1 - 2 Original Alignment cTTGGTATTTGCCACACCCCTGTGC-TGCGCTCTGTTCCCTCAGAGAag actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagcTTGGTATTTGCCACCCCCCTGTGTCTGTGCCT-GTTCCCTCAGAGAgcgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from CESAR cTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAag actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagcTTGGTATTTGCCACCCCCCTGTGTCTGTGCCTGTTCCCTCAGAGAgcgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from Spaln_aa2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTCTGTGCCTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from Spaln_nt2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTCTGTGCCTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from Pairagon CTTGGTATTTGCCACACCCCTGTG-CTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTCTGTGC-CTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from Exonerate_protein2genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTCTGTGCCTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from Exonerate_coding2genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTCTGTGCCTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from GeneWise CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTCTGTGCCTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAG-TCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGCTCCATGCTCT-GAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGCTCCATGCTCTGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGCTCCATGCTCTGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAG-TCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCC---ACCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGCTCCATGCTCT-GAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAG-TCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCC---ACCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGCTCCATGCTCT-GAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGCTCCATGCTCTGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Exonerate_coding2genome cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggccacctgggagcctatcagaaaagatctctcatctagagctccatgctctgaaattgcaagaggactcgcagagggtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGCTCCATGCTCTGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment gaCAACCCATCTCAGAGAGCGGAGACCCC-AAGGAAGCTTTAAAGTGTGATTCTga gtctgccagttggatgttagctccctcatgtttctgtttctgtcttacagggCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAAG-TTCAAAGTGTGATTCTgagtaagtctcctcatatacccacccttgtgattatgttgcctgatttcctg Alignment from CESAR gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga gactgccagttggatgttagctccctcatgtttctgtttctgtcttacagggCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAAGTTCAAAGTGTGATTCTgagtaagtctcctcatatacccacccttgtgattatgttgcctgatttcctg Alignment from Spaln_aa2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gtctgccagttggatgttagctccctcatgtttctgtttctgtcttacagGGCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAAGTTCAAAGTGTGATTCTGAgtaagtctcctcatatacccacccttgtgattatgttgcctgatttcctg Alignment from Spaln_nt2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gtctgccagttggatgttagctccctcatgtttctgtttctgtcttacagGGCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAAGTTCAAAGTGTGATTCTGAgtaagtctcctcatatacccacccttgtgattatgttgcctgatttcctg Alignment from Pairagon GACAACCCATCTCAGAGAGCGGAGA-CCCCAAGGAAGCTTTAAAGTGTGATTCTGA gtctgccagttggatgttagctccctcatgtttctgtttctgtcttacagGGCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAAG-TTCAAAGTGTGATTCTGAgtaagtctcctcatatacccacccttgtgattatgttgcctgatttcctg Alignment from Exonerate_protein2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gtctgccagttggatgttagctccctcatgtttctgtttctgtcttacagGGCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAAGTTCAAAGTGTGATTCTGAgtaagtctcctcatatacccacccttgtgattatgttgcctgatttcctg Alignment from Exonerate_coding2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gtctgccagttggatgttagctccctcatgtttctgtttctgtcttacagGGCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAAGTTCAAAGTGTGATTCTGAgtaagtctcctcatatacccacccttgtgattatgttgcctgatttcctg Alignment from GeneWise -------------------------------------------------GGACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GTCTGCCAGTTGGATGTTAGCTCCCTCATGTTTCTGTTTCTGTCTTACAGGGCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAAGTTCAAAGTGTGATTCTGAgtaagtctcctcatatacccacccttgtgattatgttgcctgatttcctg #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACA-ATTCTGGAGTCACTGTCCCGGGAGg ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttATGCCAGAAGCTGGTACTGAGACCTTGGAT---GAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACACATTT-GGAGTCACTGTCACGGGAAggtgagactgccagttggatgttagctccctcaagcaatctgcaactttta Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttATGCCAGAAGCTGGTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACACATTTGGAGTCACTGTCACGGGAAggtgagactgccagttggatgttagctccctcatgtttctgtttctgtctt Alignment from Spaln_aa2Genome ATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttatgccagaagctggtactgagaccttggatgaatggcagtccatctcagagATCACCTCCACTTGCAACACACATTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcaagcaatctgcaactttta Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTT---GGATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACACATTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcaagcaatctgcaactttta Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTT---GGATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACACATTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcaagcaatctgcaactttta Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACACATTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcaagcaatctgcaactttta Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACACATTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcaagcaatctgcaactttta Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAG--------------------------------------------------- ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACACATTTGGAGTCACTGTCACGGGAAGGTGAGACTGCCAGTTGGATGTTAGCTCCCTCAAGCAATCTGCAACTTTTA #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCC-TCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaagttaacattggatgccatattatcagtgcacgtttctttccgtagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAATTGAAGGCCCTCCATCCTGC-CAGGACTCTGTCGCTACGGAATTCCATCAGTAAGagtgagctggggaaacagggcagagggagaagactgtccctagcccctgtg Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaagttaacattggatgccatattatcagtgcacgtttctttccgtagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAATTGAAGGCCCTCCATCCTGCCAGGACTCTGTCGCTACGGAATTCCATCAGTAAGagtgagctggggaaacagggcagagggagaagactgtccctagcccctgtg Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatcagtgcacgtttctttccgtagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAATTGAAGGCCCTCCATCCTGCCAGGACTCTGTCGCTACGGAATTCCATCAGTAAGAgtgagctggggaaacagggcagagggagaagactgtccctagcccctgtg Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCC-TCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatcagtgcacgtttctttccgtagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAATTGAAGGCCCTCCATCCTG-CCAGGACTCTGTCGCTACGGAATTCCATCAGTAAGAgtgagctggggaaacagggcagagggagaagactgtccctagcccctgtg Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGG-CCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatcagtgcacgtttctttccgtagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAATTGAAGGCCCTCCATCCTG-CCAGGACTCTGTCGCTACGGAATTCCATCAGTAAGAgtgagctggggaaacagggcagagggagaagactgtccctagcccctgtg Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatcagtgcacgtttctttccgtagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAATTGAAGGCCCTCCATCCTGCCAGGACTCTGTCGCTACGGAATTCCATCAGTAAGAgtgagctggggaaacagggcagagggagaagactgtccctagcccctgtg Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatcagtgcacgtttctttccgtagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAATTGAAGGCCCTCCATCCTGCCAGGACTCTGTCGCTACGGAATTCCATCAGTAAGAgtgagctggggaaacagggcagagggagaagactgtccctagcccctgtg Alignment from GeneWise GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatcagtgcacgtttctttccgtagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAATTGAAGGCCCTCCATCCTGCCAGGACTCTGTCGCTACGGAATTCCATCAGTAAGAgtgagctggggaaacagggcagagggagaagactgtccctagcccctgtg #### Slc15a3_ID3029_4 --> 0 - 0 Original Alignment ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCA-GATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCACGATA-CAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from CESAR ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCACGATACAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Spaln_aa2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCACGATACAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Spaln_nt2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCACGATACAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Pairagon ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCA-GATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCACGATA-CAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Exonerate_protein2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCACGATACAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Exonerate_coding2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCACGATACAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from GeneWise ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCACGATACAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGC-AGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagtgTTTGCATTTTCTAGTCAGTTATGCCT-TCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTggtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagtgTTTGCATTTTCTAGTCAGTTATGCCTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTggtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTCAGTTATGCCTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAG-CAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTCAGTTATGCCTT-CTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Pairagon TGTTTGCCTTCTCCAG-CAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTCAGTTATGCCTT-CTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTCAGTTATGCCTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTCAGTTATGCCTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTCAGTTATGCCTTCTGCTGATTGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTGCTCCAGCCA-TCCCGAGTGCAGCCAGAA ccagtattgtgtactgccaggcatgggaactccctcttgtgcttttacagctATTCAGCTCTTTGTAATTCAA---CTCCT-TGTACTACCAGACgtgggtagctggtagtggggataagggccaacaatgggtaagtttctctt Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtattgtgtactgccaggcatgggaactccctcttgtgcttttacagctATTCAGCTCTTTGTAATTCAACTCCTT---GTACTACCAGACgtgggtagctggtagtggggataagggccaacaatgggtaagtttctgta Alignment from Spaln_aa2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtattgtgtactgccaggcatgggaactccctcttgtgcttttacagCTATTCAGCTCTTTGTAATTCAACTCCTT---GTACTACCAGACgtgggtagctggtagtggggataagggccaacaatgggtaagtttctctt Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtattgtgtactgccaggcatgggaactccctcttgtgcttttacagCTATTCAGCTCTTTGTAATTCA---ACTCCTTGTACTACCAGACgtgggtagctggtagtggggataagggccaacaatgggtaagtttctctt Alignment from Pairagon CTATTCAGCTCTTT ccagtattgtgtactgccaggcatgggaactccctcttgtgcttttacagCTATTCAGCTCTTTgtaattcaactccttgtactaccagacgtgggtagctggtagtggggataagggccaacaatgggtaagtttctctt Alignment from Exonerate_protein2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtattgtgtactgccaggcatgggaactccctcttgtgcttttacagCTATTCAGCTCTTTGTAATTCAA---CTCCTTGTACTACCAGACgtgggtagctggtagtggggataagggccaacaatgggtaagtttctctt Alignment from Exonerate_coding2genome ccagtattgtgtactgccaggcatgggaactccctcttgtgcttttacagctattcagctctttgtaattcaactccttgtactaccagacgtgggtagctggtagtggggataagggccaacaatgggtaagtttctctt Alignment from GeneWise ccagtattgtgtactgccaggcatgggaactccctcttgtgcttttacagctattcagctctttgtaattcaactccttgtactaccagacgtgggtagctggtagtggggataagggccaacaatgggtaagtttctctt #### Slc18a2_ID12944_11 --> 1 - 0 Original Alignment gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTT-GGGATCAGCATTTTATGT caaacacatggagcaagtattcactcacctaacaacactcttgcccccagaTGGCTGTGTGCTCTTCTGGGAATGATAGTAGTACGGCA-CAGCATTTTATGCgtaggtcaggatggctagagacaggaggcagtttccttggttccgaatgt Alignment from CESAR gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT caaacacatggagcaagtattcactcacctaacaacactcttgcccccagaTGGCTGTGTGCTCTTCTGGGAATGATAGTAGTACGGCACAGCATTTTATGCgtaggtcaggatggctagagacaggaggcagtttccttggttccgaatgt Alignment from Spaln_aa2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT caaacacatggagcaagtattcactcacctaacaacactcttgcccccagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTACGGCACAGCATTTTATGCgtaggtcaggatggctagagacaggaggcagtttccttggttccgaatgt Alignment from Spaln_nt2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT caaacacatggagcaagtattcactcacctaacaacactcttgcccccagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTACGGCACAGCATTTTATGCgtaggtcaggatggctagagacaggaggcagtttccttggttccgaatgt Alignment from Pairagon GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT caaacacatggagcaagtattcactcacctaacaacactcttgcccccagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTACGGCACAGCATTTTATGCgtaggtcaggatggctagagacaggaggcagtttccttggttccgaatgt Alignment from Exonerate_protein2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT caaacacatggagcaagtattcactcacctaacaacactcttgcccccagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTACGGCACAGCATTTTATGCgtaggtcaggatggctagagacaggaggcagtttccttggttccgaatgt Alignment from Exonerate_coding2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT caaacacatggagcaagtattcactcacctaacaacactcttgcccccagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTACGGCACAGCATTTTATGCgtaggtcaggatggctagagacaggaggcagtttccttggttccgaatgt Alignment from GeneWise GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT caaacacatggagcaagtattcactcacctaacaacactcttgcccccagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTACGGCACAGCATTTTATGCgtaggtcaggatggctagagacaggaggcagtttccttggttccgaatgt #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACC-ATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagcgATGGGGGTCCTTCGCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCCATTTTCTCTA-TGAGCTCTTCCCCACTGTCATCaggtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagcgATGGGGGTCCTTCGCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCCATTTTCTCTATGAGCTCTTCCCCACTGTCATCaggtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCCATTTTCTCTATGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCCATTTTCTCTATGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCA-CCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCCATTTTCTCTA-TGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCCATTTTCTCTATGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCCATTTTCTCTATGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgaagggaatgccacacccctcactgaacctctgtcttatcttcacagCGATGGGGGTCCTTCGCTCGGCTCTGGCTGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCCATTTTCTCTATGAGCTCTTCCCCACTGTCATCAGgtatgtgtcattagcccaaggatcacacctccagattagaaatgggcacc #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATC-AGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcaggTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCCACCCGTTTGG-CCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATggtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcaggTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCCACCCGTTTGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATggtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCCACCCGTTTGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGA---------CCTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCCACCCGTTTGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGA---------CCTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCCACCCGTTTGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCCACCCGTTTGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Exonerate_coding2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCCACCCGTTTGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGACCTT---------GGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAGGCAGCTTGCTCTTGATCCACCCGTTTGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAA-GCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGCGCTGGTG-CAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGCGCTGGTGCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGCGCTGGTGCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGCGCTGGTGCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGA-CAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGCGCTGGTG-CAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGCGCTGGTGCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Exonerate_coding2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGCGCTGGTGCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGCGCTGGTGCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCA-GCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccaggTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTCGCTG-TTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCtgtaggtcccattactagtgcgaggttgtaaaggctactgctaactgcttc Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccaggTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTCGCTGTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCtgtaggtcccattactagtgcgaggttgtaaaggctactgctaagtttcat Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTCGCTGTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctaactgcttc Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTCGCTGTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctaactgcttc Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGC-AGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTCGCTG-TTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctaactgcttc Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTCGCTGTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctaactgcttc Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTCGCTGTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctaactgcttc Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT cacacagagcttttgttgctccccagtgctcacatgtgtccttcctccagGTTTGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGTCACAGCTCGCTGTTTCATGCCCACCTTCCCACTGCATTGTCTGTTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCTgtaggtcccattactagtgcgaggttgtaaaggctactgctaactgcttc #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGA-GCCGCCTTGTTTGGTGGTCTTGCTGACag gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGACGCTGCCT-GTTCGGTTGTCTAGCAGACaggtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGACGCTGCCTGTTCGGTTGTCTAGCAGACaggtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGACGCTGCCTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGACGCTGCCTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGACGCTGCCTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGACGCTGCCTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGACGCTGCCTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGACGCTGCCTGTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCC-CGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtaggTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCTGTA-CAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtaggTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCTGTACAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCTGTACAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCTGTACAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCTGTACAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCTGTACAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCTGTACAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCTGTACAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTC-TACACAAGTGAGCTCTACCCTACAGTCCTCag cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagagATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTTCAGCTGCCTCTTCTTCCTACACAA-TGAGCTCTACCCTACAGTCCTCaggtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagagATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTTCAGCTGCCTCTTCTTCCTACACAATGAGCTCTACCCTACAGTCCTCaggtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTTCAGCTGCCTCTTCTTCCTACACAATGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTTCAGCTGCCTCTTCTTCCTACACAATGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCT-CTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTTCAGCTGCCTCTTCTTCCTACACAA-TGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTTCAGCTGCCTCTTCTTCCTACACAATGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTTCAGCTGCCTCTTCTTCCTACACAATGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG cgtcacctagcaaatttacatgcagaggtcctgttttttttttttttcagAGATGGAGATTGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCCTGTCCGGCTCCTTCAGCTGCCTCTTCTTCCTACACAATGAGCTCTACCCTACAGTCCTCAGgtaagcggtgcacctgggtcaggagtccatctaaagaactgaattttcaa #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTG-GGGCACCCATTCGACACTGTAAAG tggacgtgttacttggacttggcatcttaattctttctgatttgttttaggaGCTGTGGGCCTGGTCCTGCGGGCACC-ATTTGACACTGTAAAGgtaagggataaacatgctgggatgagagccagtcttgcaaaatttgggta Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacgtgttacttggacttggcatcttaattctttctgatttgttttaggaGCTGTGGGCCTGGTCCTGCGGGCACCATTTGACACTGTAAAGgtaagggataaacatgctgggatgagagccagtcttgcaaaatttgggta Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacgtgttacttggacttggcatcttaattctttctgatttgttttagGAGCTGTGGGCCTGGTCCTGCGGGCACCATTTGACACTGTAAAGgtaagggataaacatgctgggatgagagccagtcttgcaaaatttgggta Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacgtgttacttggacttggcatcttaattctttctgatttgttttagGAGCTGTGGGCCTGGTCCTGCGGGCACCATTTGACACTGTAAAGgtaagggataaacatgctgggatgagagccagtcttgcaaaatttgggta Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacgtgttacttggacttggcatcttaattctttctgatttgttttagGAGCTGTGGGCCTGGTCCTGCGGGCACCATTTGACACTGTAAAGgtaagggataaacatgctgggatgagagccagtcttgcaaaatttgggta Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacgtgttacttggacttggcatcttaattctttctgatttgttttagGAGCTGTGGGCCTGGTCCTGCGGGCACCATTTGACACTGTAAAGgtaagggataaacatgctgggatgagagccagtcttgcaaaatttgggta Alignment from Exonerate_coding2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacgtgttacttggacttggcatcttaattctttctgatttgttttagGAGCTGTGGGCCTGGTCCTGCGGGCACCATTTGACACTGTAAAGgtaagggataaacatgctgggatgagagccagtcttgcaaaatttgggta Alignment from GeneWise tggacgtgttacttggacttggcatcttaattctttctgatttgttttaggagctgtgggcctggtcctgcgggcaccatttgacactgtaaaggtaagggataaacatgctgggatgagagccagtcttgcaaaatttgggta #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATA-GCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCGAGCCACACAAACATCTTTATACGCAGGTTGTA-CGGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATA-GCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCGAGCCACACAAACATCTTTATACGCAGGTTGTACGG-GGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCGAGCCACACAAACATCTTTATACGCAGGTTGTACGGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATA-GCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCGAGCCACACAAACATCTTTATACGCAGGTTGTAC-GGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATA-GCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCGAGCCACACAAACATCTTTATACGCAGGTTGTAC-GGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCGAGCCACACAAACATCTTTATACGCAGGTTGTACGGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from Exonerate_coding2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCGAGCCACACAAACATCTTTATACGCAGGTTGTACGGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttcggacacaaaggtttgtgtttatttctcccagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACATCTCATCAGGAGCGCCAGGCCCAGCCCCCGAGCCACACAAACATCTTTATACGCAGGTTGTACGGGGGCCTCCGTCAGgtatgcgtatcattgttgctggataattgaaatacttttagttcattgaa #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGT-TACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTCTACCTCA-CCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTCTACCTCACCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTCTACCTCACCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGT-TACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTCTACCTCA-CCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGT-TACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTCTACCTCA-CCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTCTACCTCACCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTCTACCTCACCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTCTACCTCACCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCC-AGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCCAGCATCTTTC-CATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCCAGCATCTTTCCATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from Spaln_aa2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCCAGCATCTTTCCATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCCAGCATCTTTCCATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGT-CCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCCAGCATCTTTC-CATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCCAGCATCTTTCCATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCCAGCATCTTTCCATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAGTCCCAGCATCTTTCCATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCAGACTTTATA-CCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCCAGACCATC-TCTCCGACTCTACCAGCTGCTGCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCCAGACCATCTCTCCGACTCTACCAGCTGCTGCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCCAGACCATCTCTCCGACTCTACCAGCTGCTGCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCCAGACCATCTCTCCGACTCTACCAGCTGCTGCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCAGACTTTATA-CCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCCAGACCATC-TCTCCGACTCTACCAGCTGCTGCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCCAGACCATCTCTCCGACTCTACCAGCTGCTGCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCCAGACCATCTCTCCGACTCTACCAGCTGCTGCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca Alignment from GeneWise GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG ggaagtgtaggtaggagggggcaggtgttttcctcactctccgcttccagGTGTCACAGGCAGGACTTCTTGCAGACTTTATACCCAGACCATCTCTCCGACTCTACCAGCTGCTGCTCTTTACCCTTCCAGGGACTCCTGTTTTCAGCTATGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtgaggactcacttactgtgttgcatggaaataatgtatatgttatggca #### Slc3a2_ID2302_7 --> 1 - 0 Original Alignment gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGC-TCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtaccgttgtattctttttctctttcccccaagaCTTTTGATTGCAGGGACTGAATCCTCTGACCTGCAGCAGATTCTCAATATACTTGAGTCTACCAGTGACCTGCTGTTGACTAGCCTCCTACC-TTCAAATTCTACATACACTGGGGAACGCACGGAATCTTTAGTAACTAGTTTTTTGAATGCAACTGGCAGTCAATGGTGCAGCTGGAGTgtaagtggcatgatggtcggcctagacctggaagtgtaggtaggaggggg Alignment from CESAR gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtaccgttgtattctttttctctttcccccaagaCTTTTGATTGCAGGGACTGAATCCTCTGACCTGCAGCAGATTCTCAATATACTTGAGTCTACCAGTGACCTGCTGTTGACTAGCCTCCTACCTTCAAATTCTACATACACTGGGGAACGCACGGAATCTTTAGTAACTAGTTTTTTGAATGCAACTGGCAGTCAATGGTGCAGCTGGAGTgtaagtggcatgatggtcggcctagacctggaagtgtaggtaggaggggg Alignment from Spaln_aa2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtaccgttgtattctttttctctttcccccaagACTTTTGATTGCAGGGACTGAATCCTCTGACCTGCAGCAGATTCTCAATATACTTGAGTCTACCAGTGACCTGCTGTTGACTAGCCTCCTACCTTCAAATTCTACATACACTGGGGAACGCACGGAATCTTTAGTAACTAGTTTTTTGAATGCAACTGGCAGTCAATGGTGCAGCTGGAGTgtaagtggcatgatggtcggcctagacctggaagtgtaggtaggaggggg Alignment from Spaln_nt2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGC-TCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtaccgttgtattctttttctctttcccccaagACTTTTGATTGCAGGGACTGAATCCTCTGACCTGCAGCAGATTCTCAATATACTTGAGTCTACCAGTGACCTGCTGTTGACTAGCCTCCTACCT-TCAAATTCTACATACACTGGGGAACGCACGGAATCTTTAGTAACTAGTTTTTTGAATGCAACTGGCAGTCAATGGTGCAGCTGGAGTgtaagtggcatgatggtcggcctagacctggaagtgtaggtaggaggggg Alignment from Pairagon GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAG-CTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtaccgttgtattctttttctctttcccccaagACTTTTGATTGCAGGGACTGAATCCTCTGACCTGCAGCAGATTCTCAATATACTTGAGTCTACCAGTGACCTGCTGTTGACTAGCCTCCTACCT-TCAAATTCTACATACACTGGGGAACGCACGGAATCTTTAGTAACTAGTTTTTTGAATGCAACTGGCAGTCAATGGTGCAGCTGGAGTgtaagtggcatgatggtcggcctagacctggaagtgtaggtaggaggggg Alignment from Exonerate_protein2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtaccgttgtattctttttctctttcccccaagACTTTTGATTGCAGGGACTGAATCCTCTGACCTGCAGCAGATTCTCAATATACTTGAGTCTACCAGTGACCTGCTGTTGACTAGCCTCCTACCTTCAAATTCTACATACACTGGGGAACGCACGGAATCTTTAGTAACTAGTTTTTTGAATGCAACTGGCAGTCAATGGTGCAGCTGGAGTgtaagtggcatgatggtcggcctagacctggaagtgtaggtaggaggggg Alignment from Exonerate_coding2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtaccgttgtattctttttctctttcccccaagACTTTTGATTGCAGGGACTGAATCCTCTGACCTGCAGCAGATTCTCAATATACTTGAGTCTACCAGTGACCTGCTGTTGACTAGCCTCCTACCTTCAAATTCTACATACACTGGGGAACGCACGGAATCTTTAGTAACTAGTTTTTTGAATGCAACTGGCAGTCAATGGTGCAGCTGGAGTgtaagtggcatgatggtcggcctagacctggaagtgtaggtaggaggggg Alignment from GeneWise GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttattcctcactttgtaccgttgtattctttttctctttcccccaagACTTTTGATTGCAGGGACTGAATCCTCTGACCTGCAGCAGATTCTCAATATACTTGAGTCTACCAGTGACCTGCTGTTGACTAGCCTCCTACCTTCAAATTCTACATACACTGGGGAACGCACGGAATCTTTAGTAACTAGTTTTTTGAATGCAACTGGCAGTCAATGGTGCAGCTGGAGTgtaagtggcatgatggtcggcctagacctggaagtgtaggtaggaggggg #### Slk_ID10264_16 --> 0 - 0 Original Alignment GAAACAGAACAA-ATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagcaatctataaggaaagttagtatatcaattaacattgttggagGAAACAGAGCAACATGCAGC-CTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGGCCAAAATTCAAAGAAGTGAAGCGAAAACACGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtaagtaacagttcaatttctttgccaggatttaagacttcagtagaacc Alignment from CESAR GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagcaatctataaggaaagttagtatatcaattaacattgttggagGAAACAGAGCAACATGCAGCCTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGGCCAAAATTCAAAGAAGTGAAGCGAAAACACGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtaagtaacagttcaatttctttgccaggatttaagacttcagtagaacc Alignment from Spaln_aa2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagcaatctataaggaaagttagtatatcaattaacattgttggagGAAACAGAGCAACATGCAGCCTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGGCCAAAATTCAAAGAAGTGAAGCGAAAACACGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtaagtaacagttcaatttctttgccaggatttaagacttcagtagaacc Alignment from Spaln_nt2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagcaatctataaggaaagttagtatatcaattaacattgttggagGAAACAGAGCAACATGCAGCCTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGGCCAAAATTCAAAGAAGTGAAGCGAAAACACGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtaagtaacagttcaatttctttgccaggatttaagacttcagtagaacc Alignment from Pairagon GAAACAGAACAA-ATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagcaatctataaggaaagttagtatatcaattaacattgttggagGAAACAGAGCAACATGCAGC-CTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGGCCAAAATTCAAAGAAGTGAAGCGAAAACACGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtaagtaacagttcaatttctttgccaggatttaagacttcagtagaacc Alignment from Exonerate_protein2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagcaatctataaggaaagttagtatatcaattaacattgttggagGAAACAGAGCAACATGCAGCCTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGGCCAAAATTCAAAGAAGTGAAGCGAAAACACGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtaagtaacagttcaatttctttgccaggatttaagacttcagtagaacc Alignment from Exonerate_coding2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagcaatctataaggaaagttagtatatcaattaacattgttggagGAAACAGAGCAACATGCAGCCTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGGCCAAAATTCAAAGAAGTGAAGCGAAAACACGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtaagtaacagttcaatttctttgccaggatttaagacttcagtagaacc Alignment from GeneWise GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagcaatctataaggaaagttagtatatcaattaacattgttggagGAAACAGAGCAACATGCAGCCTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGGCCAAAATTCAAAGAAGTGAAGCGAAAACACGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtaagtaacagttcaatttctttgccaggatttaagacttcagtagaacc #### Smc3_ID11328_16 --> 0 - 2 Original Alignment GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGA-AAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACag gacttgctgcttgtgttcattagatcttttctctctctttcactgtgcagGCCATTTTAAAAGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGACAAAGGTATAA-CCAGCATGTTCAAAATGGCTACTATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACTGCTGGTAACaggtgagctcggggttgggtggaactttagggggtaggggttgtgcctcatt Alignment from CESAR GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACag gacttgctgcttgtgttcattagatcttttctctctctttcactgtgcagGCCATTTTAAAAGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGACAAAGGTATAACCAGCATGTTCAAAATGGCTACTATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACTGCTGGTAACaggtgagctcggggttgggtggaactttagggggtaggggttgtgcctcatt Alignment from Spaln_aa2Genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtgttcattagatcttttctctctctttcactgtgcagGCCATTTTAAAAGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGACAAAGGTATAACCAGCATGTTCAAAATGGCTACTATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtgagctcggggttgggtggaactttagggggtaggggttgtgcctcatt Alignment from Spaln_nt2Genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtgttcattagatcttttctctctctttcactgtgcagGCCATTTTAAAAGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGACAAAGGTATAACCAGCATGTTCAAAATGGCTACTATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtgagctcggggttgggtggaactttagggggtaggggttgtgcctcatt Alignment from Pairagon GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGA-AAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtgttcattagatcttttctctctctttcactgtgcagGCCATTTTAAAAGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGACAAAGGTAT-AACCAGCATGTTCAAAATGGCTACTATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtgagctcggggttgggtggaactttagggggtaggggttgtgcctcatt Alignment from Exonerate_protein2genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtgttcattagatcttttctctctctttcactgtgcagGCCATTTTAAAAGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGACAAAGGTATAACCAGCATGTTCAAAATGGCTACTATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtgagctcggggttgggtggaactttagggggtaggggttgtgcctcatt Alignment from Exonerate_coding2genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtgttcattagatcttttctctctctttcactgtgcagGCCATTTTAAAAGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGACAAAGGTATAACCAGCATGTTCAAAATGGCTACTATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtgagctcggggttgggtggaactttagggggtaggggttgtgcctcatt Alignment from GeneWise GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtgttcattagatcttttctctctctttcactgtgcagGCCATTTTAAAAGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGACAAAGGTATAACCAGCATGTTCAAAATGGCTACTATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtgagctcggggttgggtggaactttagggggtaggggttgtgcctcatt #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATC-CCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcaggaCGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCTTCACAGTGCCTATCCCCTGCCC-CAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcaggaCGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCTTCACAGTGCCTATCCCCTGCCCCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCTTCACAGTGCCTATCCCCTGCCCCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCTTCACAGTGCCTATCCCCTGCCCCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCTTCACAGTGCCTATCCCCTGCCCCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCTTCACAGTGCCTATCCCCTGCCCCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCTTCACAGTGCCTATCCCCTGCCCCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacactgacatctgctggtgttggcagGACGATTTGAAGCCTCTGTTATCGAGGAGCGTCGGAAGGGTGCAGATGACCTGCTGCGCTTCACAGTGCCTATCCCCTGCCCCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacaagggcccctcttaatcaaatccacctgcctc #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCTATCTCTGCT-GCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacaggcCTGGCAGACAACTATATTCCCATTTCAGCTCGCACTGA-CAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGaggtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from CESAR gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacaggcCTGGCAGACAACTATATTCCCATTTCAGCTCGCACTGACAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGaggtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCATTTCAGCTCGCACTGACAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCATTTCAGCTCGCACTGACAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from Pairagon GCCTGGCAGACAACTATATCCCTATCTCTGCT-GCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCATTTCAGCTCGCACTGA-CAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCATTTCAGCTCGCACTGACAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCATTTCAGCTCGCACTGACAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt Alignment from GeneWise GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcgcacattcatccaattaagactgcccgttctgtttctgtataaaacagGCCTGGCAGACAACTATATTCCCATTTCAGCTCGCACTGACAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtaagtgtcatgctattgctgcattcacctcactcttgcaccattactgt #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGC-ATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCCATTGTAAGGT-TGCAGACGAAATCCTCATCACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCCATTGTAAGGTTGCAGACGAAATCCTCATCACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCCATTGTAAGGTTGCAGACGAAATCCTCATCACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCCATTGTAAGGTTGCAGACGAAATCCTCATCACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAG-CATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCCATTGTAAGGT-TGCAGACGAAATCCTCATCACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCCATTGTAAGGTTGCAGACGAAATCCTCATCACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCCATTGTAAGGTTGCAGACGAAATCCTCATCACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacaccattgagagtacccaagtgtcttgactcttttcttccttccagCTGAGTGTCCGGGAAAAGAACAGGAAGGAAGTATCAGGGGGGCTCCTGAGAAGCCATTGTAAGGTTGCAGACGAAATCCTCATCACCGGTGGCATATCGGGGCTCAAGgtaatgattatcctttttgtggcaggggacccatgaacacgccaggcacc #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTT-GAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTCGAGGCTT-AAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAgcgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTCGAGGCTTAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAgcgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTCGAGGCTTAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTCGAGGCTTAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from Pairagon ATTCCCCCAGCCCCTCCCAGGCCAGACTTT-GAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTCGAGGCTT-AAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTCGAGGCTTAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTCGAGGCTTAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTCGAGGCTTAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag #### Snx32_ID1075_3 --> 0 - 0 Original Alignment AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATC-TGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggtagctttgggtaagaagggatcgctggaactctgcctaccccacagAGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCCGCCAGCATGAAGAGTTCATCCTGGCTGC-TGACACCTATGTAGAAAATGAAGAGTATGAATACACTAGCCTCGTTgtttgtagtagtagggcagagttggagtgttaagaatgtacataagggtg Alignment from CESAR AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAG------TACGCCGGCCTCATC aaggtagctttgggtaagaagggatcgctggaactctgcctaccccacagAGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCCGCCAGCATGAAGAGTTCATCCTGGCTGCTGACACCTATGTAGAAAATGAAGAGTATGAATACACTAGCCTCGTTgtttgtagtagtagggcagagttggagtgttaagaatgtacataagggtg Alignment from Spaln_aa2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggtagctttgggtaagaagggatcgctggaactctgcctaccccacagAGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCCGCCAGCATGAAGAGTTCATCCTGGCTGCTGACACCTATGTAGAAAATGAAGAGTATGAATACACTAGCCTCGTTgtttgtagtagtagggcagagttggagtgttaagaatgtacataagggtg Alignment from Spaln_nt2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACG------CCGGCCTCATC aaggtagctttgggtaagaagggatcgctggaactctgcctaccccacagAGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCCGCCAGCATGAAGAGTTCATCCTGGCTGCTGACACCTATGTAGAAAATGAAGAGTATGAATACACTAGCCTCGTTgtttgtagtagtagggcagagttggagtgttaagaatgtacataagggtg Alignment from Pairagon AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCAT-CTGGCTACATGACACCTATGTGGAAAACGAAGA aaggtagctttgggtaagaagggatcgctggaactctgcctaccccacagAGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCCGCCAGCATGAAGAGTTCATCCTGGCTGC-TGACACCTATGTAGAAAATGAAGAgtatgaatacactagcctcgttgtttgtagtagtagggcagagttggagtgttaagaatgtacataagggtg Alignment from Exonerate_protein2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGA aaggtagctttgggtaagaagggatcgctggaactctgcctaccccacagAGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCCGCCAGCATGAAGAGTTCATCCTGGCTGCTGACACCTATGTAGAAAATGAAGAgtatgaatacactagcctcgttgtttgtagtagtagggcagagttggagtgttaagaatgtacataagggtg Alignment from Exonerate_coding2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGA aaggtagctttgggtaagaagggatcgctggaactctgcctaccccacagAGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCCGCCAGCATGAAGAGTTCATCCTGGCTGCTGACACCTATGTAGAAAATGAAGAgtatgaatacactagcctcgttgtttgtagtagtagggcagagttggagtgttaagaatgtacataagggtg Alignment from GeneWise AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggtagctttgggtaagaagggatcgctggaactctgcctaccccacagAGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCCGCCAGCATGAAGAGTTCATCCTGGCTGCTGACACCTATGTAGAAAATGAAGAGTATGAATACACTAGCCTCGTTgtttgtagtagtagggcagagttggagtgttaagaatgtacataagggtg #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGA-GATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagaTACCCCAATGTCAATGTGCATAACTTTACCACCAGCTGGAGACGATGGGCTGG-CTTTAATGCCATTGTGCATAAACACcggtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGA-GATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagaTACCCCAATGTCAATGTGCATAACTTTACCACCAGCTGGAGACGATGGGCTGG-CTTTAATGCCATTGTGCATAAACACcggtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGCTGGAGACGATGGGCTGGCTTTAATGCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGCTGGAGACGATGGGCTGGCTTTAATGCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from Pairagon ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGA-GATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGCTGGAGACGATGGGCTGG-CTTTAATGCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from Exonerate_protein2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGCTGGAGACGATGGGCTGGCTTTAATGCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from Exonerate_coding2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGCTGGAGACGATGGGCTGGCTTTAATGCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccagtccttatatggcaaagcattcacgtgtgtgtgtttcccccatcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGCTGGAGACGATGGGCTGGCTTTAATGCCATTGTGCATAAACACCGgtaagaaggtggggttcatgactcagatatatgtacacaggcatggtaag #### Sptbn2_ID622_17 --> 1 - 0 Original Alignment gCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAG---CAG-CAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttataggCACAGGAAGAATCAGGAAGCAGTACAACAGCTTTTA---CGCCCTCAGGACAACCGCAAGGAGCGGCCAGCACT-CATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from CESAR gCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGA---GAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttataggCACAGGAAGAATCAGGAAGCAGTACAACAGCTTTTA---CGCCCTCAGGACAACCGCAAGGAGCGGCCAGCACTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Spaln_aa2Genome GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTTTACGCCCTCAGGACAACCGCAAGGAGCGGCCAGCACTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Spaln_nt2Genome GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGC----AGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTTT---ACGCCCTCAGGACAACCGCAAGGAGCGGCCAGCAC-TCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Pairagon GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAG----CAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTTT---ACGCCCTCAGGACAACCGCAAGGAGCGGCCAGCAC-TCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Exonerate_protein2genome GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTTTACGCCCTCAGGACAACCGCAAGGAGCGGCCAGCACTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Exonerate_coding2genome GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTTTACGCCCTCAGGACAACCGCAAGGAGCGGCCAGCACTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from GeneWise GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGA---GAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACAGCTTTTA---CGCCCTCAGGACAACCGCAAGGAGCGGCCAGCACTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat #### Sptbn2_ID627_22 --> 0 - 0 Original Alignment ACCCTGCAGAAGGAGATCCAGGGC-CATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCCATG-GCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from CESAR ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCCATGGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Spaln_aa2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCCATGGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Spaln_nt2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCCATGGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Pairagon ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCCATGGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Exonerate_protein2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCCATGGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Exonerate_coding2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCCATGGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from GeneWise ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCCATGGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTA-TTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTACTTGGAACAAG-CCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtccgcgcatgtatgtgacacatagcaagtaatacccgttctccttttca Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTACTTGGAACAAGCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtccgcgcatgtatgtgacacatagcaagtgttttgttttgtttttttaa Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTACTTGGAACAAGCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagtaatacccgttctccttttca Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTACTTGGAACAAGCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagtaatacccgttctccttttca Alignment from Pairagon ------------------------------------------------AGGATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTA-TTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG TCTTACTCCCAAAGACCTGAAGTTTAGAGATGCTCTCCCACCCCACCCAGGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTACTTGGAACAAG-CCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagtaatacccgttctccttttca Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTACTTGGAACAAGCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagtaatacccgttctccttttca Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTACTTGGAACAAGCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagtaatacccgttctccttttca Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTACTTGGAACAAGCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagtaatacccgttctccttttca #### Sptbn2_ID631_26 --> 0 - 2 Original Alignment GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAG-ATGGATGCCCAGGAGCGGCCCcg tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGCATGGATG-TCAGGAGCGGCCCcggtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from CESAR GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGCATGGATGTCAGGAGCGGCCCcggtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from Spaln_aa2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGCATGGATGTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from Spaln_nt2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGCATGGATGTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from Pairagon GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAG-ATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGCATGGATG-TCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from Exonerate_protein2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGCATGGATGTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from Exonerate_coding2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGCATGGATGTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa Alignment from GeneWise GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtagtctaccagctctgcctgtctttcctctttgcccccacccccagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCCGCTGCCCGCCGACAGCTGTTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGCATGGATGTCAGGAGCGGCCCCGgtatgccccatagtgcctggcttcctccacaagttacatgatgctactaa #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGG-AAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGCAAAAGGA-GAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATgggtgagtattgatatcaaatgctaaagctggtaaatgaccctcaccctctg Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGCAAAAGGAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATgggtgagtattgatatcaaatgctaaagctggtaaatgacccttttcctgcc Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGCAAAAGGAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctcaccctctg Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGCAAAAGGAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctcaccctctg Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGCAAAAGGAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctcaccctctg Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGCAAAAGGAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctcaccctctg Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGCAAAAGGAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctcaccctctg Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG atttttcaactccccctgcttcctgctctctccccaccgcatcctttcagCTGGAAGAAAGGGAAAATGAACGGCAAAAGGAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTTCAGAGCCTATGGCTAGTCAGCCAGAGGGGAGTCTGGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtgagtattgatatcaaatgctaaagctggtaaatgaccctcaccctctg #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCT-GCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTCGCACAGG-ACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACaggtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from CESAR GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTCGCACAGGACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACaggtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTCGCACAGGACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGC---CCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTCGCACAGGACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Pairagon GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCT-GCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTCGCACAGG-ACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTCGCACAGGACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTCGCACAGGACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTCGCACAGGACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga #### Sptbn2_ID640_35 --> 1 - 0 Original Alignment cTTACAGGATGGCAAAGAATACCTA-TTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcaatatttgttactttcccccagcTTACAGGATGGTAAGGAATACCTACTTCC-AGCCCGAGATGAGgtactaccccccctgcccaccgtggtctctcttgctaccagttctaggtt Alignment from CESAR cTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcaatatttgttactttcccccagcTTACAGGATGGTAAGGAATACCTACTTCCAGCCCGAGATGAGgtactaccccccctgcccaccgtggtctctcttgctaccagttctaggtt Alignment from Spaln_aa2Genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcaatatttgttactttcccccagCTTACAGGATGGTAAGGAATACCTACTTCCAGCCCGAGATGAGgtactaccccccctgcccaccgtggtctctcttgctaccagttctaggtt Alignment from Spaln_nt2Genome CTTACAGGATGGCAAAGAATACCTA-TTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcaatatttgttactttcccccagCTTACAGGATGGTAAGGAATACCTACTTCCAGCCCGA-GATGAGgtactaccccccctgcccaccgtggtctctcttgctaccagttctaggtt Alignment from Pairagon CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcaatatttgttactttcccccagCTTACAGGATGGTAAGGAATACCTACTTCCAGCCCGAGATGAGgtactaccccccctgcccaccgtggtctctcttgctaccagttctaggtt Alignment from Exonerate_protein2genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcaatatttgttactttcccccagCTTACAGGATGGTAAGGAATACCTACTTCCAGCCCGAGATGAGgtactaccccccctgcccaccgtggtctctcttgctaccagttctaggtt Alignment from Exonerate_coding2genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcaatatttgttactttcccccagCTTACAGGATGGTAAGGAATACCTACTTCCAGCCCGAGATGAGgtactaccccccctgcccaccgtggtctctcttgctaccagttctaggtt Alignment from GeneWise CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcaatatttgttactttcccccagCTTACAGGATGGTAAGGAATACCTACTTCCAGCCCGAGATGAGgtactaccccccctgcccaccgtggtctctcttgctaccagttctaggtt #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGC-TTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagaGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTCTTTCTGCACC-GCTACGGACTTACCAAGGCATTTTGACTGCCaggtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagaGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTCTTTCTGCACCGCTACGGACTTACCAAGGCATTTTGACTGCCaggtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTCTTTCTGCACCGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGG-CTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTCTTTCTGCACC-GCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGG-CTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTCTTTCTGCACC-GCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTCTTTCTGCACCGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTCTTTCTGCACCGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCGCCCCATAGTGCACCCCAATCACAGTCTTTCTGCACCGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAG-GAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagaGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGCGAATCGGCAC-GCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagaGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGCGAATCGGCACGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGCGAATCGGCACGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGCGAATCGGCACGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAG-GAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGCGAATCGGCAC-GCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGCGAATCGGCACGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGCGAATCGGCACGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGCGAATCGGCACGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac #### Ssh3_ID446_10 --> 0 - 2 Original Alignment CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCC-AACCTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaggaggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTGCCCAACCTAG-GGAACTTCAAAAGAACaggtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from CESAR CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaaggggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTGCCCAACCTAGGGAACTTCAAAAGAACaggtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Spaln_aa2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggaggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTGCCCAACCTAGGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Spaln_nt2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggaggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTGCCCAACCTAGGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Pairagon CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggaggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTGCCCAACCTAGGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Exonerate_protein2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggaggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTGCCCAACCTAGGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Exonerate_coding2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggaggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTGCCCAACCTAGGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from GeneWise CCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGGTAGGAGGTCCTTTGGCTCCATCTCTCTGTCCCCAGGGCTCTGAATGGAATGCTGCCCAACCTAGGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGA-TGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGACTGTC-TCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttggttgtctccctgtgtcctcagGGCTCTGAATGGAA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGACTGTCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttggctccatctctctgtccccagGGCTCTGAATGGAA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGACTGTCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttggttgtctccctgtgtcctcagGGCTCTGAATGGAA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGACTGTCTCT------ATACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttggttgtctccctgtgtcctcagGGCTCTGAATGGAA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGACTGTCTCT------ATACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttggttgtctccctgtgtcctcagGGCTCTGAATGGAA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGA------CTGTCTCTATACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttggttgtctccctgtgtcctcagGGCTCTGAATGGAA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGA------CTGTCTCTATACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCTTCCCACACCTCTACTTGgtaaggggtcctttggttgtctccctgtgtcctcagGGCTCTGAATGGAA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAA acaggtcatggtaggcctgttctttaccagcccagcactcgtgtccctagCTCCATCAGGCCCTGGAACTACACCTTGGA------CTGTCTCTATACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCTTCCCACACCTCTACTTGGTAAGGGGTCCTTTGGTTGTCTCCCTGTGTCCTCAGGGCTCTGAATGGAA #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAG-GCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcaggGCCTCAGAGCAGGAAAAGACGGAACAGCGCAATCC-GGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcaggGCCTCAGAGCAGGAAAAGACGGAACAGCGCAATCCGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGCGCAATCCGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGCGCAATCCGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGCGCAATCCGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGCGCAATCCGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Exonerate_coding2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGCGCAATCCGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGCGCAATCCGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCT-GACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca caagtatgatggagtgattggggtgatggcccactgtacctccattgcaggGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCGGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCCATGTCTCGACCTGGAGT-TTTTCGACCACCCAATGCTGAGCCCGGGcagtaagtggacagggtgaagcagaggaacaaggaggaaggtgttgctgctg Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca caagtatgatggagtgattggggtgatggcccactgtacctccattgcaggGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCGGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCCATGTCTCGACCTGGAGTTTTTCGACCACCCAATGCTGAGCCCGGGcagtaagtggacagggtgaagcagaggaacaaggaggaaggtgttgctgctg Alignment from Spaln_aa2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtatgatggagtgattggggtgatggcccactgtacctccattgcagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCGGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCCATGTCTCGACCTGGAGTTTTTCGACCACCCAATGCTGAGCCCGGGCAgtaagtggacagggtgaagcagaggaacaaggaggaaggtgttgctgctg Alignment from Spaln_nt2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCT-GACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtatgatggagtgattggggtgatggcccactgtacctccattgcagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCGGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCCATGTCTCGACCTGGAGT-TTTTCGACCACCCAATGCTGAGCCCGGGCAgtaagtggacagggtgaagcagaggaacaaggaggaaggtgttgctgctg Alignment from Pairagon GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCT-GACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtatgatggagtgattggggtgatggcccactgtacctccattgcagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCGGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCCATGTCTCGACCTGGAGT-TTTTCGACCACCCAATGCTGAGCCCGGGCAgtaagtggacagggtgaagcagaggaacaaggaggaaggtgttgctgctg Alignment from Exonerate_protein2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtatgatggagtgattggggtgatggcccactgtacctccattgcagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCGGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCCATGTCTCGACCTGGAGTTTTTCGACCACCCAATGCTGAGCCCGGGCAgtaagtggacagggtgaagcagaggaacaaggaggaaggtgttgctgctg Alignment from Exonerate_coding2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtatgatggagtgattggggtgatggcccactgtacctccattgcagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCGGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCCATGTCTCGACCTGGAGTTTTTCGACCACCCAATGCTGAGCCCGGGCAgtaagtggacagggtgaagcagaggaacaaggaggaaggtgttgctgctg Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtatgatggagtgattggggtgatggcccactgtacctccattgcagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTACTTACTACCGGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCCATGTCTCGACCTGGAGTTTTTCGACCACCCAATGCTGAGCCCGGGCAgtaagtggacagggtgaagcagaggaacaaggaggaaggtgttgctgctg #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTC-AAGCCTGTCTCTATCCAGACCATGtg tgcagctaatcacctggtattgggttcttgtttactctattctattccagcGGCTTAAGTGTGACGTCTGGTGGTCAAAGCCGAATCTTCCAAGCCTG-CTCTATCCAGACCATGtggtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgcagctaatcacctggtattgggttcttgtttactctattctattccagcGGCTTAAGTGTGACGTCTGGTGGTCAAAGCCGAATCTTCCAAGCCTGCTCTATCCAGACCATGtggtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCAAAGCCGAATCTTCCAAGCCTGCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCAAAGCCGAATCTTCCAAGCCTGCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Pairagon GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTT-CAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCAAAGCCGAATCTTCCAAGCCTG-CTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCAAAGCCGAATCTTCCAAGCCTGCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCAAAGCCGAATCTTCCAAGCCTGCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCAAAGCCGAATCTTCCAAGCCTGCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct #### Ssh3_ID451_5 --> 1 - 2 Original Alignment tTCCCAC---------AGCTGCACCCTGGGCCTGGTCTTGCCCCTC-TGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagtTGCCACAGCTGCACCAGCTGCACACTAGGTCTTGTCCTGCCCCTCCTGGAGTG-TACCCAAGTATACCTGGATGGGGATgggtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from CESAR tTCCCACAGCTGCACC---------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagtTGCCACAGCTGCACCAGCTGCACACTAGGTCTTGTCCTGCCCCTCCTGGAGTGTACCCAAGTATACCTGGATGGGGATgggtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Spaln_aa2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagCTGCACCAGCTGCACACTAGGTCTTGTCCTGCCCCTCCTGGAGTGTACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Spaln_nt2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagCTGCACCAGCTGCACACTAGGTCTTGTCCTGCCCCTCCTGGAGTGTACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Pairagon TTCCCACAGCTGCACC---------CTGGGCCTGGTCTTGCCCCT-CTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagTTGCCACAGCTGCACCAGCTGCACACTAGGTCTTGTCCTGCCCCTCCTGGAGTG-TACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Exonerate_protein2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagCTGCACCAGCTGCACACTAGGTCTTGTCCTGCCCCTCCTGGAGTGTACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagCTGCACCAGCTGCACACTAGGTCTTGTCCTGCCCCTCCTGGAGTGTACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta #### Stambpl1_ID6902_9 --> 1 - 0 Original Alignment cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAA-AAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattatgtgtatgcccccaccctcacgtgcagcACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAGG-CTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggaatgggattgttaatgtatttgatcaattgtc Alignment from CESAR cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattatgtgtatgcccccaccctcacgtgcagcACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggaatgggattgttaatgtatttgatcaattgtc Alignment from Spaln_aa2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattatgtgtatgcccccaccctcacgtgcagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggaatgggattgttaatgtatttgatcaattgtc Alignment from Spaln_nt2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattatgtgtatgcccccaccctcacgtgcagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggaatgggattgttaatgtatttgatcaattgtc Alignment from Pairagon CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattatgtgtatgcccccaccctcacgtgcagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggaatgggattgttaatgtatttgatcaattgtc Alignment from Exonerate_protein2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattatgtgtatgcccccaccctcacgtgcagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggaatgggattgttaatgtatttgatcaattgtc Alignment from Exonerate_coding2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattatgtgtatgcccccaccctcacgtgcagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggaatgggattgttaatgtatttgatcaattgtc Alignment from GeneWise CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattatgtgtatgcccccaccctcacgtgcagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTTGTAAACAAGAAGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggaatgggattgttaatgtatttgatcaattgtc #### Stip1_ID1994_7 --> 2 - 2 Original Alignment ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa cttgacttgtctggtttatatatttaactttaaatttattttttttaaagctGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGCGAACTCTGTG-GAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTaagtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from CESAR ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa cttgacttgtctggtttatatatttaactttaaatttattttttttaaagctGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGCGAACTCTGT-GGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTaagtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from Spaln_aa2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGCGAACTCTGTGGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from Spaln_nt2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGCGAACTCTGTGGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from Pairagon CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGG-GAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGCGAACTCTGTG-GAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from Exonerate_protein2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGCGAACTCTGTGGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from Exonerate_coding2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGCGAACTCTGTGGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from GeneWise CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGCGAACTCTGTGGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGATGAGGAGCTGGAA-GAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagctGGCAAGAAGACAACAGATGAGGAGCTAGAGCGAGATGT-GGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from CESAR ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagctGGCAAGAAGACAACAGATGAGGAGCTAGAGCGAGATGTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGCGAGATGTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGCGAGATGTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Pairagon CTGGCAAGAAGACAACAGATGAGGAGCTGGAA-GAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGCGAGATG-TGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGCGAGATGTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGCGAGATGTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from GeneWise CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGCGAGATGTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCA-GCCCTGCCTCTTGCCCCCAACAACCTTg acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGC-GCTAGCCCCCAACAACCTTggtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from CESAR AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCGCTAGCCCCCAACAACCTTggtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Pairagon AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTC-AGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCG-CTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTT-GTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTCGTCC-TGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgt Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTCGTCCTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgc Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTCGTCCTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgt Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTCGTCCTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgt Alignment from Pairagon GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTCGTCCTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgt Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTCGTCCTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgt Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTCGTCCTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgt Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaatttgacagtaacctcaaaacttgtctttatctgacccacagGTCCTGTACATCCAGGCCTTTCGTCCTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCACCAGAGATGGAGgtgcttgaaaggcagggttcagggcaaggtgtctgaatgctgtttcatgt #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTG-CAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCCAGCTGG-ATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCCAGCTGGATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCCAGCTGGATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGC-AGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCCAGCTGG-ATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTG-CAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCCAGCTGG-ATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCCAGCTGGATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCCAGCTGGATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCCAGCTGGATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaataggcTTCATCAAGGTGCTGCCTGTATATGG-CTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from CESAR gcTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaataggcTTCATCAAGGTGCTGCCTGTATATGG-CTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGGCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGGCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Pairagon GCTTCATCAAGGTCCTG-CTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGG-CTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGGCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGGCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCCTGTATATGGCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATG-GGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCT-TCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAggcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from CESAR tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAggcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACA---------G gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGGCAAGTTCTgtgcatgccagggtagatagtggtggccagcaacatctgga #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACA-GCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg aggtaattgatccactcccaatttacctctgatcaaacaatcttttctagctGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCACGCTGCTG-CACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCCGGCCCAGAGGCTGGTCCTGCCCCTGACTTCCCTTTCCCCCCTCCCTGGATGGGTATGCCTCTACCTCCACCATTTggtaagatgcccatcacctaccctcttggacatgatgtggaatactgaggc Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg aggtaattgatccactcccaatttacctctgatcaaacaatcttttctagctGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCACGCTGCTGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCCGGCCCAGAGGCTGGTCCTGCCCCTGACTTCCCTTTCCCCCCTCCCTGGATGGGTATGCCTCTACCTCCACCATTTggtaagatgcccatcacctaccctcttggacatgatgtggaatactgaggc Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacctctgatcaaacaatcttttctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCACGCTGCTGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCCGGCCCAGAGGCTGGTCCTGCCCCTGACTTCCCTTTCCCCCCTCCCTGGATGGGTATGCCTCTACCTCCACCATTTGgtaagatgcccatcacctaccctcttggacatgatgtggaatactgaggc Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACA-GCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacctctgatcaaacaatcttttctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCACGCTGCT-GCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCCGGCCCAGAGGCTGGTCCTGCCCCTGACTTCCCTTTCCCCCCTCCCTGGATGGGTATGCCTCTACCTCCACCATTTGgtaagatgcccatcacctaccctcttggacatgatgtggaatactgaggc Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACA-GCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacctctgatcaaacaatcttttctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCACGCTGCT-GCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCCGGCCCAGAGGCTGGTCCTGCCCCTGACTTCCCTTTCCCCCCTCCCTGGATGGGTATGCCTCTACCTCCACCATTTGgtaagatgcccatcacctaccctcttggacatgatgtggaatactgaggc Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacctctgatcaaacaatcttttctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCACGCTGCTGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCCGGCCCAGAGGCTGGTCCTGCCCCTGACTTCCCTTTCCCCCCTCCCTGGATGGGTATGCCTCTACCTCCACCATTTGgtaagatgcccatcacctaccctcttggacatgatgtggaatactgaggc Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacctctgatcaaacaatcttttctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCACGCTGCTGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCCGGCCCAGAGGCTGGTCCTGCCCCTGACTTCCCTTTCCCCCCTCCCTGGATGGGTATGCCTCTACCTCCACCATTTGgtaagatgcccatcacctaccctcttggacatgatgtggaatactgaggc Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacctctgatcaaacaatcttttctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCACGCTGCTGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCCGGCCCAGAGGCTGGTCCTGCCCCTGACTTCCCTTTCCCCCCTCCCTGGATGGGTATGCCTCTACCTCCACCATTTGgtaagatgcccatcacctaccctcttggacatgatgtggaatactgaggc #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACA-CTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagccTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACCTACTGG-TGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagccTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACCTACTGGTGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACCTACTGGTGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACCTACTGGTGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACA-CTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACCTACTGG-TGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACCTACTGGTGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACCTACTGGTGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACCTACTGGTGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc #### Taf5_ID10096_4 --> 0 - 2 Original Alignment GTATTTTTTGGTTTACTAAAA-GAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAACGAACCAG-CATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACaggtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from CESAR GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAACGAACCAGCATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACaggtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from Spaln_aa2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAACGAACCAGCATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from Spaln_nt2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAACGAACCAGCATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from Pairagon GTATTTTTTGGTTTACTAAAA-GAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAACGAACCAG-CATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from Exonerate_protein2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAACGAACCAGCATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from Exonerate_coding2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAACGAACCAGCATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from GeneWise GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAACGAACCAGCATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCT-GTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagagCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTCGTGGTGC-GGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATtggtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagagCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTCGTGGTGCGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATtggtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTCGTGGTGCGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTCGTGGTGCGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCT-GTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTCGTGGTGC-GGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTCGTGGTGCGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTCGTGGTGCGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTCGTGGTGCGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTG-GGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTCGGTTGCA-CTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCAcgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from CESAR TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTCGGTTGCACTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCAcgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTCGGTTGCACTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from Spaln_nt2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTCGGTTGCACTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from Pairagon TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTG-CCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTCGGTTGCA-CTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTCGGTTGCACTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTCGGTTGCACTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca Alignment from GeneWise TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gatggcctgccaggccagattattgtctacagcttctctgcaccacccagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTCGGTTGCACTCCAACACTGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTAGCCCATGCACgtaagcgacgtttctcgcgtgatgatattataatatcctactgggtacca #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTG-GGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTGCTGCTGCGGCACGC-CTTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTGCTGCTGCGGCACGCCTTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTGCTGCTGCGGCACGCCTTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTG-GGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTGCTGCTGCGGCAC-GCCTTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAG---AGCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTG-GGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTGCTGCTGCGGCAC-GCCTTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAG---AGCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTGCTGCTGCGGCACGCCTTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTGCTGCTGCGGCACGCCTTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gcacaatgtaactcccattcactgtgcagggtttgtctcatttctttcagGAAGTGGTACAGTATGTCCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTGCTGCTGCGGCACGCCTTGTACCTCCTACGTGAGCACCGACACAGAAGAAACTCCCAAAGAAGA---GCAGGCCAACAGgtgagcacatagggattggactaagtggtgacgcatgtaacctcttctcc #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCCCAG-CACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagtGATGAGTATCTATCCCAGCCACT-CATGCTAACCTTGAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagtGATGAGTATCTATCCCAGCCACTCATGCTAACCTTGAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCCACTCATGCTAACCTTGAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCCACTCATGCTAACCTTGAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from Pairagon TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCCACTCATGCTAACCTTGAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCCACTCATGCTAACCTTGAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCCACTCATGCTAACCTTGAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCCACTCATGCTAACCTTGAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATG-AAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGCAAGGCTGTCT-CCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtcagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGCAAGGCTGTCTCCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGCAAGGCTGTCTCCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGCAAGGCTGTCTCCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATG-AAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGCAAGGCTGTCT-CCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGCAAGGCTGTCTCCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGCAAGGCTGTCTCCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGCAAGGCTGTCTCCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CCAGTGACG GGTGAGCCTGCAACTTGGATG-ACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACAgtcagactaaagggaagactaacttccgttttcttcctaagGGTGAGCCTGCAACCTGGATGCACCTTTATCA-ATCCTACTGGGGTGAGCAGATTGGTCAAAAGATCCGAAAGATCACAGATtggtatgtaatgaatcctcattacccagtacaagatgagaccagtcaatttg Alignment from CESAR CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACAgtgaggctaaagggaagactaacttccgttttcttcctaagGGTGAGCCTGCAACCTGGATGCACCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAAAAGATCCGAAAGATCACAGATtggtatgtaatgaatcctcattacccagtacaagatgagaccagtcaatttg Alignment from Spaln_aa2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtcagactaaagggaagactaacttccgttttcttcctaagGGTGAGCCTGCAACCTGGATGCACCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAAAAGATCCGAAAGATCACAGATTGgtatgtaatgaatcctcattacccagtacaagatgagaccagtcaatttg Alignment from Spaln_nt2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtcagactaaagggaagactaacttccgttttcttcctaagGGTGAGCCTGCAACCTGGATGCACCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAAAAGATCCGAAAGATCACAGATTGgtatgtaatgaatcctcattacccagtacaagatgagaccagtcaatttg Alignment from Pairagon CCAGTGAC-----------------------------------------GGGTGAGCCTGCAACTTGGATG-ACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAGTCAGACTAAAGGGAAGACTAACTTCCGTTTTCTTCCTAAGGGTGAGCCTGCAACCTGGATGCACCTTTATCA-ATCCTACTGGGGTGAGCAGATTGGTCAAAAGATCCGAAAGATCACAGATTGgtatgtaatgaatcctcattacccagtacaagatgagaccagtcaatttg Alignment from Exonerate_protein2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtcagactaaagggaagactaacttccgttttcttcctaagGGTGAGCCTGCAACCTGGATGCACCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAAAAGATCCGAAAGATCACAGATTGgtatgtaatgaatcctcattacccagtacaagatgagaccagtcaatttg Alignment from Exonerate_coding2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtcagactaaagggaagactaacttccgttttcttcctaagGGTGAGCCTGCAACCTGGATGCACCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAAAAGATCCGAAAGATCACAGATTGgtatgtaatgaatcctcattacccagtacaagatgagaccagtcaatttg Alignment from GeneWise CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtcagactaaagggaagactaacttccgttttcttcctaagGGTGAGCCTGCAACCTGGATGCACCTTTATCAATCCTACTGGGGTGAGCAGATTGGTCAAAAGATCCGAAAGATCACAGATTGgtatgtaatgaatcctcattacccagtacaagatgagaccagtcaatttg #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCT-TGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagcTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTCTGCCGTGGCT-TCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactctgaggttgtctgattgccagGGTGAGCCT Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCT-TGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagcTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTCTGCCGTGGCT-TCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactaacttccgttttcttcctaagGGTGAGCCT Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTCTGCCGTGGCTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactctgaggttgtctgattgccagGGTGAGCCT Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTCTGCCGTGGCTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactctgaggttgtctgattgccagGGTGAGCCT Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCT-TGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTCTGCCGTGGCTT-CTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactctgaggttgtctgattgccagGGTGAGCCT Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTCTGCCGTGGCTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactctgaggttgtctgattgccagGGTGAGCCT Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTCTGCCGTGGCTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactctgaggttgtctgattgccagGGTGAGCCT Alignment from GeneWise TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTCTGCCGTGGCTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactctgaggttgtctgattgccagGGTGAGCCT #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCC-TCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagggTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTCCTCAGATT-TAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from CESAR gt---------TTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tggggctgccatccccgccatccccttacactttcctgaaggaTATTGAGGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTCCTCAGATTTAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTCCTCAGATTTAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTCCTCAGATTTAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from Pairagon ----------------------------------------------------TTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTA-----------TAACTTCAGAGTCTTGAAG CTCAGTTACTGGGGCTGCCATCCCCTTACACTTTCCTGAAGGATATTGAGGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGC-----------AGTCCTCAGATTTAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTCCTCAGATTTAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTCCTCAGATTTAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTCCTCAGATTTAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt #### Tdrd1_ID12205_6 --> 0 - 0 Original Alignment GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCG-GGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTACGGTGCTG-GAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from CESAR GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTACGGTGCTGGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Spaln_aa2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTACGGTGCTGGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Spaln_nt2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTACGGTGCTGGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Pairagon GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCG-GGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTACGGTGCTG-GAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Exonerate_protein2genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTACGGTGCTGGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Exonerate_coding2genome ATAAATCACCATTTGAAACAAAGGCCATTGAAGTGAAGA------GTGAGGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG GACACATGGGAGCTGGGCTGCCTCAAGCTAAGAAAACGCTTTCTTTTCAGGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTACGGTGCTGGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from GeneWise GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTACGGTGCTGGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat #### Tdrd1_ID12222_23 --> 2 - 0 Original Alignment agATACCACACAGCAGA-GACTGCTGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagagATACCTCACAGTAGGCGACTGCTGCT-CACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from CESAR agATACCACACAGCAGA-GACTGCTGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagagATACCTCACAGTAGGCGACTGCTGC-TCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from Spaln_aa2Genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGCGACTGCTGCTCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from Spaln_nt2Genome AGATACCACACAGCAGA-GACTGCTGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGCGACTGCTGCT-CACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from Pairagon AGATACCACACAGCAGA-GACTGCTGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGCGACTGCTGCT-CACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from Exonerate_protein2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGCGACTGCTGCTCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from Exonerate_coding2genome AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGCGACTGCTGCTCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from GeneWise AGATACCACACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGCGACTGCTGCTCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag #### Tex40_ID1868_4 --> 0 - 1 Original Alignment CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATT-CTCAAAAAAGCCCTCATCa atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCCTCA-AAAAGCCCTCATTagtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from CESAR CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCCTCAAAAAGCCCTCATTagtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from Spaln_aa2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCCTCAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from Spaln_nt2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCCTCAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from Pairagon CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCCTCAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from Exonerate_protein2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCCTCAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from Exonerate_coding2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCCTCAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from GeneWise CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCCTCAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAA-AACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagttATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAACAACACTT-CAGGCAGAATCCTTCCGAGCCCAGTGCGGCAggtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from CESAR ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagttATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAACAACACTTCAGGCAGAATCCTTCCGAGCCCAGTGCGGCAggtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAACAACACTTCAGGCAGAATCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAACAACACTTCAGGCAGAATCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from Pairagon TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAA-AACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAACAACAC-TTCAGGCAGAATCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAACAACACTTCAGGCAGAATCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAACAACACTTCAGGCAGAATCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from GeneWise TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAACAACACTTCAGGCAGAATCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta #### Tm7sf2_ID1413_7 --> 0 - 1 Original Alignment GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTG-TTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTCTTATACC-TCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGggtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from CESAR GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTCTTATACCTCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGggtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Spaln_aa2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTCTTATACCTCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Spaln_nt2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTCTTATACCTCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Pairagon GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCC-TGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTCTTATACC-TCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Exonerate_protein2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTCTTATACCTCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Exonerate_coding2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTCTTATACCTCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from GeneWise GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTCTTATACCTCCACAACCCCTGGGGTTCCCAATGGCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTG-CTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaaggtGTTGCAGCTTTATTGATACTGCCTGCCTGCCA-CATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCC---ACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaaggtGTTGCAGCTTTATTGATA---CTGCCTGCCTGCCACATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCCTGCCTGCCACATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGC-TGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCCTGCCTGCCA-CATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTG-CTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCCTGCCTGCCA-CATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCCTGCCTGCCACATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCCTGCCTGCCACATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCCTGCCTGCCACATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATC-TTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag tttgtggtaaattctattcaggctaacctttgtataattttctcctctagaGGTTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCCTTCCTAATCT-AGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTaggtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag tttgtggtaaattctattcaggctaacctttgtataattttctcctctagaGGTTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCCTTCCTAATCTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTaggtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCCTTCCTAATCTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCCTTCCTAATCTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCAT-CTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCCTTCCTAATC-TAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCCTTCCTAATCTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCCTTCCTAATCTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tttgtggtaaattctattcaggctaacctttgtataattttctcctctagAGGTTCTATAGGGCTCCGGATTGCTCTGGCCATCTCAGCTACAGCTATCCTTCCTAATCTAGTATCTGCCTGCATACTTCGATTTGGCACCAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtgagttgagggacaggtccacttggtgcgagctgagttcatttcctggg #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCA-GCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCACGCCC-TTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCACGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCACGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCACGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCACGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCACGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCACGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCACGCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa #### Trim8_ID9936_5 --> 1 - 1 Original Alignment gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTG-AACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg taaggtaaggcgcctcatcttccagaactgcttcttgggccatgccacaggACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGCAACTCCA-TCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAGCAGTTGCGGAAAATGCTTGAAggtaagttgttaagggccactgtacaggtgatggccagtcagcacccaatt Alignment from CESAR gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg tgaggtaaggcgcctcatcttccagaactgcttcttgggccatgccacaggACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGCAACTCCATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAGCAGTTGCGGAAAATGCTTGAAggtaagttgttaagggccactgtacaggtgatggccagtcagcacccaatt Alignment from Spaln_aa2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taaggtaaggcgcctcatcttccagaactgcttcttgggccatgccacagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGCAACTCCATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAGCAGTTGCGGAAAATGCTTGAAGgtaagttgttaagggccactgtacaggtgatggccagtcagcacccaatt Alignment from Spaln_nt2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taaggtaaggcgcctcatcttccagaactgcttcttgggccatgccacagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGCAACTCCATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAGCAGTTGCGGAAAATGCTTGAAGgtaagttgttaagggccactgtacaggtgatggccagtcagcacccaatt Alignment from Pairagon GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taaggtaaggcgcctcatcttccagaactgcttcttgggccatgccacagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGCAACTCCATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAGCAGTTGCGGAAAATGCTTGAAGgtaagttgttaagggccactgtacaggtgatggccagtcagcacccaatt Alignment from Exonerate_protein2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taaggtaaggcgcctcatcttccagaactgcttcttgggccatgccacagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGCAACTCCATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAGCAGTTGCGGAAAATGCTTGAAGgtaagttgttaagggccactgtacaggtgatggccagtcagcacccaatt Alignment from Exonerate_coding2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taaggtaaggcgcctcatcttccagaactgcttcttgggccatgccacagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGCAACTCCATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAGCAGTTGCGGAAAATGCTTGAAGgtaagttgttaagggccactgtacaggtgatggccagtcagcacccaatt Alignment from GeneWise AACACCAAGTCTGTGAAAATCCTAATG---------GACAGGACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taaggtaagGCGCCTCATCTTCCAGAACTGCTTCTTGGGCCATGCCACAGGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGCAACTCCATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAGCAGTTGCGGAAAATGCTTGAAGgtaagttgttaagggccactgtacaggtgatggccagtcagcacccaatt #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAAC-CCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCCAGAGT-AGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCCAGAGTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCCAGAGTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCCAGAGTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCCAGAGTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCCAGAGTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Exonerate_coding2genome CCGCTGCGCCTGCAGGCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccCCCTACTTCTCCCAGGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCCAGAGTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCCAGAGTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg #### Trmt112_ID1862_3 --> 0 - 0 Original Alignment TTAAACTTGGCC-GAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aagtccgggtgctcgagtgcatcctgattattaataattatttcaaatagTTGAACTTAGCCCGCAGTGC-CAGAGAGCCAACTGAGGGCTATGAGCATGATGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcatcgtgcctaggtgtccatggttgttaccagcct Alignment from CESAR TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aagtccgggtgctcgagtgcatcctgattattaataattatttcaaatagTTGAACTTAGCCCGCAGTGCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcatcgtgcctaggtgtccatggttgttaccagcct Alignment from Spaln_aa2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aagtccgggtgctcgagtgcatcctgattattaataattatttcaaatagTTGAACTTAGCCCGCAGTGCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcatcgtgcctaggtgtccatggttgttaccagcct Alignment from Spaln_nt2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aagtccgggtgctcgagtgcatcctgattattaataattatttcaaatagTTGAACTTAGCCCGCAGTGCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcatcgtgcctaggtgtccatggttgttaccagcct Alignment from Pairagon TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aagtccgggtgctcgagtgcatcctgattattaataattatttcaaatagttgaacttagcccgcagtgccag-----------------------AGAGCCAACTGAGGGCTATGAGCATGATGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcatcgtgcctaggtgtccatggttgttaccagcct Alignment from Exonerate_protein2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aagtccgggtgctcgagtgcatcctgattattaataattatttcaaatagTTGAACTTAGCCCGCAGTGCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcatcgtgcctaggtgtccatggttgttaccagcct Alignment from Exonerate_coding2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aagtccgggtgctcgagtgcatcctgattattaataattatttcaaatagTTGAACTTAGCCCGCAGTGCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcatcgtgcctaggtgtccatggttgttaccagcct Alignment from GeneWise TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aagtccgggtgctcgagtgcatcctgattattaataattatttcaaatagTTGAACTTAGCCCGCAGTGCCAGAGAGCCAACTGAGGGCTATGAGCATGATGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcatcgtgcctaggtgtccatggttgttaccagcct #### Trpt1_ID1979_2 --> 0 - 1 Original Alignment GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTG-AAGCTGGGACTTCCCATGCGAGCTg aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGCGAGCTGGGAC-TCCCATGCAAGCCggtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from CESAR GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGCGAGCTGGGACTCCCATGCAAGCCggtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Spaln_aa2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGCGAGCTGGGACTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Spaln_nt2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGA-AGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGCGAGCTGGGAC-TCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Pairagon GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTG-AAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGCGAGCTGGGAC-TCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Exonerate_protein2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGCGAGCTGGGACTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Exonerate_coding2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGCGAGCTGGGACTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from GeneWise GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGCGAGCTGGGACTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc #### Trpt1_ID1983_6 --> 2 - 1 Original Alignment atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTC-CTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc atagaatgtgactgtcatatggtcgctccgccacgctgttctctccacagatGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGAAATGTTGAAGGTTTCCCTGCTTC-CAAGTACTCTAAGGAGGCTCTCCAGCTTCGGCCTACGcgtaagtatataaaccaccctggtctgacgctcccaataagtctggtgtga Alignment from CESAR atGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc atagaatgtgactgtcatatggtcgctccgccacgctgttctctccacagatGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGAAATGTTGAAGGTTTCCCTGCTTCCAAGTACTCTAAGGAGGCTCTCCAGCTTCGGCCTACGcgtaagtatataaaccaccctggtctgacgctcccaataagtctggtgtga Alignment from Spaln_aa2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaatgtgactgtcatatggtcgctccgccacgctgttctctccacagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGAAATGTTGAAGGTTTCCCTGCTTCCAAGTACTCTAAGGAGGCTCTCCAGCTTCGGCCTACGCgtaagtatataaaccaccctggtctgacgctcccaataagtctggtgtga Alignment from Spaln_nt2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaatgtgactgtcatatggtcgctccgccacgctgttctctccacagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGAAATGTTGAAGGTTTCCCTGCTTCCAAGTACTCTAAGGAGGCTCTCCAGCTTCGGCCTACGCgtaagtatataaaccaccctggtctgacgctcccaataagtctggtgtga Alignment from Pairagon ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaatgtgactgtcatatggtcgctccgccacgctgttctctccacagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGAAATGTTGAAGGTTTCCCTGCTTCCAAGTACTCTAAGGAGGCTCTCCAGCTTCGGCCTACGCgtaagtatataaaccaccctggtctgacgctcccaataagtctggtgtga Alignment from Exonerate_protein2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaatgtgactgtcatatggtcgctccgccacgctgttctctccacagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGAAATGTTGAAGGTTTCCCTGCTTCCAAGTACTCTAAGGAGGCTCTCCAGCTTCGGCCTACGCgtaagtatataaaccaccctggtctgacgctcccaataagtctggtgtga Alignment from Exonerate_coding2genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaatgtgactgtcatatggtcgctccgccacgctgttctctccacagATGGAATTCCT---TTCTGCTTTGCCAATGGGGTGATTCTGACTCCAGGAAATGTTGAAGGTTTCCCTGCTTCCAAGTACTCTAAGGAGGCTCTCCAGCTTCGGCCTACGCgtaagtatataaaccaccctggtctgacgctcccaataagtctggtgtga Alignment from GeneWise ATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atagaatgtgactgtcatatggtcgctccgccacgctgttctctccacagATGGAATTCCTTTC---TGCTTTGCCAATGGGGTGATTCTGACTCCAGGAAATGTTGAAGGTTTCCCTGCTTCCAAGTACTCTAAGGAGGCTCTCCAGCTTCGGCCTACGCgtaagtatataaaccaccctggtctgacgctcccaataagtctggtgtga #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTG-TCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTACTCTGCACTGG-GGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTACTCTGCACTGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Spaln_aa2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTACTCTGCACTGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Spaln_nt2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTACTCTGCACTGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTG-TCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttcTAGACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTACTCTGCACTG-GGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Exonerate_protein2genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTACTCTGCACTGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Exonerate_coding2genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTACTCTGCACTGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctag---ACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTACTCTGCACTGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCCCTC-ACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg ttgtattgagcataaggggtgcgcaatatccttcaccctgctcactgtaggGAGAAGGCTCTTGCCCTCCACAGGAA-CCATGGCATCGAGGCTGCGATGGCTtggtaatcagacaatctgcacatttggtgggtaatggagccaatccacaagg Alignment from CESAR gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg ttgtattgagcataaggggtgcgcaatatccttcaccctgctcactgtaggGAGAAGGCTCTTGCCCTCCACAGGAACCATGGCATCGAGGCTGCGATGGCTtggtaatcagacaatctgcacatttggtgggtaatggagccaatccacaagg Alignment from Spaln_aa2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttgtattgagcataaggggtgcgcaatatccttcaccctgctcactgtagGGAGAAGGCTCTTGCCCTCCACAGGAACCATGGCATCGAGGCTGCGATGGCTTGgtaatcagacaatctgcacatttggtgggtaatggagccaatccacaagg Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttgtattgagcataaggggtgcgcaatatccttcaccctgctcactgtagGGAGAAGGCTCTTGCCCTCCACAGGAACCATGGCATCGAGGCTGCGATGGCTTGgtaatcagacaatctgcacatttggtgggtaatggagccaatccacaagg Alignment from Pairagon GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttgtattgagcataaggggtgcgcaatatccttcaccctgctcactgtagGGAGAAGGCTCTTGCCCTCCACAGGAACCATGGCATCGAGGCTGCGATGGCTTGgtaatcagacaatctgcacatttggtgggtaatggagccaatccacaagg Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttgtattgagcataaggggtgcgcaatatccttcaccctgctcactgtagGGAGAAGGCTCTTGCCCTCCACAGGAACCATGGCATCGAGGCTGCGATGGCTTGgtaatcagacaatctgcacatttggtgggtaatggagccaatccacaagg Alignment from Exonerate_coding2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttgtattgagcataaggggtgcgcaatatccttcaccctgctcactgtagGGAGAAGGCTCTTGCCCTCCACAGGAACCATGGCATCGAGGCTGCGATGGCTTGgtaatcagacaatctgcacatttggtgggtaatggagccaatccacaagg Alignment from GeneWise GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttgtattgagcataaggggtgcgcaatatccttcaccctgctcactgtagGGAGAAGGCTCTTGCCCTCCACAGGAACCATGGCATCGAGGCTGCGATGGCTTGgtaatcagacaatctgcacatttggtgggtaatggagccaatccacaagg #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCCGAT-GTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcaggCTGATGGAGCATGAAGATGACCCTGATCGTGGATG-GCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAggtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcaggCTGATGGAGCATGAAGATGACCCTGATCGTGGATGGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAggtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATCGTGGATGGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATCGTGGATGGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Pairagon GCTGATGGAGCATGAAGACGACCCCGAT-GTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATCGTGGATG-GCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATCGTGGATGGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATCGTGGATGGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAA- gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATCGTGGATGGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCAGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGA-GGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtaggATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGACGGACCCCACA-ACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtaggATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGACGGACCCCACAACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGACGGACCCCACAACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGACGGACCCCACAACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGACGGACCCCACAACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGACGGACCCCACAACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGACGGACCCCACAACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGACGGACCCCACAACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTC-CTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCCTCAACA-CTATCTGTATGACTTGAACCATACACTCATCAATGTACAGATATGTggtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCCTCAACACTATCTGTATGACTTGAACCATACACTCATCAATGTACAGATATGTggtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCCTCAACACTATCTGTATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCCTCAACACTATCTGTATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCCTCAACACTATCTGTATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCCTCAACACTATCTGTATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCCTCAACACTATCTGTATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCCTCAACACTATCTGTATGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat #### Vegfb_ID1955_5 --> 1 - 2 Original Alignment aCCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACag tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagaCCTAAAAAGAAGGAGCACTA-TGTGAGGCCCGACcggtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from CESAR aCCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACag tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagaCCTAAAAAGAAGGAGCACTATGTGAGGCCCGACcggtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from Spaln_aa2Genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagACCTAAAAAGAAGGAGCACTATGTGAGGCCCGACCGgtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from Spaln_nt2Genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagACCTAAAAAGAAGGAGCACTATGTGAGGCCCGACCGgtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from Pairagon ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagACCTAAAAAGAAGGAGCACTATGTGAGGCCCGACCGgtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from Exonerate_protein2genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagACCTAAAAAGAAGGAGCACTATGTGAGGCCCGACCGgtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from Exonerate_coding2genome ACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagACCTAAAAAGAAGGAGCACTATGTGAGGCCCGACCGgtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from GeneWise tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagacctaaaaagaaggagcactatgtgaggcccgaccggtaagagttttccatccctcaatgctggttagtgagagggaggccatttg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTG-GTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaagatggaaaggtttcaaggtttgtacatgctttgtgtgcagtgGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCCAGGGAGGTGCGTGGCACCAC-GAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagtgatcaagtatgagtgcaagtactaagaagtacgggtctggtgta Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaagatggaaaggtttcaaggtttgtacatgctttgtgtgcagtgGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCCAGGGAGGTGCGTGGCACCACGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagtgatcaagtatgagtgcaagtactaagaagtacgggtctggtgta Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaagatggaaaggtttcaaggtttgtacatgctttgtgtgcagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCCAGGGAGGTGCGTGGCACCACGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagtgatcaagtatgagtgcaagtactaagaagtacgggtctggtgta Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaagatggaaaggtttcaaggtttgtacatgctttgtgtgcagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCCAGGGAGGTGCGTGGCACCACGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagtgatcaagtatgagtgcaagtactaagaagtacgggtctggtgta Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTG-GTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaagatggaaaggtttcaaggtttgtacatgctttgtgtgcagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCCAGGGAGGTGCGTGGCACCAC-GAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagtgatcaagtatgagtgcaagtactaagaagtacgggtctggtgta Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaagatggaaaggtttcaaggtttgtacatgctttgtgtgcagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCCAGGGAGGTGCGTGGCACCACGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagtgatcaagtatgagtgcaagtactaagaagtacgggtctggtgta Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaagatggaaaggtttcaaggtttgtacatgctttgtgtgcagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCCAGGGAGGTGCGTGGCACCACGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagtgatcaagtatgagtgcaagtactaagaagtacgggtctggtgta Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaagatggaaaggtttcaaggtttgtacatgctttgtgtgcagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCCAGGGAGGTGCGTGGCACCACGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagtgatcaagtatgagtgcaagtactaagaagtacgggtctggtgta #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTG-GACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagacCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTCGACC-GAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from CESAR acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagacCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTCGACCGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from Spaln_aa2Genome CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG caagtgtgaggagaaagtagctaaaaacttattctttcttttttta gACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTCGACCGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTCGACCGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from Pairagon ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTCGACCGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from Exonerate_protein2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTCGACCGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from Exonerate_coding2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTCGACCGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from GeneWise -----------------------CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagCTAAAAACTTATTCTTTCTTTTTTTAGACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTCGACCGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag #### Vldlr_ID5818_17 --> 2 - 1 Original Alignment ggATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCC-CCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCt ctgctattagtccataaccctaggaatcattttattcttttgtattgcagggATTAATGTTACCACAGCAGTATCAGAAGTGAGCGTTCCCCCCAAAAG-GACTTCAGCCGCCTGGGCCATCCTTCCTCTCtgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from CESAR ggATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCt ctgctattagtccataaccctaggaatcattttattcttttgtattgcagggATTAATGTTACCACAGCAGTATCAGAAGTGAGCGTTCCCCCCAAAAGGACTTCAGCCGCCTGGGCCATCCTTCCTCTCtgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from Spaln_aa2Genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCAGAAGTGAGCGTTCCCCCCAAAAGGACTTCAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from Spaln_nt2Genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCAGAAGTGAGCGTTCCCCCCAAAAGGACTTCAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from Pairagon GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCAGAAGTGAGCGTTCCCCCCAAAAGGACTTCAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from Exonerate_protein2genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCAGAAGTGAGCGTTCCCCCCAAAAGGACTTCAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from Exonerate_coding2genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCAGAAGTGAGCGTTCCCCCCAAAAGGACTTCAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc Alignment from GeneWise GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT ctgctattagtccataaccctaggaatcattttattcttttgtattgcagGGATTAATGTTACCACAGCAGTATCAGAAGTGAGCGTTCCCCCCAAAAGGACTTCAGCCGCCTGGGCCATCCTTCCTCTCTgtgagtatatatgttaagaactcaatctacacaagagcacctcatcagcc #### Vps13a_ID4058_65 --> 2 - 0 Original Alignment gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCA-ATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgactgggccattgtctgagtccatattttgttcactacaggtGGGCTAGCTAGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCACATGA-TAAGCAGCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAAGGTTTGGTCTCTgtatggttcccctgagtttgggactgcagcagcagaactgttttgagcta Alignment from CESAR gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgactgggccattgtctgagtccatattttgttcactacaggtGGGCTAGCTAGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCACATGATAAGCAGCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAAGGTTTGGTCTCTgtatggttcccctgagtttgggactgcagcagcagaactgttttgagcta Alignment from Spaln_aa2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgactgggccattgtctgagtccatattttgttcactacagGTGGGCTAGCTAGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCACATGATAAGCAGCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAAGGTTTGGTCTCTgtatggttcccctgagtttgggactgcagcagcagaactgttttgagcta Alignment from Spaln_nt2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgactgggccattgtctgagtccatattttgttcactacagGTGGGCTAGCTAGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCACATGATAAGCAGCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAAGGTTTGGTCTCTgtatggttcccctgagtttgggactgcagcagcagaactgttttgagcta Alignment from Pairagon GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgactgggccattgtctgagtccatattttgttcactacagGTGGGCTAGCTAGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCACATGATAAGCAGCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAAGGTTTGGTCTCTgtatggttcccctgagtttgggactgcagcagcagaactgttttgagcta Alignment from Exonerate_protein2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgactgggccattgtctgagtccatattttgttcactacagGTGGGCTAGCTAGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCACATGATAAGCAGCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAAGGTTTGGTCTCTgtatggttcccctgagtttgggactgcagcagcagaactgttttgagcta Alignment from Exonerate_coding2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgactgggccattgtctgagtccatattttgttcactacagGTGGGCTAGCTAGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCACATGATAAGCAGCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAAGGTTTGGTCTCTgtatggttcccctgagtttgggactgcagcagcagaactgttttgagcta Alignment from GeneWise GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgatgactgggccattgtctgagtccatattttgttcactacagGTGGGCTAGCTAGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCACATGATAAGCAGCCTGCTGGACTACGAGAGGGCATCACTCGAGGGGGAAAAGGTTTGGTCTCTgtatggttcccctgagtttgggactgcagcagcagaactgttttgagcta #### Vps13a_ID4074_49 --> 0 - 0 Original Alignment GTTCAGCTTATGGTAACTGATAGTGAGCTTTCA-GATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCACGATCAATTTT-AATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from CESAR GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCACGATCAATTTTAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from Spaln_aa2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCACGATCAATTTTAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from Spaln_nt2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCACGATCAATTTTAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from Pairagon GTTCAGCTTATGGTAACTGATAGTGAGCTTTCA-GATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCACGATCAATTTT-AATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from Exonerate_protein2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCACGATCAATTTTAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from Exonerate_coding2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCACGATCAATTTTAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from GeneWise GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCACGATCAATTTTAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATT-TTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagctTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCCTCATCCAGG-TCAGAAACAGAACGTATCTGAAATTAAAATTGAAggtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagctTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCCTCATCCAGGTCAGAAACAGAACGTATCTGAAATTAAAATTGAAggtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCCTCATCCAGGTCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCCTCATCCAGGTCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCCTCATCCAGGTCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCCTCATCCAGGTCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCCTCATCCAGGTCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCCTCATCCAGGTCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCA-TGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctaggtAGCCTTAAACTTAAAATCCCACTGGAAAAACC-TTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTagtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctaggtAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTagtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg Alignment from GeneWise TCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ctcccttcataaaaacccagaaagtattatttgtgtctgcccgtctctaggtagCCTTAAACTTAAAATCCCACTGGAAAAACCTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtgtgtcacttaaagttaataatatagcttattcccagatttaaaatttg #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGG-GACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGCGACTTAC-GGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGCGACTTACGGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGCGACTTACGGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGCGACTTACGGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGG-GACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGCGACTTAC-GGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGCGACTTACGGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGCGACTTACGGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGCGACTTACGGGGTCTGAGGAGCCTGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCA-GGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCC-GGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from Pairagon GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGAT-GCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagggGGGCAAGGCTGGCTCTGGGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATCGTCCTCA-GACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from CESAR ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagggGGGCAAGGCTGGCTCTGGGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATCGTCCTCAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATCGTCCTCAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATCGTCCTCAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from Pairagon GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATCGTCCTCAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATCGTCCTCAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATCGTCCTCAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from GeneWise GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATCGTCCTCAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa #### Yif1a_ID835_7 --> 1 - 0 Original Alignment gATGATCCTTAGTGTGCTC-ACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccaggATGATCTTGAGTGTGCTTCACAG-ACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgtgtccca Alignment from CESAR gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccaggATGATCTTGAGTGTGCTTCACAGACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgtgtcgtt Alignment from Spaln_aa2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTCACAGACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgtgtccca Alignment from Spaln_nt2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTCACAGACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgtgtccca Alignment from Pairagon GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTCACAGACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgtgtccca Alignment from Exonerate_protein2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTCACAGACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgtgtccca Alignment from Exonerate_coding2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTCACAGACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgtgtccca Alignment from GeneWise GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTCACAGACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgtgtccca #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATT-TATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGAAATGCATTCTATCCCAAGC-GGCTCGCACACACCACTGCAGCATCTGTAAAaggtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from CESAR GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGAAATGCATTCTATCCCAAGCGGCTCGCACACACCACTGCAGCATCTGTAAAaggtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGAAATGCATTCTATCCCAAGCGGCTCGCACACACCACTGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGAAATGCATTCTATCCCAAGCGGCTCGCACACACCACTGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from Pairagon GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATT-TATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGAAATGCATTCTATCCCAAG-CGGCTCGCACACACCACTGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGAAATGCATTCTATCCCAAGCGGCTCGCACACACCACTGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGAAATGCATTCTATCCCAAGCGGCTCGCACACACCACTGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG attatacatcttctactataattgtagttagttactgatttttcttacagGGCAGGAATGACATTAGCACGGTATCCATCTGCAAGAAATGCATTCTATCCCAAGCGGCTCGCACACACCACTGCAGCATCTGTAAAAGgtgagtctgagctgtgctctgtgcctcactcaacttaggtcacactgagt #### Zdhhc6_ID11622_7 --> 0 - 0 Original Alignment ATAGAACAGTTG-AAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggctgctcagttaacttgttatccttcttgcactgctcttctgcctacagATAGAACAGCCGCAAGCAAAAGG-GGACAAGAAAGTCAGAACTgtaagttgtctatttgcagtgatgctgagttctacatgaacatctgttat Alignment from CESAR ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggctgctcagttaacttgttatccttcttgcactgctcttctgcctacagATAGAACAGCCGCAAGCAAAAGGGGACAAGAAAGTCAGAACTgtaagttgtctatttgcagtgatgctgagttctacatgaacatctgttat Alignment from Spaln_aa2Genome ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggctgctcagttaacttgttatccttcttgcactgctcttctgcctacagATAGAACAGCCGCAAGCAAAAGGGGACAAGAAAGTCAGAACTgtaagttgtctatttgcagtgatgctgagttctacatgaacatctgttat Alignment from Spaln_nt2Genome ATAGAACAGTTG-AAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggctgctcagttaacttgttatccttcttgcactgctcttctgcctacagATAGAACAGCCGCAAGCAAAAGG-GGACAAGAAAGTCAGAACTgtaagttgtctatttgcagtgatgctgagttctacatgaacatctgttat Alignment from Pairagon ATAGAACAGTTG-AAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggctgctcagttaacttgttatccttcttgcactgctcttctgcctacagATAGAACAGCCGCAAGCAAAAGG-GGACAAGAAAGTCAGAACTgtaagttgtctatttgcagtgatgctgagttctacatgaacatctgttat Alignment from Exonerate_protein2genome ggctgctcagttaacttgttatccttcttgcactgctcttctgcctacagatagaacagccgcaagcaaaaggggacaagaaagtcagaactgtaagttgtctatttgcagtgatgctgagttctacatgaacatctgttat Alignment from Exonerate_coding2genome ggctgctcagttaacttgttatccttcttgcactgctcttctgcctacagatagaacagccgcaagcaaaaggggacaagaaagtcagaactgtaagttgtctatttgcagtgatgctgagttctacatgaacatctgttat Alignment from GeneWise ggctgctcagttaacttgttatccttcttgcactgctcttctgcctacagatagaacagccgcaagcaaaaggggacaagaaagtcagaactgtaagttgtctatttgcagtgatgctgagttctacatgaacatctgttat #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACAT-CAGTCTCCCGGTGGCATTag tttggctgtataagtgtcttgatagatctatttaaaatgtgtctttaaagatGTTCCCGAAGAACATCCAAA-CCCTGGCGGCATTaggtaaggggctgctccctacatacctaatgtttcaatatttcagcaacgat Alignment from CESAR atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag tttggctgtataagtgtcttgatagatctatttaaaatgtgtctttaaagatGTTCCCGAAGAACATCCAAACCCTGGCGGCATTaggtaaggggctgctccctacatacctaatgtttcaatatttcagcaacgat Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG tttggctgtataagtgtcttgatagatctatttaaaatgtgtctttaaagATGTTCCCGAAGAACATCCAAACCCTGGCGGCATTAGgtaaggggctgctccctacatacctaatgtttcaatatttcagcaacgat Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG tttggctgtataagtgtcttgatagatctatttaaaatgtgtctttaaagATGTTCCCGAAGAACATCCAAACCCTGGCGGCATTAGgtaaggggctgctccctacatacctaatgtttcaatatttcagcaacgat Alignment from Pairagon ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG tttggctgtataagtgtcttgatagatctatttaaaatgtgtctttaaagATGTTCCCGAAGAACATCCAAACCCTGGCGGCATTAGgtaaggggctgctccctacatacctaatgtttcaatatttcagcaacgat Alignment from Exonerate_protein2genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG tttggctgtataagtgtcttgatagatctatttaaaatgtgtctttaaagATGTTCCCGAAGAACATCCAAACCCTGGCGGCATTAGgtaaggggctgctccctacatacctaatgtttcaatatttcagcaacgat Alignment from Exonerate_coding2genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG tttggctgtataagtgtcttgatagatctatttaaaatgtgtctttaaagATGTTCCCGAAGAACATCCAAACCCTGGCGGCATTAGgtaaggggctgctccctacatacctaatgtttcaatatttcagcaacgat Alignment from GeneWise ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG tttggctgtataagtgtcttgatagatctatttaaaatgtgtctttaaagATGTTCCCGAAGAACATCCAAACCCTGGCGGCATTAGgtaaggggctgctccctacatacctaatgtttcaatatttcagcaacgat #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCC-AGGTCCTCTATGGGAGCCACAg gtggcctgcactgtccaagggtcgcaccacaactgtcctttattctacagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACGTTGCTGCTCATTCAAGGTCCCCCCGCT-CTCCATGGGAGCCACAggtatgtgaggaggtctgtggataggattggggctgttgagagcaagaaag Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtggcctgcactgtccaagggtcgcaccacaactgtcctttattctacagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACGTTGCTGCTCATTCAAGGTCCCCCCGCTCTCCATGGGAGCCACAggtatgtgaggaggtctgtggataggattggggctgttgagagcaagaaag Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcactgtccaagggtcgcaccacaactgtcctttattctacagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACGTTGCTGCTCATTCAAGGTCCCCCCGCTCTCCATGGGAGCCACAGgtatgtgaggaggtctgtggataggattggggctgttgagagcaagaaag Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcactgtccaagggtcgcaccacaactgtcctttattctacagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACGTTGCTGCTCATTCAAGGTCCCCCCGCTCTCCATGGGAGCCACAGgtatgtgaggaggtctgtggataggattggggctgttgagagcaagaaag Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcactgtccaagggtcgcaccacaactgtcctttattctacagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACGTTGCTGCTCATTCAAGGTCCCCCCGCTCTCCATGGGAGCCACAGgtatgtgaggaggtctgtggataggattggggctgttgagagcaagaaag Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcactgtccaagggtcgcaccacaactgtcctttattctacagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACGTTGCTGCTCATTCAAGGTCCCCCCGCTCTCCATGGGAGCCACAGgtatgtgaggaggtctgtggataggattggggctgttgagagcaagaaag Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcactgtccaagggtcgcaccacaactgtcctttattctacagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACGTTGCTGCTCATTCAAGGTCCCCCCGCTCTCCATGGGAGCCACAGgtatgtgaggaggtctgtggataggattggggctgttgagagcaagaaag Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcactgtccaagggtcgcaccacaactgtcctttattctacagCGAAGTTGCAGCAACTGTGCAAACAGCTTCTGCTCACGTTGCTGCTCATTCAAGGTCCCCCCGCTCTCCATGGGAGCCACAGgtatgtgaggaggtctgtggataggattggggctgttgagagcaagaaag #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGT-CACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg gaccctttgacctccacgggtcatagtagattcttttttccttttgttagagCGTCGACGGTTCCCCGGACCACC-CAACATCACTCTCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCAGCTAAACTTGAGCCCTCAggtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg gaccctttgacctccacgggtcatagtagattcttttttccttttgttagagCGTCGACGGTTCCCCGGACCACCCAACATCACTCTCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCAGCTAAACTTGAGCCCTCAggtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACCACCCAACATCACTCTCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACCACCCAACATCACTCTCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACCACCCAACATCACTCTCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACCACCCAACATCACTCTCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACCACCCAACATCACTCTCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatagtagattcttttttccttttgttagAGCGTCGACGGTTCCCCGGACCACCCAACATCACTCTCCGAGCTCTGGAGATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCAGCTAAACTTGAGCCCTCAGgtacagggatgtggatgttccttactgaggggaggtaagtgtagctccac #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTC-CGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagatAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCCAGAAAC-AGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATgcgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagatAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCCAGAAACAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATgcgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCCAGAAACAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCCAGAAACAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACTG---CCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCCAGAAACAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACTG---CCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCCAGAAACAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCCAGAAACAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCCAGAAACAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct ####